>input_sequence_81671
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----------------------------------------------------ATGAGAGCCAGCACTTCTCCAGGGCGCG
CGTACCCGCTAAGCTTATCAAGGATCACAGCACGGCCCTTTCTCCCGTTCATGGCCGTCACTGAGAGGTCTTTCCACGTC
AGAAATACCTCCGTAGTACCGGCCTCTACATTGTCCACCACCCCACTGGCCGGCG------------GCGAAGCCTTCGA
TGGGTCGGAGTCAGAGAGACAACGTGGGAAGAAGATGGGGCTTGACGGCCACGCCGACCAGCCACGCCATGAAACCATGG
CGGTGCTCGACG---TCGTCGACCGGAGTGGCTTGGTAGGGCTCGGCGTCGGAGCCCATCTCGGCAGTGGTGACGCTGCC
ATGTATATTCTCTCTGTGTGCTTTTC--------------------------GTGTTGTGTATACCAGCGCTTTATATAG
GTCTA---A-----------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G128500
AGAGCGCCGTATGAGCATGGGCAACTTACGGAGGTTCTGGATGCAATCTTCTGCCGGCAACCGTTTATCATGATGTCTCC
ACTCTCTTTCATATTGGGTCCAAGTCGTCCTGATTAAGCATACATGTTATGACCATATTCATAAGTGTAAATAAGGAGAG
TATACCCGAACTTGTGCGCAAACTTTAGATTAAGAACT---GAAGGTTAAATAATCTTTTAATGTATTTATTTTATCGTC
TTGGTATCCAGACATGTTTTCTAAGTAATATCACAAACTGCAAGAGTATATATACCCCAAGACCATGACTGCAACAAATT
AGCAGATAACCAACATATCTCCTATCATATGTAATTTTTCCCGGGTACTTTAAATTATGGTTATC--TAGTATCATCTAT
ATGCAGAGACTGGAAGATAATACAAGCATTACTTTCAAAAGTTTCC-TTTTTCATTTCCCTAGCAAGTACTCTCTCCGTT
CCTAAATATTTGTCTTTTTAGAGATTTCAACAAATGACTACTCCCTCCGCCCGGAATTACTCGTCGGAGAAATGAATAAA
AATGGATGTATTAAAAACTAAAATACGTCTAGATACATCCATTCCTCCGACAAGTATTTCCGGACGGAGGGAGTACATAC
ATAGCAAAATGAGTGAATCCACACTCTAAAATATGTCTACATGCATTTGTATGTTGTGTCCATTTAAAATGCCTAGAAAG
ACAAATATTTGGGAATGGAGGGAGTATACTTCAATTGTGAATTGAGTCCTTTTCTCAATAATGGAAGGGCAGATACAGTA
TCGCCACTGATG------TACTCACTCGGAGATAATAAATTTATGCATTTCTAGACAGTATTGAAGAAAGTAAAGTTTTC
TTTTGAGCAAAAAGTCGAGTTTAAATTTACCGAAGATGAACATGTCAAGTTACCAGCTTATTTCGTAGGGTAGAGAAAGC
CATACCAGCTAAGGTATCAAGTAGAGTAGTTTTGCCACAGCCCGAAGGACCCATGAGAGCCAGCACTTCTCCAGGGCGCG
CGTACCCGCTAAGCTTATCAAGGATCACAGCACGGCCCTTTCTCCCGTTCATGGCCGTCACTGAGAGGTCTTTCCACGTC
AGAAATACCTCCGTAGTACCGGCCTCTACATTGTCCACCACCCCACTGGCCGGCG------------GCGAAGCCTTCGA
TGGGTCGGAGTCAGAGAGACAACGTGGGAAGAAGATGGGGCTTGACGGCCACGCCGACCAGCCACGCCATGAAACCATGG
CGGTGCTCGACG---TCGTCGACCGGAGTGGCTTGGTAGGGCTCGGCGTCGGAGCCCATCTCGGCAGTGGTGACGCTGCC
ATGTATATTCTCTCTGTGTGCTTTTC--------------------------GTGTTGTGTATACCAGCGCTTTATATAG
GTCTA---AAGTTGTGGGGATGCTTCCTTGAATATTCTGCACTGTTAGGCAGCGAGTCATAATG-ATGAGGTGTCTCTTG
TTAACAACCAGATAGTTT-TCCTTTCTAGTGCCGCTAGAATAATACACATGTTTTGGTCAATTTAATCAACAAATGAAGT
ATTTTTC-TGCATCGACAAATAAAGTAATATATGATGGTGATCTGGGCGATATTAATGAACGAATGTTCCATTGAGAATA
ATACTGCATATCTATCT--TTTTTCACTAGTTTTCAACCCGACTTTGACATCAATAGAACCAGCTTTATCCACATCACCA
CCTTCTCTCTTCTCTATAATACACCGGCTCAATTTAAATTTTGGTCCGGAAGTAACTTGTTAAGATGTTATCACATTTTA
AAATACCTCAAAAACTTTCTACAATCATGCATAATTCAATTTATTAAACTGGATGGTTTCTCTCTCGTTTTGGCAAACCG
TTTACGACAAACCCATTTATTAAGTATTGGTTTGAGTGAGCTTAATTAGGGTTGACTAGTCATGGAGACATGACACGATA
GCACTAAGGGTGTCATAATCTTGCAACGATAAACATGCTGTTGAATTAGGTTTCGTCCTTCATGGGCTTACGTCGTTTTA
TATTATT-TTTCTTTGACTTGTTGGCCATGTCTATTTTTTTAACATGAGATTGAGGAAGTCACCACAGACGCCGAT----
-----GGTATCTCTTATCCCAGTGAGCGAACATCGCCGGAAAGGCTTAAATGAATACAGAAAAATGCGAGTACCAATGTC
AAGTCTAGGGCTTGAATCCTGGTGGGTTGGTTTCACCACAAGGAACCTAACCATCTGAGCCACTCCCGGTTTGTGTTGAC
CATGTCTATTGGTTGGACCTTAGTTTATTTGACATGACTTTACTTTTAACCATGT----GCTATGTAGGACAGGGTGAGA
CCCCCTAGGTGAAGTTTACTATTTTCCTCAACAAATAATAACTAGCTAAATACCCATGTGTGTTGTTG
>chr2A_1
AGAGCGTCGTATGAGCATGGACAACTTACAGAGGTTCTGGATGCAATCTTCTGTCGGCAACCGTTGATCATGATGTCTCC
ACTCTCTTTCATGTTGGGTCCAAGTCGTCCTGTTTAACCATACATGTTATGACCATATTCGTAAATGTAAACAAGGAGAG
TATACCCAAACTTGTGTGCAAACTTTAGACTTAGTAGAACCGAAGGTTAAATAATCTTTTGATGTATTTATTTTATCGTC
TTGGTCTCTGGACATGTTTTCTAAGCAATATCACAAACTGCAAGAGTATAAATACCCCAAGACCATGACTGCAACAAATT
AGCAGATAACCAACATATCTCCTATCATATGTAATTTTTCCTGAGCACTTTAAATTATGGTTACCTATAGTACCATCTAG
ATGCAGAGACTGGAAGATAATACAAGCATTACTTTCAAAAGTTTCG-TTTTTCATTTCCCTAGCAAGTT-----------
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--------------------------TACTTCAATTGTGAATTGAGTCCTTTTCTCAATAATGGAAGGGCAGATACAATA
TCGGCAATGATC------TACTCATTTTCAGATAATATAGTTATGCATTTCTAGACAGGATTGAAGGAAGTAAAGCTATG
TTTTGAGCAAAAAGTTGAGTTTAATTTTTCCGAAGATGAACATGTCAAGTTACCAGCTTATTTTGTTGGGTAG-GCAAGC
CATACCAGCCAAGGTATCAAGTAGAGTAGTTTTGCCACAGCCCGAAGGACCCATGAGAGCCAGCACTTCGCCAGGGCGCG
CGTACCCGCTAAGCCCATCAAGGATCACAGCACGACCCTTTCTCCCGCTCATGGCCGTCACAGAAAGGTCTTTCCACGTG
AGAAATACCTCCGTAGTACCGGGCTTTGCATTGTCTACCACCCCACTAGCCGGCG------------GC-----------
----TCGGAGTCGGAGAGACAACGCGGGAAGAAGATGGGGCTAGACGGCCACGCCGACCATCCGCGCCATGAAACCATGG
CGGTGCTCGACGACGTCGTCGACCGGAGTGGCTTGGTAGGGCTCGGCGTCGGAGCCCATCTCGGCAGCGGTGACGCTGCC
ATGTATATTCTCTCTGTGTTTTCTGTG---TGTTAGGGGTTTCA--GTGTGTGTCTAGTGTCTACCAGCCCTTTATATAG
GTCGTCCGAACTTGTGGGGATGTTTAGTTGAATATTCTGGCCTGTTAGGTAGCTAGTCATATTGCATGAGATGTGTCTTG
TTAACAACCAGATA-TTT-TCCTTTCTAGCGCCGCTAGAATAATACGCATGTTTTAGATAATTTAATCAAAAAATGAAGT
ATTTTTTTTGCATCGACAAATAAAGTTATATATGATGGTGATCTCAACGCTGTTAACGAACGAAAGTTCCGTTGAGAATA
ATACTGCATATCTATCTTGTTTTTCACTGGTTTTCAACCCGACTTTGACATAAATAGCACCAGCTTGATCCACATCACCA
CCTTCTCTCTTCTTTATAATACACCACCTAAATTTAGATTTTGGTCCGGAAATCACTTGTTAAGATGCTATCACATTTCA
AAATACCTCAAAAACTTTATACAATCG-GCATAATTCAATTATTAAGCTGAAT---TTTCTCTCTTGTTTTGGCAAACCG
TTTACAACAAACCCATTTATTAAGTATTGG----------------TAGGGTTGACAAGTCATGGAGACATGACATGATA
GCACTAAGGGTGTCACAATCTTGCAACGATAAACATGCCGTTGAATTAGGTTTCGTCCTTCATGGGCTTACTTCGTTTTT
ATAAAAAATTTCTTTGACTTTTAGGCCATATCTATTTTTCTAACACGAGATTGACGAAGTCATCACAGACGTCTTGTAGA
CGAAGGTAACCTCTTGTCCCGCTGAGTGAGCACCGCCAGAAAGGCTTAAATAAGTAAAAAAAATTGCAAAAACCAATGTC
AAGTCTAGGGCTTGAACCCTGGTGGGTTGGTTCCACCACAAGGAACCTAACCATCTAAGGTACAGACAGTTTGTGTTGAC
CATGTCTGTTGGTTGGGCCTTAGTTTATTTGACATGACTTTACTTTTAAACATGTTGGTGCTATGTAGGACCGGGT--GA
CCCCCTAGGTGAATTTTACTATTTCCCTCAACAAATAATAACTAGCTAAATACCCACATGTATTGTTG
>chr2D_8
-------CGCATGAGCATGTGCAACTTACGGAGGTTCTGGATGCAATTTTCTGTCGGCAACCGTTGATCATGATCTCTCC
ACTCTCTTTCATGTTGGGTCCAAGTCGTCCTGTTTAAGCATACATGTTATGACCAAAA-CGTAAATGTAAACAAGGAGAG
TATACCCAAACTTGTGTGCAAACTTTAGATTTAGAACT---GAAGGTTAAATAATCTTCTGATGTATTTCTTTTATCGTC
TTGGTCTCCGGACATGTTTTCTAAGCAATATCACAAACTGCAAGAGTATAAATACCCCAAGACCATGACTGCAACAAATT
AGCAGATAACCAACATATCTCCTATCATATGTAATTTTTCC-GAGCACTTTACATTATGGTTACCTA--GTATCATCTAG
ATGTGGAGACTGGAAGATAATACAAATATTATTTTCAACGGTATCTTTTTTTCATTTCCCTAGCAAGTG-----------
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--------------------------TACTTCAATTACGAATTGGGTCCTTTTCTCAATAATGGGCGGGCAGATACAGTA
TCGGCAATGATGTACATGTACTCCTTTTGAGATAACATAGTTATGCATTTCTAGACAGGGTTGAAGAAAGTAAAGCTTTC
CTTTGAGCAAAAAGTTGAGTATAAGTTTCCCGAAGATGAACATGTCAAGTTACTAGCTTATTTTGTAGGGTAG-GAAAGC
CATACCAGCTAAGGTATCAAGTAGAGTAGTTTTGCCACAGCCCGAAGGACCCATGAGAGCCAGTACTTCGCCAGGGCGCG
CGTAGCCGCTAAGCTTATCAAGGATCACAGCACGACCCTTTCTCCCGTTCATGGCCGTCACCGAAAGGTCTTTCCATGTG
AGAAATACCTCCGTAGTACCGGGCTCTACATTGTCTACCACCCCACTAGCCGGCG------------GC-----------
----TCGGAGTCGGAGAGACAACGCGGGAAGAAGATGGGGCTGGACGGCCACGTCGACCATCCGCGCCATGAAACCATGG
CGGTGCTCGACGACGTCGTCGACCGGAGTGGCTTGGTAGGGCTCGGCGTCGGAGCCCATCTCGGCAGCGGTGACGCTGCC
ATGTATATTCTCTCTGTGTTTTGTGTG---TGTTAGGGGTTTCA--G---------TGTGTCTACCAGCCCTTTATATAG
GTCGTCCGAACTTGTGGGGATGTTTAGTTGAATATTCTGGCCTGTTAGGTAGCTAGTCATATTGCATGAGATGTGTCTTG
TTAACAACCAGATA-TTTTTCCTTTCTAGCGCCGCTAGAATAATACGCATGTTCTAGATAATTTAATCAAAAAATGAAG-
ATTTTTTTTGCATCGACAAATGAAGTTATATATGATGGTGATATTGGTGCTGTTAACGAACGAAAGTTCCGTTGAGAATA
ATACTGCATATCTATCTTGTTTTTCACTGGTTTTCAACCCGACTTTGACATAAATAGCACCAGCTTGATCCACATCACCA
CCTTCTCTCTTCTTTATAATACACCACCTAAATTTAGATTTTGGTCCGGAAATCACTTGTTAAGATGCTATCACATTTTA
AAATACCTCAAAAAATTTATACAATTG-GAATAATTCAATTATTAAGCTGAAT---TTTCTCTCTTGGTTTGGCAAACCG
TTTACGACAAACCCAC----TAAGTATTGG----------------TAGGGTTGACAAGTCATGGAGACATGACATGATA
GCACTAAGGGTGTCATAATCTTGCAACGATAAACATGCTGTTGAATTAGGTTTCGTCCTTCATGGGCTTACTTCGTTTT-
TATAATT-TTTCTCTAACTTGTAGGCCATATCTATTTTTCTAACACAAGATTGACGAAGTCATCACAGACGTCTTGTAGA
CGAAGGGTACCTCTTGTCCCACTGAGCGAACACCGCCAGAAAGGCGTAAATGGATAA--AAAAATGCGAGCACCAATGTC
AACTCTAGGGCTTGAACCCTGGAGGGTTGGTTCCACCACAAGGAACCTAACCATCTGAGGTACACACGGTTTGTCTTGAC
CATGTCTATTGGTTGGGCCTTAGTTTATTTCACATGACTTTACTTTTAAACATGTTGGTGATATGTGAGACCGGGTGAGA
CCCCCTAGGTGAATTTGACTATTTCCCTCAACAAATAATAACTAGCTAAATACCCACGTGTATTGTTG
>chr2B_861
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------------------------------------------------------------------------AAGTTTTT
C--TGAACAAAAGATAGAGTGTAACTTTACAGAAGATGGACGTTTCAAGTTATCAG-TTTTTTTGTAAGGTAG-GAAAGT
TATACCAGCCAATGCATCAAGTAGAGTAGTTTTGCCACAGCCCGAAGGACCCATGAGAGCCAGCACTTCGCCAGGGCGCG
CGTACCCACTAAGCCCATCAAGGATCACAGCATGGCCCTTTCTCCCATTTATGACCGTCACCGATAGATCCTGCCACTTC
AGAAATACCCTGGCAACGCCGGGCTCCACATTGTCCACTACCCCATCGGCCGGCGAAGCCTCCCATGGC-----------
----TCCGAATTAGAGAGACAACGTGGGAAGAAGATGGGGCTTGACGGCCACGCCGACCAGCCGCGCCATGAAACCATAG
CAGTGCTCGACGACGTCGTCGACTGTGGTGGCCTGGTGGGGCTCGGCGTAGGAGCCCATCTCGGCAGTGGTGACGCTGCC
ATGTATATTCTCTTTGTGTGCTTTTTGTGTTGTTTGAGGTTTCCATG---------TGTGTCTACCGGCGCCTTATATAG
GTCCA---AAGTTGAGGGGATGTTAACTG----------------------GCTGGTCATATTGCATGAGATGTGTCTTG
TTAAAAGCCAGAGA-CTCTTCCTTTGTAGTACAGCTGGAATAATGAGCACCTTTTGGTTTAGTTAATCAAGAAATAAAGT
G-------------------------------TGATGGTGATCTTTGCACCAAGTAGAGTAGTTTTGCCACAGCCCGAAG
GACCCATGAGAGCCAGCACTTCGCCAGGGCGCGCGTACCCACTAAGC------------CCATCAAGGATCACAGCATGG
CCCTTTCTCCCATTTATGACCGTCACCGATAGATCCTGCCACTTCAGAAATACCCTGGCAACGCCGGGCTCCACATTGTC
CACTACCCCATCGGCCGGCGAAGCCTCCCATGGCTCCGAATTAGAGAGACAACGTGGGAAGAAGATGGGGCTTGACGGCC
ACGCCGACCAGCC---------------------------------------------------GCGCCATGAAACCATA
GCAGTGCTCGACGACGTCGTCGACTGTGGTGGCCTGGTGGGGCTCGGCGTAGGAGCCCATCTCGGCAGTGGTGACGCT--
------------------------GCCATGTATATTCTCTTTGTGTGCTT------------------------------
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---------------------------------------------------------------------TTTGTGTTGT-
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>chr2B_861
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------------------------------------------------------------------------AAGTTTTC
C--TGAACAAAAGATAGAGTGTAACTTTAAAGAAGATGGAAGTTTCAAGTTACCAG-CTTTTTTGAAAGGTAG-GGAAGT
TATACCAGCCAAGGCATCAAGTAGAGTAGTTTTGCCACAGCCCGAAGGACCCATGAGAGCCAGCACTTCGCCAGGGCGCG
CGTACCCACTAAGCCCATCAAGGACCACAGCATGTCCCTTTCTCCCGTTTATGACCGTCACCGATAGATCCTGCCACTTC
AGAAATACCCCGGCAACGCCTAGCTCCACATTGTCCACTTCCCCATCGGCCGGCGAAGCTTCCCATTGC-----------
----TCTGAGTTAGAGAGACAACGTGGGAAGAAGATAGGGCTTGATGGCCACGCCGACCGGCCGCGCCATGAAACCATAG
CAGTGCTCGACGACGTCGTCGACTGTAATGGCCTGGTGGGGCTCGGCGTCGGAGCCCATCTCGGCAGTGGTGACTCTGCC
ATATATACTTTGTGTGCCTTTTGAGA-------TTGAGGTTTCC--A---------TGTGTCTACCAGCGCCTTATATAG
GTCCA---AAGTTGTG----------------------------------------------------------------
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>SNPs
------S----------------------------------------------S-----------S--------------
------------S-------------------S---------------------------S---S------S--------
-------S--------S--------------S----------------------------S-------------------
-----S---S---------------S------------------------S-----------------------------
-----------------------------------------S-S-S-----------------S---------------S
---------------------------------------------S----------------------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------------------
---S--S-----------------S-SS---------S-S------------------S---------------------
---------------S--------S--------------------------------------S---------S------
---------------------------------------------------------------------S----------
-------------------------------------------------------------S--S---------------
----------------------S----------------------------------------------SSSSSSSSSSS
SSSS-----------------------------------------------------------S----------------
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-------------------------S----------------------------S------S------------------
---S------------------S--S-------------SS--------S---S-------S--------S---S-----
--------------S-------------------------------S-----------S-----------S---------
------S-------------------S-----------------S----S------S-------------S---------
----------------------------S----------------------S-----S--------S-------------
-------------S-----------SS--S------S--------------S-S-------------S------------
--------------------------SS----------------S--SSSSSSSS----------S--------------
------------------------------SSSSSSSSSSSSSSSS----------S-----------------------
-----------------------------------------------------------------------S-------S
---S------------------S-------------------------------S-------S--------S-SSS----
---------S-----S-----S----------S----S------------------S-S-----------S---------
----------------S---------------S--------------------------SS--S-S--------------
----------------S--------------------------------S---------------------S--------
-------------S----------S-------------------------------S----S------
>forward_549
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-------------------------------------------------CCCGGAATTACTCGTCGGAG-----------
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>reverse_2257
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----------------TCCTGGTGGGTTGGTTTCAC--------------------------------------------
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