Multiple sequence alignment - TraesCS2B01G135500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G135500 chr2B 100.000 3935 0 0 1 3935 102030613 102026679 0.000000e+00 7267.0
1 TraesCS2B01G135500 chr2B 93.182 176 11 1 3760 3935 741734542 741734368 1.400000e-64 257.0
2 TraesCS2B01G135500 chr2D 92.045 2816 129 35 459 3243 68790005 68792756 0.000000e+00 3871.0
3 TraesCS2B01G135500 chr2D 90.278 504 41 6 3262 3759 68792740 68793241 0.000000e+00 652.0
4 TraesCS2B01G135500 chr2D 94.400 250 14 0 1455 1704 69131858 69132107 6.170000e-103 385.0
5 TraesCS2B01G135500 chr2A 94.231 1508 69 9 1449 2950 66313016 66311521 0.000000e+00 2287.0
6 TraesCS2B01G135500 chr2A 77.702 1471 158 67 1 1411 66314372 66313012 0.000000e+00 743.0
7 TraesCS2B01G135500 chr2A 90.855 503 39 5 3262 3759 66305698 66305198 0.000000e+00 667.0
8 TraesCS2B01G135500 chr2A 90.584 308 23 3 2937 3243 66305984 66305682 1.700000e-108 403.0
9 TraesCS2B01G135500 chr4D 82.044 362 55 5 3339 3694 466319972 466319615 2.300000e-77 300.0
10 TraesCS2B01G135500 chr7B 95.455 176 8 0 3760 3935 647372909 647373084 8.320000e-72 281.0
11 TraesCS2B01G135500 chr4B 94.857 175 9 0 3760 3934 597334647 597334821 1.390000e-69 274.0
12 TraesCS2B01G135500 chr5B 93.333 180 12 0 3756 3935 201457814 201457993 2.330000e-67 267.0
13 TraesCS2B01G135500 chrUn 93.750 176 11 0 3760 3935 17290478 17290653 8.380000e-67 265.0
14 TraesCS2B01G135500 chrUn 93.750 176 10 1 3760 3935 480623663 480623489 3.020000e-66 263.0
15 TraesCS2B01G135500 chr3B 92.896 183 12 1 3753 3935 789801016 789801197 8.380000e-67 265.0
16 TraesCS2B01G135500 chr3B 93.750 176 10 1 3760 3935 73073586 73073412 3.020000e-66 263.0
17 TraesCS2B01G135500 chr3B 93.750 176 10 1 3760 3935 73110500 73110326 3.020000e-66 263.0
18 TraesCS2B01G135500 chr1D 74.615 520 82 35 64 559 24775020 24775513 2.420000e-42 183.0
19 TraesCS2B01G135500 chr1D 86.154 65 9 0 133 197 478353936 478353872 1.960000e-08 71.3
20 TraesCS2B01G135500 chr3D 79.832 238 33 9 64 295 526189528 526189300 4.070000e-35 159.0
21 TraesCS2B01G135500 chr1A 79.121 182 30 6 133 314 25685683 25685856 6.910000e-23 119.0
22 TraesCS2B01G135500 chr1A 81.609 87 12 3 87 170 574637175 574637090 7.060000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G135500 chr2B 102026679 102030613 3934 True 7267.0 7267 100.0000 1 3935 1 chr2B.!!$R1 3934
1 TraesCS2B01G135500 chr2D 68790005 68793241 3236 False 2261.5 3871 91.1615 459 3759 2 chr2D.!!$F2 3300
2 TraesCS2B01G135500 chr2A 66311521 66314372 2851 True 1515.0 2287 85.9665 1 2950 2 chr2A.!!$R2 2949
3 TraesCS2B01G135500 chr2A 66305198 66305984 786 True 535.0 667 90.7195 2937 3759 2 chr2A.!!$R1 822

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
397 412 0.036388 CGCTTCAGCCCAGTAAGGAA 60.036 55.0 0.00 0.0 37.91 3.36 F
428 443 0.106918 AAACCAGTGGCCAGTCGAAA 60.107 50.0 11.12 0.0 0.00 3.46 F
2153 2236 0.248907 CAGTACTACACCGGCGATGG 60.249 60.0 9.30 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2124 2207 0.412244 TGTAGTACTGCAGGAGGGGT 59.588 55.0 19.93 0.0 0.00 4.95 R
2155 2238 0.578211 TTCTTCGTTTTGTCGCCGTC 59.422 50.0 0.00 0.0 0.00 4.79 R
3910 3999 0.039035 GGTTGCCATGGGACCACTTA 59.961 55.0 15.13 0.0 33.61 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 9.707957 ATTTGTGTTCATATTACCCATTAGGAA 57.292 29.630 0.00 0.00 39.89 3.36
103 104 9.627123 TGTTCATATTACCCATTAGGAAGAAAG 57.373 33.333 0.00 0.00 39.89 2.62
104 105 9.847224 GTTCATATTACCCATTAGGAAGAAAGA 57.153 33.333 0.00 0.00 39.89 2.52
109 110 8.950007 ATTACCCATTAGGAAGAAAGAAAACA 57.050 30.769 0.00 0.00 39.89 2.83
143 149 8.819643 TTTTAAACAACTTACAACTTTGCACT 57.180 26.923 0.00 0.00 0.00 4.40
227 239 9.040939 GTACACACATGTTATATATCACTTGCA 57.959 33.333 11.08 0.00 40.48 4.08
233 245 9.777297 ACATGTTATATATCACTTGCATGTACA 57.223 29.630 4.73 0.00 42.27 2.90
249 261 5.619086 GCATGTACACATTTTACACTCACCC 60.619 44.000 0.00 0.00 33.61 4.61
275 287 8.834465 CAACATCACAAAAATACCCATGAAAAA 58.166 29.630 0.00 0.00 0.00 1.94
276 288 8.376889 ACATCACAAAAATACCCATGAAAAAC 57.623 30.769 0.00 0.00 0.00 2.43
279 291 6.697892 TCACAAAAATACCCATGAAAAACGAC 59.302 34.615 0.00 0.00 0.00 4.34
282 294 8.414778 ACAAAAATACCCATGAAAAACGACTAA 58.585 29.630 0.00 0.00 0.00 2.24
284 296 7.989416 AAATACCCATGAAAAACGACTAAGA 57.011 32.000 0.00 0.00 0.00 2.10
291 303 7.918562 CCCATGAAAAACGACTAAGAAAAAGAA 59.081 33.333 0.00 0.00 0.00 2.52
292 304 9.296400 CCATGAAAAACGACTAAGAAAAAGAAA 57.704 29.630 0.00 0.00 0.00 2.52
297 309 9.701098 AAAAACGACTAAGAAAAAGAAAAAGGT 57.299 25.926 0.00 0.00 0.00 3.50
343 355 4.910746 AGAACAAGATGAAACATCGTCG 57.089 40.909 0.00 0.00 0.00 5.12
359 374 4.126208 TCGTCGGCCTATAAACAATCAA 57.874 40.909 0.00 0.00 0.00 2.57
376 391 3.536956 TCAACAGAAGGAAACACGAGT 57.463 42.857 0.00 0.00 0.00 4.18
397 412 0.036388 CGCTTCAGCCCAGTAAGGAA 60.036 55.000 0.00 0.00 37.91 3.36
408 423 3.388350 CCCAGTAAGGAATCTACTGACCC 59.612 52.174 10.20 0.00 42.65 4.46
416 431 3.009143 GGAATCTACTGACCCAAACCAGT 59.991 47.826 0.00 0.00 44.81 4.00
417 432 3.703001 ATCTACTGACCCAAACCAGTG 57.297 47.619 0.00 0.00 42.88 3.66
418 433 1.697432 TCTACTGACCCAAACCAGTGG 59.303 52.381 7.91 7.91 42.88 4.00
419 434 0.109723 TACTGACCCAAACCAGTGGC 59.890 55.000 9.78 0.00 42.88 5.01
420 435 1.903404 CTGACCCAAACCAGTGGCC 60.903 63.158 9.78 0.00 37.34 5.36
421 436 2.197324 GACCCAAACCAGTGGCCA 59.803 61.111 9.78 0.00 37.34 5.36
422 437 1.903404 GACCCAAACCAGTGGCCAG 60.903 63.158 5.11 0.00 37.34 4.85
423 438 2.198426 CCCAAACCAGTGGCCAGT 59.802 61.111 5.11 6.41 37.34 4.00
424 439 1.903404 CCCAAACCAGTGGCCAGTC 60.903 63.158 11.12 0.00 37.34 3.51
425 440 2.260869 CCAAACCAGTGGCCAGTCG 61.261 63.158 11.12 6.93 0.00 4.18
426 441 1.227823 CAAACCAGTGGCCAGTCGA 60.228 57.895 11.12 0.00 0.00 4.20
427 442 0.817634 CAAACCAGTGGCCAGTCGAA 60.818 55.000 11.12 0.00 0.00 3.71
428 443 0.106918 AAACCAGTGGCCAGTCGAAA 60.107 50.000 11.12 0.00 0.00 3.46
429 444 0.818040 AACCAGTGGCCAGTCGAAAC 60.818 55.000 11.12 0.00 0.00 2.78
430 445 1.071471 CCAGTGGCCAGTCGAAACT 59.929 57.895 11.12 0.00 35.60 2.66
431 446 0.535102 CCAGTGGCCAGTCGAAACTT 60.535 55.000 11.12 0.00 31.71 2.66
432 447 1.308998 CAGTGGCCAGTCGAAACTTT 58.691 50.000 11.12 0.00 31.71 2.66
433 448 1.676006 CAGTGGCCAGTCGAAACTTTT 59.324 47.619 11.12 0.00 31.71 2.27
434 449 1.676006 AGTGGCCAGTCGAAACTTTTG 59.324 47.619 5.11 0.00 31.71 2.44
439 454 0.313987 CAGTCGAAACTTTTGGCCCC 59.686 55.000 0.00 0.00 31.71 5.80
441 456 0.747852 GTCGAAACTTTTGGCCCCAA 59.252 50.000 0.00 0.00 0.00 4.12
457 472 1.267806 CCCAAACATGACAGCAGACAC 59.732 52.381 0.00 0.00 0.00 3.67
500 516 4.267536 TGGATCTCCAAGCAGAAATTCAG 58.732 43.478 0.00 0.00 44.35 3.02
503 519 2.816087 TCTCCAAGCAGAAATTCAGTGC 59.184 45.455 0.00 0.00 37.48 4.40
523 541 6.016555 AGTGCCTCAAAAATACTAACCCAAT 58.983 36.000 0.00 0.00 0.00 3.16
526 544 7.659799 GTGCCTCAAAAATACTAACCCAATTTT 59.340 33.333 0.00 0.00 35.01 1.82
562 584 8.947940 GCGAATTACACATAGCTAAATTGAAAG 58.052 33.333 0.00 0.00 0.00 2.62
580 603 4.212004 TGAAAGAAAGAACATCTCACTGCG 59.788 41.667 0.00 0.00 0.00 5.18
643 677 0.965866 CTGGTCCCTGACGTGCTCTA 60.966 60.000 0.00 0.00 32.65 2.43
742 776 2.505118 GCGTCGACCTCACTCAGC 60.505 66.667 10.58 0.58 0.00 4.26
805 840 2.841988 GCCGAGCCAGGAGAGGAT 60.842 66.667 0.00 0.00 0.00 3.24
806 841 1.531840 GCCGAGCCAGGAGAGGATA 60.532 63.158 0.00 0.00 0.00 2.59
808 843 0.676736 CCGAGCCAGGAGAGGATAAC 59.323 60.000 0.00 0.00 0.00 1.89
809 844 1.403814 CGAGCCAGGAGAGGATAACA 58.596 55.000 0.00 0.00 0.00 2.41
817 858 1.209747 GGAGAGGATAACACCACACCC 59.790 57.143 0.00 0.00 0.00 4.61
851 892 5.390567 CCGTCCTTAATTTGGTTCTTCTTCG 60.391 44.000 0.00 0.00 0.00 3.79
866 907 3.201353 TCTTCGATCAACCAACCAACA 57.799 42.857 0.00 0.00 0.00 3.33
868 909 1.222300 TCGATCAACCAACCAACACG 58.778 50.000 0.00 0.00 0.00 4.49
873 923 1.604755 TCAACCAACCAACACGTATGC 59.395 47.619 0.00 0.00 0.00 3.14
881 931 2.806244 ACCAACACGTATGCTCTTTCAC 59.194 45.455 0.00 0.00 0.00 3.18
924 975 5.178252 CCACGCAATCTCTCTAATTACATGG 59.822 44.000 0.00 0.00 0.00 3.66
938 989 0.541296 ACATGGCTTGGCTGCTTCTT 60.541 50.000 5.31 0.00 0.00 2.52
939 990 1.272092 ACATGGCTTGGCTGCTTCTTA 60.272 47.619 5.31 0.00 0.00 2.10
940 991 1.820519 CATGGCTTGGCTGCTTCTTAA 59.179 47.619 0.00 0.00 0.00 1.85
941 992 2.220653 TGGCTTGGCTGCTTCTTAAT 57.779 45.000 0.00 0.00 0.00 1.40
942 993 2.528564 TGGCTTGGCTGCTTCTTAATT 58.471 42.857 0.00 0.00 0.00 1.40
960 1011 2.675658 TTAGGCTGGGTGAAGCTTTT 57.324 45.000 0.00 0.00 43.06 2.27
997 1048 6.968131 AGAAACTTTTGGCTTTGTTCTTTC 57.032 33.333 0.00 0.00 0.00 2.62
1013 1070 1.948145 CTTTCTCATGAGATGGCCTGC 59.052 52.381 25.64 0.00 37.29 4.85
1016 1073 1.282738 TCTCATGAGATGGCCTGCAAA 59.717 47.619 21.67 0.00 31.41 3.68
1018 1075 0.458669 CATGAGATGGCCTGCAAACC 59.541 55.000 3.32 0.00 0.00 3.27
1053 1110 5.014202 AACACCTTTTGTGGTTAGTTCAGT 58.986 37.500 0.00 0.00 44.50 3.41
1054 1111 6.181908 AACACCTTTTGTGGTTAGTTCAGTA 58.818 36.000 0.00 0.00 44.50 2.74
1121 1190 2.161012 CACATGTCAAGTGATGTCCAGC 59.839 50.000 1.90 0.00 39.30 4.85
1325 1399 2.434884 CATGAACGGCTGGAGCGT 60.435 61.111 0.00 0.00 43.26 5.07
1327 1401 3.665675 ATGAACGGCTGGAGCGTCC 62.666 63.158 0.00 0.00 43.26 4.79
1328 1402 4.070552 GAACGGCTGGAGCGTCCT 62.071 66.667 0.00 0.00 43.26 3.85
1329 1403 3.991536 GAACGGCTGGAGCGTCCTC 62.992 68.421 0.00 0.00 43.26 3.71
1338 1412 1.527380 GAGCGTCCTCCTCCTCGAT 60.527 63.158 0.00 0.00 31.68 3.59
1405 1479 1.079543 CTGGAGGCTGACAAGGACG 60.080 63.158 0.00 0.00 0.00 4.79
1433 1510 1.980951 TACGACGCCGCTACATCGTT 61.981 55.000 5.06 0.00 44.98 3.85
1503 1580 1.329256 ACCTGTTCTACTGCGTCTGT 58.671 50.000 0.00 0.00 0.00 3.41
1722 1799 4.821589 GCCTCCTTCGCGTCAGGG 62.822 72.222 21.84 14.38 31.50 4.45
1822 1902 4.819761 GCGTCATCTGCCTCCGCA 62.820 66.667 0.00 0.00 44.78 5.69
1885 1965 4.421479 ACGCGTGCTTCCTCCTCG 62.421 66.667 12.93 0.00 0.00 4.63
2009 2089 0.874175 TTTATCCACGGCAGATCGCG 60.874 55.000 0.00 0.00 43.84 5.87
2103 2186 3.014623 GGATTTTTACCCGGACCAAGAG 58.985 50.000 0.73 0.00 0.00 2.85
2124 2207 4.697756 CTGCTCCCCGAAACGGCA 62.698 66.667 4.57 0.00 46.86 5.69
2143 2226 0.412244 ACCCCTCCTGCAGTACTACA 59.588 55.000 13.81 0.00 0.00 2.74
2151 2234 1.317431 TGCAGTACTACACCGGCGAT 61.317 55.000 9.30 0.00 32.14 4.58
2153 2236 0.248907 CAGTACTACACCGGCGATGG 60.249 60.000 9.30 0.00 0.00 3.51
2154 2237 1.590792 GTACTACACCGGCGATGGC 60.591 63.158 9.30 0.00 38.90 4.40
2178 2261 2.285950 CGGCGACAAAACGAAGAAGAAA 60.286 45.455 0.00 0.00 35.09 2.52
2183 2266 4.962151 CGACAAAACGAAGAAGAAAAGGAC 59.038 41.667 0.00 0.00 35.09 3.85
2362 2445 4.856607 GGAGCCCGCTTCTCGTCG 62.857 72.222 0.00 0.00 36.19 5.12
2365 2448 4.117661 GCCCGCTTCTCGTCGTCT 62.118 66.667 0.00 0.00 36.19 4.18
2374 2457 2.670592 TCGTCGTCTTCCTCGGCA 60.671 61.111 0.00 0.00 32.96 5.69
2430 2513 4.377708 AGCACGGACGCTGATGCA 62.378 61.111 7.58 0.00 41.85 3.96
2445 2528 1.582610 ATGCACCGCCGACGAAATTT 61.583 50.000 0.00 0.00 43.93 1.82
2583 2666 1.450312 GCTGGGGATGACGGTTCTG 60.450 63.158 0.00 0.00 0.00 3.02
2670 2753 3.775654 GCTCAGGTGGCCGTAGCT 61.776 66.667 0.00 0.00 39.73 3.32
2761 2844 3.297904 GGTACCCGAAGCCCGTAA 58.702 61.111 0.00 0.00 36.31 3.18
2841 2924 2.268920 GCCTTCGTCATGCTCCCA 59.731 61.111 0.00 0.00 0.00 4.37
2923 3006 2.719739 TCTTGTGTACTACTCCCTCCG 58.280 52.381 0.00 0.00 0.00 4.63
3108 3191 2.432444 CCACTAAATGAGCGGGAACAA 58.568 47.619 0.00 0.00 0.00 2.83
3137 3225 9.418045 ACATGCAGTGGTTAATTTTATTGTAAC 57.582 29.630 0.00 0.00 0.00 2.50
3140 3228 6.237097 GCAGTGGTTAATTTTATTGTAACGCG 60.237 38.462 3.53 3.53 0.00 6.01
3187 3275 6.437162 TGAAAAGGAATGAAAATGGACTAGGG 59.563 38.462 0.00 0.00 0.00 3.53
3194 3282 7.725844 GGAATGAAAATGGACTAGGGACATTAT 59.274 37.037 8.58 0.00 34.00 1.28
3243 3331 6.209192 TCAAGCACTACAATGACCAAATGATT 59.791 34.615 0.00 0.00 0.00 2.57
3244 3332 6.594788 AGCACTACAATGACCAAATGATTT 57.405 33.333 0.00 0.00 0.00 2.17
3245 3333 6.624423 AGCACTACAATGACCAAATGATTTC 58.376 36.000 0.00 0.00 0.00 2.17
3246 3334 6.209192 AGCACTACAATGACCAAATGATTTCA 59.791 34.615 0.00 0.00 0.00 2.69
3247 3335 6.529125 GCACTACAATGACCAAATGATTTCAG 59.471 38.462 0.00 0.00 0.00 3.02
3248 3336 7.596494 CACTACAATGACCAAATGATTTCAGT 58.404 34.615 0.00 0.00 0.00 3.41
3249 3337 7.752239 CACTACAATGACCAAATGATTTCAGTC 59.248 37.037 9.53 9.53 0.00 3.51
3250 3338 6.653526 ACAATGACCAAATGATTTCAGTCA 57.346 33.333 17.58 17.58 37.37 3.41
3251 3339 7.053316 ACAATGACCAAATGATTTCAGTCAA 57.947 32.000 18.61 7.71 36.86 3.18
3252 3340 7.499292 ACAATGACCAAATGATTTCAGTCAAA 58.501 30.769 18.61 3.47 36.86 2.69
3253 3341 7.654520 ACAATGACCAAATGATTTCAGTCAAAG 59.345 33.333 18.61 16.23 36.86 2.77
3254 3342 6.957920 TGACCAAATGATTTCAGTCAAAGA 57.042 33.333 14.53 0.00 32.83 2.52
3255 3343 7.345422 TGACCAAATGATTTCAGTCAAAGAA 57.655 32.000 14.53 0.00 32.83 2.52
3256 3344 7.780064 TGACCAAATGATTTCAGTCAAAGAAA 58.220 30.769 14.53 0.00 39.11 2.52
3257 3345 8.256605 TGACCAAATGATTTCAGTCAAAGAAAA 58.743 29.630 14.53 0.00 38.36 2.29
3282 3370 9.947433 AAAAATACAATGACCAAATGATGACAT 57.053 25.926 0.00 0.00 38.50 3.06
3283 3371 8.936070 AAATACAATGACCAAATGATGACATG 57.064 30.769 0.00 0.00 36.79 3.21
3284 3372 7.885009 ATACAATGACCAAATGATGACATGA 57.115 32.000 0.00 0.00 36.79 3.07
3285 3373 5.957798 ACAATGACCAAATGATGACATGAC 58.042 37.500 0.00 0.00 36.79 3.06
3286 3374 5.713389 ACAATGACCAAATGATGACATGACT 59.287 36.000 0.00 0.00 36.79 3.41
3287 3375 6.127814 ACAATGACCAAATGATGACATGACTC 60.128 38.462 0.00 0.00 36.79 3.36
3288 3376 3.934579 TGACCAAATGATGACATGACTCG 59.065 43.478 0.00 0.00 36.79 4.18
3302 3390 3.526385 TGACTCGCCGTATATCGTTAC 57.474 47.619 0.00 0.00 37.94 2.50
3334 3422 9.190858 GCAATAATAGATCCATATAGAGAAGCG 57.809 37.037 0.00 0.00 0.00 4.68
3346 3434 7.920151 CCATATAGAGAAGCGAGAATATTCAGG 59.080 40.741 17.56 9.41 0.00 3.86
3348 3436 7.716799 ATAGAGAAGCGAGAATATTCAGGAT 57.283 36.000 17.56 4.61 0.00 3.24
3380 3468 1.794701 CGAAGGCCATGATGACATACG 59.205 52.381 5.01 0.00 35.09 3.06
3386 3474 2.291465 GCCATGATGACATACGCACAAT 59.709 45.455 0.00 0.00 35.09 2.71
3395 3483 2.416547 ACATACGCACAATCAGAGCAAC 59.583 45.455 0.00 0.00 32.95 4.17
3400 3488 2.468777 CGCACAATCAGAGCAACAAAAC 59.531 45.455 0.00 0.00 32.95 2.43
3402 3490 3.737663 GCACAATCAGAGCAACAAAACCA 60.738 43.478 0.00 0.00 33.66 3.67
3411 3499 4.342092 AGAGCAACAAAACCATTTAGCAGT 59.658 37.500 0.00 0.00 0.00 4.40
3439 3527 9.315525 GAAATAGTGGTCTACTTTATTGAGGAC 57.684 37.037 0.00 0.00 40.89 3.85
3479 3567 6.267471 AGCAAGAAGAATGGGAAATGTTGTTA 59.733 34.615 0.00 0.00 0.00 2.41
3498 3586 6.339194 TGTTAACATCATATCAAACGACCG 57.661 37.500 3.59 0.00 0.00 4.79
3502 3590 2.665649 TCATATCAAACGACCGCACT 57.334 45.000 0.00 0.00 0.00 4.40
3511 3599 4.214545 TCAAACGACCGCACTAAAATGATT 59.785 37.500 0.00 0.00 0.00 2.57
3545 3634 2.191128 ATGAAGTTGTCTCTGGTGGC 57.809 50.000 0.00 0.00 0.00 5.01
3669 3758 4.792068 ACATTGACTTTTCCTTCTCACCA 58.208 39.130 0.00 0.00 0.00 4.17
3686 3775 9.853177 CTTCTCACCAATAGTATTAATCCCTTT 57.147 33.333 0.00 0.00 0.00 3.11
3693 3782 9.627123 CCAATAGTATTAATCCCTTTGACTTCA 57.373 33.333 0.00 0.00 0.00 3.02
3759 3848 3.411415 AATTAGTCGCAGAAAGCATGC 57.589 42.857 10.51 10.51 46.13 4.06
3760 3849 1.807139 TTAGTCGCAGAAAGCATGCA 58.193 45.000 21.98 0.00 46.13 3.96
3761 3850 1.078709 TAGTCGCAGAAAGCATGCAC 58.921 50.000 21.98 10.82 46.13 4.57
3762 3851 0.604780 AGTCGCAGAAAGCATGCACT 60.605 50.000 21.98 13.02 46.13 4.40
3763 3852 1.078709 GTCGCAGAAAGCATGCACTA 58.921 50.000 21.98 0.00 46.13 2.74
3764 3853 1.078709 TCGCAGAAAGCATGCACTAC 58.921 50.000 21.98 9.72 46.13 2.73
3765 3854 1.081892 CGCAGAAAGCATGCACTACT 58.918 50.000 21.98 10.43 46.13 2.57
3766 3855 2.094234 TCGCAGAAAGCATGCACTACTA 60.094 45.455 21.98 0.57 46.13 1.82
3767 3856 2.283617 CGCAGAAAGCATGCACTACTAG 59.716 50.000 21.98 4.39 46.13 2.57
3768 3857 2.611292 GCAGAAAGCATGCACTACTAGG 59.389 50.000 21.98 5.19 43.31 3.02
3769 3858 3.201290 CAGAAAGCATGCACTACTAGGG 58.799 50.000 21.98 0.00 0.00 3.53
3770 3859 3.107601 AGAAAGCATGCACTACTAGGGA 58.892 45.455 21.98 0.00 0.00 4.20
3771 3860 3.519510 AGAAAGCATGCACTACTAGGGAA 59.480 43.478 21.98 0.00 0.00 3.97
3772 3861 4.019321 AGAAAGCATGCACTACTAGGGAAA 60.019 41.667 21.98 0.00 0.00 3.13
3773 3862 4.510167 AAGCATGCACTACTAGGGAAAT 57.490 40.909 21.98 0.00 0.00 2.17
3774 3863 3.813443 AGCATGCACTACTAGGGAAATG 58.187 45.455 21.98 0.00 0.00 2.32
3775 3864 2.291741 GCATGCACTACTAGGGAAATGC 59.708 50.000 14.21 9.47 34.58 3.56
3776 3865 2.710096 TGCACTACTAGGGAAATGCC 57.290 50.000 0.00 0.00 32.02 4.40
3777 3866 2.196595 TGCACTACTAGGGAAATGCCT 58.803 47.619 0.00 0.00 36.66 4.75
3778 3867 3.380393 TGCACTACTAGGGAAATGCCTA 58.620 45.455 0.52 0.52 36.66 3.93
3779 3868 3.973973 TGCACTACTAGGGAAATGCCTAT 59.026 43.478 0.82 0.00 36.66 2.57
3780 3869 5.152193 TGCACTACTAGGGAAATGCCTATA 58.848 41.667 0.82 0.00 36.66 1.31
3781 3870 5.011738 TGCACTACTAGGGAAATGCCTATAC 59.988 44.000 0.82 0.00 36.66 1.47
3782 3871 5.011738 GCACTACTAGGGAAATGCCTATACA 59.988 44.000 0.82 0.00 36.66 2.29
3783 3872 6.456501 CACTACTAGGGAAATGCCTATACAC 58.543 44.000 0.82 0.00 36.66 2.90
3784 3873 6.041637 CACTACTAGGGAAATGCCTATACACA 59.958 42.308 0.82 0.00 36.66 3.72
3785 3874 6.787957 ACTACTAGGGAAATGCCTATACACAT 59.212 38.462 0.82 0.00 36.66 3.21
3786 3875 5.869579 ACTAGGGAAATGCCTATACACATG 58.130 41.667 0.82 0.00 36.66 3.21
3787 3876 5.606749 ACTAGGGAAATGCCTATACACATGA 59.393 40.000 0.00 0.00 36.66 3.07
3788 3877 4.978099 AGGGAAATGCCTATACACATGAG 58.022 43.478 0.00 0.00 36.66 2.90
3789 3878 3.503748 GGGAAATGCCTATACACATGAGC 59.496 47.826 0.00 0.00 36.66 4.26
3790 3879 4.392940 GGAAATGCCTATACACATGAGCT 58.607 43.478 0.00 0.00 0.00 4.09
3791 3880 4.823989 GGAAATGCCTATACACATGAGCTT 59.176 41.667 0.00 0.00 0.00 3.74
3792 3881 5.997746 GGAAATGCCTATACACATGAGCTTA 59.002 40.000 0.00 0.00 0.00 3.09
3793 3882 6.148480 GGAAATGCCTATACACATGAGCTTAG 59.852 42.308 0.00 0.00 0.00 2.18
3794 3883 5.815233 ATGCCTATACACATGAGCTTAGT 57.185 39.130 0.00 0.00 0.00 2.24
3795 3884 6.918067 ATGCCTATACACATGAGCTTAGTA 57.082 37.500 0.00 0.00 0.00 1.82
3796 3885 6.332735 TGCCTATACACATGAGCTTAGTAG 57.667 41.667 0.00 0.00 0.00 2.57
3797 3886 5.833667 TGCCTATACACATGAGCTTAGTAGT 59.166 40.000 0.00 0.00 0.00 2.73
3798 3887 7.002276 TGCCTATACACATGAGCTTAGTAGTA 58.998 38.462 0.00 0.00 0.00 1.82
3799 3888 7.175119 TGCCTATACACATGAGCTTAGTAGTAG 59.825 40.741 0.00 0.00 0.00 2.57
3800 3889 7.531716 CCTATACACATGAGCTTAGTAGTAGC 58.468 42.308 0.00 0.00 38.93 3.58
3801 3890 4.294416 ACACATGAGCTTAGTAGTAGCG 57.706 45.455 0.00 0.00 43.37 4.26
3802 3891 3.046390 CACATGAGCTTAGTAGTAGCGC 58.954 50.000 0.00 0.00 43.37 5.92
3803 3892 2.952978 ACATGAGCTTAGTAGTAGCGCT 59.047 45.455 17.26 17.26 43.37 5.92
3804 3893 3.243234 ACATGAGCTTAGTAGTAGCGCTG 60.243 47.826 22.90 0.54 43.37 5.18
3805 3894 1.676529 TGAGCTTAGTAGTAGCGCTGG 59.323 52.381 22.90 0.89 43.37 4.85
3806 3895 1.677052 GAGCTTAGTAGTAGCGCTGGT 59.323 52.381 22.90 9.61 43.37 4.00
3807 3896 2.099427 GAGCTTAGTAGTAGCGCTGGTT 59.901 50.000 22.90 7.82 43.37 3.67
3808 3897 3.285484 AGCTTAGTAGTAGCGCTGGTTA 58.715 45.455 22.90 6.72 43.37 2.85
3809 3898 3.890147 AGCTTAGTAGTAGCGCTGGTTAT 59.110 43.478 22.90 5.80 43.37 1.89
3810 3899 3.982058 GCTTAGTAGTAGCGCTGGTTATG 59.018 47.826 22.90 8.60 0.00 1.90
3811 3900 4.547532 CTTAGTAGTAGCGCTGGTTATGG 58.452 47.826 22.90 0.00 0.00 2.74
3812 3901 1.687123 AGTAGTAGCGCTGGTTATGGG 59.313 52.381 22.90 0.00 0.00 4.00
3813 3902 1.411612 GTAGTAGCGCTGGTTATGGGT 59.588 52.381 22.90 0.00 0.00 4.51
3814 3903 0.464452 AGTAGCGCTGGTTATGGGTC 59.536 55.000 22.90 0.00 0.00 4.46
3815 3904 0.464452 GTAGCGCTGGTTATGGGTCT 59.536 55.000 22.90 0.00 0.00 3.85
3816 3905 1.684983 GTAGCGCTGGTTATGGGTCTA 59.315 52.381 22.90 0.00 0.00 2.59
3817 3906 0.753262 AGCGCTGGTTATGGGTCTAG 59.247 55.000 10.39 0.00 0.00 2.43
3818 3907 0.464452 GCGCTGGTTATGGGTCTAGT 59.536 55.000 0.00 0.00 0.00 2.57
3819 3908 1.806623 GCGCTGGTTATGGGTCTAGTG 60.807 57.143 0.00 0.00 0.00 2.74
3820 3909 1.806623 CGCTGGTTATGGGTCTAGTGC 60.807 57.143 0.00 0.00 0.00 4.40
3821 3910 1.486726 GCTGGTTATGGGTCTAGTGCT 59.513 52.381 0.00 0.00 0.00 4.40
3822 3911 2.698797 GCTGGTTATGGGTCTAGTGCTA 59.301 50.000 0.00 0.00 0.00 3.49
3823 3912 3.492829 GCTGGTTATGGGTCTAGTGCTAC 60.493 52.174 0.00 0.00 0.00 3.58
3824 3913 3.961408 CTGGTTATGGGTCTAGTGCTACT 59.039 47.826 0.00 0.00 0.00 2.57
3825 3914 3.704566 TGGTTATGGGTCTAGTGCTACTG 59.295 47.826 0.00 0.00 0.00 2.74
3826 3915 3.492829 GGTTATGGGTCTAGTGCTACTGC 60.493 52.174 0.00 0.00 40.20 4.40
3842 3931 2.877335 ACTGCAACTTAGTAGTAGCGC 58.123 47.619 0.00 0.00 32.49 5.92
3843 3932 2.492484 ACTGCAACTTAGTAGTAGCGCT 59.508 45.455 17.26 17.26 32.49 5.92
3844 3933 2.854777 CTGCAACTTAGTAGTAGCGCTG 59.145 50.000 22.90 2.27 33.17 5.18
3845 3934 2.194271 GCAACTTAGTAGTAGCGCTGG 58.806 52.381 22.90 2.29 33.17 4.85
3846 3935 2.416972 GCAACTTAGTAGTAGCGCTGGT 60.417 50.000 22.90 9.61 33.17 4.00
3847 3936 3.846360 CAACTTAGTAGTAGCGCTGGTT 58.154 45.455 22.90 7.82 33.17 3.67
3848 3937 3.505464 ACTTAGTAGTAGCGCTGGTTG 57.495 47.619 22.90 4.44 31.21 3.77
3849 3938 2.165845 ACTTAGTAGTAGCGCTGGTTGG 59.834 50.000 22.90 5.09 31.21 3.77
3850 3939 0.458669 TAGTAGTAGCGCTGGTTGGC 59.541 55.000 22.90 5.29 0.00 4.52
3851 3940 1.079405 GTAGTAGCGCTGGTTGGCA 60.079 57.895 22.90 0.00 0.00 4.92
3852 3941 0.672401 GTAGTAGCGCTGGTTGGCAA 60.672 55.000 22.90 0.00 0.00 4.52
3853 3942 0.672401 TAGTAGCGCTGGTTGGCAAC 60.672 55.000 22.90 21.92 0.00 4.17
3864 3953 3.041351 TGGCAACACGCGCTACAG 61.041 61.111 5.73 0.00 46.17 2.74
3865 3954 3.788766 GGCAACACGCGCTACAGG 61.789 66.667 5.73 0.00 43.84 4.00
3866 3955 3.041940 GCAACACGCGCTACAGGT 61.042 61.111 5.73 0.00 0.00 4.00
3867 3956 1.735198 GCAACACGCGCTACAGGTA 60.735 57.895 5.73 0.00 0.00 3.08
3868 3957 1.952266 GCAACACGCGCTACAGGTAC 61.952 60.000 5.73 0.00 0.00 3.34
3869 3958 1.080298 AACACGCGCTACAGGTACC 60.080 57.895 5.73 2.73 0.00 3.34
3870 3959 1.808531 AACACGCGCTACAGGTACCA 61.809 55.000 15.94 0.00 0.00 3.25
3871 3960 1.516386 CACGCGCTACAGGTACCAG 60.516 63.158 15.94 9.05 0.00 4.00
3872 3961 1.676635 ACGCGCTACAGGTACCAGA 60.677 57.895 15.94 0.00 0.00 3.86
3873 3962 1.064296 CGCGCTACAGGTACCAGAG 59.936 63.158 15.94 8.95 0.00 3.35
3874 3963 1.654954 CGCGCTACAGGTACCAGAGT 61.655 60.000 15.94 11.98 0.00 3.24
3875 3964 1.386533 GCGCTACAGGTACCAGAGTA 58.613 55.000 15.94 12.49 0.00 2.59
3876 3965 1.334243 GCGCTACAGGTACCAGAGTAG 59.666 57.143 23.97 23.97 37.57 2.57
3893 3982 4.937431 GCAGTAGCGATGGGCCCC 62.937 72.222 22.27 2.97 45.17 5.80
3894 3983 4.256180 CAGTAGCGATGGGCCCCC 62.256 72.222 22.27 10.60 45.17 5.40
3895 3984 4.499116 AGTAGCGATGGGCCCCCT 62.499 66.667 22.27 12.85 45.17 4.79
3896 3985 4.256180 GTAGCGATGGGCCCCCTG 62.256 72.222 22.27 9.87 45.17 4.45
3916 4005 2.670635 CAGCGCTACTGCTAAGTGG 58.329 57.895 10.99 0.00 45.23 4.00
3917 4006 0.108615 CAGCGCTACTGCTAAGTGGT 60.109 55.000 10.99 0.00 45.23 4.16
3918 4007 0.173708 AGCGCTACTGCTAAGTGGTC 59.826 55.000 8.99 0.00 45.14 4.02
3919 4008 0.806492 GCGCTACTGCTAAGTGGTCC 60.806 60.000 0.00 0.00 37.24 4.46
3920 4009 0.179108 CGCTACTGCTAAGTGGTCCC 60.179 60.000 0.00 0.00 37.24 4.46
3921 4010 0.902531 GCTACTGCTAAGTGGTCCCA 59.097 55.000 0.00 0.00 37.24 4.37
3922 4011 1.486726 GCTACTGCTAAGTGGTCCCAT 59.513 52.381 0.00 0.00 37.24 4.00
3923 4012 2.743183 GCTACTGCTAAGTGGTCCCATG 60.743 54.545 0.00 0.00 37.24 3.66
3924 4013 0.620556 ACTGCTAAGTGGTCCCATGG 59.379 55.000 4.14 4.14 34.48 3.66
3925 4014 0.749454 CTGCTAAGTGGTCCCATGGC 60.749 60.000 6.09 0.00 0.00 4.40
3926 4015 1.302949 GCTAAGTGGTCCCATGGCA 59.697 57.895 6.09 0.00 0.00 4.92
3927 4016 0.323360 GCTAAGTGGTCCCATGGCAA 60.323 55.000 6.09 0.00 0.00 4.52
3928 4017 1.463674 CTAAGTGGTCCCATGGCAAC 58.536 55.000 6.09 6.59 0.00 4.17
3929 4018 0.039035 TAAGTGGTCCCATGGCAACC 59.961 55.000 21.86 21.86 0.00 3.77
3930 4019 3.061848 GTGGTCCCATGGCAACCG 61.062 66.667 22.62 4.62 35.76 4.44
3931 4020 4.358841 TGGTCCCATGGCAACCGG 62.359 66.667 22.62 0.00 35.76 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 9.184523 CTTCCTAATGGGTAATATGAACACAAA 57.815 33.333 0.00 0.00 33.11 2.83
78 79 9.847224 TCTTTCTTCCTAATGGGTAATATGAAC 57.153 33.333 0.00 0.00 36.25 3.18
120 121 8.819643 AAAGTGCAAAGTTGTAAGTTGTTTAA 57.180 26.923 0.00 0.00 0.00 1.52
121 122 8.819643 AAAAGTGCAAAGTTGTAAGTTGTTTA 57.180 26.923 0.00 0.00 0.00 2.01
201 213 9.040939 TGCAAGTGATATATAACATGTGTGTAC 57.959 33.333 0.00 0.00 37.67 2.90
220 232 6.437928 AGTGTAAAATGTGTACATGCAAGTG 58.562 36.000 4.51 0.00 36.56 3.16
227 239 5.626142 TGGGTGAGTGTAAAATGTGTACAT 58.374 37.500 0.00 0.00 38.41 2.29
232 244 4.909696 TGTTGGGTGAGTGTAAAATGTG 57.090 40.909 0.00 0.00 0.00 3.21
233 245 5.009610 GTGATGTTGGGTGAGTGTAAAATGT 59.990 40.000 0.00 0.00 0.00 2.71
249 261 7.959689 TTTCATGGGTATTTTTGTGATGTTG 57.040 32.000 0.00 0.00 0.00 3.33
275 287 9.999009 CTTTACCTTTTTCTTTTTCTTAGTCGT 57.001 29.630 0.00 0.00 0.00 4.34
276 288 8.955002 GCTTTACCTTTTTCTTTTTCTTAGTCG 58.045 33.333 0.00 0.00 0.00 4.18
320 332 5.347635 CCGACGATGTTTCATCTTGTTCTTA 59.652 40.000 0.00 0.00 0.00 2.10
335 347 3.530265 TTGTTTATAGGCCGACGATGT 57.470 42.857 0.00 0.00 0.00 3.06
339 351 3.619483 TGTTGATTGTTTATAGGCCGACG 59.381 43.478 0.00 0.00 0.00 5.12
343 355 5.885912 TCCTTCTGTTGATTGTTTATAGGCC 59.114 40.000 0.00 0.00 0.00 5.19
359 374 1.583054 GCACTCGTGTTTCCTTCTGT 58.417 50.000 0.00 0.00 0.00 3.41
397 412 2.305927 CCACTGGTTTGGGTCAGTAGAT 59.694 50.000 0.00 0.00 41.71 1.98
408 423 0.817634 TTCGACTGGCCACTGGTTTG 60.818 55.000 0.00 0.00 0.00 2.93
416 431 1.028905 CCAAAAGTTTCGACTGGCCA 58.971 50.000 4.71 4.71 0.00 5.36
417 432 0.318699 GCCAAAAGTTTCGACTGGCC 60.319 55.000 15.39 0.00 45.60 5.36
418 433 3.179433 GCCAAAAGTTTCGACTGGC 57.821 52.632 12.13 12.13 45.27 4.85
419 434 0.313987 GGGCCAAAAGTTTCGACTGG 59.686 55.000 4.39 0.40 0.00 4.00
420 435 0.313987 GGGGCCAAAAGTTTCGACTG 59.686 55.000 4.39 0.00 0.00 3.51
421 436 0.106419 TGGGGCCAAAAGTTTCGACT 60.106 50.000 4.39 0.00 0.00 4.18
422 437 0.747852 TTGGGGCCAAAAGTTTCGAC 59.252 50.000 4.39 0.00 32.44 4.20
423 438 1.137282 GTTTGGGGCCAAAAGTTTCGA 59.863 47.619 6.26 0.00 45.86 3.71
424 439 1.134670 TGTTTGGGGCCAAAAGTTTCG 60.135 47.619 6.26 0.00 45.86 3.46
425 440 2.700722 TGTTTGGGGCCAAAAGTTTC 57.299 45.000 6.26 0.00 45.86 2.78
426 441 2.507471 TCATGTTTGGGGCCAAAAGTTT 59.493 40.909 6.26 0.00 45.86 2.66
427 442 2.122768 TCATGTTTGGGGCCAAAAGTT 58.877 42.857 6.26 0.00 45.86 2.66
428 443 1.416030 GTCATGTTTGGGGCCAAAAGT 59.584 47.619 6.26 0.00 45.86 2.66
429 444 1.415659 TGTCATGTTTGGGGCCAAAAG 59.584 47.619 6.26 0.00 45.86 2.27
430 445 1.415659 CTGTCATGTTTGGGGCCAAAA 59.584 47.619 4.39 3.03 45.86 2.44
431 446 1.047002 CTGTCATGTTTGGGGCCAAA 58.953 50.000 4.39 0.00 42.77 3.28
432 447 1.470996 GCTGTCATGTTTGGGGCCAA 61.471 55.000 4.39 0.00 0.00 4.52
433 448 1.907807 GCTGTCATGTTTGGGGCCA 60.908 57.895 4.39 0.00 0.00 5.36
434 449 1.880819 CTGCTGTCATGTTTGGGGCC 61.881 60.000 0.00 0.00 0.00 5.80
439 454 3.181498 TGTTGTGTCTGCTGTCATGTTTG 60.181 43.478 0.00 0.00 0.00 2.93
441 456 2.615447 CTGTTGTGTCTGCTGTCATGTT 59.385 45.455 0.00 0.00 0.00 2.71
478 494 4.263639 ACTGAATTTCTGCTTGGAGATCCA 60.264 41.667 0.00 0.00 45.94 3.41
480 496 4.438472 GCACTGAATTTCTGCTTGGAGATC 60.438 45.833 3.45 0.00 0.00 2.75
485 501 1.891150 AGGCACTGAATTTCTGCTTGG 59.109 47.619 9.63 0.00 37.18 3.61
486 502 2.555325 TGAGGCACTGAATTTCTGCTTG 59.445 45.455 9.63 1.55 41.55 4.01
500 516 5.715434 TTGGGTTAGTATTTTTGAGGCAC 57.285 39.130 0.00 0.00 0.00 5.01
526 544 7.282224 AGCTATGTGTAATTCGCCTGAAAAATA 59.718 33.333 0.00 0.00 37.71 1.40
562 584 1.129437 GGCGCAGTGAGATGTTCTTTC 59.871 52.381 10.83 0.00 0.00 2.62
566 589 0.390340 TCTGGCGCAGTGAGATGTTC 60.390 55.000 10.83 0.00 32.61 3.18
572 595 1.521010 CCAGATCTGGCGCAGTGAG 60.521 63.158 28.45 2.08 44.73 3.51
643 677 2.620115 CAATAATGAGCGTGGAGGCATT 59.380 45.455 0.00 0.00 35.38 3.56
742 776 3.758023 TGCATCCATTGTTCCAAGTGTAG 59.242 43.478 0.00 0.00 0.00 2.74
793 828 1.134371 GTGGTGTTATCCTCTCCTGGC 60.134 57.143 0.00 0.00 0.00 4.85
801 836 0.328258 GCAGGGTGTGGTGTTATCCT 59.672 55.000 0.00 0.00 0.00 3.24
802 837 1.024579 CGCAGGGTGTGGTGTTATCC 61.025 60.000 0.00 0.00 0.00 2.59
803 838 0.036765 TCGCAGGGTGTGGTGTTATC 60.037 55.000 0.00 0.00 0.00 1.75
805 840 0.398696 AATCGCAGGGTGTGGTGTTA 59.601 50.000 0.00 0.00 0.00 2.41
806 841 1.150536 AATCGCAGGGTGTGGTGTT 59.849 52.632 0.00 0.00 0.00 3.32
808 843 1.302431 TCAATCGCAGGGTGTGGTG 60.302 57.895 0.00 0.00 0.00 4.17
809 844 1.302511 GTCAATCGCAGGGTGTGGT 60.303 57.895 0.00 0.00 0.00 4.16
817 858 2.004583 TTAAGGACGGTCAATCGCAG 57.995 50.000 10.76 0.00 0.00 5.18
851 892 3.669557 GCATACGTGTTGGTTGGTTGATC 60.670 47.826 0.00 0.00 0.00 2.92
868 909 3.747099 ATGCAACGTGAAAGAGCATAC 57.253 42.857 0.00 0.00 43.45 2.39
873 923 4.472691 TGAAGAATGCAACGTGAAAGAG 57.527 40.909 0.00 0.00 0.00 2.85
881 931 1.527696 GCGACATGAAGAATGCAACG 58.472 50.000 0.00 0.00 40.22 4.10
924 975 3.489908 GCCTAATTAAGAAGCAGCCAAGC 60.490 47.826 0.00 0.00 0.00 4.01
938 989 4.316025 AAAGCTTCACCCAGCCTAATTA 57.684 40.909 0.00 0.00 41.12 1.40
939 990 2.907458 AAGCTTCACCCAGCCTAATT 57.093 45.000 0.00 0.00 41.12 1.40
940 991 2.907458 AAAGCTTCACCCAGCCTAAT 57.093 45.000 0.00 0.00 41.12 1.73
941 992 2.514803 GAAAAGCTTCACCCAGCCTAA 58.485 47.619 0.00 0.00 41.12 2.69
942 993 1.271926 GGAAAAGCTTCACCCAGCCTA 60.272 52.381 0.00 0.00 41.12 3.93
960 1011 4.553330 AAGTTTCTTGCGAGATTAGGGA 57.447 40.909 3.98 0.00 0.00 4.20
997 1048 1.404391 GTTTGCAGGCCATCTCATGAG 59.596 52.381 17.07 17.07 0.00 2.90
1013 1070 3.251004 GGTGTTTAGAGCAGTCTGGTTTG 59.749 47.826 5.91 0.00 33.84 2.93
1016 1073 2.330216 AGGTGTTTAGAGCAGTCTGGT 58.670 47.619 3.69 3.69 33.84 4.00
1018 1075 4.576463 ACAAAAGGTGTTTAGAGCAGTCTG 59.424 41.667 0.00 0.00 37.01 3.51
1049 1106 6.874664 TGCCAAAACATCGTAAAGTATACTGA 59.125 34.615 6.06 0.00 0.00 3.41
1050 1107 7.067532 TGCCAAAACATCGTAAAGTATACTG 57.932 36.000 6.06 0.00 0.00 2.74
1053 1110 6.408035 TCCTGCCAAAACATCGTAAAGTATA 58.592 36.000 0.00 0.00 0.00 1.47
1054 1111 5.250200 TCCTGCCAAAACATCGTAAAGTAT 58.750 37.500 0.00 0.00 0.00 2.12
1121 1190 1.379642 GGGGGCGCAAGAATCTGAAG 61.380 60.000 10.83 0.00 43.02 3.02
1219 1293 1.522355 CGTTGAGGCAGGCGATGAT 60.522 57.895 0.00 0.00 0.00 2.45
1303 1377 3.499737 CCAGCCGTTCATGGACGC 61.500 66.667 21.52 15.86 41.50 5.19
1325 1399 2.592001 CGCGATCGAGGAGGAGGA 60.592 66.667 21.57 0.00 38.10 3.71
2009 2089 4.200283 CCTCTGCCTCTCCGTCGC 62.200 72.222 0.00 0.00 0.00 5.19
2049 2129 4.544689 CAGAGCTCCGACGAGGCG 62.545 72.222 10.93 0.00 40.77 5.52
2124 2207 0.412244 TGTAGTACTGCAGGAGGGGT 59.588 55.000 19.93 0.00 0.00 4.95
2151 2234 3.641986 GTTTTGTCGCCGTCGCCA 61.642 61.111 0.00 0.00 35.26 5.69
2153 2236 3.213009 TTCGTTTTGTCGCCGTCGC 62.213 57.895 0.00 0.00 35.26 5.19
2154 2237 1.154908 CTTCGTTTTGTCGCCGTCG 60.155 57.895 0.00 0.00 0.00 5.12
2155 2238 0.578211 TTCTTCGTTTTGTCGCCGTC 59.422 50.000 0.00 0.00 0.00 4.79
2156 2239 0.580104 CTTCTTCGTTTTGTCGCCGT 59.420 50.000 0.00 0.00 0.00 5.68
2157 2240 0.856641 TCTTCTTCGTTTTGTCGCCG 59.143 50.000 0.00 0.00 0.00 6.46
2158 2241 3.328237 TTTCTTCTTCGTTTTGTCGCC 57.672 42.857 0.00 0.00 0.00 5.54
2159 2242 3.724257 CCTTTTCTTCTTCGTTTTGTCGC 59.276 43.478 0.00 0.00 0.00 5.19
2160 2243 4.962151 GTCCTTTTCTTCTTCGTTTTGTCG 59.038 41.667 0.00 0.00 0.00 4.35
2161 2244 5.271625 GGTCCTTTTCTTCTTCGTTTTGTC 58.728 41.667 0.00 0.00 0.00 3.18
2162 2245 4.201881 CGGTCCTTTTCTTCTTCGTTTTGT 60.202 41.667 0.00 0.00 0.00 2.83
2163 2246 4.201881 ACGGTCCTTTTCTTCTTCGTTTTG 60.202 41.667 0.00 0.00 0.00 2.44
2164 2247 3.943381 ACGGTCCTTTTCTTCTTCGTTTT 59.057 39.130 0.00 0.00 0.00 2.43
2165 2248 3.311596 CACGGTCCTTTTCTTCTTCGTTT 59.688 43.478 0.00 0.00 0.00 3.60
2360 2443 2.284798 GATGCTGCCGAGGAAGACGA 62.285 60.000 0.16 0.00 0.00 4.20
2362 2445 1.880340 CGATGCTGCCGAGGAAGAC 60.880 63.158 0.16 0.00 0.00 3.01
2365 2448 4.838152 GGCGATGCTGCCGAGGAA 62.838 66.667 0.00 0.00 46.75 3.36
2374 2457 2.031163 GGATAAGCCGGCGATGCT 59.969 61.111 23.20 6.66 41.89 3.79
2386 2469 1.459539 CGAGGAGGCCCAGGGATAA 60.460 63.158 10.89 0.00 33.88 1.75
2430 2513 0.037605 AGAGAAATTTCGTCGGCGGT 60.038 50.000 10.62 0.00 38.89 5.68
2487 2570 1.585521 CGCGATGACGTACTCCCAC 60.586 63.158 0.00 0.00 41.98 4.61
2577 2660 2.283821 TTGCCCCATGCCAGAACC 60.284 61.111 0.00 0.00 40.16 3.62
2655 2738 3.390521 CCAGCTACGGCCACCTGA 61.391 66.667 2.24 0.00 39.73 3.86
2761 2844 2.446036 GGGCTCCCAGGGTATCGT 60.446 66.667 5.01 0.00 35.81 3.73
2808 2891 4.007644 GCCCACAAAAGCCCAGCC 62.008 66.667 0.00 0.00 0.00 4.85
2841 2924 0.040204 CCACCTTCATGCCCCTTCTT 59.960 55.000 0.00 0.00 0.00 2.52
2923 3006 8.339714 GTTGGACCCTTTAAATTAAGCAAAAAC 58.660 33.333 0.00 0.00 0.00 2.43
2963 3046 9.787435 ACAAAATTTGTTCTACCACTCATACTA 57.213 29.630 5.41 0.00 42.22 1.82
3040 3123 5.710513 TGCAGAATAAAGCACTGACAAAT 57.289 34.783 0.00 0.00 35.51 2.32
3133 3221 6.020041 CCCTTTTAGATTCTAAGACGCGTTAC 60.020 42.308 15.53 0.11 0.00 2.50
3137 3225 4.267928 CACCCTTTTAGATTCTAAGACGCG 59.732 45.833 3.53 3.53 0.00 6.01
3140 3228 9.449719 TTTCATCACCCTTTTAGATTCTAAGAC 57.550 33.333 6.26 0.00 0.00 3.01
3187 3275 9.545611 GCAAATTTGATGAAACCAAATAATGTC 57.454 29.630 22.31 0.00 41.71 3.06
3194 3282 5.884792 AGTTGGCAAATTTGATGAAACCAAA 59.115 32.000 22.31 6.68 37.65 3.28
3256 3344 9.947433 ATGTCATCATTTGGTCATTGTATTTTT 57.053 25.926 0.00 0.00 0.00 1.94
3257 3345 9.373603 CATGTCATCATTTGGTCATTGTATTTT 57.626 29.630 0.00 0.00 31.15 1.82
3259 3347 8.192774 GTCATGTCATCATTTGGTCATTGTATT 58.807 33.333 0.00 0.00 31.15 1.89
3260 3348 7.558807 AGTCATGTCATCATTTGGTCATTGTAT 59.441 33.333 0.00 0.00 31.15 2.29
3261 3349 6.885918 AGTCATGTCATCATTTGGTCATTGTA 59.114 34.615 0.00 0.00 31.15 2.41
3262 3350 5.713389 AGTCATGTCATCATTTGGTCATTGT 59.287 36.000 0.00 0.00 31.15 2.71
3263 3351 6.203808 AGTCATGTCATCATTTGGTCATTG 57.796 37.500 0.00 0.00 31.15 2.82
3264 3352 5.065602 CGAGTCATGTCATCATTTGGTCATT 59.934 40.000 0.00 0.00 31.15 2.57
3265 3353 4.573607 CGAGTCATGTCATCATTTGGTCAT 59.426 41.667 0.00 0.00 31.15 3.06
3266 3354 3.934579 CGAGTCATGTCATCATTTGGTCA 59.065 43.478 0.00 0.00 31.15 4.02
3267 3355 3.242543 GCGAGTCATGTCATCATTTGGTC 60.243 47.826 0.00 0.00 31.15 4.02
3268 3356 2.679837 GCGAGTCATGTCATCATTTGGT 59.320 45.455 0.00 0.00 31.15 3.67
3269 3357 2.032550 GGCGAGTCATGTCATCATTTGG 59.967 50.000 0.00 0.00 31.15 3.28
3270 3358 2.286008 CGGCGAGTCATGTCATCATTTG 60.286 50.000 0.00 0.00 31.15 2.32
3271 3359 1.935873 CGGCGAGTCATGTCATCATTT 59.064 47.619 0.00 0.00 31.15 2.32
3272 3360 1.134699 ACGGCGAGTCATGTCATCATT 60.135 47.619 16.62 0.00 31.15 2.57
3273 3361 0.461548 ACGGCGAGTCATGTCATCAT 59.538 50.000 16.62 0.00 34.21 2.45
3274 3362 1.099689 TACGGCGAGTCATGTCATCA 58.900 50.000 16.62 0.00 0.00 3.07
3275 3363 2.423926 ATACGGCGAGTCATGTCATC 57.576 50.000 16.62 0.00 0.00 2.92
3276 3364 3.426292 CGATATACGGCGAGTCATGTCAT 60.426 47.826 16.62 0.00 38.46 3.06
3277 3365 2.095919 CGATATACGGCGAGTCATGTCA 60.096 50.000 16.62 0.00 38.46 3.58
3278 3366 2.506865 CGATATACGGCGAGTCATGTC 58.493 52.381 16.62 7.92 38.46 3.06
3279 3367 2.613730 CGATATACGGCGAGTCATGT 57.386 50.000 16.62 0.00 38.46 3.21
3284 3372 7.735429 CGTGAAGTAACGATATACGGCGAGT 62.735 48.000 16.62 3.61 46.49 4.18
3285 3373 5.407899 CGTGAAGTAACGATATACGGCGAG 61.408 50.000 16.62 0.00 46.49 5.03
3286 3374 3.604543 CGTGAAGTAACGATATACGGCGA 60.605 47.826 16.62 0.00 46.49 5.54
3287 3375 2.648897 CGTGAAGTAACGATATACGGCG 59.351 50.000 4.80 4.80 46.49 6.46
3288 3376 2.403037 GCGTGAAGTAACGATATACGGC 59.597 50.000 0.17 0.00 46.49 5.68
3346 3434 1.666189 GCCTTCGCAGGAGTTGTAATC 59.334 52.381 4.87 0.00 44.19 1.75
3348 3436 0.321298 GGCCTTCGCAGGAGTTGTAA 60.321 55.000 4.87 0.00 44.19 2.41
3380 3468 2.796593 GGTTTTGTTGCTCTGATTGTGC 59.203 45.455 0.00 0.00 35.88 4.57
3386 3474 4.340666 TGCTAAATGGTTTTGTTGCTCTGA 59.659 37.500 0.00 0.00 0.00 3.27
3395 3483 9.559958 CACTATTTCTACTGCTAAATGGTTTTG 57.440 33.333 0.00 0.00 35.41 2.44
3400 3488 7.275920 AGACCACTATTTCTACTGCTAAATGG 58.724 38.462 0.00 0.00 31.89 3.16
3479 3567 3.063452 GTGCGGTCGTTTGATATGATGTT 59.937 43.478 0.00 0.00 0.00 2.71
3494 3582 7.690228 TGTATGTTAATCATTTTAGTGCGGTC 58.310 34.615 0.00 0.00 37.91 4.79
3545 3634 6.072508 TGCTTTGGTAAATTCAGCTCAGTTAG 60.073 38.462 0.00 0.00 0.00 2.34
3607 3696 2.369394 CCTAAGATGGTCCAAGGCAAC 58.631 52.381 0.00 0.00 0.00 4.17
3610 3699 1.213296 TCCCTAAGATGGTCCAAGGC 58.787 55.000 0.00 0.00 0.00 4.35
3686 3775 6.820152 CCATGATATCAGACAGTTTGAAGTCA 59.180 38.462 11.78 11.72 37.23 3.41
3693 3782 6.805016 AGAGTCCATGATATCAGACAGTTT 57.195 37.500 20.97 6.22 0.00 2.66
3745 3834 1.078709 GTAGTGCATGCTTTCTGCGA 58.921 50.000 20.33 0.00 46.63 5.10
3759 3848 6.041637 TGTGTATAGGCATTTCCCTAGTAGTG 59.958 42.308 0.00 0.00 40.62 2.74
3760 3849 6.141083 TGTGTATAGGCATTTCCCTAGTAGT 58.859 40.000 0.00 0.00 40.62 2.73
3761 3850 6.665992 TGTGTATAGGCATTTCCCTAGTAG 57.334 41.667 0.00 0.00 40.62 2.57
3762 3851 6.785466 TCATGTGTATAGGCATTTCCCTAGTA 59.215 38.462 0.00 0.00 40.62 1.82
3763 3852 5.606749 TCATGTGTATAGGCATTTCCCTAGT 59.393 40.000 0.00 0.00 40.62 2.57
3764 3853 6.114187 TCATGTGTATAGGCATTTCCCTAG 57.886 41.667 0.00 0.00 40.62 3.02
3765 3854 5.513094 GCTCATGTGTATAGGCATTTCCCTA 60.513 44.000 0.00 0.00 41.48 3.53
3766 3855 4.747931 GCTCATGTGTATAGGCATTTCCCT 60.748 45.833 0.00 0.00 39.05 4.20
3767 3856 3.503748 GCTCATGTGTATAGGCATTTCCC 59.496 47.826 0.00 0.00 34.51 3.97
3768 3857 4.392940 AGCTCATGTGTATAGGCATTTCC 58.607 43.478 0.00 0.00 0.00 3.13
3769 3858 6.708054 ACTAAGCTCATGTGTATAGGCATTTC 59.292 38.462 11.21 0.00 0.00 2.17
3770 3859 6.595682 ACTAAGCTCATGTGTATAGGCATTT 58.404 36.000 11.21 0.00 0.00 2.32
3771 3860 6.179906 ACTAAGCTCATGTGTATAGGCATT 57.820 37.500 11.21 0.00 0.00 3.56
3772 3861 5.815233 ACTAAGCTCATGTGTATAGGCAT 57.185 39.130 11.21 0.00 0.00 4.40
3773 3862 5.833667 ACTACTAAGCTCATGTGTATAGGCA 59.166 40.000 11.21 0.00 0.00 4.75
3774 3863 6.334102 ACTACTAAGCTCATGTGTATAGGC 57.666 41.667 11.21 0.00 0.00 3.93
3775 3864 7.531716 GCTACTACTAAGCTCATGTGTATAGG 58.468 42.308 11.21 1.69 37.01 2.57
3776 3865 7.237871 CGCTACTACTAAGCTCATGTGTATAG 58.762 42.308 0.00 0.52 37.85 1.31
3777 3866 6.348295 GCGCTACTACTAAGCTCATGTGTATA 60.348 42.308 0.00 0.00 37.85 1.47
3778 3867 5.563085 GCGCTACTACTAAGCTCATGTGTAT 60.563 44.000 0.00 0.00 37.85 2.29
3779 3868 4.261072 GCGCTACTACTAAGCTCATGTGTA 60.261 45.833 0.00 0.00 37.85 2.90
3780 3869 3.489398 GCGCTACTACTAAGCTCATGTGT 60.489 47.826 0.00 0.00 37.85 3.72
3781 3870 3.046390 GCGCTACTACTAAGCTCATGTG 58.954 50.000 0.00 0.00 37.85 3.21
3782 3871 2.952978 AGCGCTACTACTAAGCTCATGT 59.047 45.455 8.99 0.00 37.85 3.21
3783 3872 3.304257 CAGCGCTACTACTAAGCTCATG 58.696 50.000 10.99 0.00 37.85 3.07
3784 3873 2.294791 CCAGCGCTACTACTAAGCTCAT 59.705 50.000 10.99 0.00 37.85 2.90
3785 3874 1.676529 CCAGCGCTACTACTAAGCTCA 59.323 52.381 10.99 0.00 37.85 4.26
3786 3875 1.677052 ACCAGCGCTACTACTAAGCTC 59.323 52.381 10.99 0.00 37.85 4.09
3787 3876 1.765230 ACCAGCGCTACTACTAAGCT 58.235 50.000 10.99 0.00 37.85 3.74
3788 3877 2.580966 AACCAGCGCTACTACTAAGC 57.419 50.000 10.99 0.00 36.60 3.09
3789 3878 4.547532 CCATAACCAGCGCTACTACTAAG 58.452 47.826 10.99 0.00 0.00 2.18
3790 3879 3.319972 CCCATAACCAGCGCTACTACTAA 59.680 47.826 10.99 0.00 0.00 2.24
3791 3880 2.889045 CCCATAACCAGCGCTACTACTA 59.111 50.000 10.99 0.00 0.00 1.82
3792 3881 1.687123 CCCATAACCAGCGCTACTACT 59.313 52.381 10.99 0.00 0.00 2.57
3793 3882 1.411612 ACCCATAACCAGCGCTACTAC 59.588 52.381 10.99 0.00 0.00 2.73
3794 3883 1.684983 GACCCATAACCAGCGCTACTA 59.315 52.381 10.99 1.60 0.00 1.82
3795 3884 0.464452 GACCCATAACCAGCGCTACT 59.536 55.000 10.99 0.00 0.00 2.57
3796 3885 0.464452 AGACCCATAACCAGCGCTAC 59.536 55.000 10.99 0.00 0.00 3.58
3797 3886 1.961394 CTAGACCCATAACCAGCGCTA 59.039 52.381 10.99 0.00 0.00 4.26
3798 3887 0.753262 CTAGACCCATAACCAGCGCT 59.247 55.000 2.64 2.64 0.00 5.92
3799 3888 0.464452 ACTAGACCCATAACCAGCGC 59.536 55.000 0.00 0.00 0.00 5.92
3800 3889 1.806623 GCACTAGACCCATAACCAGCG 60.807 57.143 0.00 0.00 0.00 5.18
3801 3890 1.486726 AGCACTAGACCCATAACCAGC 59.513 52.381 0.00 0.00 0.00 4.85
3802 3891 3.961408 AGTAGCACTAGACCCATAACCAG 59.039 47.826 0.00 0.00 0.00 4.00
3803 3892 3.704566 CAGTAGCACTAGACCCATAACCA 59.295 47.826 0.00 0.00 0.00 3.67
3804 3893 3.492829 GCAGTAGCACTAGACCCATAACC 60.493 52.174 0.00 0.00 41.58 2.85
3805 3894 3.718815 GCAGTAGCACTAGACCCATAAC 58.281 50.000 0.00 0.00 41.58 1.89
3825 3914 2.194271 CCAGCGCTACTACTAAGTTGC 58.806 52.381 10.99 2.48 46.81 4.17
3826 3915 3.505464 ACCAGCGCTACTACTAAGTTG 57.495 47.619 10.99 0.00 37.15 3.16
3827 3916 3.368116 CCAACCAGCGCTACTACTAAGTT 60.368 47.826 10.99 1.02 37.15 2.66
3828 3917 2.165845 CCAACCAGCGCTACTACTAAGT 59.834 50.000 10.99 0.00 39.91 2.24
3829 3918 2.810650 CCAACCAGCGCTACTACTAAG 58.189 52.381 10.99 0.00 0.00 2.18
3830 3919 1.134907 GCCAACCAGCGCTACTACTAA 60.135 52.381 10.99 0.00 0.00 2.24
3831 3920 0.458669 GCCAACCAGCGCTACTACTA 59.541 55.000 10.99 0.00 0.00 1.82
3832 3921 1.218316 GCCAACCAGCGCTACTACT 59.782 57.895 10.99 0.00 0.00 2.57
3833 3922 0.672401 TTGCCAACCAGCGCTACTAC 60.672 55.000 10.99 0.00 34.65 2.73
3834 3923 0.672401 GTTGCCAACCAGCGCTACTA 60.672 55.000 10.99 0.00 34.65 1.82
3835 3924 1.966451 GTTGCCAACCAGCGCTACT 60.966 57.895 10.99 0.00 34.65 2.57
3836 3925 2.258013 TGTTGCCAACCAGCGCTAC 61.258 57.895 10.99 1.92 34.65 3.58
3837 3926 2.112087 TGTTGCCAACCAGCGCTA 59.888 55.556 10.99 0.00 34.65 4.26
3838 3927 3.595758 GTGTTGCCAACCAGCGCT 61.596 61.111 2.64 2.64 33.07 5.92
3839 3928 4.980903 CGTGTTGCCAACCAGCGC 62.981 66.667 4.90 0.00 34.65 5.92
3840 3929 4.980903 GCGTGTTGCCAACCAGCG 62.981 66.667 4.90 8.31 37.76 5.18
3841 3930 4.980903 CGCGTGTTGCCAACCAGC 62.981 66.667 4.90 9.45 42.08 4.85
3842 3931 4.980903 GCGCGTGTTGCCAACCAG 62.981 66.667 8.43 0.02 42.08 4.00
3844 3933 3.350612 TAGCGCGTGTTGCCAACC 61.351 61.111 8.43 0.00 42.08 3.77
3845 3934 2.127383 GTAGCGCGTGTTGCCAAC 60.127 61.111 8.43 0.00 42.08 3.77
3846 3935 2.589159 TGTAGCGCGTGTTGCCAA 60.589 55.556 8.43 0.00 42.08 4.52
3847 3936 3.041351 CTGTAGCGCGTGTTGCCA 61.041 61.111 8.43 0.00 42.08 4.92
3848 3937 3.788766 CCTGTAGCGCGTGTTGCC 61.789 66.667 8.43 0.00 42.08 4.52
3849 3938 1.735198 TACCTGTAGCGCGTGTTGC 60.735 57.895 8.43 0.00 41.47 4.17
3850 3939 1.349259 GGTACCTGTAGCGCGTGTTG 61.349 60.000 8.43 0.00 0.00 3.33
3851 3940 1.080298 GGTACCTGTAGCGCGTGTT 60.080 57.895 8.43 0.00 0.00 3.32
3852 3941 2.209064 CTGGTACCTGTAGCGCGTGT 62.209 60.000 14.36 0.00 36.42 4.49
3853 3942 1.516386 CTGGTACCTGTAGCGCGTG 60.516 63.158 14.36 0.00 36.42 5.34
3854 3943 1.654954 CTCTGGTACCTGTAGCGCGT 61.655 60.000 14.36 0.00 36.42 6.01
3855 3944 1.064296 CTCTGGTACCTGTAGCGCG 59.936 63.158 14.36 0.00 36.42 6.86
3856 3945 1.334243 CTACTCTGGTACCTGTAGCGC 59.666 57.143 14.36 0.00 36.42 5.92
3857 3946 1.334243 GCTACTCTGGTACCTGTAGCG 59.666 57.143 30.14 14.54 45.09 4.26
3859 3948 3.622630 ACTGCTACTCTGGTACCTGTAG 58.377 50.000 23.56 23.56 36.44 2.74
3860 3949 3.733883 ACTGCTACTCTGGTACCTGTA 57.266 47.619 14.36 12.13 0.00 2.74
3861 3950 2.606751 ACTGCTACTCTGGTACCTGT 57.393 50.000 14.36 11.64 0.00 4.00
3862 3951 2.359531 GCTACTGCTACTCTGGTACCTG 59.640 54.545 14.36 13.33 36.03 4.00
3863 3952 2.657143 GCTACTGCTACTCTGGTACCT 58.343 52.381 14.36 0.00 36.03 3.08
3864 3953 1.334243 CGCTACTGCTACTCTGGTACC 59.666 57.143 4.43 4.43 36.97 3.34
3865 3954 2.286872 TCGCTACTGCTACTCTGGTAC 58.713 52.381 0.00 0.00 36.97 3.34
3866 3955 2.704464 TCGCTACTGCTACTCTGGTA 57.296 50.000 0.00 0.00 36.97 3.25
3867 3956 1.678627 CATCGCTACTGCTACTCTGGT 59.321 52.381 0.00 0.00 36.97 4.00
3868 3957 1.000827 CCATCGCTACTGCTACTCTGG 60.001 57.143 0.00 0.00 36.97 3.86
3869 3958 1.000827 CCCATCGCTACTGCTACTCTG 60.001 57.143 0.00 0.00 36.97 3.35
3870 3959 1.323412 CCCATCGCTACTGCTACTCT 58.677 55.000 0.00 0.00 36.97 3.24
3871 3960 0.319125 GCCCATCGCTACTGCTACTC 60.319 60.000 0.00 0.00 36.97 2.59
3872 3961 1.742768 GCCCATCGCTACTGCTACT 59.257 57.895 0.00 0.00 36.97 2.57
3873 3962 1.301009 GGCCCATCGCTACTGCTAC 60.301 63.158 0.00 0.00 37.74 3.58
3874 3963 2.507854 GGGCCCATCGCTACTGCTA 61.508 63.158 19.95 0.00 37.74 3.49
3875 3964 3.866582 GGGCCCATCGCTACTGCT 61.867 66.667 19.95 0.00 37.74 4.24
3876 3965 4.937431 GGGGCCCATCGCTACTGC 62.937 72.222 26.86 0.00 37.74 4.40
3877 3966 4.256180 GGGGGCCCATCGCTACTG 62.256 72.222 26.86 0.00 37.74 2.74
3878 3967 4.499116 AGGGGGCCCATCGCTACT 62.499 66.667 26.86 7.23 38.92 2.57
3879 3968 4.256180 CAGGGGGCCCATCGCTAC 62.256 72.222 26.86 4.50 38.92 3.58
3891 3980 4.845580 CAGTAGCGCTGCCAGGGG 62.846 72.222 22.90 2.11 38.52 4.79
3902 3991 0.902531 TGGGACCACTTAGCAGTAGC 59.097 55.000 0.00 0.00 42.56 3.58
3903 3992 2.158900 CCATGGGACCACTTAGCAGTAG 60.159 54.545 2.85 0.00 0.00 2.57
3904 3993 1.837439 CCATGGGACCACTTAGCAGTA 59.163 52.381 2.85 0.00 0.00 2.74
3905 3994 0.620556 CCATGGGACCACTTAGCAGT 59.379 55.000 2.85 0.00 0.00 4.40
3906 3995 0.749454 GCCATGGGACCACTTAGCAG 60.749 60.000 15.13 0.00 0.00 4.24
3907 3996 1.302949 GCCATGGGACCACTTAGCA 59.697 57.895 15.13 0.00 0.00 3.49
3908 3997 0.323360 TTGCCATGGGACCACTTAGC 60.323 55.000 15.13 0.00 0.00 3.09
3909 3998 1.463674 GTTGCCATGGGACCACTTAG 58.536 55.000 15.13 0.00 0.00 2.18
3910 3999 0.039035 GGTTGCCATGGGACCACTTA 59.961 55.000 15.13 0.00 33.61 2.24
3911 4000 1.228862 GGTTGCCATGGGACCACTT 60.229 57.895 15.13 0.00 33.61 3.16
3912 4001 2.440599 GGTTGCCATGGGACCACT 59.559 61.111 15.13 0.00 33.61 4.00
3913 4002 3.061848 CGGTTGCCATGGGACCAC 61.062 66.667 15.13 6.71 32.95 4.16
3914 4003 4.358841 CCGGTTGCCATGGGACCA 62.359 66.667 15.13 0.00 32.95 4.02
3917 4006 4.738998 CTGCCGGTTGCCATGGGA 62.739 66.667 15.13 8.24 40.16 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.