>input_sequence_57779
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------------------------------------------------CGAG---CCACCGGCGACGACGGCGAG-----
-GGCAATGGAGGTCGCCTCCCCCTCCTCCTCCTCCTCCTCCTCCGCGCAGCCCCCGCCCAAGCCCCGCCTCCGCCTCAAC
CCGGCCGCGCTCCTCCTCCGCCCCGCCCCGCCCCCGACCCCCGCGGCGCCATCGGCTCCTCCGCCCGTGGACCCCGCCGC
CGCGGCCGCGCCTCCCCCGCGGCCGGGGGTCGCCGCCCACCCGCTCGTCGCCTTCCTCTCCTCCCTCGTCCCCCTCCG--
-CGGCGAGCGGCCGGGCGCGGCCCCGGCCCCGGGCCCCGCCGTGGCGGCGGCGGCGCGGAGGGCGGCGGAGAGGGACGCC
CTGGCGGAGCTGCAGCTGGCGGGCTGCGCGGTGCCGCTGTTCCGGCCGTACGTGGCGCGGCTGCCCTGGCACGGCGGCAC
GCGGGCGTGGCTCTCCAAGCTCTTCCCGCGCTACGGCCACTACTGCGGGCCCAACTGGTCCAGCGGCAAGGAGGCCGGCT
CCGTGCTCTGGGACCGCCGCCCCGCCGACCACCTCGACTTCTGCTGCTACTGCCACGACATGGCCTACGACACCCACGAC
CAGGCGCAGCTCCTCCGCGCCGACCTCGCCTTCCTCAGCTGCCTCGAGGGCAGCCGCAAGACGCCCGCGCTCGACGGCGT
CGCCGCCGCCGCCATCTACCGCTCCATGTGCATCTTCGGTCTGATTCAATCGCCGCCGCTCAATTC--ATTCATTCCT-G
TGCACATTGCTT---GTACAAATGGAAGATTGACAATTTGACATTTCATTTCTCTGATGATGCGTGTGCAGGGCTCAAGA
CCATACTGATACCGTACAGGACGAACCTGGTGCGGCTGCAAACCGGGCCGAATTATGCCGGCGCATTCGCCGATTTCATG
AAGAGGATGGCCTCGTCTTCCGGCAGGGCGACAACGGGCGGCGAGAAGCATAGATT-GTGAGGGCGACGACGTCGCCATC
GG-TCGAAGTGATCCGAGGTGATTGATGGTGCTGAATTGCTCGGTGACTGAAATCTATCAACTGTGCATAACCAAGTTTT
TCAGGATGTAGCAATTGTAGTTACTGATGGGGAACTTGGTACTCCCAATGTGTATAT-AGGTTAGCATACGACCATGTGA
ACAATGTAACTTAGCATGGCAAGGAATTGCCAAATTGTTACACTGCTGATTAAAACAGGTTTGATCCT------------
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>chr2B_1_TraesCS2B01G154600
CTAAGAGGATTGGAGGGGATTTGGGGGGATTTGACTTGTAGATGATTCAATCCACCTCAATCCCTGTCAAAACCCCTCCA
CAACCCTGTCAACCGAACATGGCCTTAGTGGACACATCCACTACCCTTGAAAACCATGATATGAAACTATGTTCCTTGTA
CAAACCACCCCGGAGTCGGCACACCGTGCAAACGTTACAGGACATGAATGGATGCACGATTCATTTGGTAAGGTGAAACG
GCAAACCGTTGAGTAAGACCGTGAAACTATTAACGGAATCTGTCTACGTAGTTGCAACTTTCCAGACTGGGCCCGTCGTA
CCCCGTCTCCGCGAGCGTGTTGTACATGATCTGACGGCCATGCTGCACTTGCTTTCCCCCGCGCCGACGCCGCAACCATC
CCCTCGTGCGTCGTGCACACGGTCTCACGAAGCCTCGCCGCCGCTCCAGAGGAGAGTCCACGGAGGCGAGACGCGTCACG
GCGCCACGCGTCGGCACCGCGCGCTCACGTGCCGCCGCGAGTCCGGACACCGCACGACGGCATCCGCCTCCAGATCCTCC
GTTTTATCCCGCCCCCGAAACCGGGCAGACCACCCGACCCGCCCAATCCCCCA---CCTCAAAATAACCCCCCAATCCCC
CCGAAACCGGGCCCCAC-----CCCCGCCCCGCCCCGCCCCGTAACTTAACAANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNACGCCACCACCGTCCCCGCCCCAACCGACCTAATACCGAG---CCACCGGCGACGACGGCGAG-----
-GGCAATGGAGGTCGCCTCCCCCTCCTCCTCCTCCTCCTCCTCCGCGCAGCCCCCGCCCAAGCCCCGCCTCCGCCTCAAC
CCGGCCGCGCTCCTCCTCCGCCCCGCCCCGCCCCCGACCCCCGCGGCGCCATCGGCTCCTCCGCCCGTGGACCCCGCCGC
CGCGGCCGCGCCTCCCCCGCGGCCGGGGGTCGCCGCCCACCCGCTCGTCGCCTTCCTCTCCTCCCTCGTCCCCCTCCG--
-CGGCGAGCGGCCGGGCGCGGCCCCGGCCCCGGGCCCCGCCGTGGCGGCGGCGGCGCGGAGGGCGGCGGAGAGGGACGCC
CTGGCGGAGCTGCAGCTGGCGGGCTGCGCGGTGCCGCTGTTCCGGCCGTACGTGGCGCGGCTGCCCTGGCACGGCGGCAC
GCGGGCGTGGCTCTCCAAGCTCTTCCCGCGCTACGGCCACTACTGCGGGCCCAACTGGTCCAGCGGCAAGGAGGCCGGCT
CCGTGCTCTGGGACCGCCGCCCCGCCGACCACCTCGACTTCTGCTGCTACTGCCACGACATGGCCTACGACACCCACGAC
CAGGCGCAGCTCCTCCGCGCCGACCTCGCCTTCCTCAGCTGCCTCGAGGGCAGCCGCAAGACGCCCGCGCTCGACGGCGT
CGCCGCCGCCGCCATCTACCGCTCCATGTGCATCTTCGGTCTGATTCAATCGCCGCCGCTCAATTC--ATTCATTCCT-G
TGCACATTGCTT---GTACAAATGGAAGATTGACAATTTGACATTTCATTTCTCTGATGATGCGTGTGCAGGGCTCAAGA
CCATACTGATACCGTACAGGACGAACCTGGTGCGGCTGCAAACCGGGCCGAATTATGCCGGCGCATTCGCCGATTTCATG
AAGAGGATGGCCTCGTCTTCCGGCAGGGCGACAACGGGCGGCGAGAAGCATAGATT-GTGAGGGCGACGACGTCGCCATC
GG-TCGAAGTGATCCGAGGTGATTGATGGTGCTGAATTGCTCGGTGACTGAAATCTATCAACTGTGCATAACCAAGTTTT
TCAGGATGTAGCAATTGTAGTTACTGATGGGGAACTTGGTACTCCCAATGTGTATAT-AGGTTAGCATACGACCATGTGA
ACAATGTAACTTAGCATGGCAAGGAATTGCCAAATTGTTACACTGCTGATTAAAACAGGTTTGATCCTGCACAAGCTCTA
TTGGATTCACTGTCAAATGGGTGGAGAAAAGAAAAATCCTAAGAACAACTGATTTTGTTCTGAGCGCTACAGTTATAGTA
ACATCTAAAATATGATATCTGAAT--------------------CCATTCATCAATCAACAACATATTCTTCCTCATTCC
TTTCATGGAAGTCAAGTTTTGACTTCATTTCATCTCTAACAGCCTGTATGACAACCAAGGTGTATATATAGGAGGCCACG
TTAACAATCTC--CTCTGTATTTCATTTCACTGATCA---GAGTATTAATCCCGATGTGCCTCAGAA-CCGGCCACATTT
AGAAGGGACTGTTGATCTACAGGACTATACAAGAACGCACTTGGAGCTATCAAGTGCAGAAATAATGGCTATCTATAGCT
ACACATACACCCTACTGGGAGTATGA------------TCCATGACTAGATGGAGGCTCTAACTTGTCCTCACGTAAGCC
TGTGGGAACATCCTTGGGAAGTAAGCGCGCTTCGCCTTGACAACCAGCCAATACGCAGAGAAGCAAGGGACATGAGCGAC
GGCCATGGCGAGGTACCTGTACCGGATTATTGTCGCGGTGAGGATCGCACAGTCGATGGATA--ACAAGGTCTAAAAGTG
AGGTGATAG-AAGCACATACCATAGCGGAGCCCCGGGCGATGCAAGGTCGAGAAACGGGTAAGGCCACCTGAAGA---TG
TTAACAGAATTACATCAACAAATGATAAAACGTAGGAGTAGAACTAGATGAAACTTGGGAGTGTAAGAGAACACATTTGC
CCTAATTTTAAAAGCATACATACTGAAGTAACTGAGCTAATGTACATATCAACATCCAAAAGAATAAGAATCAGGTAGAT
AGCGCTACATGTGTTCTAGAATACACACTGTTGGTAAGAAGAGAAGATCTAAATTTCGGCAGAAGGTGATCAGAAGGTGG
CTAA--------------CACATGTCCAGATGTTTTGGATAAACTGCCTCACATGCAA---------------TTTACAA
TTCAGAACAGTCAGGCACAGC
>chr2A_374
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-----------------------------------------------------TTCCCGCGCGCCGACGCCGCAACATCC
ACCATCCCC-TCGTGCACAAGGTCTCACGAAGCCTCGCCGCCGCTCCAGAGTCTT---CACAGAGGCGAGA---------
----CACGCGTCGGCACCGCGC-------------------------------ACGACGACATCCGCCTCCAGATCCTCC
GTTTTATCCCGCCCCCGAAACCGGGCAGACCACCCGACCCGCCCAATCCCCCACCACCTCAAAATAACCCCCCAATCCCC
CCGAAACCGGGCCCCACCCCCGCCCCGCCCCGTCCCGTCCCGTAACTTAACAAACCCGCANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------CCGCCCAAGCCCCGCCTCCGCCTCAAC
CCGGCCGCGCTCCTCCTCCGCCCCGTCCCGCCCCCGACCCCCGCGCCCCCATCGGCTCCTCCGCCCGCGGGTCCCACCTC
CACCGCCGCGCCTCCCCCGCGGCCCGGGACCGCCGCCCACCCGCTCGTCGCCTTCCTCTCCTCCCTCGTCCCGCGCCG--
-CGGCGGGGAGCGA---------------CCGGGGCCCGCCGTGGCGGCGGCGGCGCGGAGGGCGGCGGAGAGGGACGCC
CTGGCGGAGCTGCAGATGGCGGGGTGCGCGGTGCCGCTGTTCCGGCCGTACGTGGCGCGGCTGCCCTGGCACGGCGGCAC
GCGGGCCTGGCTCTCCAAGCTCTTCCCGCGCTACGGCCACTACTGCGGGCCCAACTGGTCCAGCGGCAAGGAGGCCGGCT
CCGTGCTCTGGGACCGCCGCCCCGCCGACCACCTCGACTTCTGCTGCTACTGCCACGACATGGCCTACGACACCCACGAC
CAGGCGCAGCTCCTCCGCGCCGACCTCGCCTTCCTCAGCTGCCTCGAGGGCAGCCGCAAGACGCCCGCGCTCGACGGCGT
CGCCGCCGCCGCCATCTACCGCTCCATGTGCATCTTCGGTCTGATTCATCTTCAACTCCTCTTGCCCAATTCATTCTT-G
TGCACACTGCCT---ATGCAAATGGAAGATTGACATTTCTTTC------TTCTCTGATGATGCGCGTGCAGGGCTCAAGA
CCATACTGATACCATACAGGACCAACTTGGTGCGGCTGCAAACCGGGCCGAATTACGCCGACGCATTCGCCGATTTCATG
AAGAGGATGGCCTCGTCTTCCGGCAGGGCGATGACGGGCGGCGAGAAGCAAAGATT-TTGAGGGGCAACTGTGTTGCCGT
CGATCGAAGTGATCCGAGGTGATTGATGGTGTTGAATTGCTCGCTGATTGAAA---------TGTGCATAACCAAGTTTT
CACA-ATGTAGCAATTGTAGTTACCGATGGGGAACTTGGTACTCCCAATGTGTATAT-AGGTTAGCATACGACCATATCA
ACAATGTAACTTAGCACGGCAAGGAATTGCCAAATTGTTACAACGCTGATTAAACCAGGTTTGATCCTGCACAAGCCCTA
TTGGGTTCACTGTCAAATGGGTGGAGAAGAGAAAAAGACCC--AACTACTGATTTTGTTCTTGCAC--------------
------AAGATATGATATCTGAATCCTGGGCAGCAACTTCTAGGCCATTCATCAATCCACAACATATCA------ATTCC
TTTCATGGAAGTTAAGTTTTGACTTCATTTCATCTCTAACAGCCTGTATGACAAACAAGGTGTATATATAGGAGGCCACG
TTAACAATCTC--CTCTGTATTTCATTTCACTGATCATCAGAGTATTAATCCCGACGTGCCTCAGAA-CCGGCCATATTT
ACAAGGGATTGTTAATCTACAGGACTATACAAGAACGCACTTGGAGCTATCAAGTGCAGAAATAATGGCTATCTATAGCT
ACACATACACCCTATTGGGAGTATGA------------TCCATGACTAGATGGAGGCTCTAACTTGTCCTCACGTAAGCC
TGTGGGAACATCCTTGGGAAGTAAGCGCGCTTCGCTTTGACAACCAGCCAATACGCAGAGAAGCAAGGGACATGAGCGAC
GGCCATGGCGAGGTACCTGTACCGGATTATCGTTGCGGTGAGGATCGCATGGTCGATGGATA--ACAAGGTCTAAAAGTG
AGGTGATAG-AAGTACATACCATAGCGGAGCCCCGGGCGATGCAAGGTCGAGAAACGGGTAAGGCCACCTGGAGAAGATG
GTAACAGAATTACATATACAAATGATAAAACGTAGGAGTAGAACTAGATGAAACCTGA-AGTGTAAGAGAACACATTTGC
CCTAATTTTAAAAGCATACATACTGAAGTAACTGAGCTAATGTACATAGCAGCATCCAAAAGAATAAGAATCAGGT----
-------GATGTATTCTAGAATACACACTGTTGGTAAGTAGAGAAGATCTATATTTGGTCAGAAGGTGATCAGAAGGTGG
CTAATTATATATGCCCAACACATGTCCAGATGTTTTGGATAAACTGCGTCACATGCAAATGGGCAGAGCCCATTTTACAA
TTCAGAACAGTCAGGCACAGC
>chr2D_965
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------------ACGCCACCACCGTCCCCGCCCCAACCGACCTAATACCGAGCAGCCACCGGCGACGACGGCGCCCGCCG
CGGCAATGGAGGTCGCCTCCTCCCCCTCCTCCTCCTCCTCCTCCGCGCAGCCCCCGCCCAAGCCCCGCCTCCGCATCAAC
CCGGCCGCGCTCCTCCTCCGCCCCGTCCCGCCCCCGACCCCCGCGGCGCCATCGGCTCCTCCGCCCGCGGACCCGG----
-----------------------------CCGCCGCCCACCCGCTCGTCGCCTTCCTCTCCTCCCTCGTCCCGCGCCGCG
CCGGGGAGCGGCCGGGCGCGGCCCCGG------GCCCCGCCGTGGCGTCGGCAGCGCGGAGGGCGGCGGAGAGGGACGCC
CTGGCGGAGCTGCAGATGGCGGGGTGCGCGGTGCCGCTGTTCCGGCCCTACGTGGCGCGGCTGCCCTGGCACGGCGGCAC
GCGGGCCTGGCTCTCCAAGCTCTTCCCGCGCTACGGCCACTACTGCGGGCCCAACTGGTCCAGCGGCAAGGAGGCCGGCT
CCGTGCTCTGGGACCGCCGCCCCGCCGACCACCTCGACTTCTGCTGCTACTGCCACGACATGGCCTACGACACCCATGAC
CAGGCGCAGCTCCTCCGCGCCGACCTCGCCTTCCTCAGCTGCCTCGAGGGCAGCCGCAAGACGCCCGCGCTCGACGGCGT
CGCCGCCGCCGCCATCTACCGCTCCATGTGCATCTTCGGTCTGATTCGCCCGCCGCCGCTCAATTC--ATTCATTCTTCG
TGCACATTGCTTATAGTACAAATGGAAGATTGACATTTCTTTC------TTCTCTGATGATGCG--TGCAGGGCTCAAGA
CCATACTGATACCGTACAGGACCAACCTGGTGAGGCTGCAAACCGGGCCGAATTACGCCGACGCATTCGCCGATTTCATG
AAGAGGATGGCCTCGTCTTCCGGCAGGGCGACGACGGGCGGCGAGAAGCAAAGATTTTTGAGGGGCAAACGTGTTGCCGA
CGATCGAAGTGATCCCAGGTGATTGATGGTGCTGAATTGCTCGGTGATTGAAATCTAGCAACTGTGCATAACCAAGTTTT
CACA-A-----------TAGTTACTGATGAGGAACTTGGTACTCCCAATGTGTATATTAGCTTAGCATACGACCATATCA
ACAATGTAACTTAGCACGGCAAGGAATTGCCAGATTGTTACACTGCTGATTAAAACAGGTTTGATCCTGCACAAGCCCTA
TTGGGTTCAGTGTCAAATGGGT--------GAAAAAATCCC--AACAACTGATTTTGTTCTTGCAC--------------
------AAGATATGATATCTGAATCCTGGGCAGCATCTTCTAGGCCATTCATCAATCCACAACATATTA------ATTCC
TTTCATGGAAGTTAAGTTTTGACTTCATTTCATCTCTAACAGCCTGTATGACAACCAAGGTGTATATATAGGAGGCCGCG
TTAACAATCTCCTCTCTGTATTTCATTTCACTGATCAA---AGTATTAATCCCGATGTGCCTCAGAATCCGGCCACATTT
AGAAGGGACTGTTGATCTACAGGACTATACAAGAACGCACTTGGAGCTATCAAGTGCAGAAATAATGGCTATCTATAGCT
ACACATACACGCTACACATACACCCTACTAGGAGTATGTCCATGACTAGATAGAGGCTCTAACTTGTCCTCACGTAAGCC
TGTGGGAACATCCTTGGGAAGTAAGTGCGCTTCGCCTTGACAACCAGCCAATACGCAGAGAAGCACGGGACGTGAGCGAC
GGCCATGGCGAGGTACCTGTGCCAGATTAGAGTTGCTGTGAGGATGGCGTGGTCGATGGATATAACAAGGTCTGAACC-G
AGGTGATAGAAAGCACATACCATAGCAGAGCCCCGGGCGATGCAAGGTCGAGAAACGGGTAAGGCCACCTGAAGAAGATG
GTAACATAATTACATCAACAAATGACAAAACGTAGCAGTAGAACTAGATGAAACCTGA-AGTGTAAGAGAACACATTTGC
CGTAATTTTAAAAGCATACATACTGAAGTAACTGAGCTAATGTACATATCAGCATCCAAAAGAATAAGAATCAGGTAGAT
AGCGCTAGATGTATTCTAGAATACACAATGTTGGTAAGTAGAGAAGATCTAAATTTGGGCAGAAGGTGATCAGAAGGTGG
CTAATTATATATGTCCAACACATGTCCAGATGTTTTGGATAAACTGCGTCACATGCAAATGGGCAGAGACCATTTTACAA
TTCAGAACAGTCAGGCACAGC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-----------------SSS-
S--SSSSS-S---------S-------------------------------SSSSSSS---S---------SSSSSSSSS
SSSS------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S--------------------
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--------------------------------S----S---------------SSSSSSS--------------------
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-------------------------------------------------------------------------SS-----
--------------------S--S--------------------------------------------------------
-------------------------S-----------------------------------------S----------S-
-S-S--------------------S---SS------------------------------------------S-S-----
---------------------------SS---------------------------------------------------
---------------S-------S--------------------------------------------------------
------S-------------------------------------------------------------------------
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------------------------------------------------SS--------------------------S---
-----------------------------------S--SSSSSSSSSSS---------------S---------------
----------------------S--------------------------------S----S-------------------
--------------------------------S-----------------S------S------SS-SSSSSSSSS-SSS
S----------------------------------------------S---------S----------------------
SSSSS-----------------------------------------------------------------------S-S-
----------------S-----------------------------------------------------------S---
----S-----------------------S-------SS-SSSS------------------SSSSSSSSSSSSSSSSSSS
SSSSSS--S------------------------------------------------S----------SSSSSSS-----
------------S-------------------------------------------------------------------
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------------------------------S--S---------------SS-----------------------------
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S-----------------------------------------------------S--SS---------------------
---------------------------------------------------S----------------------------
-------S----S-------------------------S-----------------S-----------------------
-----------------------------------------------S--------------------------------
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>forward_111
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-----------ACCGAACATGGCCTTAGTGG-------------------------------------------------
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>reverse_2001
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GGTCGAAGTGATCCGAGGTG------------------------------------------------------------
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>forward_201
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---------------------CACCGTGCAAACGTTACAGG---------------------------------------
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>reverse_2157
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----------------------------------------------------------------------------GTGA
ACAATGTAACTTAGCATGGC------------------------------------------------------------
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>forward_2048
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----------------------------GTGCTGAATTGCTCGGTGAC--------------------------------
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>reverse_3177
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--------------------------------------------------------CGGCAGAAGGTGATCAGAAG----
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