Multiple sequence alignment - TraesCS2B01G128500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G128500 chr2B 100.000 2393 0 0 1 2393 96089458 96091850 0.000000e+00 4420.0
1 TraesCS2B01G128500 chr2B 85.658 509 63 6 861 1366 96241822 96242323 5.860000e-146 527.0
2 TraesCS2B01G128500 chr2B 87.871 404 43 2 966 1366 96242515 96242915 1.000000e-128 470.0
3 TraesCS2B01G128500 chr2B 82.111 559 66 19 861 1400 96110410 96110953 4.690000e-122 448.0
4 TraesCS2B01G128500 chr2B 81.071 280 50 3 461 740 195058127 195058403 1.110000e-53 220.0
5 TraesCS2B01G128500 chr2B 85.965 171 20 4 471 640 569019537 569019704 1.890000e-41 180.0
6 TraesCS2B01G128500 chr2B 90.625 128 10 1 622 749 610016341 610016466 4.090000e-38 169.0
7 TraesCS2B01G128500 chr2B 95.161 62 3 0 462 523 75846345 75846406 5.440000e-17 99.0
8 TraesCS2B01G128500 chr2A 86.663 1702 143 32 737 2393 61818473 61820135 0.000000e+00 1808.0
9 TraesCS2B01G128500 chr2A 93.148 467 27 3 1 462 61818009 61818475 0.000000e+00 680.0
10 TraesCS2B01G128500 chr2A 83.408 446 54 9 976 1406 61971555 61971995 1.720000e-106 396.0
11 TraesCS2B01G128500 chr2A 93.860 114 7 0 628 741 107385729 107385616 3.160000e-39 172.0
12 TraesCS2B01G128500 chr2A 96.667 60 2 0 456 515 691479790 691479849 1.510000e-17 100.0
13 TraesCS2B01G128500 chr2A 87.342 79 10 0 461 539 745051830 745051908 9.110000e-15 91.6
14 TraesCS2B01G128500 chr2D 86.623 1697 144 37 737 2393 61319293 61320946 0.000000e+00 1799.0
15 TraesCS2B01G128500 chr2D 91.228 456 37 3 8 462 61318842 61319295 3.380000e-173 617.0
16 TraesCS2B01G128500 chr2D 84.937 478 61 7 886 1359 61348446 61348916 7.740000e-130 473.0
17 TraesCS2B01G128500 chr2D 81.071 280 50 3 461 740 136606434 136606710 1.110000e-53 220.0
18 TraesCS2B01G128500 chr5D 80.851 282 44 8 462 740 525082781 525083055 1.860000e-51 213.0
19 TraesCS2B01G128500 chr5D 82.400 125 19 1 2116 2240 384350993 384351114 3.250000e-19 106.0
20 TraesCS2B01G128500 chr4B 95.000 120 6 0 513 632 467274990 467274871 3.140000e-44 189.0
21 TraesCS2B01G128500 chr4B 94.309 123 6 1 513 635 165306509 165306630 1.130000e-43 187.0
22 TraesCS2B01G128500 chr6A 93.651 126 7 1 513 637 14480940 14481065 1.130000e-43 187.0
23 TraesCS2B01G128500 chr6A 92.857 42 3 0 2187 2228 607937366 607937325 7.140000e-06 62.1
24 TraesCS2B01G128500 chr6A 94.872 39 1 1 2192 2229 33253924 33253886 2.570000e-05 60.2
25 TraesCS2B01G128500 chr3B 92.308 130 8 2 513 641 616185275 616185403 1.460000e-42 183.0
26 TraesCS2B01G128500 chr5B 91.176 136 9 3 510 643 224621398 224621532 5.250000e-42 182.0
27 TraesCS2B01G128500 chr3A 92.683 123 9 0 622 744 197996708 197996830 6.800000e-41 178.0
28 TraesCS2B01G128500 chr7B 94.690 113 6 0 628 740 588875695 588875583 2.440000e-40 176.0
29 TraesCS2B01G128500 chr7B 77.703 148 26 5 2106 2249 381600756 381600612 1.520000e-12 84.2
30 TraesCS2B01G128500 chr1B 93.913 115 7 0 628 742 526522741 526522627 8.790000e-40 174.0
31 TraesCS2B01G128500 chr6D 92.437 119 9 0 622 740 75669250 75669368 1.140000e-38 171.0
32 TraesCS2B01G128500 chr3D 81.203 133 22 3 2098 2229 553310841 553310971 1.170000e-18 104.0
33 TraesCS2B01G128500 chrUn 91.549 71 2 4 448 515 34148358 34148289 7.040000e-16 95.3
34 TraesCS2B01G128500 chrUn 91.549 71 2 4 448 515 282032664 282032595 7.040000e-16 95.3
35 TraesCS2B01G128500 chr7D 83.696 92 15 0 2137 2228 232420716 232420625 1.180000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G128500 chr2B 96089458 96091850 2392 False 4420.0 4420 100.0000 1 2393 1 chr2B.!!$F2 2392
1 TraesCS2B01G128500 chr2B 96241822 96242915 1093 False 498.5 527 86.7645 861 1366 2 chr2B.!!$F7 505
2 TraesCS2B01G128500 chr2B 96110410 96110953 543 False 448.0 448 82.1110 861 1400 1 chr2B.!!$F3 539
3 TraesCS2B01G128500 chr2A 61818009 61820135 2126 False 1244.0 1808 89.9055 1 2393 2 chr2A.!!$F4 2392
4 TraesCS2B01G128500 chr2D 61318842 61320946 2104 False 1208.0 1799 88.9255 8 2393 2 chr2D.!!$F3 2385

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
542 549 0.030369 CCCGGAATTACTCGTCGGAG 59.97 60.0 0.73 0.0 46.13 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2185 2257 0.106419 GTGAAACCAACCCACCAGGA 60.106 55.0 0.0 0.0 39.89 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 2.098770 GGTTCTGGATGCAATCTTCTGC 59.901 50.000 0.00 0.00 44.71 4.26
65 66 2.517402 TTCTGCCGGCAACCGTTT 60.517 55.556 32.09 0.00 46.80 3.60
92 93 6.608808 TCATGATGTCTCCACTCTCTTTCATA 59.391 38.462 0.00 0.00 0.00 2.15
112 113 0.761323 TTGGGTCCAAGTCGTCCTGA 60.761 55.000 0.00 0.00 0.00 3.86
140 141 8.922931 AAGCATACATGTTATGACCATATTCA 57.077 30.769 2.30 0.00 0.00 2.57
167 168 7.521871 AGTGTAAATAAGGAGAGTATACCCG 57.478 40.000 0.00 0.00 0.00 5.28
176 177 3.445857 GAGAGTATACCCGAACTTGTGC 58.554 50.000 0.00 0.00 0.00 4.57
191 192 5.682943 ACTTGTGCGCAAACTTTAGATTA 57.317 34.783 14.00 0.00 33.73 1.75
262 266 7.016153 TGGTATCCAGACATGTTTTCTAAGT 57.984 36.000 0.00 0.00 0.00 2.24
360 364 8.100791 TCTCCTATCATATGTAATTTTTCCCGG 58.899 37.037 1.90 0.00 0.00 5.73
362 366 6.946009 CCTATCATATGTAATTTTTCCCGGGT 59.054 38.462 22.86 1.40 0.00 5.28
380 384 7.814356 TCCCGGGTACTTTAAATTATGGTTAT 58.186 34.615 22.86 0.00 0.00 1.89
440 446 7.770801 ACAAGCATTACTTTCAAAAGTTTCC 57.229 32.000 12.95 1.61 46.52 3.13
462 469 6.548321 TCCTTTTTCATTTCCCTAGCAAGTA 58.452 36.000 0.00 0.00 0.00 2.24
463 470 6.433093 TCCTTTTTCATTTCCCTAGCAAGTAC 59.567 38.462 0.00 0.00 0.00 2.73
464 471 6.434340 CCTTTTTCATTTCCCTAGCAAGTACT 59.566 38.462 0.00 0.00 0.00 2.73
465 472 7.362142 CCTTTTTCATTTCCCTAGCAAGTACTC 60.362 40.741 0.00 0.00 0.00 2.59
466 473 6.374417 TTTCATTTCCCTAGCAAGTACTCT 57.626 37.500 0.00 0.00 0.00 3.24
467 474 5.599999 TCATTTCCCTAGCAAGTACTCTC 57.400 43.478 0.00 0.00 0.00 3.20
468 475 5.273208 TCATTTCCCTAGCAAGTACTCTCT 58.727 41.667 0.00 0.00 0.00 3.10
469 476 5.361285 TCATTTCCCTAGCAAGTACTCTCTC 59.639 44.000 0.00 0.00 0.00 3.20
470 477 3.300239 TCCCTAGCAAGTACTCTCTCC 57.700 52.381 0.00 0.00 0.00 3.71
471 478 1.950909 CCCTAGCAAGTACTCTCTCCG 59.049 57.143 0.00 0.00 0.00 4.63
472 479 2.645802 CCTAGCAAGTACTCTCTCCGT 58.354 52.381 0.00 0.00 0.00 4.69
473 480 3.018149 CCTAGCAAGTACTCTCTCCGTT 58.982 50.000 0.00 0.00 0.00 4.44
474 481 3.065648 CCTAGCAAGTACTCTCTCCGTTC 59.934 52.174 0.00 0.00 0.00 3.95
475 482 1.819903 AGCAAGTACTCTCTCCGTTCC 59.180 52.381 0.00 0.00 0.00 3.62
476 483 1.819903 GCAAGTACTCTCTCCGTTCCT 59.180 52.381 0.00 0.00 0.00 3.36
477 484 3.015327 GCAAGTACTCTCTCCGTTCCTA 58.985 50.000 0.00 0.00 0.00 2.94
478 485 3.442977 GCAAGTACTCTCTCCGTTCCTAA 59.557 47.826 0.00 0.00 0.00 2.69
479 486 4.082354 GCAAGTACTCTCTCCGTTCCTAAA 60.082 45.833 0.00 0.00 0.00 1.85
480 487 5.394333 GCAAGTACTCTCTCCGTTCCTAAAT 60.394 44.000 0.00 0.00 0.00 1.40
481 488 6.183360 GCAAGTACTCTCTCCGTTCCTAAATA 60.183 42.308 0.00 0.00 0.00 1.40
482 489 7.470286 GCAAGTACTCTCTCCGTTCCTAAATAT 60.470 40.741 0.00 0.00 0.00 1.28
483 490 8.414778 CAAGTACTCTCTCCGTTCCTAAATATT 58.585 37.037 0.00 0.00 0.00 1.28
484 491 8.536340 AGTACTCTCTCCGTTCCTAAATATTT 57.464 34.615 5.89 5.89 0.00 1.40
485 492 8.414778 AGTACTCTCTCCGTTCCTAAATATTTG 58.585 37.037 11.05 1.40 0.00 2.32
486 493 7.184067 ACTCTCTCCGTTCCTAAATATTTGT 57.816 36.000 11.05 0.00 0.00 2.83
487 494 7.266400 ACTCTCTCCGTTCCTAAATATTTGTC 58.734 38.462 11.05 0.00 0.00 3.18
488 495 7.124448 ACTCTCTCCGTTCCTAAATATTTGTCT 59.876 37.037 11.05 0.00 0.00 3.41
489 496 7.848128 TCTCTCCGTTCCTAAATATTTGTCTT 58.152 34.615 11.05 0.00 0.00 3.01
490 497 8.319146 TCTCTCCGTTCCTAAATATTTGTCTTT 58.681 33.333 11.05 0.00 0.00 2.52
491 498 8.857694 TCTCCGTTCCTAAATATTTGTCTTTT 57.142 30.769 11.05 0.00 0.00 2.27
492 499 9.292195 TCTCCGTTCCTAAATATTTGTCTTTTT 57.708 29.630 11.05 0.00 0.00 1.94
517 524 7.913674 AGAGATTTCAACAAATGACTACTCC 57.086 36.000 0.00 0.00 37.92 3.85
518 525 6.881602 AGAGATTTCAACAAATGACTACTCCC 59.118 38.462 0.00 0.00 37.92 4.30
519 526 6.784031 AGATTTCAACAAATGACTACTCCCT 58.216 36.000 0.00 0.00 37.92 4.20
520 527 6.881602 AGATTTCAACAAATGACTACTCCCTC 59.118 38.462 0.00 0.00 37.92 4.30
521 528 4.553330 TCAACAAATGACTACTCCCTCC 57.447 45.455 0.00 0.00 31.50 4.30
522 529 3.056107 TCAACAAATGACTACTCCCTCCG 60.056 47.826 0.00 0.00 31.50 4.63
523 530 1.207329 ACAAATGACTACTCCCTCCGC 59.793 52.381 0.00 0.00 0.00 5.54
524 531 0.831307 AAATGACTACTCCCTCCGCC 59.169 55.000 0.00 0.00 0.00 6.13
525 532 1.049289 AATGACTACTCCCTCCGCCC 61.049 60.000 0.00 0.00 0.00 6.13
526 533 3.217743 GACTACTCCCTCCGCCCG 61.218 72.222 0.00 0.00 0.00 6.13
527 534 4.835891 ACTACTCCCTCCGCCCGG 62.836 72.222 0.00 0.00 0.00 5.73
528 535 4.517934 CTACTCCCTCCGCCCGGA 62.518 72.222 0.73 9.31 42.90 5.14
529 536 4.064768 TACTCCCTCCGCCCGGAA 62.065 66.667 0.73 0.00 44.66 4.30
530 537 3.384555 TACTCCCTCCGCCCGGAAT 62.385 63.158 0.73 0.00 44.66 3.01
531 538 2.884179 TACTCCCTCCGCCCGGAATT 62.884 60.000 0.73 0.00 44.66 2.17
532 539 2.041715 TCCCTCCGCCCGGAATTA 60.042 61.111 0.73 0.00 44.66 1.40
533 540 2.110420 CCCTCCGCCCGGAATTAC 59.890 66.667 0.73 0.00 44.66 1.89
534 541 2.440817 CCCTCCGCCCGGAATTACT 61.441 63.158 0.73 0.00 44.66 2.24
535 542 1.069258 CCTCCGCCCGGAATTACTC 59.931 63.158 0.73 0.00 44.66 2.59
536 543 1.299926 CTCCGCCCGGAATTACTCG 60.300 63.158 0.73 0.00 44.66 4.18
537 544 2.012902 CTCCGCCCGGAATTACTCGT 62.013 60.000 0.73 0.00 44.66 4.18
538 545 1.590792 CCGCCCGGAATTACTCGTC 60.591 63.158 0.73 0.00 37.50 4.20
539 546 1.942712 CGCCCGGAATTACTCGTCG 60.943 63.158 0.73 0.00 0.00 5.12
540 547 1.590792 GCCCGGAATTACTCGTCGG 60.591 63.158 0.73 0.00 40.32 4.79
541 548 2.008268 GCCCGGAATTACTCGTCGGA 62.008 60.000 0.73 0.00 42.94 4.55
542 549 0.030369 CCCGGAATTACTCGTCGGAG 59.970 60.000 0.73 0.00 46.13 4.63
543 550 1.019673 CCGGAATTACTCGTCGGAGA 58.980 55.000 0.00 0.00 43.27 3.71
544 551 1.402968 CCGGAATTACTCGTCGGAGAA 59.597 52.381 0.00 0.00 43.27 2.87
545 552 2.159338 CCGGAATTACTCGTCGGAGAAA 60.159 50.000 0.00 0.00 43.27 2.52
546 553 3.490419 CCGGAATTACTCGTCGGAGAAAT 60.490 47.826 0.00 0.00 43.27 2.17
547 554 3.486108 CGGAATTACTCGTCGGAGAAATG 59.514 47.826 0.00 0.00 43.27 2.32
548 555 4.679662 GGAATTACTCGTCGGAGAAATGA 58.320 43.478 0.00 0.00 43.27 2.57
549 556 5.107133 GGAATTACTCGTCGGAGAAATGAA 58.893 41.667 0.00 0.00 43.27 2.57
550 557 5.753921 GGAATTACTCGTCGGAGAAATGAAT 59.246 40.000 0.00 0.00 43.27 2.57
551 558 6.921857 GGAATTACTCGTCGGAGAAATGAATA 59.078 38.462 0.00 0.00 43.27 1.75
552 559 7.437267 GGAATTACTCGTCGGAGAAATGAATAA 59.563 37.037 0.00 0.00 43.27 1.40
553 560 8.712285 AATTACTCGTCGGAGAAATGAATAAA 57.288 30.769 0.00 0.00 43.27 1.40
554 561 8.712285 ATTACTCGTCGGAGAAATGAATAAAA 57.288 30.769 0.00 0.00 43.27 1.52
555 562 8.537049 TTACTCGTCGGAGAAATGAATAAAAA 57.463 30.769 0.00 0.00 43.27 1.94
556 563 7.611213 ACTCGTCGGAGAAATGAATAAAAAT 57.389 32.000 0.00 0.00 43.27 1.82
557 564 7.464358 ACTCGTCGGAGAAATGAATAAAAATG 58.536 34.615 0.00 0.00 43.27 2.32
558 565 6.781138 TCGTCGGAGAAATGAATAAAAATGG 58.219 36.000 0.00 0.00 39.69 3.16
559 566 6.596106 TCGTCGGAGAAATGAATAAAAATGGA 59.404 34.615 0.00 0.00 39.69 3.41
560 567 7.282224 TCGTCGGAGAAATGAATAAAAATGGAT 59.718 33.333 0.00 0.00 39.69 3.41
561 568 7.376866 CGTCGGAGAAATGAATAAAAATGGATG 59.623 37.037 0.00 0.00 39.69 3.51
562 569 8.190784 GTCGGAGAAATGAATAAAAATGGATGT 58.809 33.333 0.00 0.00 39.69 3.06
563 570 9.402320 TCGGAGAAATGAATAAAAATGGATGTA 57.598 29.630 0.00 0.00 0.00 2.29
599 606 8.423906 AAATACGTCTAGATACATCCATTCCT 57.576 34.615 0.00 0.00 0.00 3.36
600 607 5.968528 ACGTCTAGATACATCCATTCCTC 57.031 43.478 0.00 0.00 0.00 3.71
601 608 4.767928 ACGTCTAGATACATCCATTCCTCC 59.232 45.833 0.00 0.00 0.00 4.30
602 609 4.142578 CGTCTAGATACATCCATTCCTCCG 60.143 50.000 0.00 0.00 0.00 4.63
603 610 5.010933 GTCTAGATACATCCATTCCTCCGA 58.989 45.833 0.00 0.00 0.00 4.55
604 611 5.010933 TCTAGATACATCCATTCCTCCGAC 58.989 45.833 0.00 0.00 0.00 4.79
605 612 3.576861 AGATACATCCATTCCTCCGACA 58.423 45.455 0.00 0.00 0.00 4.35
606 613 3.967326 AGATACATCCATTCCTCCGACAA 59.033 43.478 0.00 0.00 0.00 3.18
607 614 2.698855 ACATCCATTCCTCCGACAAG 57.301 50.000 0.00 0.00 0.00 3.16
608 615 1.909302 ACATCCATTCCTCCGACAAGT 59.091 47.619 0.00 0.00 0.00 3.16
609 616 3.104512 ACATCCATTCCTCCGACAAGTA 58.895 45.455 0.00 0.00 0.00 2.24
610 617 3.711704 ACATCCATTCCTCCGACAAGTAT 59.288 43.478 0.00 0.00 0.00 2.12
611 618 4.164221 ACATCCATTCCTCCGACAAGTATT 59.836 41.667 0.00 0.00 0.00 1.89
612 619 4.837093 TCCATTCCTCCGACAAGTATTT 57.163 40.909 0.00 0.00 0.00 1.40
613 620 4.766375 TCCATTCCTCCGACAAGTATTTC 58.234 43.478 0.00 0.00 0.00 2.17
614 621 3.877508 CCATTCCTCCGACAAGTATTTCC 59.122 47.826 0.00 0.00 0.00 3.13
615 622 2.953466 TCCTCCGACAAGTATTTCCG 57.047 50.000 0.00 0.00 0.00 4.30
616 623 1.479323 TCCTCCGACAAGTATTTCCGG 59.521 52.381 0.00 0.00 41.36 5.14
617 624 1.479323 CCTCCGACAAGTATTTCCGGA 59.521 52.381 0.00 0.00 45.74 5.14
618 625 2.537401 CTCCGACAAGTATTTCCGGAC 58.463 52.381 1.83 0.00 43.47 4.79
619 626 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
620 627 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
621 628 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
622 629 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
623 630 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
624 631 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
625 632 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
626 633 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
627 634 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
628 635 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
629 636 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
630 637 2.044650 CCGGACGGAGGGAGTACA 60.045 66.667 4.40 0.00 37.50 2.90
631 638 1.455217 CCGGACGGAGGGAGTACAT 60.455 63.158 4.40 0.00 37.50 2.29
632 639 0.179009 CCGGACGGAGGGAGTACATA 60.179 60.000 4.40 0.00 37.50 2.29
633 640 0.950116 CGGACGGAGGGAGTACATAC 59.050 60.000 0.00 0.00 0.00 2.39
634 641 1.748244 CGGACGGAGGGAGTACATACA 60.748 57.143 0.00 0.00 0.00 2.29
635 642 2.595238 GGACGGAGGGAGTACATACAT 58.405 52.381 0.00 0.00 0.00 2.29
636 643 3.759581 GGACGGAGGGAGTACATACATA 58.240 50.000 0.00 0.00 0.00 2.29
637 644 3.757493 GGACGGAGGGAGTACATACATAG 59.243 52.174 0.00 0.00 0.00 2.23
638 645 3.155501 ACGGAGGGAGTACATACATAGC 58.844 50.000 0.00 0.00 0.00 2.97
639 646 3.154710 CGGAGGGAGTACATACATAGCA 58.845 50.000 0.00 0.00 0.00 3.49
640 647 3.572682 CGGAGGGAGTACATACATAGCAA 59.427 47.826 0.00 0.00 0.00 3.91
641 648 4.038763 CGGAGGGAGTACATACATAGCAAA 59.961 45.833 0.00 0.00 0.00 3.68
642 649 5.452776 CGGAGGGAGTACATACATAGCAAAA 60.453 44.000 0.00 0.00 0.00 2.44
643 650 6.534634 GGAGGGAGTACATACATAGCAAAAT 58.465 40.000 0.00 0.00 0.00 1.82
644 651 6.428159 GGAGGGAGTACATACATAGCAAAATG 59.572 42.308 0.00 0.00 0.00 2.32
645 652 7.136822 AGGGAGTACATACATAGCAAAATGA 57.863 36.000 0.00 0.00 0.00 2.57
646 653 7.220030 AGGGAGTACATACATAGCAAAATGAG 58.780 38.462 0.00 0.00 0.00 2.90
647 654 6.992715 GGGAGTACATACATAGCAAAATGAGT 59.007 38.462 0.00 0.00 0.00 3.41
648 655 7.041780 GGGAGTACATACATAGCAAAATGAGTG 60.042 40.741 0.00 2.62 0.00 3.51
649 656 7.710907 GGAGTACATACATAGCAAAATGAGTGA 59.289 37.037 0.00 0.00 0.00 3.41
650 657 9.098355 GAGTACATACATAGCAAAATGAGTGAA 57.902 33.333 0.00 0.00 0.00 3.18
651 658 9.618890 AGTACATACATAGCAAAATGAGTGAAT 57.381 29.630 0.00 0.00 0.00 2.57
652 659 9.869844 GTACATACATAGCAAAATGAGTGAATC 57.130 33.333 1.26 0.00 0.00 2.52
653 660 7.934457 ACATACATAGCAAAATGAGTGAATCC 58.066 34.615 1.26 0.00 0.00 3.01
654 661 7.557358 ACATACATAGCAAAATGAGTGAATCCA 59.443 33.333 1.26 0.00 0.00 3.41
655 662 6.199937 ACATAGCAAAATGAGTGAATCCAC 57.800 37.500 1.26 0.00 43.50 4.02
656 663 5.711506 ACATAGCAAAATGAGTGAATCCACA 59.288 36.000 0.00 0.00 45.54 4.17
657 664 4.510038 AGCAAAATGAGTGAATCCACAC 57.490 40.909 0.00 0.00 45.54 3.82
670 677 8.723942 AGTGAATCCACACTCTAAAATATGTC 57.276 34.615 0.00 0.00 46.36 3.06
671 678 8.543774 AGTGAATCCACACTCTAAAATATGTCT 58.456 33.333 0.00 0.00 46.36 3.41
672 679 9.817809 GTGAATCCACACTCTAAAATATGTCTA 57.182 33.333 0.00 0.00 42.72 2.59
673 680 9.817809 TGAATCCACACTCTAAAATATGTCTAC 57.182 33.333 0.00 0.00 0.00 2.59
674 681 9.817809 GAATCCACACTCTAAAATATGTCTACA 57.182 33.333 0.00 0.00 0.00 2.74
676 683 9.770097 ATCCACACTCTAAAATATGTCTACATG 57.230 33.333 5.85 0.00 37.15 3.21
677 684 7.710907 TCCACACTCTAAAATATGTCTACATGC 59.289 37.037 5.85 0.00 37.15 4.06
678 685 7.495606 CCACACTCTAAAATATGTCTACATGCA 59.504 37.037 5.85 0.00 37.15 3.96
679 686 9.049523 CACACTCTAAAATATGTCTACATGCAT 57.950 33.333 5.85 0.00 37.15 3.96
680 687 9.618890 ACACTCTAAAATATGTCTACATGCATT 57.381 29.630 0.00 0.00 37.15 3.56
689 696 9.955208 AATATGTCTACATGCATTTGTATGTTG 57.045 29.630 17.42 15.47 46.66 3.33
690 697 6.816134 TGTCTACATGCATTTGTATGTTGT 57.184 33.333 17.42 0.00 46.66 3.32
691 698 6.610456 TGTCTACATGCATTTGTATGTTGTG 58.390 36.000 17.42 9.86 46.66 3.33
692 699 6.206438 TGTCTACATGCATTTGTATGTTGTGT 59.794 34.615 17.42 0.00 46.66 3.72
693 700 6.742718 GTCTACATGCATTTGTATGTTGTGTC 59.257 38.462 17.42 8.75 46.66 3.67
694 701 4.808558 ACATGCATTTGTATGTTGTGTCC 58.191 39.130 8.26 0.00 46.66 4.02
695 702 4.280425 ACATGCATTTGTATGTTGTGTCCA 59.720 37.500 8.26 0.00 46.66 4.02
696 703 5.047164 ACATGCATTTGTATGTTGTGTCCAT 60.047 36.000 8.26 0.00 46.66 3.41
697 704 5.465532 TGCATTTGTATGTTGTGTCCATT 57.534 34.783 0.00 0.00 34.12 3.16
698 705 5.851720 TGCATTTGTATGTTGTGTCCATTT 58.148 33.333 0.00 0.00 34.12 2.32
699 706 6.986250 TGCATTTGTATGTTGTGTCCATTTA 58.014 32.000 0.00 0.00 34.12 1.40
700 707 7.436933 TGCATTTGTATGTTGTGTCCATTTAA 58.563 30.769 0.00 0.00 34.12 1.52
701 708 7.928167 TGCATTTGTATGTTGTGTCCATTTAAA 59.072 29.630 0.00 0.00 34.12 1.52
702 709 8.768955 GCATTTGTATGTTGTGTCCATTTAAAA 58.231 29.630 0.00 0.00 34.12 1.52
705 712 7.881643 TGTATGTTGTGTCCATTTAAAATGC 57.118 32.000 0.00 0.00 0.00 3.56
706 713 6.870965 TGTATGTTGTGTCCATTTAAAATGCC 59.129 34.615 0.00 0.00 0.00 4.40
707 714 5.543507 TGTTGTGTCCATTTAAAATGCCT 57.456 34.783 0.00 0.00 0.00 4.75
708 715 6.656632 TGTTGTGTCCATTTAAAATGCCTA 57.343 33.333 0.00 0.00 0.00 3.93
709 716 6.686630 TGTTGTGTCCATTTAAAATGCCTAG 58.313 36.000 0.00 0.00 0.00 3.02
710 717 6.491745 TGTTGTGTCCATTTAAAATGCCTAGA 59.508 34.615 0.00 0.00 0.00 2.43
711 718 7.014711 TGTTGTGTCCATTTAAAATGCCTAGAA 59.985 33.333 0.00 0.00 0.00 2.10
712 719 7.531857 TGTGTCCATTTAAAATGCCTAGAAA 57.468 32.000 0.00 0.00 0.00 2.52
713 720 7.601856 TGTGTCCATTTAAAATGCCTAGAAAG 58.398 34.615 0.00 0.00 0.00 2.62
714 721 7.450014 TGTGTCCATTTAAAATGCCTAGAAAGA 59.550 33.333 0.00 0.00 0.00 2.52
715 722 7.755373 GTGTCCATTTAAAATGCCTAGAAAGAC 59.245 37.037 0.00 0.00 0.00 3.01
716 723 7.450014 TGTCCATTTAAAATGCCTAGAAAGACA 59.550 33.333 0.00 0.00 0.00 3.41
717 724 8.303876 GTCCATTTAAAATGCCTAGAAAGACAA 58.696 33.333 0.00 0.00 0.00 3.18
718 725 8.865090 TCCATTTAAAATGCCTAGAAAGACAAA 58.135 29.630 0.00 0.00 0.00 2.83
719 726 9.657419 CCATTTAAAATGCCTAGAAAGACAAAT 57.343 29.630 0.00 0.00 0.00 2.32
725 732 9.657419 AAAATGCCTAGAAAGACAAATATTTGG 57.343 29.630 27.43 12.85 42.34 3.28
726 733 6.773976 TGCCTAGAAAGACAAATATTTGGG 57.226 37.500 27.43 18.18 42.34 4.12
727 734 6.489603 TGCCTAGAAAGACAAATATTTGGGA 58.510 36.000 27.43 8.88 42.34 4.37
728 735 6.951198 TGCCTAGAAAGACAAATATTTGGGAA 59.049 34.615 27.43 11.57 42.34 3.97
729 736 7.619302 TGCCTAGAAAGACAAATATTTGGGAAT 59.381 33.333 27.43 13.80 42.34 3.01
730 737 7.922811 GCCTAGAAAGACAAATATTTGGGAATG 59.077 37.037 27.43 7.03 42.34 2.67
731 738 8.416329 CCTAGAAAGACAAATATTTGGGAATGG 58.584 37.037 27.43 16.00 42.34 3.16
732 739 9.189156 CTAGAAAGACAAATATTTGGGAATGGA 57.811 33.333 27.43 10.48 42.34 3.41
733 740 8.071177 AGAAAGACAAATATTTGGGAATGGAG 57.929 34.615 27.43 4.34 42.34 3.86
734 741 6.796785 AAGACAAATATTTGGGAATGGAGG 57.203 37.500 27.43 3.68 42.34 4.30
735 742 5.211201 AGACAAATATTTGGGAATGGAGGG 58.789 41.667 27.43 3.22 42.34 4.30
736 743 5.043432 AGACAAATATTTGGGAATGGAGGGA 60.043 40.000 27.43 0.00 42.34 4.20
737 744 5.211201 ACAAATATTTGGGAATGGAGGGAG 58.789 41.667 27.43 2.64 42.34 4.30
738 745 5.211201 CAAATATTTGGGAATGGAGGGAGT 58.789 41.667 18.72 0.00 34.59 3.85
739 746 6.068498 ACAAATATTTGGGAATGGAGGGAGTA 60.068 38.462 27.43 0.00 42.34 2.59
797 804 2.610727 GGAAGGGCAGATACAGTATCGC 60.611 54.545 20.34 20.34 40.12 4.58
800 807 1.605712 GGGCAGATACAGTATCGCCAC 60.606 57.143 33.58 25.67 46.71 5.01
812 825 2.586258 ATCGCCACTGATGTACTCAC 57.414 50.000 0.00 0.00 0.00 3.51
814 827 1.472878 TCGCCACTGATGTACTCACTC 59.527 52.381 0.00 0.00 0.00 3.51
815 828 1.795525 CGCCACTGATGTACTCACTCG 60.796 57.143 0.00 0.00 0.00 4.18
892 905 8.168681 CTTTTGAGCAAAAAGTCGAGTTTAAA 57.831 30.769 18.22 10.97 46.54 1.52
931 944 7.145932 ACATGTCAAGTTACCAGCTTATTTC 57.854 36.000 0.00 0.00 0.00 2.17
941 954 4.284178 ACCAGCTTATTTCGTAGGGTAGA 58.716 43.478 0.00 0.00 0.00 2.59
1017 1030 0.252479 CCATGAGAGCCAGCACTTCT 59.748 55.000 0.00 0.00 0.00 2.85
1089 1102 2.047274 CCGTTCATGGCCGTCACT 60.047 61.111 0.00 0.00 0.00 3.41
1092 1105 1.354337 CGTTCATGGCCGTCACTGAG 61.354 60.000 0.00 0.00 0.00 3.35
1358 1386 7.834068 TGTATATTCTCTCTGTGTGCTTTTC 57.166 36.000 0.00 0.00 0.00 2.29
1361 1415 2.473816 TCTCTCTGTGTGCTTTTCGTG 58.526 47.619 0.00 0.00 0.00 4.35
1368 1422 2.742589 TGTGTGCTTTTCGTGTTGTGTA 59.257 40.909 0.00 0.00 0.00 2.90
1390 1444 6.662234 TGTATACCAGCGCTTTATATAGGTCT 59.338 38.462 15.75 9.71 0.00 3.85
1406 1463 2.092323 GGTCTAAAGTTGTGGGGATGC 58.908 52.381 0.00 0.00 0.00 3.91
1409 1466 3.440522 GTCTAAAGTTGTGGGGATGCTTC 59.559 47.826 0.00 0.00 0.00 3.86
1423 1480 4.022503 GGGATGCTTCCTTGAATATTCTGC 60.023 45.833 17.48 10.67 42.20 4.26
1424 1481 4.581824 GGATGCTTCCTTGAATATTCTGCA 59.418 41.667 16.24 14.88 39.14 4.41
1433 1490 5.220931 CCTTGAATATTCTGCACTGTTAGGC 60.221 44.000 16.24 0.00 0.00 3.93
1445 1502 3.165058 CTGTTAGGCAGCGAGTCATAA 57.835 47.619 0.00 0.00 38.52 1.90
1453 1511 2.735663 GCAGCGAGTCATAATGATGAGG 59.264 50.000 0.00 0.00 42.87 3.86
1457 1515 3.738282 GCGAGTCATAATGATGAGGTGTC 59.262 47.826 0.00 0.00 42.87 3.67
1477 1535 6.369065 GGTGTCTCTTGTTAACAACCAGATAG 59.631 42.308 17.01 5.94 33.33 2.08
1520 1579 7.850982 CGCTAGAATAATACACATGTTTTGGTC 59.149 37.037 0.00 0.00 0.00 4.02
1532 1591 8.825745 ACACATGTTTTGGTCAATTTAATCAAC 58.174 29.630 0.00 0.00 0.00 3.18
1590 1650 1.715785 TATGATGGTGATCTGGGCGA 58.284 50.000 0.00 0.00 0.00 5.54
1597 1657 4.908601 TGGTGATCTGGGCGATATTAAT 57.091 40.909 0.00 0.00 30.84 1.40
1670 1732 4.036380 AGTTTTCAACCCGACTTTGACATC 59.964 41.667 0.00 0.00 32.65 3.06
1676 1738 4.819105 ACCCGACTTTGACATCAATAGA 57.181 40.909 0.00 0.00 35.55 1.98
1685 1747 6.491403 ACTTTGACATCAATAGAACCAGCTTT 59.509 34.615 0.00 0.00 35.55 3.51
1712 1774 3.513515 ACATCACCACCTTCTCTCTTCTC 59.486 47.826 0.00 0.00 0.00 2.87
1724 1786 7.446013 ACCTTCTCTCTTCTCTATAATACACCG 59.554 40.741 0.00 0.00 0.00 4.94
1725 1787 7.094549 CCTTCTCTCTTCTCTATAATACACCGG 60.095 44.444 0.00 0.00 0.00 5.28
1728 1790 5.706369 TCTCTTCTCTATAATACACCGGCTC 59.294 44.000 0.00 0.00 0.00 4.70
1735 1797 8.644216 TCTCTATAATACACCGGCTCAATTTAA 58.356 33.333 0.00 0.00 0.00 1.52
1750 1812 6.090763 GCTCAATTTAAATTTTGGTCCGGAAG 59.909 38.462 5.23 0.00 0.00 3.46
1752 1814 8.179509 TCAATTTAAATTTTGGTCCGGAAGTA 57.820 30.769 5.23 0.00 0.00 2.24
1766 1828 5.930569 GTCCGGAAGTAACTTGTTAAGATGT 59.069 40.000 5.23 0.00 0.00 3.06
1844 1906 9.449719 TTTATTAAACTGGATGGTTTCTCTCTC 57.550 33.333 0.00 0.00 39.66 3.20
1889 1951 8.463607 CGACAAACCCATTTATTAAGTATTGGT 58.536 33.333 0.00 0.00 0.00 3.67
1895 1957 9.541884 ACCCATTTATTAAGTATTGGTTTGAGT 57.458 29.630 0.00 0.00 0.00 3.41
1896 1958 9.801873 CCCATTTATTAAGTATTGGTTTGAGTG 57.198 33.333 0.00 0.00 0.00 3.51
1900 1962 9.515226 TTTATTAAGTATTGGTTTGAGTGAGCT 57.485 29.630 0.00 0.00 0.00 4.09
1901 1963 9.515226 TTATTAAGTATTGGTTTGAGTGAGCTT 57.485 29.630 0.00 0.00 0.00 3.74
1903 1965 8.911918 TTAAGTATTGGTTTGAGTGAGCTTAA 57.088 30.769 0.00 0.00 0.00 1.85
1904 1966 9.515226 TTAAGTATTGGTTTGAGTGAGCTTAAT 57.485 29.630 0.00 0.00 0.00 1.40
1915 1977 5.248477 TGAGTGAGCTTAATTAGGGTTGACT 59.752 40.000 10.34 10.34 0.00 3.41
2010 2072 0.174845 TCGTCCTTCATGGGCTTACG 59.825 55.000 0.00 0.00 38.58 3.18
2018 2080 3.316071 TCATGGGCTTACGTCGTTTTA 57.684 42.857 1.78 0.00 0.00 1.52
2022 2084 6.050432 TCATGGGCTTACGTCGTTTTATATT 58.950 36.000 1.78 0.00 0.00 1.28
2080 2143 7.672983 TTTAACATGAGATTGAGGAAGTCAC 57.327 36.000 0.00 0.00 33.71 3.67
2089 2152 0.667792 GAGGAAGTCACCACAGACGC 60.668 60.000 0.00 0.00 43.24 5.19
2091 2154 2.022129 GAAGTCACCACAGACGCCG 61.022 63.158 0.00 0.00 43.24 6.46
2092 2155 2.416244 GAAGTCACCACAGACGCCGA 62.416 60.000 0.00 0.00 43.24 5.54
2093 2156 1.816863 AAGTCACCACAGACGCCGAT 61.817 55.000 0.00 0.00 43.24 4.18
2098 2170 1.327690 ACCACAGACGCCGATGGTAT 61.328 55.000 0.00 0.00 43.72 2.73
2104 2176 2.552743 CAGACGCCGATGGTATCTCTTA 59.447 50.000 0.00 0.00 0.00 2.10
2110 2182 3.118956 GCCGATGGTATCTCTTATCCCAG 60.119 52.174 0.00 0.00 0.00 4.45
2121 2193 2.766263 TCTTATCCCAGTGAGCGAACAT 59.234 45.455 0.00 0.00 0.00 2.71
2147 2219 5.821204 CCGGAAAGGCTTAAATGAATACAG 58.179 41.667 0.00 0.00 0.00 2.74
2159 2231 9.559958 CTTAAATGAATACAGAAAAATGCGAGT 57.440 29.630 0.00 0.00 0.00 4.18
2201 2273 1.219213 TGAATCCTGGTGGGTTGGTTT 59.781 47.619 0.00 0.00 36.67 3.27
2228 2300 3.274288 CAAGGAACCTAACCATCTGAGC 58.726 50.000 0.00 0.00 0.00 4.26
2229 2301 1.840635 AGGAACCTAACCATCTGAGCC 59.159 52.381 0.00 0.00 0.00 4.70
2232 2304 1.958288 ACCTAACCATCTGAGCCACT 58.042 50.000 0.00 0.00 0.00 4.00
2234 2306 1.139853 CCTAACCATCTGAGCCACTCC 59.860 57.143 0.00 0.00 0.00 3.85
2349 2425 6.728411 CCCCCTAGGTGAAGTTTACTATTTT 58.272 40.000 8.29 0.00 0.00 1.82
2386 2462 8.677148 AATAACTAGCTAAATACCCATGTGTG 57.323 34.615 0.00 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.464373 AGTTGCCCATGCTCATACGG 60.464 55.000 0.00 0.00 38.71 4.02
65 66 6.608808 TGAAAGAGAGTGGAGACATCATGATA 59.391 38.462 8.15 0.00 46.14 2.15
92 93 0.324943 CAGGACGACTTGGACCCAAT 59.675 55.000 1.46 0.00 35.20 3.16
144 145 7.516198 TCGGGTATACTCTCCTTATTTACAC 57.484 40.000 0.31 0.00 0.00 2.90
151 152 5.359009 CACAAGTTCGGGTATACTCTCCTTA 59.641 44.000 0.31 0.00 0.00 2.69
167 168 3.947626 TCTAAAGTTTGCGCACAAGTTC 58.052 40.909 11.12 0.00 37.04 3.01
176 177 7.746475 CCTTCAGTTCTTAATCTAAAGTTTGCG 59.254 37.037 0.00 0.00 0.00 4.85
287 291 2.438021 GCAGTCATGGTCTTGGGGTATA 59.562 50.000 0.00 0.00 0.00 1.47
380 384 9.612066 CAGTCTCTGCATATAGATGATACTAGA 57.388 37.037 0.39 0.00 34.73 2.43
394 400 7.839680 TGTATTATCTTCCAGTCTCTGCATA 57.160 36.000 0.00 0.00 0.00 3.14
440 446 7.391833 AGAGTACTTGCTAGGGAAATGAAAAAG 59.608 37.037 0.00 0.00 0.00 2.27
462 469 7.124448 AGACAAATATTTAGGAACGGAGAGAGT 59.876 37.037 0.00 0.00 0.00 3.24
463 470 7.493367 AGACAAATATTTAGGAACGGAGAGAG 58.507 38.462 0.00 0.00 0.00 3.20
464 471 7.419711 AGACAAATATTTAGGAACGGAGAGA 57.580 36.000 0.00 0.00 0.00 3.10
465 472 8.494016 AAAGACAAATATTTAGGAACGGAGAG 57.506 34.615 0.00 0.00 0.00 3.20
466 473 8.857694 AAAAGACAAATATTTAGGAACGGAGA 57.142 30.769 0.00 0.00 0.00 3.71
491 498 9.436957 GGAGTAGTCATTTGTTGAAATCTCTAA 57.563 33.333 0.00 0.00 35.70 2.10
492 499 8.041323 GGGAGTAGTCATTTGTTGAAATCTCTA 58.959 37.037 0.00 0.00 35.70 2.43
493 500 6.881602 GGGAGTAGTCATTTGTTGAAATCTCT 59.118 38.462 0.00 0.00 35.70 3.10
494 501 6.881602 AGGGAGTAGTCATTTGTTGAAATCTC 59.118 38.462 0.00 0.00 35.70 2.75
495 502 6.784031 AGGGAGTAGTCATTTGTTGAAATCT 58.216 36.000 0.00 0.00 35.70 2.40
496 503 6.094186 GGAGGGAGTAGTCATTTGTTGAAATC 59.906 42.308 0.00 0.00 35.70 2.17
497 504 5.946377 GGAGGGAGTAGTCATTTGTTGAAAT 59.054 40.000 0.00 0.00 35.70 2.17
498 505 5.313712 GGAGGGAGTAGTCATTTGTTGAAA 58.686 41.667 0.00 0.00 35.70 2.69
499 506 4.562757 CGGAGGGAGTAGTCATTTGTTGAA 60.563 45.833 0.00 0.00 35.70 2.69
500 507 3.056107 CGGAGGGAGTAGTCATTTGTTGA 60.056 47.826 0.00 0.00 0.00 3.18
501 508 3.262420 CGGAGGGAGTAGTCATTTGTTG 58.738 50.000 0.00 0.00 0.00 3.33
502 509 2.354805 GCGGAGGGAGTAGTCATTTGTT 60.355 50.000 0.00 0.00 0.00 2.83
503 510 1.207329 GCGGAGGGAGTAGTCATTTGT 59.793 52.381 0.00 0.00 0.00 2.83
504 511 1.473434 GGCGGAGGGAGTAGTCATTTG 60.473 57.143 0.00 0.00 0.00 2.32
505 512 0.831307 GGCGGAGGGAGTAGTCATTT 59.169 55.000 0.00 0.00 0.00 2.32
506 513 1.049289 GGGCGGAGGGAGTAGTCATT 61.049 60.000 0.00 0.00 0.00 2.57
507 514 1.457831 GGGCGGAGGGAGTAGTCAT 60.458 63.158 0.00 0.00 0.00 3.06
508 515 2.043248 GGGCGGAGGGAGTAGTCA 60.043 66.667 0.00 0.00 0.00 3.41
509 516 3.217743 CGGGCGGAGGGAGTAGTC 61.218 72.222 0.00 0.00 0.00 2.59
510 517 4.835891 CCGGGCGGAGGGAGTAGT 62.836 72.222 0.00 0.00 37.50 2.73
511 518 4.517934 TCCGGGCGGAGGGAGTAG 62.518 72.222 0.00 0.00 39.76 2.57
512 519 2.884179 AATTCCGGGCGGAGGGAGTA 62.884 60.000 0.00 0.00 46.06 2.59
513 520 2.884179 TAATTCCGGGCGGAGGGAGT 62.884 60.000 0.00 0.00 46.06 3.85
514 521 2.138179 TAATTCCGGGCGGAGGGAG 61.138 63.158 0.00 0.00 46.06 4.30
515 522 2.041715 TAATTCCGGGCGGAGGGA 60.042 61.111 0.00 0.00 46.06 4.20
516 523 2.110420 GTAATTCCGGGCGGAGGG 59.890 66.667 0.00 0.00 46.06 4.30
517 524 1.069258 GAGTAATTCCGGGCGGAGG 59.931 63.158 0.00 0.00 46.06 4.30
518 525 1.299926 CGAGTAATTCCGGGCGGAG 60.300 63.158 0.00 0.00 46.06 4.63
519 526 2.008268 GACGAGTAATTCCGGGCGGA 62.008 60.000 0.00 0.00 43.52 5.54
520 527 1.590792 GACGAGTAATTCCGGGCGG 60.591 63.158 0.00 0.00 0.00 6.13
521 528 1.942712 CGACGAGTAATTCCGGGCG 60.943 63.158 0.00 0.00 0.00 6.13
522 529 1.590792 CCGACGAGTAATTCCGGGC 60.591 63.158 0.00 0.00 36.81 6.13
523 530 0.030369 CTCCGACGAGTAATTCCGGG 59.970 60.000 0.00 0.00 40.48 5.73
524 531 1.019673 TCTCCGACGAGTAATTCCGG 58.980 55.000 0.00 0.00 41.36 5.14
525 532 2.838386 TTCTCCGACGAGTAATTCCG 57.162 50.000 0.00 0.00 37.40 4.30
526 533 4.679662 TCATTTCTCCGACGAGTAATTCC 58.320 43.478 0.00 0.00 34.81 3.01
527 534 6.830114 ATTCATTTCTCCGACGAGTAATTC 57.170 37.500 0.00 0.00 34.81 2.17
528 535 8.712285 TTTATTCATTTCTCCGACGAGTAATT 57.288 30.769 0.00 0.00 34.81 1.40
529 536 8.712285 TTTTATTCATTTCTCCGACGAGTAAT 57.288 30.769 0.00 0.00 36.77 1.89
530 537 8.537049 TTTTTATTCATTTCTCCGACGAGTAA 57.463 30.769 0.00 0.00 37.40 2.24
531 538 8.600625 CATTTTTATTCATTTCTCCGACGAGTA 58.399 33.333 0.00 0.00 37.40 2.59
532 539 7.414098 CCATTTTTATTCATTTCTCCGACGAGT 60.414 37.037 0.00 0.00 37.40 4.18
533 540 6.907212 CCATTTTTATTCATTTCTCCGACGAG 59.093 38.462 0.00 0.00 37.48 4.18
534 541 6.596106 TCCATTTTTATTCATTTCTCCGACGA 59.404 34.615 0.00 0.00 0.00 4.20
535 542 6.781138 TCCATTTTTATTCATTTCTCCGACG 58.219 36.000 0.00 0.00 0.00 5.12
536 543 8.190784 ACATCCATTTTTATTCATTTCTCCGAC 58.809 33.333 0.00 0.00 0.00 4.79
537 544 8.292444 ACATCCATTTTTATTCATTTCTCCGA 57.708 30.769 0.00 0.00 0.00 4.55
573 580 8.871125 AGGAATGGATGTATCTAGACGTATTTT 58.129 33.333 0.00 0.00 0.00 1.82
574 581 8.423906 AGGAATGGATGTATCTAGACGTATTT 57.576 34.615 0.00 0.00 0.00 1.40
575 582 7.122948 GGAGGAATGGATGTATCTAGACGTATT 59.877 40.741 0.00 0.00 0.00 1.89
576 583 6.603997 GGAGGAATGGATGTATCTAGACGTAT 59.396 42.308 0.00 0.00 0.00 3.06
577 584 5.944599 GGAGGAATGGATGTATCTAGACGTA 59.055 44.000 0.00 0.00 0.00 3.57
578 585 4.767928 GGAGGAATGGATGTATCTAGACGT 59.232 45.833 0.00 0.00 0.00 4.34
579 586 4.142578 CGGAGGAATGGATGTATCTAGACG 60.143 50.000 0.00 0.00 0.00 4.18
580 587 5.010933 TCGGAGGAATGGATGTATCTAGAC 58.989 45.833 0.00 0.00 0.00 2.59
581 588 5.010933 GTCGGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 0.00 2.43
582 589 4.767409 TGTCGGAGGAATGGATGTATCTAG 59.233 45.833 0.00 0.00 0.00 2.43
583 590 4.736473 TGTCGGAGGAATGGATGTATCTA 58.264 43.478 0.00 0.00 0.00 1.98
584 591 3.576861 TGTCGGAGGAATGGATGTATCT 58.423 45.455 0.00 0.00 0.00 1.98
585 592 4.202264 ACTTGTCGGAGGAATGGATGTATC 60.202 45.833 0.00 0.00 0.00 2.24
586 593 3.711704 ACTTGTCGGAGGAATGGATGTAT 59.288 43.478 0.00 0.00 0.00 2.29
587 594 3.104512 ACTTGTCGGAGGAATGGATGTA 58.895 45.455 0.00 0.00 0.00 2.29
588 595 1.909302 ACTTGTCGGAGGAATGGATGT 59.091 47.619 0.00 0.00 0.00 3.06
589 596 2.698855 ACTTGTCGGAGGAATGGATG 57.301 50.000 0.00 0.00 0.00 3.51
590 597 5.368989 GAAATACTTGTCGGAGGAATGGAT 58.631 41.667 0.00 0.00 0.00 3.41
591 598 4.383770 GGAAATACTTGTCGGAGGAATGGA 60.384 45.833 0.00 0.00 0.00 3.41
592 599 3.877508 GGAAATACTTGTCGGAGGAATGG 59.122 47.826 0.00 0.00 0.00 3.16
593 600 3.555956 CGGAAATACTTGTCGGAGGAATG 59.444 47.826 0.00 0.00 0.00 2.67
594 601 3.431766 CCGGAAATACTTGTCGGAGGAAT 60.432 47.826 0.00 0.00 42.94 3.01
595 602 2.093869 CCGGAAATACTTGTCGGAGGAA 60.094 50.000 0.00 0.00 42.94 3.36
596 603 1.479323 CCGGAAATACTTGTCGGAGGA 59.521 52.381 0.00 0.00 42.94 3.71
597 604 1.479323 TCCGGAAATACTTGTCGGAGG 59.521 52.381 0.00 0.00 43.84 4.30
598 605 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
599 606 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
600 607 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
601 608 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
602 609 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
603 610 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
604 611 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
605 612 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
606 613 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
607 614 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
608 615 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
609 616 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
610 617 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
611 618 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
612 619 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
613 620 0.179009 TATGTACTCCCTCCGTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
614 621 0.950116 GTATGTACTCCCTCCGTCCG 59.050 60.000 0.00 0.00 0.00 4.79
615 622 2.062971 TGTATGTACTCCCTCCGTCC 57.937 55.000 0.00 0.00 0.00 4.79
616 623 3.190953 GCTATGTATGTACTCCCTCCGTC 59.809 52.174 0.00 0.00 0.00 4.79
617 624 3.155501 GCTATGTATGTACTCCCTCCGT 58.844 50.000 0.00 0.00 0.00 4.69
618 625 3.154710 TGCTATGTATGTACTCCCTCCG 58.845 50.000 0.00 0.00 0.00 4.63
619 626 5.546621 TTTGCTATGTATGTACTCCCTCC 57.453 43.478 0.00 0.00 0.00 4.30
620 627 7.217200 TCATTTTGCTATGTATGTACTCCCTC 58.783 38.462 0.00 0.00 0.00 4.30
621 628 7.136822 TCATTTTGCTATGTATGTACTCCCT 57.863 36.000 0.00 0.00 0.00 4.20
622 629 6.992715 ACTCATTTTGCTATGTATGTACTCCC 59.007 38.462 0.00 0.00 0.00 4.30
623 630 7.710907 TCACTCATTTTGCTATGTATGTACTCC 59.289 37.037 0.00 0.00 0.00 3.85
624 631 8.648557 TCACTCATTTTGCTATGTATGTACTC 57.351 34.615 0.00 0.00 0.00 2.59
625 632 9.618890 ATTCACTCATTTTGCTATGTATGTACT 57.381 29.630 0.00 0.00 0.00 2.73
626 633 9.869844 GATTCACTCATTTTGCTATGTATGTAC 57.130 33.333 0.00 0.00 0.00 2.90
627 634 9.056005 GGATTCACTCATTTTGCTATGTATGTA 57.944 33.333 0.00 0.00 0.00 2.29
628 635 7.557358 TGGATTCACTCATTTTGCTATGTATGT 59.443 33.333 0.00 0.00 0.00 2.29
629 636 7.859377 GTGGATTCACTCATTTTGCTATGTATG 59.141 37.037 0.00 0.00 40.58 2.39
630 637 7.557358 TGTGGATTCACTCATTTTGCTATGTAT 59.443 33.333 5.55 0.00 43.94 2.29
631 638 6.883756 TGTGGATTCACTCATTTTGCTATGTA 59.116 34.615 5.55 0.00 43.94 2.29
632 639 5.711506 TGTGGATTCACTCATTTTGCTATGT 59.288 36.000 5.55 0.00 43.94 2.29
633 640 6.032094 GTGTGGATTCACTCATTTTGCTATG 58.968 40.000 5.55 0.00 43.94 2.23
634 641 5.948162 AGTGTGGATTCACTCATTTTGCTAT 59.052 36.000 5.55 0.00 44.07 2.97
635 642 5.316167 AGTGTGGATTCACTCATTTTGCTA 58.684 37.500 5.55 0.00 44.07 3.49
636 643 4.147321 AGTGTGGATTCACTCATTTTGCT 58.853 39.130 5.55 0.00 44.07 3.91
637 644 4.510038 AGTGTGGATTCACTCATTTTGC 57.490 40.909 5.55 0.00 44.07 3.68
646 653 8.723942 AGACATATTTTAGAGTGTGGATTCAC 57.276 34.615 0.00 0.00 43.87 3.18
647 654 9.817809 GTAGACATATTTTAGAGTGTGGATTCA 57.182 33.333 0.00 0.00 0.00 2.57
648 655 9.817809 TGTAGACATATTTTAGAGTGTGGATTC 57.182 33.333 0.00 0.00 0.00 2.52
650 657 9.770097 CATGTAGACATATTTTAGAGTGTGGAT 57.230 33.333 0.00 0.00 34.26 3.41
651 658 7.710907 GCATGTAGACATATTTTAGAGTGTGGA 59.289 37.037 0.00 0.00 34.26 4.02
652 659 7.495606 TGCATGTAGACATATTTTAGAGTGTGG 59.504 37.037 0.00 0.00 34.26 4.17
653 660 8.424274 TGCATGTAGACATATTTTAGAGTGTG 57.576 34.615 0.00 0.00 34.26 3.82
654 661 9.618890 AATGCATGTAGACATATTTTAGAGTGT 57.381 29.630 0.00 0.00 34.26 3.55
663 670 9.955208 CAACATACAAATGCATGTAGACATATT 57.045 29.630 0.00 0.00 39.04 1.28
664 671 9.123902 ACAACATACAAATGCATGTAGACATAT 57.876 29.630 0.00 0.00 39.04 1.78
665 672 8.397148 CACAACATACAAATGCATGTAGACATA 58.603 33.333 0.00 0.00 39.04 2.29
666 673 7.094248 ACACAACATACAAATGCATGTAGACAT 60.094 33.333 0.00 0.00 39.04 3.06
667 674 6.206438 ACACAACATACAAATGCATGTAGACA 59.794 34.615 0.00 0.00 39.04 3.41
668 675 6.611381 ACACAACATACAAATGCATGTAGAC 58.389 36.000 0.00 0.00 39.04 2.59
669 676 6.128035 GGACACAACATACAAATGCATGTAGA 60.128 38.462 0.00 0.00 39.04 2.59
670 677 6.029607 GGACACAACATACAAATGCATGTAG 58.970 40.000 0.00 0.00 39.04 2.74
671 678 5.474876 TGGACACAACATACAAATGCATGTA 59.525 36.000 0.00 0.30 39.91 2.29
672 679 4.280425 TGGACACAACATACAAATGCATGT 59.720 37.500 0.00 0.00 37.09 3.21
673 680 4.807443 TGGACACAACATACAAATGCATG 58.193 39.130 0.00 0.00 36.50 4.06
674 681 5.664294 ATGGACACAACATACAAATGCAT 57.336 34.783 0.00 0.00 36.50 3.96
675 682 5.465532 AATGGACACAACATACAAATGCA 57.534 34.783 0.00 0.00 36.50 3.96
676 683 7.881643 TTAAATGGACACAACATACAAATGC 57.118 32.000 0.00 0.00 36.50 3.56
679 686 8.768955 GCATTTTAAATGGACACAACATACAAA 58.231 29.630 17.89 0.00 0.00 2.83
680 687 7.386299 GGCATTTTAAATGGACACAACATACAA 59.614 33.333 17.89 0.00 0.00 2.41
681 688 6.870965 GGCATTTTAAATGGACACAACATACA 59.129 34.615 17.89 0.00 0.00 2.29
682 689 7.096551 AGGCATTTTAAATGGACACAACATAC 58.903 34.615 17.89 0.00 0.00 2.39
683 690 7.238486 AGGCATTTTAAATGGACACAACATA 57.762 32.000 17.89 0.00 0.00 2.29
684 691 6.112927 AGGCATTTTAAATGGACACAACAT 57.887 33.333 17.89 0.00 0.00 2.71
685 692 5.543507 AGGCATTTTAAATGGACACAACA 57.456 34.783 17.89 0.00 0.00 3.33
686 693 6.919721 TCTAGGCATTTTAAATGGACACAAC 58.080 36.000 17.89 1.13 0.00 3.32
687 694 7.531857 TTCTAGGCATTTTAAATGGACACAA 57.468 32.000 17.89 0.00 0.00 3.33
688 695 7.450014 TCTTTCTAGGCATTTTAAATGGACACA 59.550 33.333 17.89 0.00 0.00 3.72
689 696 7.755373 GTCTTTCTAGGCATTTTAAATGGACAC 59.245 37.037 17.89 2.75 0.00 3.67
690 697 7.450014 TGTCTTTCTAGGCATTTTAAATGGACA 59.550 33.333 17.89 15.51 29.10 4.02
691 698 7.826690 TGTCTTTCTAGGCATTTTAAATGGAC 58.173 34.615 17.89 13.56 29.10 4.02
692 699 8.415950 TTGTCTTTCTAGGCATTTTAAATGGA 57.584 30.769 17.89 5.27 35.56 3.41
693 700 9.657419 ATTTGTCTTTCTAGGCATTTTAAATGG 57.343 29.630 17.89 3.11 35.56 3.16
699 706 9.657419 CCAAATATTTGTCTTTCTAGGCATTTT 57.343 29.630 23.24 0.00 35.56 1.82
700 707 8.260114 CCCAAATATTTGTCTTTCTAGGCATTT 58.740 33.333 23.24 0.00 35.56 2.32
701 708 7.619302 TCCCAAATATTTGTCTTTCTAGGCATT 59.381 33.333 23.24 0.00 35.56 3.56
702 709 7.125391 TCCCAAATATTTGTCTTTCTAGGCAT 58.875 34.615 23.24 0.00 35.56 4.40
703 710 6.489603 TCCCAAATATTTGTCTTTCTAGGCA 58.510 36.000 23.24 5.94 36.45 4.75
704 711 7.404671 TTCCCAAATATTTGTCTTTCTAGGC 57.595 36.000 23.24 0.00 36.45 3.93
705 712 8.416329 CCATTCCCAAATATTTGTCTTTCTAGG 58.584 37.037 23.24 15.51 36.45 3.02
706 713 9.189156 TCCATTCCCAAATATTTGTCTTTCTAG 57.811 33.333 23.24 8.23 36.45 2.43
707 714 9.189156 CTCCATTCCCAAATATTTGTCTTTCTA 57.811 33.333 23.24 6.60 36.45 2.10
708 715 7.124750 CCTCCATTCCCAAATATTTGTCTTTCT 59.875 37.037 23.24 4.06 36.45 2.52
709 716 7.267857 CCTCCATTCCCAAATATTTGTCTTTC 58.732 38.462 23.24 0.00 36.45 2.62
710 717 6.156775 CCCTCCATTCCCAAATATTTGTCTTT 59.843 38.462 23.24 6.34 36.45 2.52
711 718 5.662657 CCCTCCATTCCCAAATATTTGTCTT 59.337 40.000 23.24 6.03 36.45 3.01
712 719 5.043432 TCCCTCCATTCCCAAATATTTGTCT 60.043 40.000 23.24 5.58 36.45 3.41
713 720 5.208121 TCCCTCCATTCCCAAATATTTGTC 58.792 41.667 23.24 0.00 36.45 3.18
714 721 5.211201 CTCCCTCCATTCCCAAATATTTGT 58.789 41.667 23.24 5.47 36.45 2.83
715 722 5.211201 ACTCCCTCCATTCCCAAATATTTG 58.789 41.667 19.40 19.40 37.90 2.32
716 723 5.487861 ACTCCCTCCATTCCCAAATATTT 57.512 39.130 0.00 0.00 0.00 1.40
717 724 6.803587 ATACTCCCTCCATTCCCAAATATT 57.196 37.500 0.00 0.00 0.00 1.28
718 725 7.031917 AGTATACTCCCTCCATTCCCAAATAT 58.968 38.462 0.00 0.00 0.00 1.28
719 726 6.399013 AGTATACTCCCTCCATTCCCAAATA 58.601 40.000 0.00 0.00 0.00 1.40
720 727 5.235534 AGTATACTCCCTCCATTCCCAAAT 58.764 41.667 0.00 0.00 0.00 2.32
721 728 4.641868 AGTATACTCCCTCCATTCCCAAA 58.358 43.478 0.00 0.00 0.00 3.28
722 729 4.295905 AGTATACTCCCTCCATTCCCAA 57.704 45.455 0.00 0.00 0.00 4.12
723 730 4.232091 GAAGTATACTCCCTCCATTCCCA 58.768 47.826 5.70 0.00 0.00 4.37
724 731 4.232091 TGAAGTATACTCCCTCCATTCCC 58.768 47.826 5.70 0.00 0.00 3.97
725 732 5.888982 TTGAAGTATACTCCCTCCATTCC 57.111 43.478 5.70 0.00 0.00 3.01
726 733 7.227512 CACAATTGAAGTATACTCCCTCCATTC 59.772 40.741 13.59 0.00 0.00 2.67
727 734 7.056635 CACAATTGAAGTATACTCCCTCCATT 58.943 38.462 13.59 1.65 0.00 3.16
728 735 6.386927 TCACAATTGAAGTATACTCCCTCCAT 59.613 38.462 13.59 0.00 0.00 3.41
729 736 5.724370 TCACAATTGAAGTATACTCCCTCCA 59.276 40.000 13.59 0.00 0.00 3.86
730 737 6.235231 TCACAATTGAAGTATACTCCCTCC 57.765 41.667 13.59 0.00 0.00 4.30
731 738 8.738645 AATTCACAATTGAAGTATACTCCCTC 57.261 34.615 13.59 0.83 45.07 4.30
797 804 2.092323 TCCGAGTGAGTACATCAGTGG 58.908 52.381 7.21 6.38 41.87 4.00
800 807 6.567687 ATTATCTCCGAGTGAGTACATCAG 57.432 41.667 0.00 0.00 42.12 2.90
883 896 8.225107 TGTTCATCTTCGGTAAATTTAAACTCG 58.775 33.333 0.00 2.88 0.00 4.18
892 905 6.655003 ACTTGACATGTTCATCTTCGGTAAAT 59.345 34.615 0.00 0.00 32.84 1.40
931 944 3.005578 GGTATGGCTTTCTCTACCCTACG 59.994 52.174 0.00 0.00 0.00 3.51
941 954 2.846827 ACCTTAGCTGGTATGGCTTTCT 59.153 45.455 16.13 0.00 40.74 2.52
1089 1102 1.613925 CTGACGTGGAAAGACCTCTCA 59.386 52.381 0.00 0.00 39.86 3.27
1092 1105 2.814280 TTCTGACGTGGAAAGACCTC 57.186 50.000 0.00 0.00 39.86 3.85
1130 1143 1.065418 GGGTGGTGGACAATGTAGAGG 60.065 57.143 0.00 0.00 0.00 3.69
1174 1199 1.028905 CTCTCTGACTCCGACCCATC 58.971 60.000 0.00 0.00 0.00 3.51
1175 1200 0.626382 TCTCTCTGACTCCGACCCAT 59.374 55.000 0.00 0.00 0.00 4.00
1176 1201 0.322636 GTCTCTCTGACTCCGACCCA 60.323 60.000 0.00 0.00 42.21 4.51
1177 1202 0.322636 TGTCTCTCTGACTCCGACCC 60.323 60.000 0.00 0.00 45.54 4.46
1178 1203 1.200484 GTTGTCTCTCTGACTCCGACC 59.800 57.143 0.00 0.00 45.54 4.79
1179 1204 1.135916 CGTTGTCTCTCTGACTCCGAC 60.136 57.143 0.00 0.00 45.54 4.79
1358 1386 0.368907 GCGCTGGTATACACAACACG 59.631 55.000 0.00 6.11 0.00 4.49
1361 1415 6.780706 ATATAAAGCGCTGGTATACACAAC 57.219 37.500 12.58 0.00 0.00 3.32
1368 1422 7.713734 TTAGACCTATATAAAGCGCTGGTAT 57.286 36.000 12.58 14.75 0.00 2.73
1390 1444 2.802719 GGAAGCATCCCCACAACTTTA 58.197 47.619 0.00 0.00 40.10 1.85
1406 1463 6.506500 AACAGTGCAGAATATTCAAGGAAG 57.493 37.500 17.56 9.09 0.00 3.46
1409 1466 5.220931 GCCTAACAGTGCAGAATATTCAAGG 60.221 44.000 17.56 7.66 0.00 3.61
1433 1490 3.739810 CACCTCATCATTATGACTCGCTG 59.260 47.826 0.00 0.00 37.20 5.18
1437 1494 6.403866 AGAGACACCTCATCATTATGACTC 57.596 41.667 0.00 0.00 41.87 3.36
1445 1502 6.114187 TGTTAACAAGAGACACCTCATCAT 57.886 37.500 5.64 0.00 41.87 2.45
1453 1511 6.929606 ACTATCTGGTTGTTAACAAGAGACAC 59.070 38.462 21.12 9.12 44.34 3.67
1457 1515 8.290325 GGAAAACTATCTGGTTGTTAACAAGAG 58.710 37.037 21.12 18.31 44.34 2.85
1477 1535 2.152016 AGCGGCACTAGAAAGGAAAAC 58.848 47.619 1.45 0.00 0.00 2.43
1508 1567 8.954950 TGTTGATTAAATTGACCAAAACATGT 57.045 26.923 0.00 0.00 0.00 3.21
1532 1591 7.538334 TGTCGATGCAGAAAAATACTTCATTTG 59.462 33.333 0.00 0.00 36.93 2.32
1567 1627 4.471025 TCGCCCAGATCACCATCATATATT 59.529 41.667 0.00 0.00 0.00 1.28
1585 1645 5.607119 ACATTCGTTCATTAATATCGCCC 57.393 39.130 0.00 0.00 0.00 6.13
1647 1709 7.798239 TTGATGTCAAAGTCGGGTTGAAAACT 61.798 38.462 0.00 0.00 38.88 2.66
1670 1732 6.543465 TGATGTGGATAAAGCTGGTTCTATTG 59.457 38.462 0.00 0.00 0.00 1.90
1676 1738 3.245229 TGGTGATGTGGATAAAGCTGGTT 60.245 43.478 0.00 0.00 0.00 3.67
1685 1747 3.706594 GAGAGAAGGTGGTGATGTGGATA 59.293 47.826 0.00 0.00 0.00 2.59
1724 1786 4.629634 CCGGACCAAAATTTAAATTGAGCC 59.370 41.667 14.04 10.22 0.00 4.70
1725 1787 5.474825 TCCGGACCAAAATTTAAATTGAGC 58.525 37.500 14.04 3.31 0.00 4.26
1728 1790 8.705134 GTTACTTCCGGACCAAAATTTAAATTG 58.295 33.333 14.04 4.53 0.00 2.32
1735 1797 4.891168 ACAAGTTACTTCCGGACCAAAATT 59.109 37.500 1.83 0.74 0.00 1.82
1823 1885 4.527038 ACGAGAGAGAAACCATCCAGTTTA 59.473 41.667 0.00 0.00 40.01 2.01
1826 1888 2.530701 ACGAGAGAGAAACCATCCAGT 58.469 47.619 0.00 0.00 0.00 4.00
1827 1889 3.601443 AACGAGAGAGAAACCATCCAG 57.399 47.619 0.00 0.00 0.00 3.86
1828 1890 4.065088 CAAAACGAGAGAGAAACCATCCA 58.935 43.478 0.00 0.00 0.00 3.41
1829 1891 3.437049 CCAAAACGAGAGAGAAACCATCC 59.563 47.826 0.00 0.00 0.00 3.51
1830 1892 3.120165 GCCAAAACGAGAGAGAAACCATC 60.120 47.826 0.00 0.00 0.00 3.51
1831 1893 2.814336 GCCAAAACGAGAGAGAAACCAT 59.186 45.455 0.00 0.00 0.00 3.55
1832 1894 2.218603 GCCAAAACGAGAGAGAAACCA 58.781 47.619 0.00 0.00 0.00 3.67
1833 1895 2.218603 TGCCAAAACGAGAGAGAAACC 58.781 47.619 0.00 0.00 0.00 3.27
1889 1951 6.430000 GTCAACCCTAATTAAGCTCACTCAAA 59.570 38.462 0.00 0.00 0.00 2.69
1890 1952 5.938125 GTCAACCCTAATTAAGCTCACTCAA 59.062 40.000 0.00 0.00 0.00 3.02
1891 1953 5.248477 AGTCAACCCTAATTAAGCTCACTCA 59.752 40.000 0.00 0.00 0.00 3.41
1892 1954 5.735766 AGTCAACCCTAATTAAGCTCACTC 58.264 41.667 0.00 0.00 0.00 3.51
1893 1955 5.763876 AGTCAACCCTAATTAAGCTCACT 57.236 39.130 0.00 0.00 0.00 3.41
1894 1956 6.641474 ACTAGTCAACCCTAATTAAGCTCAC 58.359 40.000 0.00 0.00 0.00 3.51
1895 1957 6.439375 TGACTAGTCAACCCTAATTAAGCTCA 59.561 38.462 23.24 0.00 36.53 4.26
1896 1958 6.875076 TGACTAGTCAACCCTAATTAAGCTC 58.125 40.000 23.24 0.00 36.53 4.09
1897 1959 6.869206 TGACTAGTCAACCCTAATTAAGCT 57.131 37.500 23.24 0.00 36.53 3.74
1898 1960 6.483640 CCATGACTAGTCAACCCTAATTAAGC 59.516 42.308 28.43 0.00 43.58 3.09
1899 1961 7.792032 TCCATGACTAGTCAACCCTAATTAAG 58.208 38.462 28.43 5.84 43.58 1.85
1900 1962 7.622081 TCTCCATGACTAGTCAACCCTAATTAA 59.378 37.037 28.43 1.56 43.58 1.40
1901 1963 7.069578 GTCTCCATGACTAGTCAACCCTAATTA 59.930 40.741 28.43 2.10 43.58 1.40
1902 1964 5.964477 TCTCCATGACTAGTCAACCCTAATT 59.036 40.000 28.43 7.58 43.58 1.40
1903 1965 5.364157 GTCTCCATGACTAGTCAACCCTAAT 59.636 44.000 28.43 8.34 43.58 1.73
1904 1966 4.710375 GTCTCCATGACTAGTCAACCCTAA 59.290 45.833 28.43 10.74 43.58 2.69
2018 2080 9.435688 GGCCAACAAGTCAAAGAAAAATAATAT 57.564 29.630 0.00 0.00 0.00 1.28
2022 2084 6.227298 TGGCCAACAAGTCAAAGAAAAATA 57.773 33.333 0.61 0.00 0.00 1.40
2072 2135 1.668151 GGCGTCTGTGGTGACTTCC 60.668 63.158 0.00 0.00 35.00 3.46
2080 2143 0.597637 GATACCATCGGCGTCTGTGG 60.598 60.000 6.85 13.55 37.74 4.17
2089 2152 4.081972 CACTGGGATAAGAGATACCATCGG 60.082 50.000 0.00 0.00 0.00 4.18
2091 2154 5.337169 GCTCACTGGGATAAGAGATACCATC 60.337 48.000 0.00 0.00 0.00 3.51
2092 2155 4.530161 GCTCACTGGGATAAGAGATACCAT 59.470 45.833 0.00 0.00 0.00 3.55
2093 2156 3.898123 GCTCACTGGGATAAGAGATACCA 59.102 47.826 0.00 0.00 0.00 3.25
2098 2170 2.427453 GTTCGCTCACTGGGATAAGAGA 59.573 50.000 0.00 0.00 37.47 3.10
2104 2176 0.179100 CGATGTTCGCTCACTGGGAT 60.179 55.000 0.00 0.00 37.47 3.85
2126 2198 9.705290 TTTTTCTGTATTCATTTAAGCCTTTCC 57.295 29.630 0.00 0.00 0.00 3.13
2145 2217 5.046910 ACATTGGTACTCGCATTTTTCTG 57.953 39.130 0.00 0.00 0.00 3.02
2147 2219 5.041951 TGACATTGGTACTCGCATTTTTC 57.958 39.130 0.00 0.00 0.00 2.29
2159 2231 3.450904 AGCCCTAGACTTGACATTGGTA 58.549 45.455 0.00 0.00 0.00 3.25
2185 2257 0.106419 GTGAAACCAACCCACCAGGA 60.106 55.000 0.00 0.00 39.89 3.86
2201 2273 2.128535 TGGTTAGGTTCCTTGTGGTGA 58.871 47.619 0.00 0.00 34.23 4.02
2228 2300 0.464735 TCAACACAAACCGGGAGTGG 60.465 55.000 21.84 9.51 37.58 4.00
2229 2301 0.661020 GTCAACACAAACCGGGAGTG 59.339 55.000 18.01 18.01 39.12 3.51
2232 2304 0.183971 ATGGTCAACACAAACCGGGA 59.816 50.000 6.32 0.00 38.45 5.14
2234 2306 1.001815 GACATGGTCAACACAAACCGG 60.002 52.381 0.00 0.00 38.45 5.28
2298 2370 2.224378 CCCTGTCCTACATAGCACATGG 60.224 54.545 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.