Multiple sequence alignment - TraesCS2B01G121500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G121500 chr2B 100.000 3956 0 0 1 3956 88933632 88929677 0.000000e+00 7306.0
1 TraesCS2B01G121500 chr2B 95.858 169 7 0 3559 3727 28427172 28427340 1.400000e-69 274.0
2 TraesCS2B01G121500 chr2B 94.083 169 8 2 2610 2776 88919434 88919266 5.070000e-64 255.0
3 TraesCS2B01G121500 chr2B 87.919 149 17 1 2266 2414 88925647 88925500 1.460000e-39 174.0
4 TraesCS2B01G121500 chr2B 100.000 85 0 0 2868 2952 88919242 88919158 1.470000e-34 158.0
5 TraesCS2B01G121500 chr2B 91.919 99 5 3 3041 3138 88919138 88919042 6.900000e-28 135.0
6 TraesCS2B01G121500 chr2B 91.250 80 7 0 2425 2504 88919512 88919433 4.180000e-20 110.0
7 TraesCS2B01G121500 chr2D 96.268 3162 86 16 1 3148 56203787 56200644 0.000000e+00 5156.0
8 TraesCS2B01G121500 chr2D 91.594 345 13 7 2610 2952 56191473 56191143 2.780000e-126 462.0
9 TraesCS2B01G121500 chr2D 87.415 294 18 6 3276 3562 56196745 56196464 1.770000e-83 320.0
10 TraesCS2B01G121500 chr2D 87.324 142 16 2 2261 2401 56192369 56192229 1.140000e-35 161.0
11 TraesCS2B01G121500 chr2D 89.431 123 8 4 3033 3153 56191068 56190949 2.460000e-32 150.0
12 TraesCS2B01G121500 chr2D 90.476 105 10 0 2400 2504 56191576 56191472 5.330000e-29 139.0
13 TraesCS2B01G121500 chr2D 97.778 45 1 0 3049 3093 56191114 56191070 1.180000e-10 78.7
14 TraesCS2B01G121500 chr2A 94.742 3138 122 21 1 3115 57833083 57829966 0.000000e+00 4841.0
15 TraesCS2B01G121500 chr2A 91.388 418 20 6 3147 3562 57829401 57828998 3.450000e-155 558.0
16 TraesCS2B01G121500 chr2A 93.785 177 9 1 3556 3730 602450603 602450427 8.430000e-67 265.0
17 TraesCS2B01G121500 chr4D 76.984 630 135 9 1041 1665 300783379 300784003 6.290000e-93 351.0
18 TraesCS2B01G121500 chr4D 94.186 172 9 1 3553 3724 450155645 450155815 1.090000e-65 261.0
19 TraesCS2B01G121500 chr4B 77.565 575 119 9 1096 1665 373981843 373982412 4.900000e-89 339.0
20 TraesCS2B01G121500 chr4B 94.286 175 8 2 3559 3732 80990814 80990641 2.340000e-67 267.0
21 TraesCS2B01G121500 chr5D 94.798 173 9 0 3559 3731 274578177 274578005 1.810000e-68 270.0
22 TraesCS2B01G121500 chr3B 93.750 176 11 0 3552 3727 640055236 640055061 8.430000e-67 265.0
23 TraesCS2B01G121500 chr3B 93.370 181 8 4 3559 3737 716631002 716631180 8.430000e-67 265.0
24 TraesCS2B01G121500 chr3B 93.296 179 11 1 3560 3738 225179962 225180139 3.030000e-66 263.0
25 TraesCS2B01G121500 chr1D 92.935 184 10 3 3559 3740 238940381 238940199 8.430000e-67 265.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G121500 chr2B 88929677 88933632 3955 True 7306.0 7306 100.0000 1 3956 1 chr2B.!!$R2 3955
1 TraesCS2B01G121500 chr2D 56196464 56203787 7323 True 2738.0 5156 91.8415 1 3562 2 chr2D.!!$R2 3561
2 TraesCS2B01G121500 chr2A 57828998 57833083 4085 True 2699.5 4841 93.0650 1 3562 2 chr2A.!!$R2 3561
3 TraesCS2B01G121500 chr4D 300783379 300784003 624 False 351.0 351 76.9840 1041 1665 1 chr4D.!!$F1 624
4 TraesCS2B01G121500 chr4B 373981843 373982412 569 False 339.0 339 77.5650 1096 1665 1 chr4B.!!$F1 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
366 385 0.321919 GCTGATTGCTGTGTGGGAGA 60.322 55.000 0.00 0.0 38.95 3.71 F
1362 1385 1.071699 TCAGAACTTGTAGGCCACACC 59.928 52.381 5.01 0.0 36.69 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2184 2207 1.629043 TCAGGGGCCATATACTCGAC 58.371 55.000 4.39 0.0 0.0 4.20 R
3078 3108 1.666888 CCAACTTTCTCATTGCCGCAC 60.667 52.381 0.00 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.622701 AAAAGAATGCCGATGTTAGAGC 57.377 40.909 0.00 0.00 0.00 4.09
22 23 3.550437 AAGAATGCCGATGTTAGAGCT 57.450 42.857 0.00 0.00 0.00 4.09
24 25 2.432146 AGAATGCCGATGTTAGAGCTGA 59.568 45.455 0.00 0.00 0.00 4.26
25 26 3.070734 AGAATGCCGATGTTAGAGCTGAT 59.929 43.478 0.00 0.00 0.00 2.90
144 156 3.347216 TGCCTTTGTGCTCTAAGAATCC 58.653 45.455 10.84 0.00 0.00 3.01
145 157 3.244875 TGCCTTTGTGCTCTAAGAATCCA 60.245 43.478 10.84 1.67 0.00 3.41
146 158 3.127721 GCCTTTGTGCTCTAAGAATCCAC 59.872 47.826 10.84 0.00 0.00 4.02
366 385 0.321919 GCTGATTGCTGTGTGGGAGA 60.322 55.000 0.00 0.00 38.95 3.71
527 546 6.655425 AGTGAAGGTTTAAATCCTAGCAAGAC 59.345 38.462 9.01 2.89 34.56 3.01
795 817 1.470098 ACAGCAGCATCGTTTTGATCC 59.530 47.619 0.00 0.00 34.13 3.36
809 831 2.438434 ATCCGCCTTTTCGCAGGG 60.438 61.111 0.00 0.00 34.01 4.45
927 949 5.104776 AGCCTACTTGAGAATGCAATGTAGA 60.105 40.000 9.01 0.00 34.76 2.59
929 951 6.261826 GCCTACTTGAGAATGCAATGTAGAAT 59.738 38.462 9.01 0.00 34.76 2.40
1086 1109 3.372440 AAGACAATTCTCCCCATGGAC 57.628 47.619 15.22 0.00 35.03 4.02
1191 1214 5.297776 AGAACTTTGTGTTGTTGATCCAGAG 59.702 40.000 0.00 0.00 39.30 3.35
1362 1385 1.071699 TCAGAACTTGTAGGCCACACC 59.928 52.381 5.01 0.00 36.69 4.16
1699 1722 1.990799 TTGTCATCTCTACGTTGGCG 58.009 50.000 0.00 0.00 44.93 5.69
2068 2091 2.350388 CCAACAATCCCGTTTTGTCTCG 60.350 50.000 0.00 0.00 36.32 4.04
2074 2097 1.409790 TCCCGTTTTGTCTCGTCTTCA 59.590 47.619 0.00 0.00 0.00 3.02
2077 2100 2.471743 CCGTTTTGTCTCGTCTTCAGTC 59.528 50.000 0.00 0.00 0.00 3.51
2184 2207 1.069703 CAAACTCGATGTGTGGCACTG 60.070 52.381 19.83 0.24 35.11 3.66
2495 2518 2.157085 GCTGAAAGGAGTACGTTTTCCG 59.843 50.000 11.10 4.99 44.03 4.30
2519 2542 7.201461 CCGGCTTGTTTGATTTCATTATTCTTG 60.201 37.037 0.00 0.00 0.00 3.02
2520 2543 7.329226 CGGCTTGTTTGATTTCATTATTCTTGT 59.671 33.333 0.00 0.00 0.00 3.16
2540 2563 6.607600 TCTTGTAGGAGTAACTCATAGCACAT 59.392 38.462 0.00 0.00 27.20 3.21
2586 2609 5.094134 CCAAACAAAACAAAAACAGCATGG 58.906 37.500 0.00 0.00 43.62 3.66
2599 2622 0.905809 AGCATGGGAGCAAATTGGCA 60.906 50.000 7.75 0.00 36.85 4.92
2755 2780 4.770362 TGGACGCCCGGGAGATCA 62.770 66.667 32.59 23.31 34.29 2.92
2819 2844 0.179094 AACTTCGACGTGTGCTGGAA 60.179 50.000 0.00 0.00 0.00 3.53
3011 3041 3.171277 GCGCGCAATTTTGATCTAGTTT 58.829 40.909 29.10 0.00 0.00 2.66
3039 3069 4.528596 ACTGAACTACTGTGTTCTATGGCT 59.471 41.667 17.60 0.67 44.63 4.75
3070 3100 8.309656 TGATGTATATCGATTCTTCTGCATCTT 58.690 33.333 1.71 0.00 36.04 2.40
3091 3121 1.006086 CATTACGTGCGGCAATGAGA 58.994 50.000 3.23 0.00 32.54 3.27
3100 3130 1.135575 GCGGCAATGAGAAAGTTGGAG 60.136 52.381 0.00 0.00 0.00 3.86
3106 3136 4.516698 GCAATGAGAAAGTTGGAGACAGAA 59.483 41.667 0.00 0.00 44.54 3.02
3115 3145 5.036117 AGTTGGAGACAGAAAGCAACTAA 57.964 39.130 0.00 0.00 44.54 2.24
3125 3155 7.880195 AGACAGAAAGCAACTAACAATATCTGT 59.120 33.333 4.44 4.44 45.38 3.41
3126 3156 8.034058 ACAGAAAGCAACTAACAATATCTGTC 57.966 34.615 0.00 0.00 40.51 3.51
3133 3163 6.019801 GCAACTAACAATATCTGTCAGTACGG 60.020 42.308 0.00 0.00 37.23 4.02
3144 3174 3.693807 TGTCAGTACGGATTGGTAGAGT 58.306 45.455 0.00 0.00 0.00 3.24
3145 3175 4.847198 TGTCAGTACGGATTGGTAGAGTA 58.153 43.478 0.00 0.00 0.00 2.59
3199 6845 7.143340 TGAAAGTTGAGAAGCATGAATTTCTG 58.857 34.615 10.94 0.00 33.97 3.02
3212 6858 6.020121 GCATGAATTTCTGAAACCAATGATCG 60.020 38.462 17.85 0.00 0.00 3.69
3239 6885 6.146184 CGTGAGCTGAAACTTTCTCAGATTAA 59.854 38.462 0.00 0.00 39.56 1.40
3244 6890 8.891720 AGCTGAAACTTTCTCAGATTAATCATC 58.108 33.333 17.56 0.00 42.51 2.92
3272 6918 6.183360 TGCATTCTTCAGTTTCTGGGATTTTT 60.183 34.615 0.00 0.00 31.51 1.94
3337 7222 7.254852 TCAGTCAAATTTTGAAGCTAAACGTT 58.745 30.769 13.21 0.00 42.15 3.99
3392 7279 5.617751 CGTTAGCTGAAAGTTTCCCAGATTG 60.618 44.000 13.01 0.00 35.30 2.67
3436 7323 9.440784 CAATTTGTGGAATTGTTTCAGAATTTG 57.559 29.630 3.88 2.94 46.16 2.32
3468 7355 6.295719 TGAACCTTCATAACTCTTCCTACC 57.704 41.667 0.00 0.00 31.01 3.18
3469 7356 5.189145 TGAACCTTCATAACTCTTCCTACCC 59.811 44.000 0.00 0.00 31.01 3.69
3471 7358 4.470304 ACCTTCATAACTCTTCCTACCCAC 59.530 45.833 0.00 0.00 0.00 4.61
3480 7367 3.892588 CTCTTCCTACCCACAGTCCTATC 59.107 52.174 0.00 0.00 0.00 2.08
3551 7445 1.134098 ACCATACCAGGGCTCAAATCG 60.134 52.381 0.00 0.00 0.00 3.34
3562 7456 2.939103 GGCTCAAATCGAAGCACATACT 59.061 45.455 8.94 0.00 0.00 2.12
3563 7457 3.375299 GGCTCAAATCGAAGCACATACTT 59.625 43.478 8.94 0.00 0.00 2.24
3564 7458 4.494855 GGCTCAAATCGAAGCACATACTTC 60.495 45.833 8.94 0.00 42.20 3.01
3565 7459 4.494855 GCTCAAATCGAAGCACATACTTCC 60.495 45.833 1.96 0.00 42.57 3.46
3566 7460 4.832248 TCAAATCGAAGCACATACTTCCT 58.168 39.130 0.00 0.00 42.57 3.36
3567 7461 4.870426 TCAAATCGAAGCACATACTTCCTC 59.130 41.667 0.00 0.00 42.57 3.71
3568 7462 2.961526 TCGAAGCACATACTTCCTCC 57.038 50.000 0.00 0.00 42.57 4.30
3569 7463 2.176045 TCGAAGCACATACTTCCTCCA 58.824 47.619 0.00 0.00 42.57 3.86
3570 7464 2.766263 TCGAAGCACATACTTCCTCCAT 59.234 45.455 0.00 0.00 42.57 3.41
3571 7465 3.197766 TCGAAGCACATACTTCCTCCATT 59.802 43.478 0.00 0.00 42.57 3.16
3572 7466 3.557595 CGAAGCACATACTTCCTCCATTC 59.442 47.826 0.00 0.00 42.57 2.67
3573 7467 3.567478 AGCACATACTTCCTCCATTCC 57.433 47.619 0.00 0.00 0.00 3.01
3574 7468 3.118531 AGCACATACTTCCTCCATTCCT 58.881 45.455 0.00 0.00 0.00 3.36
3575 7469 4.298626 AGCACATACTTCCTCCATTCCTA 58.701 43.478 0.00 0.00 0.00 2.94
3576 7470 4.721776 AGCACATACTTCCTCCATTCCTAA 59.278 41.667 0.00 0.00 0.00 2.69
3577 7471 5.191722 AGCACATACTTCCTCCATTCCTAAA 59.808 40.000 0.00 0.00 0.00 1.85
3578 7472 6.064717 GCACATACTTCCTCCATTCCTAAAT 58.935 40.000 0.00 0.00 0.00 1.40
3579 7473 7.072454 AGCACATACTTCCTCCATTCCTAAATA 59.928 37.037 0.00 0.00 0.00 1.40
3580 7474 7.173390 GCACATACTTCCTCCATTCCTAAATAC 59.827 40.741 0.00 0.00 0.00 1.89
3581 7475 8.432805 CACATACTTCCTCCATTCCTAAATACT 58.567 37.037 0.00 0.00 0.00 2.12
3582 7476 9.004231 ACATACTTCCTCCATTCCTAAATACTT 57.996 33.333 0.00 0.00 0.00 2.24
3583 7477 9.277783 CATACTTCCTCCATTCCTAAATACTTG 57.722 37.037 0.00 0.00 0.00 3.16
3584 7478 7.272144 ACTTCCTCCATTCCTAAATACTTGT 57.728 36.000 0.00 0.00 0.00 3.16
3585 7479 7.339482 ACTTCCTCCATTCCTAAATACTTGTC 58.661 38.462 0.00 0.00 0.00 3.18
3586 7480 7.182930 ACTTCCTCCATTCCTAAATACTTGTCT 59.817 37.037 0.00 0.00 0.00 3.41
3587 7481 7.510675 TCCTCCATTCCTAAATACTTGTCTT 57.489 36.000 0.00 0.00 0.00 3.01
3588 7482 7.928873 TCCTCCATTCCTAAATACTTGTCTTT 58.071 34.615 0.00 0.00 0.00 2.52
3589 7483 8.047310 TCCTCCATTCCTAAATACTTGTCTTTC 58.953 37.037 0.00 0.00 0.00 2.62
3590 7484 8.049721 CCTCCATTCCTAAATACTTGTCTTTCT 58.950 37.037 0.00 0.00 0.00 2.52
3604 7498 8.964476 ACTTGTCTTTCTAGAGATTTCAACAA 57.036 30.769 0.00 0.00 0.00 2.83
3605 7499 9.050601 ACTTGTCTTTCTAGAGATTTCAACAAG 57.949 33.333 18.42 18.42 32.73 3.16
3606 7500 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3607 7501 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
3608 7502 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
3609 7503 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
3610 7504 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
3611 7505 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
3612 7506 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
3613 7507 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
3614 7508 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
3616 7510 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3617 7511 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
3618 7512 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
3619 7513 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3620 7514 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3621 7515 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3622 7516 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3623 7517 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3624 7518 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3625 7519 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3626 7520 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3627 7521 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3628 7522 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3629 7523 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3630 7524 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3631 7525 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3632 7526 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3633 7527 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3634 7528 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3635 7529 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3636 7530 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3637 7531 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3638 7532 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3639 7533 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3640 7534 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3655 7549 9.817809 GTGAATCTACACTCTAAAATATGTCCA 57.182 33.333 0.00 0.00 37.73 4.02
3718 7612 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
3719 7613 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3720 7614 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3721 7615 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3722 7616 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
3723 7617 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
3724 7618 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
3725 7619 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
3726 7620 2.905415 TAGGAACGGAGGGAGTACAA 57.095 50.000 0.00 0.00 0.00 2.41
3727 7621 1.264295 AGGAACGGAGGGAGTACAAC 58.736 55.000 0.00 0.00 0.00 3.32
3728 7622 0.971386 GGAACGGAGGGAGTACAACA 59.029 55.000 0.00 0.00 0.00 3.33
3729 7623 1.337541 GGAACGGAGGGAGTACAACAC 60.338 57.143 0.00 0.00 0.00 3.32
3730 7624 1.342174 GAACGGAGGGAGTACAACACA 59.658 52.381 0.00 0.00 0.00 3.72
3731 7625 1.640917 ACGGAGGGAGTACAACACAT 58.359 50.000 0.00 0.00 0.00 3.21
3732 7626 1.275291 ACGGAGGGAGTACAACACATG 59.725 52.381 0.00 0.00 0.00 3.21
3733 7627 1.405526 CGGAGGGAGTACAACACATGG 60.406 57.143 0.00 0.00 0.00 3.66
3734 7628 1.906574 GGAGGGAGTACAACACATGGA 59.093 52.381 0.00 0.00 0.00 3.41
3735 7629 2.093447 GGAGGGAGTACAACACATGGAG 60.093 54.545 0.00 0.00 0.00 3.86
3736 7630 2.832129 GAGGGAGTACAACACATGGAGA 59.168 50.000 0.00 0.00 0.00 3.71
3737 7631 3.248024 AGGGAGTACAACACATGGAGAA 58.752 45.455 0.00 0.00 0.00 2.87
3738 7632 3.846588 AGGGAGTACAACACATGGAGAAT 59.153 43.478 0.00 0.00 0.00 2.40
3739 7633 4.080863 AGGGAGTACAACACATGGAGAATC 60.081 45.833 0.00 0.00 0.00 2.52
3740 7634 4.323485 GGGAGTACAACACATGGAGAATCA 60.323 45.833 0.00 0.00 36.25 2.57
3741 7635 5.245531 GGAGTACAACACATGGAGAATCAA 58.754 41.667 0.00 0.00 36.25 2.57
3742 7636 5.122396 GGAGTACAACACATGGAGAATCAAC 59.878 44.000 0.00 0.00 36.25 3.18
3743 7637 5.003804 AGTACAACACATGGAGAATCAACC 58.996 41.667 0.00 0.00 36.25 3.77
3744 7638 4.104383 ACAACACATGGAGAATCAACCT 57.896 40.909 0.00 0.00 36.25 3.50
3745 7639 4.074970 ACAACACATGGAGAATCAACCTC 58.925 43.478 0.00 0.00 36.25 3.85
3756 7650 5.988287 GAGAATCAACCTCCAGAATCTTCT 58.012 41.667 0.00 0.00 34.07 2.85
3757 7651 6.385766 AGAATCAACCTCCAGAATCTTCTT 57.614 37.500 0.00 0.00 34.74 2.52
3758 7652 6.179040 AGAATCAACCTCCAGAATCTTCTTG 58.821 40.000 0.00 0.00 34.74 3.02
3759 7653 3.679389 TCAACCTCCAGAATCTTCTTGC 58.321 45.455 0.00 0.00 34.74 4.01
3760 7654 2.751806 CAACCTCCAGAATCTTCTTGCC 59.248 50.000 0.00 0.00 34.74 4.52
3761 7655 2.273619 ACCTCCAGAATCTTCTTGCCT 58.726 47.619 0.00 0.00 34.74 4.75
3762 7656 3.454858 ACCTCCAGAATCTTCTTGCCTA 58.545 45.455 0.00 0.00 34.74 3.93
3763 7657 3.198853 ACCTCCAGAATCTTCTTGCCTAC 59.801 47.826 0.00 0.00 34.74 3.18
3764 7658 3.454082 CCTCCAGAATCTTCTTGCCTACT 59.546 47.826 0.00 0.00 34.74 2.57
3765 7659 4.440880 CTCCAGAATCTTCTTGCCTACTG 58.559 47.826 0.00 0.00 34.74 2.74
3766 7660 2.941720 CCAGAATCTTCTTGCCTACTGC 59.058 50.000 0.00 0.00 34.74 4.40
3767 7661 2.941720 CAGAATCTTCTTGCCTACTGCC 59.058 50.000 0.00 0.00 35.42 4.85
3768 7662 1.936547 GAATCTTCTTGCCTACTGCCG 59.063 52.381 0.00 0.00 40.16 5.69
3769 7663 0.905357 ATCTTCTTGCCTACTGCCGT 59.095 50.000 0.00 0.00 40.16 5.68
3770 7664 1.552578 TCTTCTTGCCTACTGCCGTA 58.447 50.000 0.00 0.00 40.16 4.02
3771 7665 1.203994 TCTTCTTGCCTACTGCCGTAC 59.796 52.381 0.00 0.00 40.16 3.67
3772 7666 1.204941 CTTCTTGCCTACTGCCGTACT 59.795 52.381 0.00 0.00 40.16 2.73
3773 7667 0.530744 TCTTGCCTACTGCCGTACTG 59.469 55.000 0.00 0.00 40.16 2.74
3774 7668 0.530744 CTTGCCTACTGCCGTACTGA 59.469 55.000 0.00 0.00 40.16 3.41
3775 7669 0.245539 TTGCCTACTGCCGTACTGAC 59.754 55.000 0.00 0.00 40.16 3.51
3776 7670 0.896479 TGCCTACTGCCGTACTGACA 60.896 55.000 0.00 0.00 40.16 3.58
3777 7671 0.460311 GCCTACTGCCGTACTGACAT 59.540 55.000 0.00 0.00 0.00 3.06
3778 7672 1.679680 GCCTACTGCCGTACTGACATA 59.320 52.381 0.00 0.00 0.00 2.29
3779 7673 2.100252 GCCTACTGCCGTACTGACATAA 59.900 50.000 0.00 0.00 0.00 1.90
3780 7674 3.243771 GCCTACTGCCGTACTGACATAAT 60.244 47.826 0.00 0.00 0.00 1.28
3781 7675 4.022589 GCCTACTGCCGTACTGACATAATA 60.023 45.833 0.00 0.00 0.00 0.98
3782 7676 5.508489 GCCTACTGCCGTACTGACATAATAA 60.508 44.000 0.00 0.00 0.00 1.40
3783 7677 6.688578 CCTACTGCCGTACTGACATAATAAT 58.311 40.000 0.00 0.00 0.00 1.28
3784 7678 7.576287 GCCTACTGCCGTACTGACATAATAATA 60.576 40.741 0.00 0.00 0.00 0.98
3785 7679 8.467598 CCTACTGCCGTACTGACATAATAATAT 58.532 37.037 0.00 0.00 0.00 1.28
3786 7680 9.856488 CTACTGCCGTACTGACATAATAATATT 57.144 33.333 0.00 0.00 0.00 1.28
3787 7681 8.534333 ACTGCCGTACTGACATAATAATATTG 57.466 34.615 0.00 0.00 0.00 1.90
3788 7682 8.364894 ACTGCCGTACTGACATAATAATATTGA 58.635 33.333 0.00 0.00 0.00 2.57
3789 7683 8.528917 TGCCGTACTGACATAATAATATTGAC 57.471 34.615 0.00 0.00 0.00 3.18
3790 7684 7.601130 TGCCGTACTGACATAATAATATTGACC 59.399 37.037 0.00 0.00 0.00 4.02
3791 7685 7.817962 GCCGTACTGACATAATAATATTGACCT 59.182 37.037 0.00 0.00 0.00 3.85
3792 7686 9.355215 CCGTACTGACATAATAATATTGACCTC 57.645 37.037 0.00 0.00 0.00 3.85
3793 7687 9.908152 CGTACTGACATAATAATATTGACCTCA 57.092 33.333 0.00 0.00 0.00 3.86
3811 7705 9.513906 TTGACCTCAACAGAAATATCAATAACA 57.486 29.630 0.00 0.00 0.00 2.41
3812 7706 9.685276 TGACCTCAACAGAAATATCAATAACAT 57.315 29.630 0.00 0.00 0.00 2.71
3814 7708 9.685276 ACCTCAACAGAAATATCAATAACATCA 57.315 29.630 0.00 0.00 0.00 3.07
3832 7726 7.510428 AACATCAAATACTTGCTTTAATGCG 57.490 32.000 8.62 0.00 35.36 4.73
3833 7727 6.620678 ACATCAAATACTTGCTTTAATGCGT 58.379 32.000 8.62 4.43 35.36 5.24
3834 7728 7.090173 ACATCAAATACTTGCTTTAATGCGTT 58.910 30.769 8.62 0.00 35.36 4.84
3835 7729 7.598493 ACATCAAATACTTGCTTTAATGCGTTT 59.402 29.630 8.62 2.96 35.36 3.60
3836 7730 7.561237 TCAAATACTTGCTTTAATGCGTTTC 57.439 32.000 8.62 0.00 35.36 2.78
3837 7731 7.367285 TCAAATACTTGCTTTAATGCGTTTCT 58.633 30.769 8.62 0.00 35.36 2.52
3838 7732 7.537306 TCAAATACTTGCTTTAATGCGTTTCTC 59.463 33.333 8.62 0.00 35.36 2.87
3839 7733 3.810373 ACTTGCTTTAATGCGTTTCTCG 58.190 40.909 8.62 0.00 43.12 4.04
3853 7747 5.018695 CGTTTCTCGCTGTGAATTAAACT 57.981 39.130 15.43 0.00 0.00 2.66
3854 7748 6.148270 CGTTTCTCGCTGTGAATTAAACTA 57.852 37.500 15.43 0.00 0.00 2.24
3855 7749 6.007677 CGTTTCTCGCTGTGAATTAAACTAC 58.992 40.000 15.43 0.00 0.00 2.73
3856 7750 6.346279 CGTTTCTCGCTGTGAATTAAACTACA 60.346 38.462 15.43 0.00 0.00 2.74
3857 7751 6.706055 TTCTCGCTGTGAATTAAACTACAG 57.294 37.500 10.34 10.34 42.51 2.74
3858 7752 5.168569 TCTCGCTGTGAATTAAACTACAGG 58.831 41.667 14.34 7.77 40.55 4.00
3859 7753 4.890088 TCGCTGTGAATTAAACTACAGGT 58.110 39.130 14.34 0.00 40.55 4.00
3860 7754 5.302360 TCGCTGTGAATTAAACTACAGGTT 58.698 37.500 14.34 0.00 40.55 3.50
3861 7755 5.178623 TCGCTGTGAATTAAACTACAGGTTG 59.821 40.000 14.34 0.00 40.55 3.77
3862 7756 5.616866 CGCTGTGAATTAAACTACAGGTTGG 60.617 44.000 14.34 0.00 40.55 3.77
3863 7757 5.472137 GCTGTGAATTAAACTACAGGTTGGA 59.528 40.000 14.34 0.00 40.55 3.53
3864 7758 6.016610 GCTGTGAATTAAACTACAGGTTGGAA 60.017 38.462 14.34 0.00 40.55 3.53
3865 7759 7.309194 GCTGTGAATTAAACTACAGGTTGGAAT 60.309 37.037 14.34 0.00 40.55 3.01
3866 7760 8.472007 TGTGAATTAAACTACAGGTTGGAATT 57.528 30.769 0.00 0.00 38.29 2.17
3867 7761 8.573035 TGTGAATTAAACTACAGGTTGGAATTC 58.427 33.333 14.98 14.98 43.04 2.17
3868 7762 8.573035 GTGAATTAAACTACAGGTTGGAATTCA 58.427 33.333 17.82 17.82 45.78 2.57
3869 7763 9.308000 TGAATTAAACTACAGGTTGGAATTCAT 57.692 29.630 17.82 0.00 44.74 2.57
3870 7764 9.573133 GAATTAAACTACAGGTTGGAATTCATG 57.427 33.333 7.93 0.57 42.73 3.07
3871 7765 5.982890 AAACTACAGGTTGGAATTCATGG 57.017 39.130 7.93 0.00 38.29 3.66
3872 7766 3.356290 ACTACAGGTTGGAATTCATGGC 58.644 45.455 7.93 0.00 0.00 4.40
3873 7767 1.560505 ACAGGTTGGAATTCATGGCC 58.439 50.000 7.93 0.00 0.00 5.36
3874 7768 0.826062 CAGGTTGGAATTCATGGCCC 59.174 55.000 7.93 0.00 0.00 5.80
3875 7769 0.413037 AGGTTGGAATTCATGGCCCA 59.587 50.000 7.93 0.00 0.00 5.36
3876 7770 1.203288 AGGTTGGAATTCATGGCCCAA 60.203 47.619 7.93 0.00 36.43 4.12
3877 7771 1.627834 GGTTGGAATTCATGGCCCAAA 59.372 47.619 7.93 0.00 40.00 3.28
3878 7772 2.615240 GGTTGGAATTCATGGCCCAAAC 60.615 50.000 7.93 0.56 40.00 2.93
3879 7773 2.021262 TGGAATTCATGGCCCAAACA 57.979 45.000 7.93 0.00 0.00 2.83
3880 7774 2.333069 TGGAATTCATGGCCCAAACAA 58.667 42.857 7.93 0.00 0.00 2.83
3881 7775 2.707791 TGGAATTCATGGCCCAAACAAA 59.292 40.909 7.93 0.00 0.00 2.83
3882 7776 3.073678 GGAATTCATGGCCCAAACAAAC 58.926 45.455 7.93 0.00 0.00 2.93
3883 7777 2.453983 ATTCATGGCCCAAACAAACG 57.546 45.000 0.00 0.00 0.00 3.60
3884 7778 0.249657 TTCATGGCCCAAACAAACGC 60.250 50.000 0.00 0.00 0.00 4.84
3885 7779 1.068753 CATGGCCCAAACAAACGCA 59.931 52.632 0.00 0.00 0.00 5.24
3886 7780 0.945265 CATGGCCCAAACAAACGCAG 60.945 55.000 0.00 0.00 0.00 5.18
3887 7781 2.028925 GGCCCAAACAAACGCAGG 59.971 61.111 0.00 0.00 0.00 4.85
3888 7782 2.791868 GGCCCAAACAAACGCAGGT 61.792 57.895 0.00 0.00 0.00 4.00
3889 7783 1.591327 GCCCAAACAAACGCAGGTG 60.591 57.895 0.00 0.00 0.00 4.00
3890 7784 2.010582 GCCCAAACAAACGCAGGTGA 62.011 55.000 0.00 0.00 0.00 4.02
3891 7785 0.457851 CCCAAACAAACGCAGGTGAA 59.542 50.000 0.00 0.00 0.00 3.18
3892 7786 1.535860 CCCAAACAAACGCAGGTGAAG 60.536 52.381 0.00 0.00 0.00 3.02
3893 7787 1.403679 CCAAACAAACGCAGGTGAAGA 59.596 47.619 0.00 0.00 0.00 2.87
3894 7788 2.034558 CCAAACAAACGCAGGTGAAGAT 59.965 45.455 0.00 0.00 0.00 2.40
3895 7789 3.252215 CCAAACAAACGCAGGTGAAGATA 59.748 43.478 0.00 0.00 0.00 1.98
3896 7790 4.261405 CCAAACAAACGCAGGTGAAGATAA 60.261 41.667 0.00 0.00 0.00 1.75
3897 7791 4.749245 AACAAACGCAGGTGAAGATAAG 57.251 40.909 0.00 0.00 0.00 1.73
3898 7792 3.074412 ACAAACGCAGGTGAAGATAAGG 58.926 45.455 0.00 0.00 0.00 2.69
3899 7793 2.403252 AACGCAGGTGAAGATAAGGG 57.597 50.000 0.00 0.00 0.00 3.95
3900 7794 0.541863 ACGCAGGTGAAGATAAGGGG 59.458 55.000 0.00 0.00 0.00 4.79
3901 7795 0.179045 CGCAGGTGAAGATAAGGGGG 60.179 60.000 0.00 0.00 0.00 5.40
3902 7796 0.919710 GCAGGTGAAGATAAGGGGGT 59.080 55.000 0.00 0.00 0.00 4.95
3903 7797 1.408822 GCAGGTGAAGATAAGGGGGTG 60.409 57.143 0.00 0.00 0.00 4.61
3904 7798 1.916181 CAGGTGAAGATAAGGGGGTGT 59.084 52.381 0.00 0.00 0.00 4.16
3905 7799 1.916181 AGGTGAAGATAAGGGGGTGTG 59.084 52.381 0.00 0.00 0.00 3.82
3906 7800 1.913419 GGTGAAGATAAGGGGGTGTGA 59.087 52.381 0.00 0.00 0.00 3.58
3907 7801 2.092914 GGTGAAGATAAGGGGGTGTGAG 60.093 54.545 0.00 0.00 0.00 3.51
3908 7802 2.572104 GTGAAGATAAGGGGGTGTGAGT 59.428 50.000 0.00 0.00 0.00 3.41
3909 7803 2.838202 TGAAGATAAGGGGGTGTGAGTC 59.162 50.000 0.00 0.00 0.00 3.36
3910 7804 2.642171 AGATAAGGGGGTGTGAGTCA 57.358 50.000 0.00 0.00 0.00 3.41
3911 7805 3.136641 AGATAAGGGGGTGTGAGTCAT 57.863 47.619 0.00 0.00 0.00 3.06
3912 7806 2.774234 AGATAAGGGGGTGTGAGTCATG 59.226 50.000 0.00 0.00 0.00 3.07
3913 7807 1.285280 TAAGGGGGTGTGAGTCATGG 58.715 55.000 0.00 0.00 0.00 3.66
3914 7808 0.475632 AAGGGGGTGTGAGTCATGGA 60.476 55.000 0.00 0.00 0.00 3.41
3915 7809 0.475632 AGGGGGTGTGAGTCATGGAA 60.476 55.000 0.00 0.00 0.00 3.53
3916 7810 0.404040 GGGGGTGTGAGTCATGGAAA 59.596 55.000 0.00 0.00 0.00 3.13
3917 7811 1.203001 GGGGGTGTGAGTCATGGAAAA 60.203 52.381 0.00 0.00 0.00 2.29
3918 7812 1.886542 GGGGTGTGAGTCATGGAAAAC 59.113 52.381 0.00 0.00 0.00 2.43
3919 7813 2.489073 GGGGTGTGAGTCATGGAAAACT 60.489 50.000 0.00 0.00 0.00 2.66
3920 7814 3.222603 GGGTGTGAGTCATGGAAAACTT 58.777 45.455 0.00 0.00 0.00 2.66
3921 7815 4.394729 GGGTGTGAGTCATGGAAAACTTA 58.605 43.478 0.00 0.00 0.00 2.24
3922 7816 4.455877 GGGTGTGAGTCATGGAAAACTTAG 59.544 45.833 0.00 0.00 0.00 2.18
3923 7817 4.455877 GGTGTGAGTCATGGAAAACTTAGG 59.544 45.833 0.00 0.00 0.00 2.69
3924 7818 5.305585 GTGTGAGTCATGGAAAACTTAGGA 58.694 41.667 0.00 0.00 0.00 2.94
3925 7819 5.409826 GTGTGAGTCATGGAAAACTTAGGAG 59.590 44.000 0.00 0.00 0.00 3.69
3926 7820 4.393371 GTGAGTCATGGAAAACTTAGGAGC 59.607 45.833 0.00 0.00 0.00 4.70
3927 7821 3.942115 GAGTCATGGAAAACTTAGGAGCC 59.058 47.826 0.00 0.00 0.00 4.70
3928 7822 3.330701 AGTCATGGAAAACTTAGGAGCCA 59.669 43.478 0.00 0.00 0.00 4.75
3929 7823 4.018050 AGTCATGGAAAACTTAGGAGCCAT 60.018 41.667 0.00 0.00 36.62 4.40
3930 7824 5.191722 AGTCATGGAAAACTTAGGAGCCATA 59.808 40.000 0.00 0.00 34.57 2.74
3931 7825 5.885912 GTCATGGAAAACTTAGGAGCCATAA 59.114 40.000 0.00 0.00 34.57 1.90
3932 7826 6.377146 GTCATGGAAAACTTAGGAGCCATAAA 59.623 38.462 0.00 0.00 34.57 1.40
3933 7827 6.951198 TCATGGAAAACTTAGGAGCCATAAAA 59.049 34.615 0.00 0.00 34.57 1.52
3934 7828 7.453126 TCATGGAAAACTTAGGAGCCATAAAAA 59.547 33.333 0.00 0.00 34.57 1.94
3935 7829 7.227049 TGGAAAACTTAGGAGCCATAAAAAG 57.773 36.000 0.00 0.00 0.00 2.27
3936 7830 7.007723 TGGAAAACTTAGGAGCCATAAAAAGA 58.992 34.615 0.00 0.00 0.00 2.52
3937 7831 7.507616 TGGAAAACTTAGGAGCCATAAAAAGAA 59.492 33.333 0.00 0.00 0.00 2.52
3938 7832 8.364894 GGAAAACTTAGGAGCCATAAAAAGAAA 58.635 33.333 0.00 0.00 0.00 2.52
3939 7833 9.193133 GAAAACTTAGGAGCCATAAAAAGAAAC 57.807 33.333 0.00 0.00 0.00 2.78
3940 7834 6.496338 ACTTAGGAGCCATAAAAAGAAACG 57.504 37.500 0.00 0.00 0.00 3.60
3941 7835 5.414765 ACTTAGGAGCCATAAAAAGAAACGG 59.585 40.000 0.00 0.00 0.00 4.44
3942 7836 2.492088 AGGAGCCATAAAAAGAAACGGC 59.508 45.455 0.00 0.00 39.90 5.68
3943 7837 2.230266 GGAGCCATAAAAAGAAACGGCA 59.770 45.455 0.00 0.00 42.10 5.69
3944 7838 3.242518 GAGCCATAAAAAGAAACGGCAC 58.757 45.455 0.00 0.00 42.10 5.01
3945 7839 2.890945 AGCCATAAAAAGAAACGGCACT 59.109 40.909 0.00 0.00 42.10 4.40
3946 7840 3.320826 AGCCATAAAAAGAAACGGCACTT 59.679 39.130 0.00 0.00 42.10 3.16
3947 7841 4.055360 GCCATAAAAAGAAACGGCACTTT 58.945 39.130 0.00 0.00 39.38 2.66
3948 7842 4.509970 GCCATAAAAAGAAACGGCACTTTT 59.490 37.500 0.00 0.00 44.60 2.27
3949 7843 5.558083 GCCATAAAAAGAAACGGCACTTTTG 60.558 40.000 13.35 5.59 42.80 2.44
3950 7844 5.522097 CCATAAAAAGAAACGGCACTTTTGT 59.478 36.000 13.35 8.52 42.80 2.83
3951 7845 6.292114 CCATAAAAAGAAACGGCACTTTTGTC 60.292 38.462 13.35 0.00 42.80 3.18
3952 7846 4.450082 AAAAGAAACGGCACTTTTGTCT 57.550 36.364 12.36 0.00 42.28 3.41
3953 7847 5.570234 AAAAGAAACGGCACTTTTGTCTA 57.430 34.783 12.36 0.00 42.28 2.59
3954 7848 5.570234 AAAGAAACGGCACTTTTGTCTAA 57.430 34.783 0.00 0.00 33.36 2.10
3955 7849 5.767816 AAGAAACGGCACTTTTGTCTAAT 57.232 34.783 0.00 0.00 27.14 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.432146 TCAGCTCTAACATCGGCATTCT 59.568 45.455 0.00 0.00 0.00 2.40
15 16 4.021456 TCAACACCTCGAAATCAGCTCTAA 60.021 41.667 0.00 0.00 0.00 2.10
19 20 2.808543 GTTCAACACCTCGAAATCAGCT 59.191 45.455 0.00 0.00 0.00 4.24
20 21 2.548057 TGTTCAACACCTCGAAATCAGC 59.452 45.455 0.00 0.00 0.00 4.26
21 22 5.446473 GCTATGTTCAACACCTCGAAATCAG 60.446 44.000 0.00 0.00 0.00 2.90
22 23 4.391830 GCTATGTTCAACACCTCGAAATCA 59.608 41.667 0.00 0.00 0.00 2.57
24 25 3.370978 CGCTATGTTCAACACCTCGAAAT 59.629 43.478 0.00 0.00 0.00 2.17
25 26 2.734606 CGCTATGTTCAACACCTCGAAA 59.265 45.455 0.00 0.00 0.00 3.46
144 156 9.495572 AAGATTTCTAGAAAGTTACTTCCAGTG 57.504 33.333 21.75 0.00 33.32 3.66
366 385 3.618351 CTCTCACTGGCCTCATTTGAAT 58.382 45.455 3.32 0.00 0.00 2.57
795 817 0.953960 AAGTACCCTGCGAAAAGGCG 60.954 55.000 0.00 0.00 35.85 5.52
809 831 4.523083 TCCACTATGAATTGCCCAAGTAC 58.477 43.478 0.00 0.00 0.00 2.73
927 949 9.778741 TCAACTTACTGAAACTAATGACTCATT 57.221 29.630 9.26 9.26 37.80 2.57
929 951 8.638873 TCTCAACTTACTGAAACTAATGACTCA 58.361 33.333 0.00 0.00 0.00 3.41
1362 1385 6.944234 AGGTTAAGTTCCTTTTCTTCTGTG 57.056 37.500 0.00 0.00 30.18 3.66
2074 2097 6.315642 CACAAGCAAATAGATGTCAGATGACT 59.684 38.462 13.74 0.29 44.99 3.41
2077 2100 5.271625 GCACAAGCAAATAGATGTCAGATG 58.728 41.667 0.00 0.00 41.58 2.90
2184 2207 1.629043 TCAGGGGCCATATACTCGAC 58.371 55.000 4.39 0.00 0.00 4.20
2495 2518 8.538409 ACAAGAATAATGAAATCAAACAAGCC 57.462 30.769 0.00 0.00 0.00 4.35
2519 2542 9.233649 ACTATATGTGCTATGAGTTACTCCTAC 57.766 37.037 10.10 2.89 0.00 3.18
2540 2563 7.589081 TGGAAAGACCTCTACATGGTACTATA 58.411 38.462 0.00 0.00 38.03 1.31
2586 2609 2.232208 AGTTAAGCTGCCAATTTGCTCC 59.768 45.455 2.90 0.00 35.85 4.70
2781 2806 4.783621 GCGATGCAGGTCAGGCCA 62.784 66.667 5.01 0.00 40.61 5.36
2957 2986 2.065993 GCACTGAGCGAGTCTTACAA 57.934 50.000 0.00 0.00 29.75 2.41
3024 3054 5.420725 TCATACAAGCCATAGAACACAGT 57.579 39.130 0.00 0.00 0.00 3.55
3039 3069 9.358872 GCAGAAGAATCGATATACATCATACAA 57.641 33.333 0.00 0.00 0.00 2.41
3073 3103 1.732941 TTCTCATTGCCGCACGTAAT 58.267 45.000 0.00 0.00 0.00 1.89
3078 3108 1.666888 CCAACTTTCTCATTGCCGCAC 60.667 52.381 0.00 0.00 0.00 5.34
3091 3121 4.273318 AGTTGCTTTCTGTCTCCAACTTT 58.727 39.130 0.00 0.00 42.26 2.66
3100 3130 8.034058 ACAGATATTGTTAGTTGCTTTCTGTC 57.966 34.615 0.00 0.00 37.35 3.51
3115 3145 5.128827 ACCAATCCGTACTGACAGATATTGT 59.871 40.000 10.08 0.00 44.55 2.71
3125 3155 5.108187 AGTACTCTACCAATCCGTACTGA 57.892 43.478 0.00 0.00 39.26 3.41
3126 3156 6.238593 GGTTAGTACTCTACCAATCCGTACTG 60.239 46.154 17.85 0.00 40.47 2.74
3133 3163 7.562135 TGGATTTGGTTAGTACTCTACCAATC 58.438 38.462 29.05 25.78 37.28 2.67
3139 3169 7.179966 TCTGACTGGATTTGGTTAGTACTCTA 58.820 38.462 0.00 0.00 0.00 2.43
3140 3170 6.017192 TCTGACTGGATTTGGTTAGTACTCT 58.983 40.000 0.00 0.00 0.00 3.24
3144 3174 8.160765 TCAAAATCTGACTGGATTTGGTTAGTA 58.839 33.333 3.68 0.00 42.77 1.82
3145 3175 7.004086 TCAAAATCTGACTGGATTTGGTTAGT 58.996 34.615 3.68 0.00 42.77 2.24
3199 6845 2.222819 GCTCACGTCGATCATTGGTTTC 60.223 50.000 0.00 0.00 0.00 2.78
3212 6858 3.123804 TGAGAAAGTTTCAGCTCACGTC 58.876 45.455 17.65 4.60 32.85 4.34
3239 6885 7.228906 CCAGAAACTGAAGAATGCATAGATGAT 59.771 37.037 0.00 0.00 32.44 2.45
3244 6890 5.188434 TCCCAGAAACTGAAGAATGCATAG 58.812 41.667 0.00 0.00 32.44 2.23
3337 7222 4.654915 TGGTTTGAGATTCATGCTTCTGA 58.345 39.130 2.39 0.00 0.00 3.27
3392 7279 7.535258 CACAAATTGAAGCGCAGATATATAACC 59.465 37.037 11.47 0.00 0.00 2.85
3430 7317 5.047802 TGAAGGTTCATTCTCCAGCAAATTC 60.048 40.000 0.00 0.00 31.01 2.17
3436 7323 5.189180 AGTTATGAAGGTTCATTCTCCAGC 58.811 41.667 10.39 0.00 45.13 4.85
3468 7355 3.826729 TCCATGTATCGATAGGACTGTGG 59.173 47.826 5.09 9.73 34.06 4.17
3469 7356 5.417266 AGATCCATGTATCGATAGGACTGTG 59.583 44.000 12.67 5.35 0.00 3.66
3471 7358 5.885352 AGAGATCCATGTATCGATAGGACTG 59.115 44.000 12.67 5.57 0.00 3.51
3480 7367 7.254590 GGAAACTTTTGAGAGATCCATGTATCG 60.255 40.741 0.00 0.00 0.00 2.92
3551 7445 3.879892 GGAATGGAGGAAGTATGTGCTTC 59.120 47.826 2.68 2.68 42.92 3.86
3562 7456 7.510675 AGACAAGTATTTAGGAATGGAGGAA 57.489 36.000 0.00 0.00 0.00 3.36
3563 7457 7.510675 AAGACAAGTATTTAGGAATGGAGGA 57.489 36.000 0.00 0.00 0.00 3.71
3564 7458 8.049721 AGAAAGACAAGTATTTAGGAATGGAGG 58.950 37.037 0.00 0.00 0.00 4.30
3579 7473 8.964476 TTGTTGAAATCTCTAGAAAGACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3580 7474 9.050601 ACTTGTTGAAATCTCTAGAAAGACAAG 57.949 33.333 17.75 17.75 33.18 3.16
3581 7475 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
3582 7476 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
3583 7477 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
3584 7478 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
3585 7479 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
3586 7480 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
3587 7481 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
3588 7482 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
3589 7483 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
3590 7484 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3591 7485 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
3592 7486 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
3593 7487 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
3594 7488 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
3595 7489 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3596 7490 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3597 7491 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3598 7492 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3599 7493 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3600 7494 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3601 7495 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3602 7496 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3603 7497 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3604 7498 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3605 7499 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3606 7500 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3607 7501 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3608 7502 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3609 7503 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3610 7504 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3611 7505 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3612 7506 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3613 7507 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3614 7508 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3615 7509 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3616 7510 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3617 7511 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3618 7512 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3629 7523 9.817809 TGGACATATTTTAGAGTGTAGATTCAC 57.182 33.333 0.00 0.00 38.46 3.18
3650 7544 9.470399 ACTATTACATACGGATGTATATGGACA 57.530 33.333 20.99 4.96 45.77 4.02
3651 7545 9.947669 GACTATTACATACGGATGTATATGGAC 57.052 37.037 20.99 14.18 45.77 4.02
3652 7546 9.916360 AGACTATTACATACGGATGTATATGGA 57.084 33.333 20.99 6.44 45.77 3.41
3692 7586 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
3693 7587 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
3694 7588 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3695 7589 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3696 7590 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3697 7591 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3698 7592 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3699 7593 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3700 7594 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3701 7595 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
3702 7596 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
3703 7597 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
3704 7598 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3705 7599 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3706 7600 2.827921 GTTGTACTCCCTCCGTTCCTAA 59.172 50.000 0.00 0.00 0.00 2.69
3707 7601 2.225091 TGTTGTACTCCCTCCGTTCCTA 60.225 50.000 0.00 0.00 0.00 2.94
3708 7602 1.264295 GTTGTACTCCCTCCGTTCCT 58.736 55.000 0.00 0.00 0.00 3.36
3709 7603 0.971386 TGTTGTACTCCCTCCGTTCC 59.029 55.000 0.00 0.00 0.00 3.62
3710 7604 1.342174 TGTGTTGTACTCCCTCCGTTC 59.658 52.381 0.00 0.00 0.00 3.95
3711 7605 1.416243 TGTGTTGTACTCCCTCCGTT 58.584 50.000 0.00 0.00 0.00 4.44
3712 7606 1.275291 CATGTGTTGTACTCCCTCCGT 59.725 52.381 0.00 0.00 0.00 4.69
3713 7607 1.405526 CCATGTGTTGTACTCCCTCCG 60.406 57.143 0.00 0.00 0.00 4.63
3714 7608 1.906574 TCCATGTGTTGTACTCCCTCC 59.093 52.381 0.00 0.00 0.00 4.30
3715 7609 2.832129 TCTCCATGTGTTGTACTCCCTC 59.168 50.000 0.00 0.00 0.00 4.30
3716 7610 2.902608 TCTCCATGTGTTGTACTCCCT 58.097 47.619 0.00 0.00 0.00 4.20
3717 7611 3.695830 TTCTCCATGTGTTGTACTCCC 57.304 47.619 0.00 0.00 0.00 4.30
3718 7612 4.832248 TGATTCTCCATGTGTTGTACTCC 58.168 43.478 0.00 0.00 0.00 3.85
3719 7613 5.122396 GGTTGATTCTCCATGTGTTGTACTC 59.878 44.000 0.00 0.00 0.00 2.59
3720 7614 5.003804 GGTTGATTCTCCATGTGTTGTACT 58.996 41.667 0.00 0.00 0.00 2.73
3721 7615 5.003804 AGGTTGATTCTCCATGTGTTGTAC 58.996 41.667 0.00 0.00 0.00 2.90
3722 7616 5.241403 AGGTTGATTCTCCATGTGTTGTA 57.759 39.130 0.00 0.00 0.00 2.41
3723 7617 4.074970 GAGGTTGATTCTCCATGTGTTGT 58.925 43.478 0.00 0.00 0.00 3.32
3724 7618 4.691860 GAGGTTGATTCTCCATGTGTTG 57.308 45.455 0.00 0.00 0.00 3.33
3733 7627 5.988287 AGAAGATTCTGGAGGTTGATTCTC 58.012 41.667 0.00 0.00 35.89 2.87
3734 7628 6.179040 CAAGAAGATTCTGGAGGTTGATTCT 58.821 40.000 0.00 0.00 37.65 2.40
3735 7629 5.163673 GCAAGAAGATTCTGGAGGTTGATTC 60.164 44.000 0.95 0.00 37.65 2.52
3736 7630 4.704057 GCAAGAAGATTCTGGAGGTTGATT 59.296 41.667 0.95 0.00 37.65 2.57
3737 7631 4.268359 GCAAGAAGATTCTGGAGGTTGAT 58.732 43.478 0.95 0.00 37.65 2.57
3738 7632 3.560025 GGCAAGAAGATTCTGGAGGTTGA 60.560 47.826 0.95 0.00 37.65 3.18
3739 7633 2.751806 GGCAAGAAGATTCTGGAGGTTG 59.248 50.000 0.95 0.00 37.65 3.77
3740 7634 2.646798 AGGCAAGAAGATTCTGGAGGTT 59.353 45.455 0.95 0.00 37.65 3.50
3741 7635 2.273619 AGGCAAGAAGATTCTGGAGGT 58.726 47.619 0.95 0.00 37.65 3.85
3742 7636 3.454082 AGTAGGCAAGAAGATTCTGGAGG 59.546 47.826 0.95 0.00 37.65 4.30
3743 7637 4.440880 CAGTAGGCAAGAAGATTCTGGAG 58.559 47.826 0.95 0.00 37.65 3.86
3744 7638 3.369892 GCAGTAGGCAAGAAGATTCTGGA 60.370 47.826 0.95 0.00 43.97 3.86
3745 7639 2.941720 GCAGTAGGCAAGAAGATTCTGG 59.058 50.000 0.00 0.00 43.97 3.86
3758 7652 0.460311 ATGTCAGTACGGCAGTAGGC 59.540 55.000 0.00 0.00 43.74 3.93
3759 7653 4.585955 ATTATGTCAGTACGGCAGTAGG 57.414 45.455 0.00 0.00 32.77 3.18
3760 7654 9.856488 AATATTATTATGTCAGTACGGCAGTAG 57.144 33.333 0.00 0.00 32.77 2.57
3761 7655 9.634163 CAATATTATTATGTCAGTACGGCAGTA 57.366 33.333 0.00 0.00 0.00 2.74
3762 7656 8.364894 TCAATATTATTATGTCAGTACGGCAGT 58.635 33.333 0.00 0.00 0.00 4.40
3763 7657 8.648097 GTCAATATTATTATGTCAGTACGGCAG 58.352 37.037 0.00 0.00 0.00 4.85
3764 7658 7.601130 GGTCAATATTATTATGTCAGTACGGCA 59.399 37.037 0.00 0.00 0.00 5.69
3765 7659 7.817962 AGGTCAATATTATTATGTCAGTACGGC 59.182 37.037 0.00 0.00 0.00 5.68
3766 7660 9.355215 GAGGTCAATATTATTATGTCAGTACGG 57.645 37.037 0.00 0.00 0.00 4.02
3767 7661 9.908152 TGAGGTCAATATTATTATGTCAGTACG 57.092 33.333 0.00 0.00 0.00 3.67
3785 7679 9.513906 TGTTATTGATATTTCTGTTGAGGTCAA 57.486 29.630 0.00 0.00 0.00 3.18
3786 7680 9.685276 ATGTTATTGATATTTCTGTTGAGGTCA 57.315 29.630 0.00 0.00 0.00 4.02
3788 7682 9.685276 TGATGTTATTGATATTTCTGTTGAGGT 57.315 29.630 0.00 0.00 0.00 3.85
3806 7700 9.236691 CGCATTAAAGCAAGTATTTGATGTTAT 57.763 29.630 1.56 0.00 36.52 1.89
3807 7701 8.240682 ACGCATTAAAGCAAGTATTTGATGTTA 58.759 29.630 1.56 0.00 36.52 2.41
3808 7702 7.090173 ACGCATTAAAGCAAGTATTTGATGTT 58.910 30.769 1.56 0.00 36.52 2.71
3809 7703 6.620678 ACGCATTAAAGCAAGTATTTGATGT 58.379 32.000 1.56 0.00 36.52 3.06
3810 7704 7.510428 AACGCATTAAAGCAAGTATTTGATG 57.490 32.000 1.56 0.00 36.95 3.07
3811 7705 8.028938 AGAAACGCATTAAAGCAAGTATTTGAT 58.971 29.630 1.56 0.00 36.36 2.57
3812 7706 7.367285 AGAAACGCATTAAAGCAAGTATTTGA 58.633 30.769 1.56 0.00 36.36 2.69
3813 7707 7.460120 CGAGAAACGCATTAAAGCAAGTATTTG 60.460 37.037 3.30 0.00 34.67 2.32
3814 7708 6.523201 CGAGAAACGCATTAAAGCAAGTATTT 59.477 34.615 3.30 0.00 34.51 1.40
3815 7709 6.021596 CGAGAAACGCATTAAAGCAAGTATT 58.978 36.000 3.30 0.00 34.51 1.89
3816 7710 5.560148 CGAGAAACGCATTAAAGCAAGTAT 58.440 37.500 3.30 0.00 34.51 2.12
3817 7711 4.953269 CGAGAAACGCATTAAAGCAAGTA 58.047 39.130 3.30 0.00 34.51 2.24
3818 7712 3.810373 CGAGAAACGCATTAAAGCAAGT 58.190 40.909 3.30 0.00 34.51 3.16
3831 7725 5.018695 AGTTTAATTCACAGCGAGAAACG 57.981 39.130 0.00 0.00 45.66 3.60
3832 7726 6.884187 TGTAGTTTAATTCACAGCGAGAAAC 58.116 36.000 0.00 0.00 0.00 2.78
3833 7727 6.147164 CCTGTAGTTTAATTCACAGCGAGAAA 59.853 38.462 0.00 0.00 37.63 2.52
3834 7728 5.637810 CCTGTAGTTTAATTCACAGCGAGAA 59.362 40.000 0.00 0.00 37.63 2.87
3835 7729 5.168569 CCTGTAGTTTAATTCACAGCGAGA 58.831 41.667 0.00 0.00 37.63 4.04
3836 7730 4.929808 ACCTGTAGTTTAATTCACAGCGAG 59.070 41.667 0.00 0.00 37.63 5.03
3837 7731 4.890088 ACCTGTAGTTTAATTCACAGCGA 58.110 39.130 0.00 0.00 37.63 4.93
3838 7732 5.382303 CAACCTGTAGTTTAATTCACAGCG 58.618 41.667 0.00 0.00 36.18 5.18
3839 7733 5.472137 TCCAACCTGTAGTTTAATTCACAGC 59.528 40.000 0.00 0.00 36.18 4.40
3840 7734 7.504924 TTCCAACCTGTAGTTTAATTCACAG 57.495 36.000 0.00 0.00 36.18 3.66
3841 7735 8.472007 AATTCCAACCTGTAGTTTAATTCACA 57.528 30.769 0.00 0.00 36.18 3.58
3842 7736 8.573035 TGAATTCCAACCTGTAGTTTAATTCAC 58.427 33.333 15.24 0.00 44.16 3.18
3843 7737 8.698973 TGAATTCCAACCTGTAGTTTAATTCA 57.301 30.769 15.24 15.24 45.29 2.57
3844 7738 9.573133 CATGAATTCCAACCTGTAGTTTAATTC 57.427 33.333 2.27 12.15 42.31 2.17
3845 7739 8.531146 CCATGAATTCCAACCTGTAGTTTAATT 58.469 33.333 2.27 0.00 36.18 1.40
3846 7740 7.363793 GCCATGAATTCCAACCTGTAGTTTAAT 60.364 37.037 2.27 0.00 36.18 1.40
3847 7741 6.071616 GCCATGAATTCCAACCTGTAGTTTAA 60.072 38.462 2.27 0.00 36.18 1.52
3848 7742 5.417580 GCCATGAATTCCAACCTGTAGTTTA 59.582 40.000 2.27 0.00 36.18 2.01
3849 7743 4.220602 GCCATGAATTCCAACCTGTAGTTT 59.779 41.667 2.27 0.00 36.18 2.66
3850 7744 3.763897 GCCATGAATTCCAACCTGTAGTT 59.236 43.478 2.27 0.00 40.16 2.24
3851 7745 3.356290 GCCATGAATTCCAACCTGTAGT 58.644 45.455 2.27 0.00 0.00 2.73
3852 7746 2.689983 GGCCATGAATTCCAACCTGTAG 59.310 50.000 0.00 0.00 0.00 2.74
3853 7747 2.622977 GGGCCATGAATTCCAACCTGTA 60.623 50.000 4.39 0.00 0.00 2.74
3854 7748 1.560505 GGCCATGAATTCCAACCTGT 58.439 50.000 0.00 0.00 0.00 4.00
3855 7749 0.826062 GGGCCATGAATTCCAACCTG 59.174 55.000 4.39 0.00 0.00 4.00
3856 7750 0.413037 TGGGCCATGAATTCCAACCT 59.587 50.000 0.00 0.00 0.00 3.50
3857 7751 1.274712 TTGGGCCATGAATTCCAACC 58.725 50.000 7.26 0.00 34.71 3.77
3858 7752 2.038295 TGTTTGGGCCATGAATTCCAAC 59.962 45.455 7.26 6.80 38.78 3.77
3859 7753 2.333069 TGTTTGGGCCATGAATTCCAA 58.667 42.857 7.26 0.00 37.48 3.53
3860 7754 2.021262 TGTTTGGGCCATGAATTCCA 57.979 45.000 7.26 0.00 0.00 3.53
3861 7755 3.073678 GTTTGTTTGGGCCATGAATTCC 58.926 45.455 7.26 0.00 0.00 3.01
3862 7756 2.736192 CGTTTGTTTGGGCCATGAATTC 59.264 45.455 7.26 0.00 0.00 2.17
3863 7757 2.765122 CGTTTGTTTGGGCCATGAATT 58.235 42.857 7.26 0.00 0.00 2.17
3864 7758 1.607767 GCGTTTGTTTGGGCCATGAAT 60.608 47.619 7.26 0.00 0.00 2.57
3865 7759 0.249657 GCGTTTGTTTGGGCCATGAA 60.250 50.000 7.26 0.00 0.00 2.57
3866 7760 1.365633 GCGTTTGTTTGGGCCATGA 59.634 52.632 7.26 0.00 0.00 3.07
3867 7761 0.945265 CTGCGTTTGTTTGGGCCATG 60.945 55.000 7.26 0.00 0.00 3.66
3868 7762 1.367102 CTGCGTTTGTTTGGGCCAT 59.633 52.632 7.26 0.00 0.00 4.40
3869 7763 2.790791 CCTGCGTTTGTTTGGGCCA 61.791 57.895 0.00 0.00 0.00 5.36
3870 7764 2.028925 CCTGCGTTTGTTTGGGCC 59.971 61.111 0.00 0.00 0.00 5.80
3871 7765 1.591327 CACCTGCGTTTGTTTGGGC 60.591 57.895 0.00 0.00 0.00 5.36
3872 7766 0.457851 TTCACCTGCGTTTGTTTGGG 59.542 50.000 0.00 0.00 0.00 4.12
3873 7767 1.403679 TCTTCACCTGCGTTTGTTTGG 59.596 47.619 0.00 0.00 0.00 3.28
3874 7768 2.842208 TCTTCACCTGCGTTTGTTTG 57.158 45.000 0.00 0.00 0.00 2.93
3875 7769 4.023193 CCTTATCTTCACCTGCGTTTGTTT 60.023 41.667 0.00 0.00 0.00 2.83
3876 7770 3.502211 CCTTATCTTCACCTGCGTTTGTT 59.498 43.478 0.00 0.00 0.00 2.83
3877 7771 3.074412 CCTTATCTTCACCTGCGTTTGT 58.926 45.455 0.00 0.00 0.00 2.83
3878 7772 2.420022 CCCTTATCTTCACCTGCGTTTG 59.580 50.000 0.00 0.00 0.00 2.93
3879 7773 2.618045 CCCCTTATCTTCACCTGCGTTT 60.618 50.000 0.00 0.00 0.00 3.60
3880 7774 1.065418 CCCCTTATCTTCACCTGCGTT 60.065 52.381 0.00 0.00 0.00 4.84
3881 7775 0.541863 CCCCTTATCTTCACCTGCGT 59.458 55.000 0.00 0.00 0.00 5.24
3882 7776 0.179045 CCCCCTTATCTTCACCTGCG 60.179 60.000 0.00 0.00 0.00 5.18
3883 7777 0.919710 ACCCCCTTATCTTCACCTGC 59.080 55.000 0.00 0.00 0.00 4.85
3884 7778 1.916181 ACACCCCCTTATCTTCACCTG 59.084 52.381 0.00 0.00 0.00 4.00
3885 7779 1.916181 CACACCCCCTTATCTTCACCT 59.084 52.381 0.00 0.00 0.00 4.00
3886 7780 1.913419 TCACACCCCCTTATCTTCACC 59.087 52.381 0.00 0.00 0.00 4.02
3887 7781 2.572104 ACTCACACCCCCTTATCTTCAC 59.428 50.000 0.00 0.00 0.00 3.18
3888 7782 2.838202 GACTCACACCCCCTTATCTTCA 59.162 50.000 0.00 0.00 0.00 3.02
3889 7783 2.838202 TGACTCACACCCCCTTATCTTC 59.162 50.000 0.00 0.00 0.00 2.87
3890 7784 2.915869 TGACTCACACCCCCTTATCTT 58.084 47.619 0.00 0.00 0.00 2.40
3891 7785 2.642171 TGACTCACACCCCCTTATCT 57.358 50.000 0.00 0.00 0.00 1.98
3892 7786 2.158755 CCATGACTCACACCCCCTTATC 60.159 54.545 0.00 0.00 0.00 1.75
3893 7787 1.846439 CCATGACTCACACCCCCTTAT 59.154 52.381 0.00 0.00 0.00 1.73
3894 7788 1.203376 TCCATGACTCACACCCCCTTA 60.203 52.381 0.00 0.00 0.00 2.69
3895 7789 0.475632 TCCATGACTCACACCCCCTT 60.476 55.000 0.00 0.00 0.00 3.95
3896 7790 0.475632 TTCCATGACTCACACCCCCT 60.476 55.000 0.00 0.00 0.00 4.79
3897 7791 0.404040 TTTCCATGACTCACACCCCC 59.596 55.000 0.00 0.00 0.00 5.40
3898 7792 1.886542 GTTTTCCATGACTCACACCCC 59.113 52.381 0.00 0.00 0.00 4.95
3899 7793 2.863809 AGTTTTCCATGACTCACACCC 58.136 47.619 0.00 0.00 0.00 4.61
3900 7794 4.455877 CCTAAGTTTTCCATGACTCACACC 59.544 45.833 0.00 0.00 0.00 4.16
3901 7795 5.305585 TCCTAAGTTTTCCATGACTCACAC 58.694 41.667 0.00 0.00 0.00 3.82
3902 7796 5.551233 CTCCTAAGTTTTCCATGACTCACA 58.449 41.667 0.00 0.00 0.00 3.58
3903 7797 4.393371 GCTCCTAAGTTTTCCATGACTCAC 59.607 45.833 0.00 0.00 0.00 3.51
3904 7798 4.565652 GGCTCCTAAGTTTTCCATGACTCA 60.566 45.833 0.00 0.00 0.00 3.41
3905 7799 3.942115 GGCTCCTAAGTTTTCCATGACTC 59.058 47.826 0.00 0.00 0.00 3.36
3906 7800 3.330701 TGGCTCCTAAGTTTTCCATGACT 59.669 43.478 0.00 0.00 0.00 3.41
3907 7801 3.686016 TGGCTCCTAAGTTTTCCATGAC 58.314 45.455 0.00 0.00 0.00 3.06
3908 7802 4.591321 ATGGCTCCTAAGTTTTCCATGA 57.409 40.909 0.00 0.00 33.47 3.07
3909 7803 6.773976 TTTATGGCTCCTAAGTTTTCCATG 57.226 37.500 0.00 0.00 35.99 3.66
3910 7804 7.673926 TCTTTTTATGGCTCCTAAGTTTTCCAT 59.326 33.333 0.00 0.00 37.92 3.41
3911 7805 7.007723 TCTTTTTATGGCTCCTAAGTTTTCCA 58.992 34.615 0.00 0.00 0.00 3.53
3912 7806 7.462571 TCTTTTTATGGCTCCTAAGTTTTCC 57.537 36.000 0.00 0.00 0.00 3.13
3913 7807 9.193133 GTTTCTTTTTATGGCTCCTAAGTTTTC 57.807 33.333 0.00 0.00 0.00 2.29
3914 7808 7.865889 CGTTTCTTTTTATGGCTCCTAAGTTTT 59.134 33.333 0.00 0.00 0.00 2.43
3915 7809 7.368059 CGTTTCTTTTTATGGCTCCTAAGTTT 58.632 34.615 0.00 0.00 0.00 2.66
3916 7810 6.072119 CCGTTTCTTTTTATGGCTCCTAAGTT 60.072 38.462 0.00 0.00 0.00 2.66
3917 7811 5.414765 CCGTTTCTTTTTATGGCTCCTAAGT 59.585 40.000 0.00 0.00 0.00 2.24
3918 7812 5.676331 GCCGTTTCTTTTTATGGCTCCTAAG 60.676 44.000 0.00 0.00 42.06 2.18
3919 7813 4.157105 GCCGTTTCTTTTTATGGCTCCTAA 59.843 41.667 0.00 0.00 42.06 2.69
3920 7814 3.692593 GCCGTTTCTTTTTATGGCTCCTA 59.307 43.478 0.00 0.00 42.06 2.94
3921 7815 2.492088 GCCGTTTCTTTTTATGGCTCCT 59.508 45.455 0.00 0.00 42.06 3.69
3922 7816 2.230266 TGCCGTTTCTTTTTATGGCTCC 59.770 45.455 0.00 0.00 44.90 4.70
3923 7817 3.057526 AGTGCCGTTTCTTTTTATGGCTC 60.058 43.478 0.00 0.00 44.90 4.70
3924 7818 2.890945 AGTGCCGTTTCTTTTTATGGCT 59.109 40.909 0.00 0.00 44.90 4.75
3925 7819 3.297830 AGTGCCGTTTCTTTTTATGGC 57.702 42.857 0.00 0.00 44.88 4.40
3926 7820 5.522097 ACAAAAGTGCCGTTTCTTTTTATGG 59.478 36.000 0.00 0.00 40.43 2.74
3927 7821 6.475402 AGACAAAAGTGCCGTTTCTTTTTATG 59.525 34.615 0.00 0.00 40.43 1.90
3928 7822 6.569780 AGACAAAAGTGCCGTTTCTTTTTAT 58.430 32.000 0.00 0.00 40.43 1.40
3929 7823 5.956642 AGACAAAAGTGCCGTTTCTTTTTA 58.043 33.333 0.00 0.00 40.43 1.52
3930 7824 4.816392 AGACAAAAGTGCCGTTTCTTTTT 58.184 34.783 0.00 0.00 40.43 1.94
3931 7825 4.450082 AGACAAAAGTGCCGTTTCTTTT 57.550 36.364 0.00 0.00 42.25 2.27
3932 7826 5.570234 TTAGACAAAAGTGCCGTTTCTTT 57.430 34.783 0.00 0.00 35.73 2.52
3933 7827 5.767816 ATTAGACAAAAGTGCCGTTTCTT 57.232 34.783 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.