Multiple sequence alignment - TraesCS2B01G154600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G154600 chr2B 100.000 2235 0 0 965 3199 122715930 122713696 0.000000e+00 4128.0
1 TraesCS2B01G154600 chr2B 100.000 685 0 0 1 685 122716894 122716210 0.000000e+00 1266.0
2 TraesCS2B01G154600 chr2B 97.170 106 2 1 1 105 290110677 290110782 9.120000e-41 178.0
3 TraesCS2B01G154600 chr2B 97.170 106 2 1 1 105 550226546 550226651 9.120000e-41 178.0
4 TraesCS2B01G154600 chr2A 90.593 2126 110 43 1077 3171 79311237 79309171 0.000000e+00 2736.0
5 TraesCS2B01G154600 chr2A 88.750 80 4 4 374 451 79311901 79311825 3.400000e-15 93.5
6 TraesCS2B01G154600 chr2A 100.000 28 0 0 3172 3199 79309155 79309128 6.000000e-03 52.8
7 TraesCS2B01G154600 chr2D 88.972 2267 107 69 965 3171 79053397 79051214 0.000000e+00 2669.0
8 TraesCS2B01G154600 chr2D 100.000 28 0 0 3172 3199 79051198 79051171 6.000000e-03 52.8
9 TraesCS2B01G154600 chr3D 95.575 113 3 2 1 112 255447174 255447285 2.540000e-41 180.0
10 TraesCS2B01G154600 chr4B 96.330 109 3 1 1 108 324421114 324421006 9.120000e-41 178.0
11 TraesCS2B01G154600 chr4B 96.330 109 3 1 1 108 512713242 512713350 9.120000e-41 178.0
12 TraesCS2B01G154600 chr3B 95.495 111 5 0 1 111 52185760 52185650 9.120000e-41 178.0
13 TraesCS2B01G154600 chr3B 96.190 105 4 0 1 105 181704528 181704632 4.240000e-39 172.0
14 TraesCS2B01G154600 chr3A 96.296 108 3 1 1 107 637530229 637530336 3.280000e-40 176.0
15 TraesCS2B01G154600 chr3A 93.750 112 6 1 1 111 697501600 697501489 1.970000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G154600 chr2B 122713696 122716894 3198 True 2697.000000 4128 100.000000 1 3199 2 chr2B.!!$R1 3198
1 TraesCS2B01G154600 chr2A 79309128 79311901 2773 True 960.766667 2736 93.114333 374 3199 3 chr2A.!!$R1 2825
2 TraesCS2B01G154600 chr2D 79051171 79053397 2226 True 1360.900000 2669 94.486000 965 3199 2 chr2D.!!$R1 2234

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.035439 ACCGAACATGGCCTTAGTGG 60.035 55.0 3.32 1.22 39.35 4.00 F
200 201 0.041663 CACCGTGCAAACGTTACAGG 60.042 55.0 0.00 8.97 0.00 4.00 F
2019 2048 0.166814 GTGCTGAATTGCTCGGTGAC 59.833 55.0 0.00 0.00 32.37 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1973 2001 0.179134 CACCTCGGATCACTTCGACC 60.179 60.000 0.0 0.0 0.0 4.79 R
2127 2157 5.095490 GCCATGCTAAGTTACATTGTTCAC 58.905 41.667 0.0 0.0 0.0 3.18 R
3103 3177 1.649664 CTTCTGATCACCTTCTGCCG 58.350 55.000 0.0 0.0 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.677156 AAGAGGATTGGAGGGGATTTG 57.323 47.619 0.00 0.00 0.00 2.32
23 24 1.855599 AGAGGATTGGAGGGGATTTGG 59.144 52.381 0.00 0.00 0.00 3.28
24 25 0.936691 AGGATTGGAGGGGATTTGGG 59.063 55.000 0.00 0.00 0.00 4.12
25 26 0.105504 GGATTGGAGGGGATTTGGGG 60.106 60.000 0.00 0.00 0.00 4.96
26 27 0.105504 GATTGGAGGGGATTTGGGGG 60.106 60.000 0.00 0.00 0.00 5.40
44 45 4.503714 GGGGGATTTGACTTGTAGATGA 57.496 45.455 0.00 0.00 0.00 2.92
45 46 5.053978 GGGGGATTTGACTTGTAGATGAT 57.946 43.478 0.00 0.00 0.00 2.45
46 47 5.449553 GGGGGATTTGACTTGTAGATGATT 58.550 41.667 0.00 0.00 0.00 2.57
47 48 5.532779 GGGGGATTTGACTTGTAGATGATTC 59.467 44.000 0.00 0.00 0.00 2.52
48 49 6.122277 GGGGATTTGACTTGTAGATGATTCA 58.878 40.000 0.00 0.00 0.00 2.57
49 50 6.603201 GGGGATTTGACTTGTAGATGATTCAA 59.397 38.462 0.00 0.00 0.00 2.69
50 51 7.286316 GGGGATTTGACTTGTAGATGATTCAAT 59.714 37.037 0.00 0.00 0.00 2.57
51 52 8.348507 GGGATTTGACTTGTAGATGATTCAATC 58.651 37.037 0.00 0.00 0.00 2.67
52 53 8.348507 GGATTTGACTTGTAGATGATTCAATCC 58.651 37.037 0.00 0.00 0.00 3.01
53 54 8.812513 ATTTGACTTGTAGATGATTCAATCCA 57.187 30.769 0.00 0.00 0.00 3.41
54 55 7.615582 TTGACTTGTAGATGATTCAATCCAC 57.384 36.000 0.00 0.00 0.00 4.02
55 56 6.115446 TGACTTGTAGATGATTCAATCCACC 58.885 40.000 0.00 0.00 0.00 4.61
56 57 6.070021 TGACTTGTAGATGATTCAATCCACCT 60.070 38.462 0.00 0.00 0.00 4.00
57 58 6.352516 ACTTGTAGATGATTCAATCCACCTC 58.647 40.000 0.00 0.00 0.00 3.85
58 59 5.955961 TGTAGATGATTCAATCCACCTCA 57.044 39.130 0.00 0.00 0.00 3.86
59 60 6.312141 TGTAGATGATTCAATCCACCTCAA 57.688 37.500 0.00 0.00 0.00 3.02
60 61 6.903516 TGTAGATGATTCAATCCACCTCAAT 58.096 36.000 0.00 0.00 0.00 2.57
61 62 6.994496 TGTAGATGATTCAATCCACCTCAATC 59.006 38.462 0.00 0.00 0.00 2.67
62 63 5.383476 AGATGATTCAATCCACCTCAATCC 58.617 41.667 0.00 0.00 0.00 3.01
63 64 3.902218 TGATTCAATCCACCTCAATCCC 58.098 45.455 0.00 0.00 0.00 3.85
64 65 3.528905 TGATTCAATCCACCTCAATCCCT 59.471 43.478 0.00 0.00 0.00 4.20
65 66 3.370840 TTCAATCCACCTCAATCCCTG 57.629 47.619 0.00 0.00 0.00 4.45
66 67 2.278245 TCAATCCACCTCAATCCCTGT 58.722 47.619 0.00 0.00 0.00 4.00
67 68 2.239654 TCAATCCACCTCAATCCCTGTC 59.760 50.000 0.00 0.00 0.00 3.51
68 69 1.971149 ATCCACCTCAATCCCTGTCA 58.029 50.000 0.00 0.00 0.00 3.58
69 70 1.741028 TCCACCTCAATCCCTGTCAA 58.259 50.000 0.00 0.00 0.00 3.18
70 71 2.061848 TCCACCTCAATCCCTGTCAAA 58.938 47.619 0.00 0.00 0.00 2.69
71 72 2.445145 TCCACCTCAATCCCTGTCAAAA 59.555 45.455 0.00 0.00 0.00 2.44
72 73 2.558359 CCACCTCAATCCCTGTCAAAAC 59.442 50.000 0.00 0.00 0.00 2.43
73 74 2.558359 CACCTCAATCCCTGTCAAAACC 59.442 50.000 0.00 0.00 0.00 3.27
74 75 2.171003 CCTCAATCCCTGTCAAAACCC 58.829 52.381 0.00 0.00 0.00 4.11
75 76 2.171003 CTCAATCCCTGTCAAAACCCC 58.829 52.381 0.00 0.00 0.00 4.95
76 77 1.786441 TCAATCCCTGTCAAAACCCCT 59.214 47.619 0.00 0.00 0.00 4.79
77 78 2.171003 CAATCCCTGTCAAAACCCCTC 58.829 52.381 0.00 0.00 0.00 4.30
78 79 0.704664 ATCCCTGTCAAAACCCCTCC 59.295 55.000 0.00 0.00 0.00 4.30
79 80 0.699577 TCCCTGTCAAAACCCCTCCA 60.700 55.000 0.00 0.00 0.00 3.86
80 81 0.539669 CCCTGTCAAAACCCCTCCAC 60.540 60.000 0.00 0.00 0.00 4.02
81 82 0.184933 CCTGTCAAAACCCCTCCACA 59.815 55.000 0.00 0.00 0.00 4.17
82 83 1.410932 CCTGTCAAAACCCCTCCACAA 60.411 52.381 0.00 0.00 0.00 3.33
83 84 1.681264 CTGTCAAAACCCCTCCACAAC 59.319 52.381 0.00 0.00 0.00 3.32
84 85 1.037493 GTCAAAACCCCTCCACAACC 58.963 55.000 0.00 0.00 0.00 3.77
85 86 0.105913 TCAAAACCCCTCCACAACCC 60.106 55.000 0.00 0.00 0.00 4.11
86 87 0.105709 CAAAACCCCTCCACAACCCT 60.106 55.000 0.00 0.00 0.00 4.34
87 88 0.105709 AAAACCCCTCCACAACCCTG 60.106 55.000 0.00 0.00 0.00 4.45
88 89 1.293683 AAACCCCTCCACAACCCTGT 61.294 55.000 0.00 0.00 35.63 4.00
89 90 1.716028 AACCCCTCCACAACCCTGTC 61.716 60.000 0.00 0.00 31.64 3.51
90 91 2.153401 CCCCTCCACAACCCTGTCA 61.153 63.158 0.00 0.00 31.64 3.58
91 92 1.715019 CCCCTCCACAACCCTGTCAA 61.715 60.000 0.00 0.00 31.64 3.18
92 93 0.537371 CCCTCCACAACCCTGTCAAC 60.537 60.000 0.00 0.00 31.64 3.18
93 94 0.537371 CCTCCACAACCCTGTCAACC 60.537 60.000 0.00 0.00 31.64 3.77
94 95 0.884704 CTCCACAACCCTGTCAACCG 60.885 60.000 0.00 0.00 31.64 4.44
95 96 1.147376 CCACAACCCTGTCAACCGA 59.853 57.895 0.00 0.00 31.64 4.69
96 97 0.464735 CCACAACCCTGTCAACCGAA 60.465 55.000 0.00 0.00 31.64 4.30
97 98 0.661020 CACAACCCTGTCAACCGAAC 59.339 55.000 0.00 0.00 31.64 3.95
98 99 0.253610 ACAACCCTGTCAACCGAACA 59.746 50.000 0.00 0.00 0.00 3.18
99 100 1.133915 ACAACCCTGTCAACCGAACAT 60.134 47.619 0.00 0.00 0.00 2.71
100 101 1.266718 CAACCCTGTCAACCGAACATG 59.733 52.381 0.00 0.00 0.00 3.21
101 102 0.250727 ACCCTGTCAACCGAACATGG 60.251 55.000 0.00 0.00 38.11 3.66
102 103 1.586154 CCCTGTCAACCGAACATGGC 61.586 60.000 0.00 0.00 0.00 4.40
103 104 1.586154 CCTGTCAACCGAACATGGCC 61.586 60.000 0.00 0.00 0.00 5.36
104 105 0.606401 CTGTCAACCGAACATGGCCT 60.606 55.000 3.32 0.00 0.00 5.19
105 106 0.179004 TGTCAACCGAACATGGCCTT 60.179 50.000 3.32 0.00 0.00 4.35
106 107 1.072489 TGTCAACCGAACATGGCCTTA 59.928 47.619 3.32 0.00 0.00 2.69
107 108 1.737793 GTCAACCGAACATGGCCTTAG 59.262 52.381 3.32 0.00 0.00 2.18
108 109 1.349688 TCAACCGAACATGGCCTTAGT 59.650 47.619 3.32 0.00 0.00 2.24
109 110 1.468520 CAACCGAACATGGCCTTAGTG 59.531 52.381 3.32 0.00 0.00 2.74
110 111 0.035439 ACCGAACATGGCCTTAGTGG 60.035 55.000 3.32 1.22 39.35 4.00
111 112 0.251916 CCGAACATGGCCTTAGTGGA 59.748 55.000 3.32 0.00 38.35 4.02
112 113 1.369625 CGAACATGGCCTTAGTGGAC 58.630 55.000 3.32 0.00 46.75 4.02
118 119 3.478540 GGCCTTAGTGGACACATCC 57.521 57.895 5.14 0.00 45.54 3.51
128 129 2.403252 GGACACATCCACTACCCTTG 57.597 55.000 0.00 0.00 45.47 3.61
129 130 1.906574 GGACACATCCACTACCCTTGA 59.093 52.381 0.00 0.00 45.47 3.02
130 131 2.304761 GGACACATCCACTACCCTTGAA 59.695 50.000 0.00 0.00 45.47 2.69
131 132 3.244770 GGACACATCCACTACCCTTGAAA 60.245 47.826 0.00 0.00 45.47 2.69
132 133 4.394729 GACACATCCACTACCCTTGAAAA 58.605 43.478 0.00 0.00 0.00 2.29
133 134 4.142038 ACACATCCACTACCCTTGAAAAC 58.858 43.478 0.00 0.00 0.00 2.43
134 135 3.506067 CACATCCACTACCCTTGAAAACC 59.494 47.826 0.00 0.00 0.00 3.27
135 136 3.139397 ACATCCACTACCCTTGAAAACCA 59.861 43.478 0.00 0.00 0.00 3.67
136 137 4.202673 ACATCCACTACCCTTGAAAACCAT 60.203 41.667 0.00 0.00 0.00 3.55
137 138 3.761897 TCCACTACCCTTGAAAACCATG 58.238 45.455 0.00 0.00 0.00 3.66
138 139 3.396276 TCCACTACCCTTGAAAACCATGA 59.604 43.478 0.00 0.00 0.00 3.07
139 140 4.044065 TCCACTACCCTTGAAAACCATGAT 59.956 41.667 0.00 0.00 0.00 2.45
140 141 5.251932 TCCACTACCCTTGAAAACCATGATA 59.748 40.000 0.00 0.00 0.00 2.15
141 142 6.069088 TCCACTACCCTTGAAAACCATGATAT 60.069 38.462 0.00 0.00 0.00 1.63
142 143 6.039717 CCACTACCCTTGAAAACCATGATATG 59.960 42.308 0.00 0.00 0.00 1.78
143 144 6.828273 CACTACCCTTGAAAACCATGATATGA 59.172 38.462 0.00 0.00 0.00 2.15
144 145 7.339212 CACTACCCTTGAAAACCATGATATGAA 59.661 37.037 0.00 0.00 0.00 2.57
145 146 7.893302 ACTACCCTTGAAAACCATGATATGAAA 59.107 33.333 0.00 0.00 0.00 2.69
146 147 6.935167 ACCCTTGAAAACCATGATATGAAAC 58.065 36.000 0.00 0.00 0.00 2.78
147 148 6.725834 ACCCTTGAAAACCATGATATGAAACT 59.274 34.615 0.00 0.00 0.00 2.66
148 149 7.893302 ACCCTTGAAAACCATGATATGAAACTA 59.107 33.333 0.00 0.00 0.00 2.24
149 150 8.917088 CCCTTGAAAACCATGATATGAAACTAT 58.083 33.333 0.00 0.00 0.00 2.12
150 151 9.740239 CCTTGAAAACCATGATATGAAACTATG 57.260 33.333 0.00 0.00 0.00 2.23
154 155 9.736023 GAAAACCATGATATGAAACTATGTTCC 57.264 33.333 0.00 0.00 0.00 3.62
155 156 9.479549 AAAACCATGATATGAAACTATGTTCCT 57.520 29.630 0.00 0.00 0.00 3.36
156 157 9.479549 AAACCATGATATGAAACTATGTTCCTT 57.520 29.630 0.00 0.00 0.00 3.36
157 158 8.455903 ACCATGATATGAAACTATGTTCCTTG 57.544 34.615 0.00 0.00 0.00 3.61
158 159 8.055181 ACCATGATATGAAACTATGTTCCTTGT 58.945 33.333 0.00 0.00 0.00 3.16
159 160 9.559732 CCATGATATGAAACTATGTTCCTTGTA 57.440 33.333 0.00 0.00 0.00 2.41
162 163 9.952030 TGATATGAAACTATGTTCCTTGTACAA 57.048 29.630 8.28 8.28 0.00 2.41
165 166 7.266922 TGAAACTATGTTCCTTGTACAAACC 57.733 36.000 10.03 0.00 0.00 3.27
166 167 6.829298 TGAAACTATGTTCCTTGTACAAACCA 59.171 34.615 10.03 4.43 0.00 3.67
167 168 6.628919 AACTATGTTCCTTGTACAAACCAC 57.371 37.500 10.03 6.74 0.00 4.16
168 169 5.067954 ACTATGTTCCTTGTACAAACCACC 58.932 41.667 10.03 0.00 0.00 4.61
169 170 2.657143 TGTTCCTTGTACAAACCACCC 58.343 47.619 10.03 0.00 0.00 4.61
170 171 1.958579 GTTCCTTGTACAAACCACCCC 59.041 52.381 10.03 0.00 0.00 4.95
171 172 0.108963 TCCTTGTACAAACCACCCCG 59.891 55.000 10.03 0.00 0.00 5.73
172 173 0.891904 CCTTGTACAAACCACCCCGG 60.892 60.000 10.03 0.00 42.50 5.73
173 174 0.108963 CTTGTACAAACCACCCCGGA 59.891 55.000 10.03 0.00 38.63 5.14
174 175 0.108963 TTGTACAAACCACCCCGGAG 59.891 55.000 5.64 0.00 38.63 4.63
175 176 1.055551 TGTACAAACCACCCCGGAGT 61.056 55.000 0.73 0.00 38.63 3.85
176 177 0.321034 GTACAAACCACCCCGGAGTC 60.321 60.000 0.73 0.00 38.63 3.36
177 178 1.818959 TACAAACCACCCCGGAGTCG 61.819 60.000 0.73 0.00 38.63 4.18
197 198 3.136800 CACACCGTGCAAACGTTAC 57.863 52.632 0.00 0.00 0.00 2.50
198 199 0.374063 CACACCGTGCAAACGTTACA 59.626 50.000 0.00 0.00 0.00 2.41
199 200 0.653636 ACACCGTGCAAACGTTACAG 59.346 50.000 0.00 0.00 0.00 2.74
200 201 0.041663 CACCGTGCAAACGTTACAGG 60.042 55.000 0.00 8.97 0.00 4.00
201 202 0.179078 ACCGTGCAAACGTTACAGGA 60.179 50.000 19.61 5.67 0.00 3.86
202 203 0.233848 CCGTGCAAACGTTACAGGAC 59.766 55.000 19.61 14.51 0.00 3.85
203 204 0.931702 CGTGCAAACGTTACAGGACA 59.068 50.000 15.14 0.74 0.00 4.02
204 205 1.529438 CGTGCAAACGTTACAGGACAT 59.471 47.619 15.14 0.00 0.00 3.06
205 206 2.661709 CGTGCAAACGTTACAGGACATG 60.662 50.000 15.14 3.56 0.00 3.21
206 207 2.546368 GTGCAAACGTTACAGGACATGA 59.454 45.455 0.00 0.00 0.00 3.07
207 208 3.002862 GTGCAAACGTTACAGGACATGAA 59.997 43.478 0.00 0.00 0.00 2.57
208 209 3.818210 TGCAAACGTTACAGGACATGAAT 59.182 39.130 0.00 0.00 0.00 2.57
209 210 4.158384 GCAAACGTTACAGGACATGAATG 58.842 43.478 0.00 0.00 0.00 2.67
210 211 4.722194 CAAACGTTACAGGACATGAATGG 58.278 43.478 0.00 0.00 0.00 3.16
211 212 3.973206 ACGTTACAGGACATGAATGGA 57.027 42.857 0.00 0.00 0.00 3.41
212 213 4.487714 ACGTTACAGGACATGAATGGAT 57.512 40.909 0.00 0.00 0.00 3.41
213 214 4.191544 ACGTTACAGGACATGAATGGATG 58.808 43.478 0.00 0.00 0.00 3.51
214 215 3.002656 CGTTACAGGACATGAATGGATGC 59.997 47.826 0.00 0.00 0.00 3.91
215 216 2.812836 ACAGGACATGAATGGATGCA 57.187 45.000 0.00 0.00 0.00 3.96
216 217 2.372264 ACAGGACATGAATGGATGCAC 58.628 47.619 0.00 0.00 0.00 4.57
217 218 1.332686 CAGGACATGAATGGATGCACG 59.667 52.381 0.00 0.00 0.00 5.34
218 219 1.210234 AGGACATGAATGGATGCACGA 59.790 47.619 0.00 0.00 0.00 4.35
219 220 2.158711 AGGACATGAATGGATGCACGAT 60.159 45.455 0.00 0.00 0.00 3.73
220 221 2.620115 GGACATGAATGGATGCACGATT 59.380 45.455 0.00 0.00 0.00 3.34
221 222 3.304257 GGACATGAATGGATGCACGATTC 60.304 47.826 0.00 13.26 41.75 2.52
225 226 4.987408 TGAATGGATGCACGATTCATTT 57.013 36.364 16.64 0.00 44.47 2.32
226 227 4.674475 TGAATGGATGCACGATTCATTTG 58.326 39.130 16.64 0.00 44.47 2.32
227 228 3.720949 ATGGATGCACGATTCATTTGG 57.279 42.857 0.00 0.00 22.81 3.28
228 229 2.445427 TGGATGCACGATTCATTTGGT 58.555 42.857 0.00 0.00 0.00 3.67
229 230 3.615155 TGGATGCACGATTCATTTGGTA 58.385 40.909 0.00 0.00 0.00 3.25
230 231 4.013050 TGGATGCACGATTCATTTGGTAA 58.987 39.130 0.00 0.00 0.00 2.85
231 232 4.096231 TGGATGCACGATTCATTTGGTAAG 59.904 41.667 0.00 0.00 0.00 2.34
232 233 4.498009 GGATGCACGATTCATTTGGTAAGG 60.498 45.833 0.00 0.00 0.00 2.69
233 234 3.417101 TGCACGATTCATTTGGTAAGGT 58.583 40.909 0.00 0.00 0.00 3.50
234 235 3.190327 TGCACGATTCATTTGGTAAGGTG 59.810 43.478 0.00 0.00 0.00 4.00
235 236 3.438781 GCACGATTCATTTGGTAAGGTGA 59.561 43.478 0.00 0.00 0.00 4.02
236 237 4.083003 GCACGATTCATTTGGTAAGGTGAA 60.083 41.667 0.00 0.00 35.33 3.18
237 238 5.563867 GCACGATTCATTTGGTAAGGTGAAA 60.564 40.000 0.00 0.00 34.62 2.69
238 239 5.856455 CACGATTCATTTGGTAAGGTGAAAC 59.144 40.000 0.00 0.00 34.62 2.78
239 240 5.086058 CGATTCATTTGGTAAGGTGAAACG 58.914 41.667 0.00 0.00 39.32 3.60
240 241 4.839668 TTCATTTGGTAAGGTGAAACGG 57.160 40.909 0.00 0.00 38.12 4.44
241 242 2.554893 TCATTTGGTAAGGTGAAACGGC 59.445 45.455 0.00 0.00 38.12 5.68
242 243 2.054232 TTTGGTAAGGTGAAACGGCA 57.946 45.000 0.00 0.00 38.12 5.69
243 244 2.054232 TTGGTAAGGTGAAACGGCAA 57.946 45.000 0.00 0.00 38.12 4.52
244 245 2.054232 TGGTAAGGTGAAACGGCAAA 57.946 45.000 0.00 0.00 38.12 3.68
245 246 1.677052 TGGTAAGGTGAAACGGCAAAC 59.323 47.619 0.00 0.00 38.12 2.93
246 247 1.001048 GGTAAGGTGAAACGGCAAACC 60.001 52.381 0.00 0.00 38.12 3.27
258 259 2.963498 GGCAAACCGTTGAGTAAGAC 57.037 50.000 0.00 0.00 36.83 3.01
259 260 1.534163 GGCAAACCGTTGAGTAAGACC 59.466 52.381 0.00 0.00 36.83 3.85
260 261 1.193874 GCAAACCGTTGAGTAAGACCG 59.806 52.381 0.00 0.00 36.83 4.79
261 262 2.476821 CAAACCGTTGAGTAAGACCGT 58.523 47.619 0.00 0.00 36.83 4.83
262 263 2.144482 AACCGTTGAGTAAGACCGTG 57.856 50.000 0.00 0.00 0.00 4.94
263 264 1.321474 ACCGTTGAGTAAGACCGTGA 58.679 50.000 0.00 0.00 0.00 4.35
264 265 1.682854 ACCGTTGAGTAAGACCGTGAA 59.317 47.619 0.00 0.00 0.00 3.18
265 266 2.101249 ACCGTTGAGTAAGACCGTGAAA 59.899 45.455 0.00 0.00 0.00 2.69
266 267 2.473984 CCGTTGAGTAAGACCGTGAAAC 59.526 50.000 0.00 0.00 0.00 2.78
267 268 3.378339 CGTTGAGTAAGACCGTGAAACT 58.622 45.455 0.00 0.00 31.75 2.66
268 269 4.539870 CGTTGAGTAAGACCGTGAAACTA 58.460 43.478 0.00 0.00 31.75 2.24
269 270 5.159209 CGTTGAGTAAGACCGTGAAACTAT 58.841 41.667 0.00 0.00 31.75 2.12
270 271 5.632347 CGTTGAGTAAGACCGTGAAACTATT 59.368 40.000 0.00 0.00 31.75 1.73
271 272 6.803320 CGTTGAGTAAGACCGTGAAACTATTA 59.197 38.462 0.00 0.00 31.75 0.98
272 273 7.326789 CGTTGAGTAAGACCGTGAAACTATTAA 59.673 37.037 0.00 0.00 31.75 1.40
273 274 8.430828 GTTGAGTAAGACCGTGAAACTATTAAC 58.569 37.037 0.00 0.00 31.75 2.01
274 275 6.803320 TGAGTAAGACCGTGAAACTATTAACG 59.197 38.462 0.00 0.00 42.12 3.18
282 283 6.642683 CGTGAAACTATTAACGGAATCTGT 57.357 37.500 0.00 0.00 39.34 3.41
283 284 6.693342 CGTGAAACTATTAACGGAATCTGTC 58.307 40.000 0.00 0.00 39.34 3.51
284 285 6.530534 CGTGAAACTATTAACGGAATCTGTCT 59.469 38.462 0.00 0.00 39.34 3.41
285 286 7.699391 CGTGAAACTATTAACGGAATCTGTCTA 59.301 37.037 0.00 0.00 39.34 2.59
286 287 8.805688 GTGAAACTATTAACGGAATCTGTCTAC 58.194 37.037 0.00 0.00 0.00 2.59
287 288 7.699391 TGAAACTATTAACGGAATCTGTCTACG 59.301 37.037 0.00 0.00 0.00 3.51
288 289 6.690194 ACTATTAACGGAATCTGTCTACGT 57.310 37.500 0.00 0.00 39.74 3.57
289 290 7.792374 ACTATTAACGGAATCTGTCTACGTA 57.208 36.000 0.00 0.00 36.69 3.57
290 291 7.859598 ACTATTAACGGAATCTGTCTACGTAG 58.140 38.462 16.73 16.73 36.69 3.51
292 293 6.500684 TTAACGGAATCTGTCTACGTAGTT 57.499 37.500 21.53 8.67 37.78 2.24
293 294 4.352600 ACGGAATCTGTCTACGTAGTTG 57.647 45.455 21.53 12.77 37.78 3.16
294 295 3.106672 CGGAATCTGTCTACGTAGTTGC 58.893 50.000 21.53 12.35 37.78 4.17
295 296 3.427098 CGGAATCTGTCTACGTAGTTGCA 60.427 47.826 21.53 16.70 37.78 4.08
296 297 4.491676 GGAATCTGTCTACGTAGTTGCAA 58.508 43.478 21.53 0.00 37.78 4.08
297 298 4.326548 GGAATCTGTCTACGTAGTTGCAAC 59.673 45.833 22.17 22.17 37.78 4.17
298 299 4.785511 ATCTGTCTACGTAGTTGCAACT 57.214 40.909 32.97 32.97 37.78 3.16
299 300 4.579454 TCTGTCTACGTAGTTGCAACTT 57.421 40.909 35.20 20.91 37.78 2.66
300 301 4.940463 TCTGTCTACGTAGTTGCAACTTT 58.060 39.130 35.20 21.89 37.78 2.66
301 302 4.980434 TCTGTCTACGTAGTTGCAACTTTC 59.020 41.667 35.20 25.38 37.78 2.62
302 303 4.053295 TGTCTACGTAGTTGCAACTTTCC 58.947 43.478 35.20 21.73 37.78 3.13
303 304 4.053295 GTCTACGTAGTTGCAACTTTCCA 58.947 43.478 35.20 16.31 37.78 3.53
304 305 4.150098 GTCTACGTAGTTGCAACTTTCCAG 59.850 45.833 35.20 24.89 37.78 3.86
305 306 3.188159 ACGTAGTTGCAACTTTCCAGA 57.812 42.857 35.20 15.15 37.78 3.86
306 307 2.870411 ACGTAGTTGCAACTTTCCAGAC 59.130 45.455 35.20 24.04 37.78 3.51
307 308 3.131396 CGTAGTTGCAACTTTCCAGACT 58.869 45.455 35.20 12.14 40.37 3.24
308 309 3.059597 CGTAGTTGCAACTTTCCAGACTG 60.060 47.826 35.20 17.74 40.37 3.51
309 310 2.301346 AGTTGCAACTTTCCAGACTGG 58.699 47.619 26.36 15.99 35.21 4.00
310 311 1.338020 GTTGCAACTTTCCAGACTGGG 59.662 52.381 22.36 8.13 38.32 4.45
311 312 0.823356 TGCAACTTTCCAGACTGGGC 60.823 55.000 21.56 15.32 38.32 5.36
312 313 1.527433 GCAACTTTCCAGACTGGGCC 61.527 60.000 21.56 0.00 38.32 5.80
313 314 0.895559 CAACTTTCCAGACTGGGCCC 60.896 60.000 21.56 17.59 38.32 5.80
314 315 2.045926 CTTTCCAGACTGGGCCCG 60.046 66.667 21.56 14.85 38.32 6.13
315 316 2.852075 TTTCCAGACTGGGCCCGT 60.852 61.111 21.56 18.34 38.32 5.28
316 317 2.804828 CTTTCCAGACTGGGCCCGTC 62.805 65.000 28.69 28.69 38.32 4.79
319 320 3.066190 CAGACTGGGCCCGTCGTA 61.066 66.667 29.03 9.48 36.53 3.43
320 321 3.066814 AGACTGGGCCCGTCGTAC 61.067 66.667 29.03 14.72 36.53 3.67
321 322 4.139234 GACTGGGCCCGTCGTACC 62.139 72.222 24.47 8.33 0.00 3.34
328 329 3.512516 CCCGTCGTACCCCGTCTC 61.513 72.222 0.00 0.00 37.94 3.36
329 330 3.512516 CCGTCGTACCCCGTCTCC 61.513 72.222 0.00 0.00 37.94 3.71
330 331 3.869272 CGTCGTACCCCGTCTCCG 61.869 72.222 0.00 0.00 37.94 4.63
331 332 4.185059 GTCGTACCCCGTCTCCGC 62.185 72.222 0.00 0.00 37.94 5.54
334 335 3.885521 GTACCCCGTCTCCGCGAG 61.886 72.222 8.23 3.02 0.00 5.03
341 342 3.470567 GTCTCCGCGAGCGTGTTG 61.471 66.667 8.23 0.99 37.81 3.33
342 343 3.973516 TCTCCGCGAGCGTGTTGT 61.974 61.111 8.23 0.00 37.81 3.32
343 344 2.126618 CTCCGCGAGCGTGTTGTA 60.127 61.111 8.23 0.00 37.81 2.41
344 345 2.429571 TCCGCGAGCGTGTTGTAC 60.430 61.111 8.23 0.00 37.81 2.90
345 346 2.731721 CCGCGAGCGTGTTGTACA 60.732 61.111 8.23 0.00 37.81 2.90
346 347 2.092291 CCGCGAGCGTGTTGTACAT 61.092 57.895 8.23 0.00 37.81 2.29
347 348 1.057208 CGCGAGCGTGTTGTACATG 59.943 57.895 0.00 0.00 38.13 3.21
348 349 1.341369 CGCGAGCGTGTTGTACATGA 61.341 55.000 0.00 0.00 37.29 3.07
349 350 0.999406 GCGAGCGTGTTGTACATGAT 59.001 50.000 0.00 0.00 37.29 2.45
350 351 1.005975 GCGAGCGTGTTGTACATGATC 60.006 52.381 0.00 7.11 44.53 2.92
351 352 2.530177 CGAGCGTGTTGTACATGATCT 58.470 47.619 13.41 0.00 45.47 2.75
352 353 2.279921 CGAGCGTGTTGTACATGATCTG 59.720 50.000 13.41 5.62 45.47 2.90
353 354 3.511699 GAGCGTGTTGTACATGATCTGA 58.488 45.455 0.00 0.00 44.57 3.27
354 355 3.254060 AGCGTGTTGTACATGATCTGAC 58.746 45.455 0.00 0.00 37.29 3.51
355 356 2.028045 GCGTGTTGTACATGATCTGACG 59.972 50.000 0.00 1.69 37.29 4.35
356 357 2.598637 CGTGTTGTACATGATCTGACGG 59.401 50.000 0.00 0.00 37.29 4.79
357 358 2.348666 GTGTTGTACATGATCTGACGGC 59.651 50.000 0.00 0.00 0.00 5.68
358 359 1.933853 GTTGTACATGATCTGACGGCC 59.066 52.381 0.00 0.00 0.00 6.13
359 360 1.190643 TGTACATGATCTGACGGCCA 58.809 50.000 2.24 0.00 0.00 5.36
360 361 1.762370 TGTACATGATCTGACGGCCAT 59.238 47.619 2.24 0.00 0.00 4.40
361 362 2.138320 GTACATGATCTGACGGCCATG 58.862 52.381 2.24 3.94 41.40 3.66
362 363 0.816825 ACATGATCTGACGGCCATGC 60.817 55.000 2.24 0.00 39.81 4.06
363 364 0.534427 CATGATCTGACGGCCATGCT 60.534 55.000 2.24 0.00 31.43 3.79
364 365 0.534427 ATGATCTGACGGCCATGCTG 60.534 55.000 2.24 0.00 41.29 4.41
365 366 2.515523 ATCTGACGGCCATGCTGC 60.516 61.111 2.24 0.00 38.71 5.25
366 367 3.333899 ATCTGACGGCCATGCTGCA 62.334 57.895 4.13 4.13 38.71 4.41
367 368 3.807538 CTGACGGCCATGCTGCAC 61.808 66.667 3.57 0.00 38.71 4.57
368 369 4.334118 TGACGGCCATGCTGCACT 62.334 61.111 3.57 0.00 38.71 4.40
369 370 3.058160 GACGGCCATGCTGCACTT 61.058 61.111 3.57 0.00 38.71 3.16
370 371 3.332493 GACGGCCATGCTGCACTTG 62.332 63.158 3.57 0.00 38.71 3.16
371 372 4.789075 CGGCCATGCTGCACTTGC 62.789 66.667 3.57 7.94 42.50 4.01
372 373 3.379445 GGCCATGCTGCACTTGCT 61.379 61.111 3.57 0.00 42.66 3.91
378 379 1.538687 ATGCTGCACTTGCTTTCCCC 61.539 55.000 3.57 0.00 42.66 4.81
406 407 4.096003 CCGCAACCATCCCCTCGT 62.096 66.667 0.00 0.00 0.00 4.18
407 408 2.819595 CGCAACCATCCCCTCGTG 60.820 66.667 0.00 0.00 0.00 4.35
409 410 2.819595 CAACCATCCCCTCGTGCG 60.820 66.667 0.00 0.00 0.00 5.34
461 462 4.745116 TCCAGAGGAGAGTCCACG 57.255 61.111 0.00 0.00 39.61 4.94
471 472 3.053849 GAGTCCACGGAGGCGAGAC 62.054 68.421 0.00 0.00 37.29 3.36
472 473 4.477975 GTCCACGGAGGCGAGACG 62.478 72.222 0.00 0.00 37.29 4.18
1255 1273 2.123640 CTCTCCTCCCTCGTCCCC 60.124 72.222 0.00 0.00 0.00 4.81
1257 1275 3.756783 CTCCTCCCTCGTCCCCCT 61.757 72.222 0.00 0.00 0.00 4.79
1708 1729 3.002791 GTGCATCTTCGGTCTGATTCAA 58.997 45.455 0.00 0.00 0.00 2.69
1709 1730 3.624861 GTGCATCTTCGGTCTGATTCAAT 59.375 43.478 0.00 0.00 0.00 2.57
1734 1757 2.735823 GCCGCTCAATTCATTCATTCC 58.264 47.619 0.00 0.00 0.00 3.01
1769 1796 6.040278 TGCTTGTACAAATGGAAGATTGACAA 59.960 34.615 10.03 0.00 31.82 3.18
1772 1799 9.480053 CTTGTACAAATGGAAGATTGACAATTT 57.520 29.630 10.03 0.00 32.05 1.82
1773 1800 8.815141 TGTACAAATGGAAGATTGACAATTTG 57.185 30.769 1.39 4.61 34.88 2.32
1774 1801 8.637099 TGTACAAATGGAAGATTGACAATTTGA 58.363 29.630 12.69 0.00 33.50 2.69
1775 1802 7.951530 ACAAATGGAAGATTGACAATTTGAC 57.048 32.000 12.69 0.00 33.50 3.18
1776 1803 7.499292 ACAAATGGAAGATTGACAATTTGACA 58.501 30.769 12.69 0.00 33.50 3.58
1777 1804 8.152246 ACAAATGGAAGATTGACAATTTGACAT 58.848 29.630 12.69 8.19 33.50 3.06
1778 1805 8.995220 CAAATGGAAGATTGACAATTTGACATT 58.005 29.630 2.79 8.30 31.59 2.71
1779 1806 9.563748 AAATGGAAGATTGACAATTTGACATTT 57.436 25.926 18.31 18.31 0.00 2.32
1780 1807 8.767478 ATGGAAGATTGACAATTTGACATTTC 57.233 30.769 2.79 7.73 0.00 2.17
1781 1808 7.724287 TGGAAGATTGACAATTTGACATTTCA 58.276 30.769 2.79 0.00 0.00 2.69
1782 1809 8.369424 TGGAAGATTGACAATTTGACATTTCAT 58.631 29.630 2.79 0.00 0.00 2.57
1798 1825 5.356190 ACATTTCATTTCTCTGATGATGCGT 59.644 36.000 0.00 0.00 33.82 5.24
1869 1896 0.681564 TGCAAACCGGGCCGAATTAT 60.682 50.000 30.79 5.61 0.00 1.28
1957 1985 3.137533 GAGAAGCATAGATTGTGAGGGC 58.862 50.000 0.00 0.00 0.00 5.19
1958 1986 1.869767 GAAGCATAGATTGTGAGGGCG 59.130 52.381 0.00 0.00 0.00 6.13
1960 1988 1.202580 AGCATAGATTGTGAGGGCGAC 60.203 52.381 0.00 0.00 0.00 5.19
1961 1989 1.491670 CATAGATTGTGAGGGCGACG 58.508 55.000 0.00 0.00 0.00 5.12
1962 1990 1.067060 CATAGATTGTGAGGGCGACGA 59.933 52.381 0.00 0.00 0.00 4.20
1963 1991 0.454600 TAGATTGTGAGGGCGACGAC 59.545 55.000 0.00 0.00 0.00 4.34
1964 1992 2.126071 ATTGTGAGGGCGACGACG 60.126 61.111 2.12 2.12 42.93 5.12
1965 1993 2.814183 GATTGTGAGGGCGACGACGT 62.814 60.000 9.33 0.00 41.98 4.34
1966 1994 2.814183 ATTGTGAGGGCGACGACGTC 62.814 60.000 18.04 18.04 43.86 4.34
2019 2048 0.166814 GTGCTGAATTGCTCGGTGAC 59.833 55.000 0.00 0.00 32.37 3.67
2029 2058 4.471904 TTGCTCGGTGACTGAAATCTAT 57.528 40.909 0.00 0.00 0.00 1.98
2052 2081 5.971763 TCAACTGTGCATAACCAAGTTTTT 58.028 33.333 0.00 0.00 0.00 1.94
2053 2082 6.039616 TCAACTGTGCATAACCAAGTTTTTC 58.960 36.000 0.00 0.00 0.00 2.29
2054 2083 5.590530 ACTGTGCATAACCAAGTTTTTCA 57.409 34.783 0.00 0.00 0.00 2.69
2055 2084 5.591099 ACTGTGCATAACCAAGTTTTTCAG 58.409 37.500 0.00 0.00 0.00 3.02
2056 2085 4.942852 TGTGCATAACCAAGTTTTTCAGG 58.057 39.130 0.00 0.00 0.00 3.86
2127 2157 7.701078 GTGTATATAGGTTAGCATACGACCATG 59.299 40.741 0.00 0.00 35.89 3.66
2129 2159 3.179443 AGGTTAGCATACGACCATGTG 57.821 47.619 0.00 0.00 35.89 3.21
2147 2177 6.434028 ACCATGTGAACAATGTAACTTAGCAT 59.566 34.615 0.00 0.00 0.00 3.79
2207 2237 1.202976 AGGTTTGATCCTGCACAAGCT 60.203 47.619 2.52 0.00 42.74 3.74
2215 2245 1.908619 TCCTGCACAAGCTCTATTGGA 59.091 47.619 0.00 0.00 42.74 3.53
2239 2269 3.117701 TCACTGTCAAATGGGTGGAGAAA 60.118 43.478 0.00 0.00 0.00 2.52
2247 2277 6.992123 GTCAAATGGGTGGAGAAAAGAAAAAT 59.008 34.615 0.00 0.00 0.00 1.82
2248 2278 7.171508 GTCAAATGGGTGGAGAAAAGAAAAATC 59.828 37.037 0.00 0.00 0.00 2.17
2250 2280 4.814967 TGGGTGGAGAAAAGAAAAATCCT 58.185 39.130 0.00 0.00 0.00 3.24
2251 2281 5.959512 TGGGTGGAGAAAAGAAAAATCCTA 58.040 37.500 0.00 0.00 0.00 2.94
2252 2282 6.377912 TGGGTGGAGAAAAGAAAAATCCTAA 58.622 36.000 0.00 0.00 0.00 2.69
2253 2283 6.493458 TGGGTGGAGAAAAGAAAAATCCTAAG 59.507 38.462 0.00 0.00 0.00 2.18
2276 2306 4.214980 ACAACTGATTTTGTTCTGAGCG 57.785 40.909 0.00 0.00 36.22 5.03
2277 2307 2.975851 CAACTGATTTTGTTCTGAGCGC 59.024 45.455 0.00 0.00 0.00 5.92
2278 2308 2.498167 ACTGATTTTGTTCTGAGCGCT 58.502 42.857 11.27 11.27 0.00 5.92
2279 2309 3.664107 ACTGATTTTGTTCTGAGCGCTA 58.336 40.909 11.50 0.00 0.00 4.26
2280 2310 3.433615 ACTGATTTTGTTCTGAGCGCTAC 59.566 43.478 11.50 5.27 0.00 3.58
2281 2311 3.398406 TGATTTTGTTCTGAGCGCTACA 58.602 40.909 11.50 8.59 0.00 2.74
2282 2312 3.433274 TGATTTTGTTCTGAGCGCTACAG 59.567 43.478 22.90 22.90 36.80 2.74
2283 2313 2.526304 TTTGTTCTGAGCGCTACAGT 57.474 45.000 25.70 1.48 36.81 3.55
2284 2314 2.526304 TTGTTCTGAGCGCTACAGTT 57.474 45.000 25.70 0.77 36.81 3.16
2285 2315 3.653539 TTGTTCTGAGCGCTACAGTTA 57.346 42.857 25.70 17.02 36.81 2.24
2286 2316 3.868757 TGTTCTGAGCGCTACAGTTAT 57.131 42.857 25.70 0.00 36.81 1.89
2287 2317 4.976224 TGTTCTGAGCGCTACAGTTATA 57.024 40.909 25.70 15.77 36.81 0.98
2288 2318 4.921547 TGTTCTGAGCGCTACAGTTATAG 58.078 43.478 25.70 10.65 36.81 1.31
2289 2319 4.398358 TGTTCTGAGCGCTACAGTTATAGT 59.602 41.667 25.70 0.00 36.81 2.12
2290 2320 5.587443 TGTTCTGAGCGCTACAGTTATAGTA 59.413 40.000 25.70 10.55 36.81 1.82
2291 2321 6.094464 TGTTCTGAGCGCTACAGTTATAGTAA 59.906 38.462 25.70 14.36 36.81 2.24
2292 2322 6.057627 TCTGAGCGCTACAGTTATAGTAAC 57.942 41.667 25.70 6.43 36.81 2.50
2293 2323 5.587443 TCTGAGCGCTACAGTTATAGTAACA 59.413 40.000 25.70 10.09 36.81 2.41
2294 2324 6.262496 TCTGAGCGCTACAGTTATAGTAACAT 59.738 38.462 25.70 0.00 36.81 2.71
2295 2325 6.436261 TGAGCGCTACAGTTATAGTAACATC 58.564 40.000 11.50 0.00 0.00 3.06
2296 2326 6.262496 TGAGCGCTACAGTTATAGTAACATCT 59.738 38.462 11.50 0.00 0.00 2.90
2299 2329 8.627403 AGCGCTACAGTTATAGTAACATCTAAA 58.373 33.333 8.99 0.00 0.00 1.85
2328 2378 9.975218 ATGATATCTGAATCCATTCATCAATCA 57.025 29.630 15.68 15.68 44.92 2.57
2339 2389 9.976511 ATCCATTCATCAATCAACAACATATTC 57.023 29.630 0.00 0.00 0.00 1.75
2340 2390 9.192642 TCCATTCATCAATCAACAACATATTCT 57.807 29.630 0.00 0.00 0.00 2.40
2341 2391 9.811995 CCATTCATCAATCAACAACATATTCTT 57.188 29.630 0.00 0.00 0.00 2.52
2344 2394 8.812513 TCATCAATCAACAACATATTCTTCCT 57.187 30.769 0.00 0.00 0.00 3.36
2345 2395 8.896744 TCATCAATCAACAACATATTCTTCCTC 58.103 33.333 0.00 0.00 0.00 3.71
2766 2834 4.625028 GGTACCTGTACCGGATTATTGTC 58.375 47.826 9.46 0.00 45.21 3.18
2887 2961 1.282157 GGTAAGGCCACCTGAAGATGT 59.718 52.381 5.01 0.00 35.55 3.06
2941 3015 7.111466 ACGTAGGAGTAGAACTAGATGAAACT 58.889 38.462 0.00 0.00 0.00 2.66
2944 3018 7.176589 AGGAGTAGAACTAGATGAAACTTGG 57.823 40.000 0.00 0.00 0.00 3.61
2945 3019 6.155393 AGGAGTAGAACTAGATGAAACTTGGG 59.845 42.308 0.00 0.00 0.00 4.12
3054 3128 5.379732 AAGAATCAGGTAGATAGCGCTAC 57.620 43.478 21.49 9.69 39.97 3.58
3059 3133 3.569548 CAGGTAGATAGCGCTACATGTG 58.430 50.000 21.49 8.96 44.03 3.21
3085 3159 7.770366 TCTAGAATACACACTGTTGGTAAGA 57.230 36.000 0.00 0.00 0.00 2.10
3160 3248 4.462483 TCCAGATGTTTTGGATAAACTGCC 59.538 41.667 0.00 0.00 39.74 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.446889 CCAAATCCCCTCCAATCCTCTTAG 60.447 50.000 0.00 0.00 0.00 2.18
1 2 3.463329 CCAAATCCCCTCCAATCCTCTTA 59.537 47.826 0.00 0.00 0.00 2.10
2 3 2.245806 CCAAATCCCCTCCAATCCTCTT 59.754 50.000 0.00 0.00 0.00 2.85
3 4 1.855599 CCAAATCCCCTCCAATCCTCT 59.144 52.381 0.00 0.00 0.00 3.69
4 5 1.133356 CCCAAATCCCCTCCAATCCTC 60.133 57.143 0.00 0.00 0.00 3.71
5 6 0.936691 CCCAAATCCCCTCCAATCCT 59.063 55.000 0.00 0.00 0.00 3.24
6 7 0.105504 CCCCAAATCCCCTCCAATCC 60.106 60.000 0.00 0.00 0.00 3.01
7 8 0.105504 CCCCCAAATCCCCTCCAATC 60.106 60.000 0.00 0.00 0.00 2.67
8 9 2.026945 CCCCCAAATCCCCTCCAAT 58.973 57.895 0.00 0.00 0.00 3.16
9 10 3.531961 CCCCCAAATCCCCTCCAA 58.468 61.111 0.00 0.00 0.00 3.53
23 24 4.503714 TCATCTACAAGTCAAATCCCCC 57.496 45.455 0.00 0.00 0.00 5.40
24 25 6.122277 TGAATCATCTACAAGTCAAATCCCC 58.878 40.000 0.00 0.00 0.00 4.81
25 26 7.630242 TTGAATCATCTACAAGTCAAATCCC 57.370 36.000 0.00 0.00 0.00 3.85
26 27 8.348507 GGATTGAATCATCTACAAGTCAAATCC 58.651 37.037 7.56 0.00 0.00 3.01
27 28 8.896744 TGGATTGAATCATCTACAAGTCAAATC 58.103 33.333 7.56 0.00 0.00 2.17
28 29 8.680903 GTGGATTGAATCATCTACAAGTCAAAT 58.319 33.333 7.56 0.00 0.00 2.32
29 30 7.121168 GGTGGATTGAATCATCTACAAGTCAAA 59.879 37.037 7.56 0.00 31.06 2.69
30 31 6.599244 GGTGGATTGAATCATCTACAAGTCAA 59.401 38.462 7.56 0.00 31.06 3.18
31 32 6.070021 AGGTGGATTGAATCATCTACAAGTCA 60.070 38.462 7.56 0.00 31.06 3.41
32 33 6.352516 AGGTGGATTGAATCATCTACAAGTC 58.647 40.000 7.56 0.00 31.06 3.01
33 34 6.070021 TGAGGTGGATTGAATCATCTACAAGT 60.070 38.462 7.56 0.00 31.06 3.16
34 35 6.351711 TGAGGTGGATTGAATCATCTACAAG 58.648 40.000 7.56 0.00 31.06 3.16
35 36 6.312141 TGAGGTGGATTGAATCATCTACAA 57.688 37.500 7.56 0.00 31.06 2.41
36 37 5.955961 TGAGGTGGATTGAATCATCTACA 57.044 39.130 7.56 0.00 31.06 2.74
37 38 6.429385 GGATTGAGGTGGATTGAATCATCTAC 59.571 42.308 7.56 0.79 0.00 2.59
38 39 6.466326 GGGATTGAGGTGGATTGAATCATCTA 60.466 42.308 7.56 0.00 0.00 1.98
39 40 5.383476 GGATTGAGGTGGATTGAATCATCT 58.617 41.667 7.56 1.08 0.00 2.90
40 41 4.522022 GGGATTGAGGTGGATTGAATCATC 59.478 45.833 7.56 0.00 0.00 2.92
41 42 4.169461 AGGGATTGAGGTGGATTGAATCAT 59.831 41.667 7.56 0.00 0.00 2.45
42 43 3.528905 AGGGATTGAGGTGGATTGAATCA 59.471 43.478 7.56 0.00 0.00 2.57
43 44 3.887716 CAGGGATTGAGGTGGATTGAATC 59.112 47.826 0.00 0.00 0.00 2.52
44 45 3.270433 ACAGGGATTGAGGTGGATTGAAT 59.730 43.478 0.00 0.00 0.00 2.57
45 46 2.649312 ACAGGGATTGAGGTGGATTGAA 59.351 45.455 0.00 0.00 0.00 2.69
46 47 2.239654 GACAGGGATTGAGGTGGATTGA 59.760 50.000 0.00 0.00 0.00 2.57
47 48 2.025981 TGACAGGGATTGAGGTGGATTG 60.026 50.000 0.00 0.00 0.00 2.67
48 49 2.278245 TGACAGGGATTGAGGTGGATT 58.722 47.619 0.00 0.00 0.00 3.01
49 50 1.971149 TGACAGGGATTGAGGTGGAT 58.029 50.000 0.00 0.00 0.00 3.41
50 51 1.741028 TTGACAGGGATTGAGGTGGA 58.259 50.000 0.00 0.00 0.00 4.02
51 52 2.558359 GTTTTGACAGGGATTGAGGTGG 59.442 50.000 0.00 0.00 0.00 4.61
52 53 2.558359 GGTTTTGACAGGGATTGAGGTG 59.442 50.000 0.00 0.00 0.00 4.00
53 54 2.490902 GGGTTTTGACAGGGATTGAGGT 60.491 50.000 0.00 0.00 0.00 3.85
54 55 2.171003 GGGTTTTGACAGGGATTGAGG 58.829 52.381 0.00 0.00 0.00 3.86
55 56 2.171003 GGGGTTTTGACAGGGATTGAG 58.829 52.381 0.00 0.00 0.00 3.02
56 57 1.786441 AGGGGTTTTGACAGGGATTGA 59.214 47.619 0.00 0.00 0.00 2.57
57 58 2.171003 GAGGGGTTTTGACAGGGATTG 58.829 52.381 0.00 0.00 0.00 2.67
58 59 1.077169 GGAGGGGTTTTGACAGGGATT 59.923 52.381 0.00 0.00 0.00 3.01
59 60 0.704664 GGAGGGGTTTTGACAGGGAT 59.295 55.000 0.00 0.00 0.00 3.85
60 61 0.699577 TGGAGGGGTTTTGACAGGGA 60.700 55.000 0.00 0.00 0.00 4.20
61 62 0.539669 GTGGAGGGGTTTTGACAGGG 60.540 60.000 0.00 0.00 0.00 4.45
62 63 0.184933 TGTGGAGGGGTTTTGACAGG 59.815 55.000 0.00 0.00 0.00 4.00
63 64 1.681264 GTTGTGGAGGGGTTTTGACAG 59.319 52.381 0.00 0.00 0.00 3.51
64 65 1.686741 GGTTGTGGAGGGGTTTTGACA 60.687 52.381 0.00 0.00 0.00 3.58
65 66 1.037493 GGTTGTGGAGGGGTTTTGAC 58.963 55.000 0.00 0.00 0.00 3.18
66 67 0.105913 GGGTTGTGGAGGGGTTTTGA 60.106 55.000 0.00 0.00 0.00 2.69
67 68 0.105709 AGGGTTGTGGAGGGGTTTTG 60.106 55.000 0.00 0.00 0.00 2.44
68 69 0.105709 CAGGGTTGTGGAGGGGTTTT 60.106 55.000 0.00 0.00 0.00 2.43
69 70 1.293683 ACAGGGTTGTGGAGGGGTTT 61.294 55.000 0.00 0.00 35.83 3.27
70 71 1.699930 ACAGGGTTGTGGAGGGGTT 60.700 57.895 0.00 0.00 35.83 4.11
71 72 2.038762 ACAGGGTTGTGGAGGGGT 60.039 61.111 0.00 0.00 35.83 4.95
72 73 1.715019 TTGACAGGGTTGTGGAGGGG 61.715 60.000 0.00 0.00 37.76 4.79
73 74 0.537371 GTTGACAGGGTTGTGGAGGG 60.537 60.000 0.00 0.00 37.76 4.30
74 75 0.537371 GGTTGACAGGGTTGTGGAGG 60.537 60.000 0.00 0.00 37.76 4.30
75 76 0.884704 CGGTTGACAGGGTTGTGGAG 60.885 60.000 0.00 0.00 37.76 3.86
76 77 1.147376 CGGTTGACAGGGTTGTGGA 59.853 57.895 0.00 0.00 37.76 4.02
77 78 0.464735 TTCGGTTGACAGGGTTGTGG 60.465 55.000 0.00 0.00 37.76 4.17
78 79 0.661020 GTTCGGTTGACAGGGTTGTG 59.339 55.000 0.00 0.00 37.76 3.33
79 80 0.253610 TGTTCGGTTGACAGGGTTGT 59.746 50.000 0.00 0.00 41.18 3.32
80 81 1.266718 CATGTTCGGTTGACAGGGTTG 59.733 52.381 0.00 0.00 0.00 3.77
81 82 1.604604 CATGTTCGGTTGACAGGGTT 58.395 50.000 0.00 0.00 0.00 4.11
82 83 0.250727 CCATGTTCGGTTGACAGGGT 60.251 55.000 0.16 0.00 42.39 4.34
83 84 2.555123 CCATGTTCGGTTGACAGGG 58.445 57.895 0.00 0.00 41.80 4.45
84 85 1.586154 GGCCATGTTCGGTTGACAGG 61.586 60.000 0.00 0.00 0.00 4.00
85 86 0.606401 AGGCCATGTTCGGTTGACAG 60.606 55.000 5.01 0.00 0.00 3.51
86 87 0.179004 AAGGCCATGTTCGGTTGACA 60.179 50.000 5.01 0.00 0.00 3.58
87 88 1.737793 CTAAGGCCATGTTCGGTTGAC 59.262 52.381 5.01 0.00 0.00 3.18
88 89 1.349688 ACTAAGGCCATGTTCGGTTGA 59.650 47.619 5.01 0.00 0.00 3.18
89 90 1.468520 CACTAAGGCCATGTTCGGTTG 59.531 52.381 5.01 0.00 0.00 3.77
90 91 1.613255 CCACTAAGGCCATGTTCGGTT 60.613 52.381 5.01 0.00 0.00 4.44
91 92 0.035439 CCACTAAGGCCATGTTCGGT 60.035 55.000 5.01 0.00 0.00 4.69
92 93 0.251916 TCCACTAAGGCCATGTTCGG 59.748 55.000 5.01 0.00 37.29 4.30
93 94 1.338674 TGTCCACTAAGGCCATGTTCG 60.339 52.381 5.01 0.00 37.29 3.95
94 95 2.084546 GTGTCCACTAAGGCCATGTTC 58.915 52.381 5.01 0.00 37.29 3.18
95 96 1.423541 TGTGTCCACTAAGGCCATGTT 59.576 47.619 5.01 0.00 37.29 2.71
96 97 1.064003 TGTGTCCACTAAGGCCATGT 58.936 50.000 5.01 0.00 37.29 3.21
97 98 2.292267 GATGTGTCCACTAAGGCCATG 58.708 52.381 5.01 0.00 37.29 3.66
98 99 1.212935 GGATGTGTCCACTAAGGCCAT 59.787 52.381 5.01 0.00 44.42 4.40
99 100 0.618458 GGATGTGTCCACTAAGGCCA 59.382 55.000 5.01 0.00 44.42 5.36
100 101 3.478540 GGATGTGTCCACTAAGGCC 57.521 57.895 0.00 0.00 44.42 5.19
109 110 1.906574 TCAAGGGTAGTGGATGTGTCC 59.093 52.381 0.00 0.00 45.31 4.02
110 111 3.695830 TTCAAGGGTAGTGGATGTGTC 57.304 47.619 0.00 0.00 0.00 3.67
111 112 4.142038 GTTTTCAAGGGTAGTGGATGTGT 58.858 43.478 0.00 0.00 0.00 3.72
112 113 3.506067 GGTTTTCAAGGGTAGTGGATGTG 59.494 47.826 0.00 0.00 0.00 3.21
113 114 3.139397 TGGTTTTCAAGGGTAGTGGATGT 59.861 43.478 0.00 0.00 0.00 3.06
114 115 3.761897 TGGTTTTCAAGGGTAGTGGATG 58.238 45.455 0.00 0.00 0.00 3.51
115 116 4.044065 TCATGGTTTTCAAGGGTAGTGGAT 59.956 41.667 0.00 0.00 0.00 3.41
116 117 3.396276 TCATGGTTTTCAAGGGTAGTGGA 59.604 43.478 0.00 0.00 0.00 4.02
117 118 3.761897 TCATGGTTTTCAAGGGTAGTGG 58.238 45.455 0.00 0.00 0.00 4.00
118 119 6.828273 TCATATCATGGTTTTCAAGGGTAGTG 59.172 38.462 0.00 0.00 0.00 2.74
119 120 6.969043 TCATATCATGGTTTTCAAGGGTAGT 58.031 36.000 0.00 0.00 0.00 2.73
120 121 7.880160 TTCATATCATGGTTTTCAAGGGTAG 57.120 36.000 0.00 0.00 0.00 3.18
121 122 7.893302 AGTTTCATATCATGGTTTTCAAGGGTA 59.107 33.333 0.00 0.00 0.00 3.69
122 123 6.725834 AGTTTCATATCATGGTTTTCAAGGGT 59.274 34.615 0.00 0.00 0.00 4.34
123 124 7.174107 AGTTTCATATCATGGTTTTCAAGGG 57.826 36.000 0.00 0.00 0.00 3.95
124 125 9.740239 CATAGTTTCATATCATGGTTTTCAAGG 57.260 33.333 0.00 0.00 0.00 3.61
128 129 9.736023 GGAACATAGTTTCATATCATGGTTTTC 57.264 33.333 0.00 0.00 0.00 2.29
129 130 9.479549 AGGAACATAGTTTCATATCATGGTTTT 57.520 29.630 0.00 0.00 0.00 2.43
130 131 9.479549 AAGGAACATAGTTTCATATCATGGTTT 57.520 29.630 0.00 0.00 0.00 3.27
131 132 8.906867 CAAGGAACATAGTTTCATATCATGGTT 58.093 33.333 0.00 0.00 0.00 3.67
132 133 8.055181 ACAAGGAACATAGTTTCATATCATGGT 58.945 33.333 0.00 0.00 0.00 3.55
133 134 8.455903 ACAAGGAACATAGTTTCATATCATGG 57.544 34.615 0.00 0.00 0.00 3.66
136 137 9.952030 TTGTACAAGGAACATAGTTTCATATCA 57.048 29.630 3.59 0.00 0.00 2.15
139 140 9.005777 GGTTTGTACAAGGAACATAGTTTCATA 57.994 33.333 8.56 0.00 0.00 2.15
140 141 7.504238 TGGTTTGTACAAGGAACATAGTTTCAT 59.496 33.333 8.56 0.00 0.00 2.57
141 142 6.829298 TGGTTTGTACAAGGAACATAGTTTCA 59.171 34.615 8.56 0.00 0.00 2.69
142 143 7.136772 GTGGTTTGTACAAGGAACATAGTTTC 58.863 38.462 8.56 0.00 0.00 2.78
143 144 6.040054 GGTGGTTTGTACAAGGAACATAGTTT 59.960 38.462 8.56 0.00 0.00 2.66
144 145 5.533528 GGTGGTTTGTACAAGGAACATAGTT 59.466 40.000 8.56 0.00 0.00 2.24
145 146 5.067954 GGTGGTTTGTACAAGGAACATAGT 58.932 41.667 8.56 0.00 0.00 2.12
146 147 4.457949 GGGTGGTTTGTACAAGGAACATAG 59.542 45.833 8.56 0.00 0.00 2.23
147 148 4.400120 GGGTGGTTTGTACAAGGAACATA 58.600 43.478 8.56 0.00 0.00 2.29
148 149 3.227614 GGGTGGTTTGTACAAGGAACAT 58.772 45.455 8.56 0.00 0.00 2.71
149 150 2.657143 GGGTGGTTTGTACAAGGAACA 58.343 47.619 8.56 0.81 0.00 3.18
150 151 1.958579 GGGGTGGTTTGTACAAGGAAC 59.041 52.381 8.56 4.42 0.00 3.62
151 152 1.477195 CGGGGTGGTTTGTACAAGGAA 60.477 52.381 8.56 0.00 0.00 3.36
152 153 0.108963 CGGGGTGGTTTGTACAAGGA 59.891 55.000 8.56 0.00 0.00 3.36
153 154 0.891904 CCGGGGTGGTTTGTACAAGG 60.892 60.000 8.56 0.13 0.00 3.61
154 155 0.108963 TCCGGGGTGGTTTGTACAAG 59.891 55.000 8.56 0.00 39.52 3.16
155 156 0.108963 CTCCGGGGTGGTTTGTACAA 59.891 55.000 3.59 3.59 39.52 2.41
156 157 1.055551 ACTCCGGGGTGGTTTGTACA 61.056 55.000 5.91 0.00 39.52 2.90
157 158 0.321034 GACTCCGGGGTGGTTTGTAC 60.321 60.000 14.62 0.00 39.52 2.90
158 159 1.818959 CGACTCCGGGGTGGTTTGTA 61.819 60.000 14.62 0.00 39.52 2.41
159 160 2.833957 GACTCCGGGGTGGTTTGT 59.166 61.111 14.62 0.00 39.52 2.83
160 161 2.358247 CGACTCCGGGGTGGTTTG 60.358 66.667 14.62 0.00 39.52 2.93
185 186 2.546368 TCATGTCCTGTAACGTTTGCAC 59.454 45.455 5.91 0.00 0.00 4.57
186 187 2.839975 TCATGTCCTGTAACGTTTGCA 58.160 42.857 5.91 5.57 0.00 4.08
187 188 3.889196 TTCATGTCCTGTAACGTTTGC 57.111 42.857 5.91 0.30 0.00 3.68
188 189 4.454161 TCCATTCATGTCCTGTAACGTTTG 59.546 41.667 5.91 0.00 0.00 2.93
189 190 4.647611 TCCATTCATGTCCTGTAACGTTT 58.352 39.130 5.91 0.00 0.00 3.60
190 191 4.280436 TCCATTCATGTCCTGTAACGTT 57.720 40.909 5.88 5.88 0.00 3.99
191 192 3.973206 TCCATTCATGTCCTGTAACGT 57.027 42.857 0.00 0.00 0.00 3.99
192 193 3.002656 GCATCCATTCATGTCCTGTAACG 59.997 47.826 0.00 0.00 0.00 3.18
193 194 3.947196 TGCATCCATTCATGTCCTGTAAC 59.053 43.478 0.00 0.00 0.00 2.50
194 195 3.947196 GTGCATCCATTCATGTCCTGTAA 59.053 43.478 0.00 0.00 0.00 2.41
195 196 3.544684 GTGCATCCATTCATGTCCTGTA 58.455 45.455 0.00 0.00 0.00 2.74
196 197 2.372264 GTGCATCCATTCATGTCCTGT 58.628 47.619 0.00 0.00 0.00 4.00
197 198 1.332686 CGTGCATCCATTCATGTCCTG 59.667 52.381 0.00 0.00 0.00 3.86
198 199 1.210234 TCGTGCATCCATTCATGTCCT 59.790 47.619 0.00 0.00 0.00 3.85
199 200 1.667236 TCGTGCATCCATTCATGTCC 58.333 50.000 0.00 0.00 0.00 4.02
200 201 3.313249 TGAATCGTGCATCCATTCATGTC 59.687 43.478 11.76 0.00 32.72 3.06
201 202 3.281158 TGAATCGTGCATCCATTCATGT 58.719 40.909 11.76 0.00 32.72 3.21
202 203 3.974871 TGAATCGTGCATCCATTCATG 57.025 42.857 11.76 0.00 32.72 3.07
203 204 5.286438 CAAATGAATCGTGCATCCATTCAT 58.714 37.500 18.19 18.19 45.21 2.57
204 205 4.440387 CCAAATGAATCGTGCATCCATTCA 60.440 41.667 16.01 16.01 40.07 2.57
205 206 4.046462 CCAAATGAATCGTGCATCCATTC 58.954 43.478 0.00 0.00 0.00 2.67
206 207 3.448301 ACCAAATGAATCGTGCATCCATT 59.552 39.130 0.00 0.00 0.00 3.16
207 208 3.025978 ACCAAATGAATCGTGCATCCAT 58.974 40.909 0.00 0.00 0.00 3.41
208 209 2.445427 ACCAAATGAATCGTGCATCCA 58.555 42.857 0.00 0.00 0.00 3.41
209 210 4.498009 CCTTACCAAATGAATCGTGCATCC 60.498 45.833 0.00 0.00 0.00 3.51
210 211 4.096382 ACCTTACCAAATGAATCGTGCATC 59.904 41.667 0.00 0.00 0.00 3.91
211 212 4.016444 ACCTTACCAAATGAATCGTGCAT 58.984 39.130 0.00 0.00 0.00 3.96
212 213 3.190327 CACCTTACCAAATGAATCGTGCA 59.810 43.478 0.00 0.00 0.00 4.57
213 214 3.438781 TCACCTTACCAAATGAATCGTGC 59.561 43.478 0.00 0.00 0.00 5.34
214 215 5.621197 TTCACCTTACCAAATGAATCGTG 57.379 39.130 0.00 0.00 0.00 4.35
215 216 5.334569 CGTTTCACCTTACCAAATGAATCGT 60.335 40.000 7.70 0.00 38.51 3.73
216 217 5.086058 CGTTTCACCTTACCAAATGAATCG 58.914 41.667 0.00 0.00 37.70 3.34
217 218 5.399013 CCGTTTCACCTTACCAAATGAATC 58.601 41.667 0.00 0.00 31.45 2.52
218 219 4.321675 GCCGTTTCACCTTACCAAATGAAT 60.322 41.667 0.00 0.00 31.45 2.57
219 220 3.004944 GCCGTTTCACCTTACCAAATGAA 59.995 43.478 0.00 0.00 0.00 2.57
220 221 2.554893 GCCGTTTCACCTTACCAAATGA 59.445 45.455 0.00 0.00 0.00 2.57
221 222 2.294791 TGCCGTTTCACCTTACCAAATG 59.705 45.455 0.00 0.00 0.00 2.32
222 223 2.588620 TGCCGTTTCACCTTACCAAAT 58.411 42.857 0.00 0.00 0.00 2.32
223 224 2.054232 TGCCGTTTCACCTTACCAAA 57.946 45.000 0.00 0.00 0.00 3.28
224 225 2.054232 TTGCCGTTTCACCTTACCAA 57.946 45.000 0.00 0.00 0.00 3.67
225 226 1.677052 GTTTGCCGTTTCACCTTACCA 59.323 47.619 0.00 0.00 0.00 3.25
226 227 1.001048 GGTTTGCCGTTTCACCTTACC 60.001 52.381 0.00 0.00 0.00 2.85
227 228 2.410785 GGTTTGCCGTTTCACCTTAC 57.589 50.000 0.00 0.00 0.00 2.34
239 240 1.534163 GGTCTTACTCAACGGTTTGCC 59.466 52.381 0.00 0.00 32.17 4.52
240 241 1.193874 CGGTCTTACTCAACGGTTTGC 59.806 52.381 0.00 0.00 32.17 3.68
241 242 2.220133 CACGGTCTTACTCAACGGTTTG 59.780 50.000 0.00 0.00 0.00 2.93
242 243 2.101249 TCACGGTCTTACTCAACGGTTT 59.899 45.455 0.00 0.00 0.00 3.27
243 244 1.682854 TCACGGTCTTACTCAACGGTT 59.317 47.619 0.00 0.00 0.00 4.44
244 245 1.321474 TCACGGTCTTACTCAACGGT 58.679 50.000 0.00 0.00 0.00 4.83
245 246 2.427232 TTCACGGTCTTACTCAACGG 57.573 50.000 0.00 0.00 0.00 4.44
246 247 3.378339 AGTTTCACGGTCTTACTCAACG 58.622 45.455 0.00 0.00 0.00 4.10
247 248 8.430828 GTTAATAGTTTCACGGTCTTACTCAAC 58.569 37.037 0.00 0.00 0.00 3.18
248 249 7.326789 CGTTAATAGTTTCACGGTCTTACTCAA 59.673 37.037 0.00 0.00 30.64 3.02
249 250 6.803320 CGTTAATAGTTTCACGGTCTTACTCA 59.197 38.462 0.00 0.00 30.64 3.41
250 251 6.252228 CCGTTAATAGTTTCACGGTCTTACTC 59.748 42.308 1.36 0.00 44.10 2.59
251 252 6.095377 CCGTTAATAGTTTCACGGTCTTACT 58.905 40.000 1.36 0.00 44.10 2.24
252 253 6.323197 CCGTTAATAGTTTCACGGTCTTAC 57.677 41.667 1.36 0.00 44.10 2.34
259 260 6.530534 AGACAGATTCCGTTAATAGTTTCACG 59.469 38.462 0.00 0.00 33.34 4.35
260 261 7.829378 AGACAGATTCCGTTAATAGTTTCAC 57.171 36.000 0.00 0.00 0.00 3.18
261 262 7.699391 CGTAGACAGATTCCGTTAATAGTTTCA 59.301 37.037 0.00 0.00 0.00 2.69
262 263 7.699812 ACGTAGACAGATTCCGTTAATAGTTTC 59.300 37.037 0.00 0.00 0.00 2.78
263 264 7.542025 ACGTAGACAGATTCCGTTAATAGTTT 58.458 34.615 0.00 0.00 0.00 2.66
264 265 7.093322 ACGTAGACAGATTCCGTTAATAGTT 57.907 36.000 0.00 0.00 0.00 2.24
265 266 6.690194 ACGTAGACAGATTCCGTTAATAGT 57.310 37.500 0.00 0.00 0.00 2.12
266 267 7.859598 ACTACGTAGACAGATTCCGTTAATAG 58.140 38.462 28.74 0.00 33.32 1.73
267 268 7.792374 ACTACGTAGACAGATTCCGTTAATA 57.208 36.000 28.74 0.00 33.32 0.98
268 269 6.690194 ACTACGTAGACAGATTCCGTTAAT 57.310 37.500 28.74 0.00 33.32 1.40
269 270 6.317088 CAACTACGTAGACAGATTCCGTTAA 58.683 40.000 28.74 0.00 33.32 2.01
270 271 5.674569 GCAACTACGTAGACAGATTCCGTTA 60.675 44.000 28.74 0.00 33.32 3.18
271 272 4.730657 CAACTACGTAGACAGATTCCGTT 58.269 43.478 28.74 6.64 33.32 4.44
272 273 3.427233 GCAACTACGTAGACAGATTCCGT 60.427 47.826 28.74 0.00 35.68 4.69
273 274 3.106672 GCAACTACGTAGACAGATTCCG 58.893 50.000 28.74 3.19 0.00 4.30
274 275 4.106029 TGCAACTACGTAGACAGATTCC 57.894 45.455 28.74 3.29 0.00 3.01
275 276 5.162075 AGTTGCAACTACGTAGACAGATTC 58.838 41.667 30.25 12.42 37.52 2.52
276 277 5.135508 AGTTGCAACTACGTAGACAGATT 57.864 39.130 30.25 9.48 37.52 2.40
277 278 4.785511 AGTTGCAACTACGTAGACAGAT 57.214 40.909 30.25 12.15 37.52 2.90
278 279 4.579454 AAGTTGCAACTACGTAGACAGA 57.421 40.909 31.31 7.25 38.57 3.41
279 280 4.150098 GGAAAGTTGCAACTACGTAGACAG 59.850 45.833 31.31 17.22 38.57 3.51
280 281 4.053295 GGAAAGTTGCAACTACGTAGACA 58.947 43.478 31.31 19.06 38.57 3.41
281 282 4.053295 TGGAAAGTTGCAACTACGTAGAC 58.947 43.478 31.31 15.47 38.57 2.59
282 283 4.038282 TCTGGAAAGTTGCAACTACGTAGA 59.962 41.667 31.31 25.76 38.57 2.59
283 284 4.150098 GTCTGGAAAGTTGCAACTACGTAG 59.850 45.833 31.31 24.22 38.57 3.51
284 285 4.053295 GTCTGGAAAGTTGCAACTACGTA 58.947 43.478 31.31 17.15 38.57 3.57
285 286 2.870411 GTCTGGAAAGTTGCAACTACGT 59.130 45.455 31.31 19.55 38.57 3.57
286 287 3.059597 CAGTCTGGAAAGTTGCAACTACG 60.060 47.826 31.31 17.22 38.57 3.51
287 288 3.251004 CCAGTCTGGAAAGTTGCAACTAC 59.749 47.826 31.31 25.29 40.96 2.73
288 289 3.476552 CCAGTCTGGAAAGTTGCAACTA 58.523 45.455 31.31 15.49 40.96 2.24
289 290 2.301346 CCAGTCTGGAAAGTTGCAACT 58.699 47.619 26.36 26.36 40.96 3.16
290 291 1.338020 CCCAGTCTGGAAAGTTGCAAC 59.662 52.381 22.17 22.17 40.96 4.17
291 292 1.691196 CCCAGTCTGGAAAGTTGCAA 58.309 50.000 21.23 0.00 40.96 4.08
292 293 0.823356 GCCCAGTCTGGAAAGTTGCA 60.823 55.000 21.23 0.00 40.96 4.08
293 294 1.527433 GGCCCAGTCTGGAAAGTTGC 61.527 60.000 21.23 13.20 40.96 4.17
294 295 0.895559 GGGCCCAGTCTGGAAAGTTG 60.896 60.000 19.95 3.28 40.96 3.16
295 296 1.460699 GGGCCCAGTCTGGAAAGTT 59.539 57.895 19.95 0.00 40.96 2.66
296 297 2.895424 CGGGCCCAGTCTGGAAAGT 61.895 63.158 24.92 0.00 40.96 2.66
297 298 2.045926 CGGGCCCAGTCTGGAAAG 60.046 66.667 24.92 4.82 40.96 2.62
298 299 2.852075 ACGGGCCCAGTCTGGAAA 60.852 61.111 24.92 0.00 40.96 3.13
299 300 3.319198 GACGGGCCCAGTCTGGAA 61.319 66.667 28.64 0.00 40.96 3.53
302 303 3.066190 TACGACGGGCCCAGTCTG 61.066 66.667 30.81 26.61 36.53 3.51
303 304 3.066814 GTACGACGGGCCCAGTCT 61.067 66.667 30.81 23.23 36.53 3.24
304 305 4.139234 GGTACGACGGGCCCAGTC 62.139 72.222 27.11 27.11 35.41 3.51
324 325 2.791396 TACAACACGCTCGCGGAGAC 62.791 60.000 16.18 0.00 44.69 3.36
325 326 2.619165 TACAACACGCTCGCGGAGA 61.619 57.895 16.18 0.00 44.69 3.71
326 327 2.126618 TACAACACGCTCGCGGAG 60.127 61.111 16.18 10.01 44.69 4.63
327 328 2.429571 GTACAACACGCTCGCGGA 60.430 61.111 16.18 0.00 44.69 5.54
328 329 2.092291 ATGTACAACACGCTCGCGG 61.092 57.895 16.18 7.18 44.69 6.46
329 330 1.057208 CATGTACAACACGCTCGCG 59.943 57.895 10.06 10.06 46.03 5.87
330 331 0.999406 ATCATGTACAACACGCTCGC 59.001 50.000 0.00 0.00 0.00 5.03
331 332 2.279921 CAGATCATGTACAACACGCTCG 59.720 50.000 0.00 0.00 0.00 5.03
332 333 3.304559 GTCAGATCATGTACAACACGCTC 59.695 47.826 0.00 0.00 0.00 5.03
333 334 3.254060 GTCAGATCATGTACAACACGCT 58.746 45.455 0.00 0.00 0.00 5.07
334 335 2.028045 CGTCAGATCATGTACAACACGC 59.972 50.000 0.00 0.00 0.00 5.34
335 336 2.598637 CCGTCAGATCATGTACAACACG 59.401 50.000 0.00 1.00 0.00 4.49
336 337 2.348666 GCCGTCAGATCATGTACAACAC 59.651 50.000 0.00 0.00 0.00 3.32
337 338 2.616960 GCCGTCAGATCATGTACAACA 58.383 47.619 0.00 0.00 0.00 3.33
338 339 1.933853 GGCCGTCAGATCATGTACAAC 59.066 52.381 0.00 0.00 0.00 3.32
339 340 1.552792 TGGCCGTCAGATCATGTACAA 59.447 47.619 0.00 0.00 0.00 2.41
340 341 1.190643 TGGCCGTCAGATCATGTACA 58.809 50.000 0.00 0.00 0.00 2.90
341 342 2.138320 CATGGCCGTCAGATCATGTAC 58.862 52.381 0.00 0.00 34.12 2.90
342 343 1.541015 GCATGGCCGTCAGATCATGTA 60.541 52.381 0.00 0.00 39.17 2.29
343 344 0.816825 GCATGGCCGTCAGATCATGT 60.817 55.000 0.00 0.00 39.17 3.21
344 345 0.534427 AGCATGGCCGTCAGATCATG 60.534 55.000 0.00 0.00 39.74 3.07
345 346 0.534427 CAGCATGGCCGTCAGATCAT 60.534 55.000 0.00 0.00 0.00 2.45
346 347 1.153309 CAGCATGGCCGTCAGATCA 60.153 57.895 0.00 0.00 0.00 2.92
347 348 2.541120 GCAGCATGGCCGTCAGATC 61.541 63.158 0.00 0.00 35.86 2.75
348 349 2.515523 GCAGCATGGCCGTCAGAT 60.516 61.111 0.00 0.00 35.86 2.90
349 350 4.019312 TGCAGCATGGCCGTCAGA 62.019 61.111 0.00 0.00 35.86 3.27
350 351 3.807538 GTGCAGCATGGCCGTCAG 61.808 66.667 0.00 0.00 35.86 3.51
351 352 3.848301 AAGTGCAGCATGGCCGTCA 62.848 57.895 0.00 0.00 35.86 4.35
352 353 3.058160 AAGTGCAGCATGGCCGTC 61.058 61.111 0.00 0.00 35.86 4.79
353 354 3.367743 CAAGTGCAGCATGGCCGT 61.368 61.111 0.00 0.00 35.86 5.68
354 355 4.789075 GCAAGTGCAGCATGGCCG 62.789 66.667 0.00 0.00 41.59 6.13
355 356 2.444700 AAAGCAAGTGCAGCATGGCC 62.445 55.000 0.00 0.00 45.16 5.36
356 357 1.005394 AAAGCAAGTGCAGCATGGC 60.005 52.632 0.00 2.80 45.16 4.40
357 358 0.389426 GGAAAGCAAGTGCAGCATGG 60.389 55.000 0.00 0.00 45.16 3.66
358 359 0.389426 GGGAAAGCAAGTGCAGCATG 60.389 55.000 0.00 0.00 45.16 4.06
359 360 1.538687 GGGGAAAGCAAGTGCAGCAT 61.539 55.000 0.00 0.00 45.16 3.79
360 361 2.202395 GGGGAAAGCAAGTGCAGCA 61.202 57.895 6.00 0.00 45.16 4.41
361 362 2.653115 GGGGAAAGCAAGTGCAGC 59.347 61.111 6.00 0.00 45.16 5.25
362 363 2.629656 CGGGGGAAAGCAAGTGCAG 61.630 63.158 6.00 0.00 45.16 4.41
363 364 2.597217 CGGGGGAAAGCAAGTGCA 60.597 61.111 6.00 0.00 45.16 4.57
364 365 4.056125 GCGGGGGAAAGCAAGTGC 62.056 66.667 0.00 0.00 42.49 4.40
365 366 3.737172 CGCGGGGGAAAGCAAGTG 61.737 66.667 0.00 0.00 0.00 3.16
396 397 4.129737 ACGACGCACGAGGGGATG 62.130 66.667 9.43 0.00 45.77 3.51
397 398 4.129737 CACGACGCACGAGGGGAT 62.130 66.667 9.43 0.00 45.77 3.85
419 420 2.202492 CGAGGCTTCGTGAGACCG 60.202 66.667 10.50 0.00 41.84 4.79
451 452 2.750637 TCGCCTCCGTGGACTCTC 60.751 66.667 0.00 0.00 38.35 3.20
452 453 2.752238 CTCGCCTCCGTGGACTCT 60.752 66.667 0.00 0.00 38.35 3.24
453 454 2.750637 TCTCGCCTCCGTGGACTC 60.751 66.667 0.00 0.00 38.35 3.36
454 455 3.063084 GTCTCGCCTCCGTGGACT 61.063 66.667 0.00 0.00 38.35 3.85
455 456 4.477975 CGTCTCGCCTCCGTGGAC 62.478 72.222 0.00 0.00 38.35 4.02
539 540 2.031768 GGATCTGGAGGCGGATGC 59.968 66.667 0.00 0.00 41.71 3.91
664 673 1.450134 GTTAAGTTACGGGGCGGGG 60.450 63.158 0.00 0.00 0.00 5.73
1022 1034 4.115199 GGCGACCTCCATTGCCCT 62.115 66.667 0.00 0.00 42.69 5.19
1043 1061 2.018086 AGGAGGAGGAGGAGGAGGG 61.018 68.421 0.00 0.00 0.00 4.30
1046 1064 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1708 1729 3.272334 GAATTGAGCGGCGGCGAT 61.272 61.111 36.87 31.85 46.35 4.58
1709 1730 4.751093 TGAATTGAGCGGCGGCGA 62.751 61.111 36.87 15.10 46.35 5.54
1769 1796 9.803315 CATCATCAGAGAAATGAAATGTCAAAT 57.197 29.630 0.00 0.00 37.30 2.32
1772 1799 6.457799 CGCATCATCAGAGAAATGAAATGTCA 60.458 38.462 0.00 0.00 36.75 3.58
1773 1800 5.907945 CGCATCATCAGAGAAATGAAATGTC 59.092 40.000 0.00 0.00 36.75 3.06
1774 1801 5.356190 ACGCATCATCAGAGAAATGAAATGT 59.644 36.000 0.00 0.00 36.75 2.71
1775 1802 5.681543 CACGCATCATCAGAGAAATGAAATG 59.318 40.000 0.00 0.00 36.75 2.32
1776 1803 5.356190 ACACGCATCATCAGAGAAATGAAAT 59.644 36.000 0.00 0.00 36.75 2.17
1777 1804 4.696877 ACACGCATCATCAGAGAAATGAAA 59.303 37.500 0.00 0.00 36.75 2.69
1778 1805 4.093850 CACACGCATCATCAGAGAAATGAA 59.906 41.667 0.00 0.00 36.75 2.57
1779 1806 3.619929 CACACGCATCATCAGAGAAATGA 59.380 43.478 0.00 0.00 37.53 2.57
1780 1807 3.787805 GCACACGCATCATCAGAGAAATG 60.788 47.826 0.00 0.00 38.36 2.32
1781 1808 2.353889 GCACACGCATCATCAGAGAAAT 59.646 45.455 0.00 0.00 38.36 2.17
1782 1809 1.733912 GCACACGCATCATCAGAGAAA 59.266 47.619 0.00 0.00 38.36 2.52
1798 1825 1.782201 ATGGTCTTGAGCCCTGCACA 61.782 55.000 0.00 0.00 0.00 4.57
1944 1971 0.454600 GTCGTCGCCCTCACAATCTA 59.545 55.000 0.00 0.00 0.00 1.98
1961 1989 3.672255 TTCGACCGATGGCGACGTC 62.672 63.158 5.18 5.18 43.20 4.34
1962 1990 3.678717 CTTCGACCGATGGCGACGT 62.679 63.158 0.00 0.00 40.82 4.34
1963 1991 2.949678 CTTCGACCGATGGCGACG 60.950 66.667 0.00 0.00 40.82 5.12
1964 1992 2.158959 CACTTCGACCGATGGCGAC 61.159 63.158 9.53 0.00 40.82 5.19
1965 1993 1.663379 ATCACTTCGACCGATGGCGA 61.663 55.000 9.53 6.31 40.82 5.54
1966 1994 1.209275 GATCACTTCGACCGATGGCG 61.209 60.000 9.53 0.00 37.24 5.69
1967 1995 0.876342 GGATCACTTCGACCGATGGC 60.876 60.000 9.53 0.00 0.00 4.40
1968 1996 0.595053 CGGATCACTTCGACCGATGG 60.595 60.000 3.98 1.94 46.94 3.51
1972 2000 1.064296 CCTCGGATCACTTCGACCG 59.936 63.158 3.66 3.66 45.61 4.79
1973 2001 0.179134 CACCTCGGATCACTTCGACC 60.179 60.000 0.00 0.00 0.00 4.79
2019 2048 7.066163 TGGTTATGCACAGTTGATAGATTTCAG 59.934 37.037 0.00 0.00 0.00 3.02
2029 2058 5.590530 AAAACTTGGTTATGCACAGTTGA 57.409 34.783 0.00 0.00 0.00 3.18
2052 2081 7.041721 CAGTAACTACAATTGCTACATCCTGA 58.958 38.462 5.05 0.00 0.00 3.86
2053 2082 7.041721 TCAGTAACTACAATTGCTACATCCTG 58.958 38.462 5.05 4.50 0.00 3.86
2054 2083 7.182817 TCAGTAACTACAATTGCTACATCCT 57.817 36.000 5.05 0.00 0.00 3.24
2055 2084 7.041780 CCATCAGTAACTACAATTGCTACATCC 60.042 40.741 5.05 0.00 0.00 3.51
2056 2085 7.041780 CCCATCAGTAACTACAATTGCTACATC 60.042 40.741 5.05 0.00 0.00 3.06
2127 2157 5.095490 GCCATGCTAAGTTACATTGTTCAC 58.905 41.667 0.00 0.00 0.00 3.18
2129 2159 5.309323 TGCCATGCTAAGTTACATTGTTC 57.691 39.130 0.00 0.00 0.00 3.18
2207 2237 5.887598 CCCATTTGACAGTGAATCCAATAGA 59.112 40.000 0.00 0.00 0.00 1.98
2215 2245 3.074390 TCTCCACCCATTTGACAGTGAAT 59.926 43.478 0.00 0.00 31.79 2.57
2272 2302 6.670233 AGATGTTACTATAACTGTAGCGCTC 58.330 40.000 16.34 6.54 0.00 5.03
2273 2303 6.636562 AGATGTTACTATAACTGTAGCGCT 57.363 37.500 17.26 17.26 0.00 5.92
2274 2304 8.792831 TTTAGATGTTACTATAACTGTAGCGC 57.207 34.615 0.00 0.00 0.00 5.92
2328 2378 8.655935 AAAGGAATGAGGAAGAATATGTTGTT 57.344 30.769 0.00 0.00 0.00 2.83
2339 2389 5.831702 CTTCCATGAAAGGAATGAGGAAG 57.168 43.478 0.00 0.00 46.05 3.46
2340 2390 5.222109 TGACTTCCATGAAAGGAATGAGGAA 60.222 40.000 0.00 0.00 46.05 3.36
2341 2391 4.289410 TGACTTCCATGAAAGGAATGAGGA 59.711 41.667 0.00 0.00 46.05 3.71
2342 2392 4.592942 TGACTTCCATGAAAGGAATGAGG 58.407 43.478 0.00 0.00 46.05 3.86
2343 2393 5.709164 ACTTGACTTCCATGAAAGGAATGAG 59.291 40.000 0.00 0.00 46.05 2.90
2344 2394 5.634118 ACTTGACTTCCATGAAAGGAATGA 58.366 37.500 0.00 0.00 46.05 2.57
2345 2395 5.972107 ACTTGACTTCCATGAAAGGAATG 57.028 39.130 0.00 0.00 46.05 2.67
2763 2831 4.492160 GCGATCCTCACCGCGACA 62.492 66.667 8.23 0.00 42.02 4.35
2782 2850 4.392921 AGACCTTGTTATCCATCGACTG 57.607 45.455 0.00 0.00 0.00 3.51
2783 2851 6.540438 TTTAGACCTTGTTATCCATCGACT 57.460 37.500 0.00 0.00 0.00 4.18
2941 3015 4.974645 ATGTGTTCTCTTACACTCCCAA 57.025 40.909 8.20 0.00 46.67 4.12
2944 3018 4.083271 GGCAAATGTGTTCTCTTACACTCC 60.083 45.833 8.20 0.00 46.67 3.85
2945 3019 4.083271 GGGCAAATGTGTTCTCTTACACTC 60.083 45.833 8.20 0.00 46.67 3.51
3018 3092 9.401058 CTACCTGATTCTTATTCTTTTGGATGT 57.599 33.333 0.00 0.00 0.00 3.06
3059 3133 8.086522 TCTTACCAACAGTGTGTATTCTAGAAC 58.913 37.037 7.48 0.00 0.00 3.01
3085 3159 6.644347 TCTGCCGAAATTTAGATCTTCTCTT 58.356 36.000 0.00 0.00 35.28 2.85
3103 3177 1.649664 CTTCTGATCACCTTCTGCCG 58.350 55.000 0.00 0.00 0.00 5.69
3160 3248 7.595875 TGTTCTGAATTGTAAATTGCATGTGAG 59.404 33.333 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.