Multiple sequence alignment - TraesCS2B01G115500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G115500 chr2B 100.000 2498 0 0 1 2498 78829386 78831883 0.000000e+00 4614.0
1 TraesCS2B01G115500 chr2B 96.685 181 5 1 2276 2456 405271873 405271694 1.450000e-77 300.0
2 TraesCS2B01G115500 chr2B 93.434 198 12 1 2258 2455 64891578 64891774 2.430000e-75 292.0
3 TraesCS2B01G115500 chr2A 88.113 1733 107 51 329 2014 52132175 52133855 0.000000e+00 1967.0
4 TraesCS2B01G115500 chr2A 96.111 180 7 0 2275 2454 16774470 16774291 6.760000e-76 294.0
5 TraesCS2B01G115500 chr2A 88.584 219 20 4 1 218 52131765 52131979 6.850000e-66 261.0
6 TraesCS2B01G115500 chr2D 87.193 1710 96 47 317 1985 50472754 50474381 0.000000e+00 1831.0
7 TraesCS2B01G115500 chr2D 94.071 253 12 2 1 250 50472377 50472629 5.040000e-102 381.0
8 TraesCS2B01G115500 chr2D 95.370 108 5 0 1989 2096 50476007 50476114 3.300000e-39 172.0
9 TraesCS2B01G115500 chr4B 97.222 180 5 0 2276 2455 666660159 666660338 3.120000e-79 305.0
10 TraesCS2B01G115500 chr4B 97.222 180 3 2 2276 2455 666696785 666696962 1.120000e-78 303.0
11 TraesCS2B01G115500 chr5B 96.133 181 5 1 2278 2458 532890468 532890290 6.760000e-76 294.0
12 TraesCS2B01G115500 chr6B 95.604 182 8 0 2275 2456 657617604 657617423 2.430000e-75 292.0
13 TraesCS2B01G115500 chr1B 92.893 197 10 3 2273 2468 339363250 339363443 1.460000e-72 283.0
14 TraesCS2B01G115500 chr6A 91.626 203 14 3 2266 2468 591098787 591098986 6.800000e-71 278.0
15 TraesCS2B01G115500 chr7A 85.135 74 9 2 1290 1362 10017427 10017499 9.580000e-10 75.0
16 TraesCS2B01G115500 chr4A 84.615 78 8 4 1290 1365 727804135 727804060 9.580000e-10 75.0
17 TraesCS2B01G115500 chr4A 83.333 78 9 3 1290 1365 727745955 727745880 4.460000e-08 69.4
18 TraesCS2B01G115500 chr4A 95.122 41 2 0 1290 1330 727841788 727841748 5.770000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G115500 chr2B 78829386 78831883 2497 False 4614.000000 4614 100.000000 1 2498 1 chr2B.!!$F2 2497
1 TraesCS2B01G115500 chr2A 52131765 52133855 2090 False 1114.000000 1967 88.348500 1 2014 2 chr2A.!!$F1 2013
2 TraesCS2B01G115500 chr2D 50472377 50476114 3737 False 794.666667 1831 92.211333 1 2096 3 chr2D.!!$F1 2095

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
389 469 1.831736 ACTGTACACATGGACTAGGCC 59.168 52.381 8.06 8.06 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1918 2209 0.030638 GACAGAGAGATCTCCAGCGC 59.969 60.0 19.3 0.0 43.88 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.323656 CGAAGTTTGCTGTATCTTTTGTAAAGG 59.676 37.037 0.00 0.00 0.00 3.11
70 71 2.820037 GCCTTGCCGTGCCTACTC 60.820 66.667 0.00 0.00 0.00 2.59
83 84 3.995048 GTGCCTACTCAAGTTTCTGTACC 59.005 47.826 0.00 0.00 0.00 3.34
84 85 3.251571 GCCTACTCAAGTTTCTGTACCG 58.748 50.000 0.00 0.00 0.00 4.02
250 254 2.515854 AGTACATCTGTCACCGACTGT 58.484 47.619 0.00 0.00 34.05 3.55
255 259 3.701542 ACATCTGTCACCGACTGTATGAT 59.298 43.478 14.25 0.00 34.05 2.45
256 260 3.782889 TCTGTCACCGACTGTATGATG 57.217 47.619 0.00 0.00 34.05 3.07
257 261 3.352648 TCTGTCACCGACTGTATGATGA 58.647 45.455 0.00 0.00 34.05 2.92
310 389 9.836864 ACAATATGTAGATGATAATGTGTGTGT 57.163 29.630 0.00 0.00 0.00 3.72
312 391 9.836864 AATATGTAGATGATAATGTGTGTGTGT 57.163 29.630 0.00 0.00 0.00 3.72
313 392 6.966435 TGTAGATGATAATGTGTGTGTGTG 57.034 37.500 0.00 0.00 0.00 3.82
314 393 6.463360 TGTAGATGATAATGTGTGTGTGTGT 58.537 36.000 0.00 0.00 0.00 3.72
315 394 5.868043 AGATGATAATGTGTGTGTGTGTG 57.132 39.130 0.00 0.00 0.00 3.82
316 395 5.308014 AGATGATAATGTGTGTGTGTGTGT 58.692 37.500 0.00 0.00 0.00 3.72
317 396 4.809815 TGATAATGTGTGTGTGTGTGTG 57.190 40.909 0.00 0.00 0.00 3.82
318 397 4.195416 TGATAATGTGTGTGTGTGTGTGT 58.805 39.130 0.00 0.00 0.00 3.72
319 398 4.272261 TGATAATGTGTGTGTGTGTGTGTC 59.728 41.667 0.00 0.00 0.00 3.67
385 465 4.464951 CCTGGTTACTGTACACATGGACTA 59.535 45.833 0.00 0.00 0.00 2.59
389 469 1.831736 ACTGTACACATGGACTAGGCC 59.168 52.381 8.06 8.06 0.00 5.19
430 622 8.006741 ACTTTTCATTTGTCACGATTTATTGC 57.993 30.769 0.00 0.00 0.00 3.56
431 623 6.942886 TTTCATTTGTCACGATTTATTGCC 57.057 33.333 0.00 0.00 0.00 4.52
432 624 5.895636 TCATTTGTCACGATTTATTGCCT 57.104 34.783 0.00 0.00 0.00 4.75
433 625 5.879237 TCATTTGTCACGATTTATTGCCTC 58.121 37.500 0.00 0.00 0.00 4.70
459 651 3.891366 AGTGGAGGTTGATGTTTCTTTGG 59.109 43.478 0.00 0.00 0.00 3.28
518 710 2.808543 GTTTGCAAGTGAGAGGTACCAG 59.191 50.000 15.94 0.00 0.00 4.00
586 781 7.423199 TGTTCTGGATAATACGATCTGTGTAC 58.577 38.462 0.00 0.00 0.00 2.90
607 802 3.245730 ACCAATCCATCACCACAAGGAAT 60.246 43.478 0.00 0.00 38.69 3.01
608 803 3.770933 CCAATCCATCACCACAAGGAATT 59.229 43.478 0.00 0.00 38.69 2.17
609 804 4.223477 CCAATCCATCACCACAAGGAATTT 59.777 41.667 0.00 0.00 38.69 1.82
610 805 5.280113 CCAATCCATCACCACAAGGAATTTT 60.280 40.000 0.00 0.00 38.69 1.82
611 806 6.232692 CAATCCATCACCACAAGGAATTTTT 58.767 36.000 0.00 0.00 38.69 1.94
723 950 3.402691 ATCACGCGAGCTCTGACCG 62.403 63.158 15.93 11.20 0.00 4.79
790 1018 2.446848 CCATGAGAGGTGCCCGGAT 61.447 63.158 0.73 0.00 0.00 4.18
798 1026 2.785425 GGTGCCCGGATTGAATGCC 61.785 63.158 0.73 0.00 0.00 4.40
829 1065 2.028476 TCACACCCGAAGTCAAATCGAT 60.028 45.455 0.00 0.00 42.76 3.59
892 1134 3.699779 TGATCTCCATATATCGCGAGC 57.300 47.619 16.66 0.00 0.00 5.03
895 1137 3.277142 TCTCCATATATCGCGAGCCTA 57.723 47.619 16.66 2.00 0.00 3.93
1428 1679 2.363172 GGAGCTGGACCTGGACTCC 61.363 68.421 0.00 8.60 40.14 3.85
1460 1711 3.848830 CATGGCGTACGTGCACGG 61.849 66.667 39.21 24.45 44.95 4.94
1500 1751 2.158959 GTTCTGGTCGCCGTGATCG 61.159 63.158 0.00 0.00 0.00 3.69
1613 1877 2.507769 GTACGTACGGTGGCCTGC 60.508 66.667 21.06 0.00 0.00 4.85
1651 1915 7.088272 GGCGGTTTTTGTATATTGTTTTCTCT 58.912 34.615 0.00 0.00 0.00 3.10
1694 1965 7.663493 TCATTCCTCTTCTCCTTTCTTTCTTTC 59.337 37.037 0.00 0.00 0.00 2.62
1697 1968 7.578203 TCCTCTTCTCCTTTCTTTCTTTCTTT 58.422 34.615 0.00 0.00 0.00 2.52
1698 1969 8.055790 TCCTCTTCTCCTTTCTTTCTTTCTTTT 58.944 33.333 0.00 0.00 0.00 2.27
1700 1971 9.119418 CTCTTCTCCTTTCTTTCTTTCTTTTCT 57.881 33.333 0.00 0.00 0.00 2.52
1714 1985 8.383318 TCTTTCTTTTCTAGAAGATGTGGTTG 57.617 34.615 5.12 0.00 43.52 3.77
1739 2010 3.062466 CACGAGAGAGCGGTGGGA 61.062 66.667 0.00 0.00 35.12 4.37
1783 2062 1.395068 CGCAGTTTGTTAATGGCGCG 61.395 55.000 0.00 0.00 37.96 6.86
1784 2063 0.386731 GCAGTTTGTTAATGGCGCGT 60.387 50.000 8.43 0.00 0.00 6.01
1785 2064 1.326576 CAGTTTGTTAATGGCGCGTG 58.673 50.000 8.43 0.00 0.00 5.34
1786 2065 0.386731 AGTTTGTTAATGGCGCGTGC 60.387 50.000 13.78 13.78 41.71 5.34
1787 2066 1.441182 TTTGTTAATGGCGCGTGCG 60.441 52.632 15.81 10.36 44.10 5.34
1886 2165 1.004277 CTTGCCTCGACGTGTGTCTC 61.004 60.000 0.00 0.00 43.21 3.36
1926 2217 2.101965 CTCACGAGAGCGCTGGAG 59.898 66.667 18.48 9.93 42.48 3.86
1927 2218 2.359975 TCACGAGAGCGCTGGAGA 60.360 61.111 18.48 5.08 42.48 3.71
1940 2231 1.603802 GCTGGAGATCTCTCTGTCTCG 59.396 57.143 21.81 3.84 41.36 4.04
1996 3911 2.108168 GGGTCTGGGGCTTTATTTTCC 58.892 52.381 0.00 0.00 0.00 3.13
2055 3970 2.034179 TCGATCACCGTATCATGGTCAC 59.966 50.000 0.00 0.00 34.66 3.67
2056 3971 2.755650 GATCACCGTATCATGGTCACC 58.244 52.381 0.00 0.00 34.66 4.02
2057 3972 0.458260 TCACCGTATCATGGTCACCG 59.542 55.000 0.00 0.00 34.66 4.94
2066 3981 1.683385 TCATGGTCACCGAGATAGCAG 59.317 52.381 0.00 0.00 0.00 4.24
2096 4011 9.790389 CGTGGAAATACAGGATCTATCTATAAC 57.210 37.037 0.00 0.00 0.00 1.89
2097 4012 9.790389 GTGGAAATACAGGATCTATCTATAACG 57.210 37.037 0.00 0.00 0.00 3.18
2098 4013 9.749340 TGGAAATACAGGATCTATCTATAACGA 57.251 33.333 0.00 0.00 0.00 3.85
2100 4015 9.724839 GAAATACAGGATCTATCTATAACGAGC 57.275 37.037 0.00 0.00 0.00 5.03
2101 4016 8.809468 AATACAGGATCTATCTATAACGAGCA 57.191 34.615 0.00 0.00 0.00 4.26
2102 4017 6.503589 ACAGGATCTATCTATAACGAGCAC 57.496 41.667 0.00 0.00 0.00 4.40
2103 4018 5.122554 ACAGGATCTATCTATAACGAGCACG 59.877 44.000 0.76 0.76 45.75 5.34
2104 4019 5.351740 CAGGATCTATCTATAACGAGCACGA 59.648 44.000 11.40 0.00 42.66 4.35
2105 4020 5.352016 AGGATCTATCTATAACGAGCACGAC 59.648 44.000 11.40 0.00 42.66 4.34
2106 4021 4.642424 TCTATCTATAACGAGCACGACG 57.358 45.455 11.40 0.00 42.66 5.12
2107 4022 4.053983 TCTATCTATAACGAGCACGACGT 58.946 43.478 11.40 0.00 45.89 4.34
2108 4023 2.447089 TCTATAACGAGCACGACGTG 57.553 50.000 23.43 23.43 43.16 4.49
2109 4024 1.063027 TCTATAACGAGCACGACGTGG 59.937 52.381 27.86 14.70 43.16 4.94
2110 4025 0.099259 TATAACGAGCACGACGTGGG 59.901 55.000 27.86 5.51 43.16 4.61
2111 4026 1.870055 ATAACGAGCACGACGTGGGT 61.870 55.000 27.86 13.62 43.16 4.51
2112 4027 2.736343 TAACGAGCACGACGTGGGTG 62.736 60.000 27.86 11.05 43.16 4.61
2114 4029 3.986006 GAGCACGACGTGGGTGGA 61.986 66.667 27.86 0.00 35.94 4.02
2115 4030 3.509137 GAGCACGACGTGGGTGGAA 62.509 63.158 27.86 0.00 35.94 3.53
2116 4031 3.041940 GCACGACGTGGGTGGAAG 61.042 66.667 27.86 1.66 35.94 3.46
2117 4032 2.357034 CACGACGTGGGTGGAAGG 60.357 66.667 20.26 0.00 0.00 3.46
2118 4033 4.309950 ACGACGTGGGTGGAAGGC 62.310 66.667 0.00 0.00 0.00 4.35
2119 4034 4.308458 CGACGTGGGTGGAAGGCA 62.308 66.667 0.00 0.00 0.00 4.75
2120 4035 2.112297 GACGTGGGTGGAAGGCAA 59.888 61.111 0.00 0.00 0.00 4.52
2121 4036 1.966451 GACGTGGGTGGAAGGCAAG 60.966 63.158 0.00 0.00 0.00 4.01
2122 4037 2.672996 CGTGGGTGGAAGGCAAGG 60.673 66.667 0.00 0.00 0.00 3.61
2123 4038 2.283173 GTGGGTGGAAGGCAAGGG 60.283 66.667 0.00 0.00 0.00 3.95
2124 4039 2.780924 TGGGTGGAAGGCAAGGGT 60.781 61.111 0.00 0.00 0.00 4.34
2125 4040 2.399607 TGGGTGGAAGGCAAGGGTT 61.400 57.895 0.00 0.00 0.00 4.11
2126 4041 1.908299 GGGTGGAAGGCAAGGGTTG 60.908 63.158 0.00 0.00 0.00 3.77
2127 4042 1.908299 GGTGGAAGGCAAGGGTTGG 60.908 63.158 0.00 0.00 0.00 3.77
2128 4043 1.152546 GTGGAAGGCAAGGGTTGGT 60.153 57.895 0.00 0.00 0.00 3.67
2129 4044 1.152567 TGGAAGGCAAGGGTTGGTG 60.153 57.895 0.00 0.00 0.00 4.17
2130 4045 1.908299 GGAAGGCAAGGGTTGGTGG 60.908 63.158 0.00 0.00 0.00 4.61
2131 4046 1.908299 GAAGGCAAGGGTTGGTGGG 60.908 63.158 0.00 0.00 0.00 4.61
2132 4047 3.466803 AAGGCAAGGGTTGGTGGGG 62.467 63.158 0.00 0.00 0.00 4.96
2133 4048 3.909651 GGCAAGGGTTGGTGGGGA 61.910 66.667 0.00 0.00 0.00 4.81
2134 4049 2.445155 GCAAGGGTTGGTGGGGAT 59.555 61.111 0.00 0.00 0.00 3.85
2135 4050 1.229177 GCAAGGGTTGGTGGGGATT 60.229 57.895 0.00 0.00 0.00 3.01
2136 4051 0.835971 GCAAGGGTTGGTGGGGATTT 60.836 55.000 0.00 0.00 0.00 2.17
2137 4052 0.975887 CAAGGGTTGGTGGGGATTTG 59.024 55.000 0.00 0.00 0.00 2.32
2138 4053 0.565674 AAGGGTTGGTGGGGATTTGT 59.434 50.000 0.00 0.00 0.00 2.83
2139 4054 0.565674 AGGGTTGGTGGGGATTTGTT 59.434 50.000 0.00 0.00 0.00 2.83
2140 4055 0.684535 GGGTTGGTGGGGATTTGTTG 59.315 55.000 0.00 0.00 0.00 3.33
2141 4056 0.034756 GGTTGGTGGGGATTTGTTGC 59.965 55.000 0.00 0.00 0.00 4.17
2142 4057 0.755686 GTTGGTGGGGATTTGTTGCA 59.244 50.000 0.00 0.00 0.00 4.08
2143 4058 0.755686 TTGGTGGGGATTTGTTGCAC 59.244 50.000 0.00 0.00 0.00 4.57
2144 4059 1.118356 TGGTGGGGATTTGTTGCACC 61.118 55.000 0.00 0.00 0.00 5.01
2145 4060 1.288752 GTGGGGATTTGTTGCACCG 59.711 57.895 0.00 0.00 0.00 4.94
2146 4061 1.905843 TGGGGATTTGTTGCACCGG 60.906 57.895 0.00 0.00 0.00 5.28
2147 4062 1.605165 GGGGATTTGTTGCACCGGA 60.605 57.895 9.46 0.00 0.00 5.14
2148 4063 1.182385 GGGGATTTGTTGCACCGGAA 61.182 55.000 9.46 0.00 0.00 4.30
2149 4064 0.243636 GGGATTTGTTGCACCGGAAG 59.756 55.000 9.46 0.15 0.00 3.46
2150 4065 0.958822 GGATTTGTTGCACCGGAAGT 59.041 50.000 9.46 0.00 0.00 3.01
2160 4075 3.324207 ACCGGAAGTGAAAAGCCTC 57.676 52.632 9.46 0.00 0.00 4.70
2161 4076 0.250770 ACCGGAAGTGAAAAGCCTCC 60.251 55.000 9.46 0.00 0.00 4.30
2162 4077 0.250727 CCGGAAGTGAAAAGCCTCCA 60.251 55.000 0.00 0.00 0.00 3.86
2163 4078 1.604604 CGGAAGTGAAAAGCCTCCAA 58.395 50.000 0.00 0.00 0.00 3.53
2164 4079 1.953686 CGGAAGTGAAAAGCCTCCAAA 59.046 47.619 0.00 0.00 0.00 3.28
2165 4080 2.030805 CGGAAGTGAAAAGCCTCCAAAG 60.031 50.000 0.00 0.00 0.00 2.77
2166 4081 2.297315 GGAAGTGAAAAGCCTCCAAAGG 59.703 50.000 0.00 0.00 46.44 3.11
2167 4082 3.222603 GAAGTGAAAAGCCTCCAAAGGA 58.777 45.455 0.00 0.00 46.67 3.36
2168 4083 3.312736 AGTGAAAAGCCTCCAAAGGAA 57.687 42.857 0.00 0.00 46.67 3.36
2169 4084 2.959030 AGTGAAAAGCCTCCAAAGGAAC 59.041 45.455 0.00 0.00 46.67 3.62
2170 4085 2.959030 GTGAAAAGCCTCCAAAGGAACT 59.041 45.455 0.00 0.00 46.67 3.01
2171 4086 2.958355 TGAAAAGCCTCCAAAGGAACTG 59.042 45.455 0.00 0.00 46.67 3.16
2172 4087 1.332195 AAAGCCTCCAAAGGAACTGC 58.668 50.000 0.00 0.00 46.67 4.40
2173 4088 0.890996 AAGCCTCCAAAGGAACTGCG 60.891 55.000 0.00 0.00 46.67 5.18
2174 4089 2.335712 GCCTCCAAAGGAACTGCGG 61.336 63.158 0.00 0.00 46.67 5.69
2175 4090 1.073199 CCTCCAAAGGAACTGCGGT 59.927 57.895 0.00 0.00 46.67 5.68
2176 4091 0.537371 CCTCCAAAGGAACTGCGGTT 60.537 55.000 11.62 11.62 46.67 4.44
2177 4092 0.593128 CTCCAAAGGAACTGCGGTTG 59.407 55.000 17.49 0.81 40.86 3.77
2178 4093 1.007387 CCAAAGGAACTGCGGTTGC 60.007 57.895 21.24 21.24 40.86 4.17
2182 4097 4.043200 GGAACTGCGGTTGCTGCC 62.043 66.667 21.46 10.15 43.22 4.85
2183 4098 3.286751 GAACTGCGGTTGCTGCCA 61.287 61.111 17.49 0.00 43.22 4.92
2184 4099 2.598394 AACTGCGGTTGCTGCCAT 60.598 55.556 10.90 0.00 43.22 4.40
2185 4100 2.807631 GAACTGCGGTTGCTGCCATG 62.808 60.000 17.49 0.00 43.22 3.66
2186 4101 4.789075 CTGCGGTTGCTGCCATGC 62.789 66.667 0.00 0.00 43.34 4.06
2192 4107 3.689414 TTGCTGCCATGCAAGGAG 58.311 55.556 13.26 8.25 46.43 3.69
2193 4108 2.642254 TTGCTGCCATGCAAGGAGC 61.642 57.895 21.78 21.78 46.43 4.70
2208 4123 3.837669 GAGCGAGAGATCCGAAGAC 57.162 57.895 0.00 0.00 41.55 3.01
2209 4124 1.018148 GAGCGAGAGATCCGAAGACA 58.982 55.000 0.00 0.00 41.55 3.41
2210 4125 1.402259 GAGCGAGAGATCCGAAGACAA 59.598 52.381 0.00 0.00 41.55 3.18
2211 4126 1.133407 AGCGAGAGATCCGAAGACAAC 59.867 52.381 0.00 0.00 0.00 3.32
2212 4127 1.135373 GCGAGAGATCCGAAGACAACA 60.135 52.381 0.00 0.00 0.00 3.33
2213 4128 2.671351 GCGAGAGATCCGAAGACAACAA 60.671 50.000 0.00 0.00 0.00 2.83
2214 4129 3.175152 CGAGAGATCCGAAGACAACAAG 58.825 50.000 0.00 0.00 0.00 3.16
2215 4130 2.926838 GAGAGATCCGAAGACAACAAGC 59.073 50.000 0.00 0.00 0.00 4.01
2216 4131 2.300152 AGAGATCCGAAGACAACAAGCA 59.700 45.455 0.00 0.00 0.00 3.91
2217 4132 2.413453 GAGATCCGAAGACAACAAGCAC 59.587 50.000 0.00 0.00 0.00 4.40
2218 4133 1.126846 GATCCGAAGACAACAAGCACG 59.873 52.381 0.00 0.00 0.00 5.34
2219 4134 1.082756 CCGAAGACAACAAGCACGC 60.083 57.895 0.00 0.00 0.00 5.34
2220 4135 1.082756 CGAAGACAACAAGCACGCC 60.083 57.895 0.00 0.00 0.00 5.68
2221 4136 1.771073 CGAAGACAACAAGCACGCCA 61.771 55.000 0.00 0.00 0.00 5.69
2222 4137 0.593128 GAAGACAACAAGCACGCCAT 59.407 50.000 0.00 0.00 0.00 4.40
2223 4138 0.311790 AAGACAACAAGCACGCCATG 59.688 50.000 0.00 0.00 0.00 3.66
2249 4164 3.252964 CATGCGTGCTCCGTGAAA 58.747 55.556 0.00 0.00 39.32 2.69
2250 4165 1.573932 CATGCGTGCTCCGTGAAAA 59.426 52.632 0.00 0.00 39.32 2.29
2251 4166 0.168788 CATGCGTGCTCCGTGAAAAT 59.831 50.000 0.00 0.00 39.32 1.82
2252 4167 0.881118 ATGCGTGCTCCGTGAAAATT 59.119 45.000 0.00 0.00 39.32 1.82
2253 4168 0.237235 TGCGTGCTCCGTGAAAATTC 59.763 50.000 0.00 0.00 39.32 2.17
2254 4169 0.789383 GCGTGCTCCGTGAAAATTCG 60.789 55.000 0.00 0.00 39.32 3.34
2255 4170 0.789383 CGTGCTCCGTGAAAATTCGC 60.789 55.000 0.00 0.00 0.00 4.70
2262 4177 3.001576 GTGAAAATTCGCGAGGCAC 57.998 52.632 9.59 10.62 0.00 5.01
2263 4178 0.789383 GTGAAAATTCGCGAGGCACG 60.789 55.000 9.59 0.00 45.66 5.34
2274 4189 2.823196 CGAGGCACGCATTTATGAAA 57.177 45.000 0.00 0.00 34.51 2.69
2275 4190 2.440501 CGAGGCACGCATTTATGAAAC 58.559 47.619 0.00 0.00 34.51 2.78
2276 4191 2.159585 CGAGGCACGCATTTATGAAACA 60.160 45.455 0.00 0.00 34.51 2.83
2277 4192 3.669290 CGAGGCACGCATTTATGAAACAA 60.669 43.478 0.00 0.00 34.51 2.83
2278 4193 4.233789 GAGGCACGCATTTATGAAACAAA 58.766 39.130 0.00 0.00 0.00 2.83
2279 4194 4.626042 AGGCACGCATTTATGAAACAAAA 58.374 34.783 0.00 0.00 0.00 2.44
2280 4195 5.053145 AGGCACGCATTTATGAAACAAAAA 58.947 33.333 0.00 0.00 0.00 1.94
2281 4196 5.700373 AGGCACGCATTTATGAAACAAAAAT 59.300 32.000 0.00 0.00 0.00 1.82
2282 4197 5.789512 GGCACGCATTTATGAAACAAAAATG 59.210 36.000 0.00 0.00 41.42 2.32
2305 4220 9.464714 AATGCTAGACATATAAAGACTTACACG 57.535 33.333 0.00 0.00 38.34 4.49
2306 4221 6.916387 TGCTAGACATATAAAGACTTACACGC 59.084 38.462 0.00 0.00 0.00 5.34
2307 4222 7.140048 GCTAGACATATAAAGACTTACACGCT 58.860 38.462 0.00 0.00 0.00 5.07
2308 4223 7.648510 GCTAGACATATAAAGACTTACACGCTT 59.351 37.037 0.00 0.00 0.00 4.68
2309 4224 9.517609 CTAGACATATAAAGACTTACACGCTTT 57.482 33.333 0.00 0.00 36.06 3.51
2310 4225 8.773404 AGACATATAAAGACTTACACGCTTTT 57.227 30.769 0.00 0.00 34.12 2.27
2311 4226 9.865321 AGACATATAAAGACTTACACGCTTTTA 57.135 29.630 0.00 0.00 34.12 1.52
2312 4227 9.897349 GACATATAAAGACTTACACGCTTTTAC 57.103 33.333 0.00 0.00 34.12 2.01
2313 4228 9.426837 ACATATAAAGACTTACACGCTTTTACA 57.573 29.630 0.00 0.00 34.12 2.41
2314 4229 9.685005 CATATAAAGACTTACACGCTTTTACAC 57.315 33.333 0.00 0.00 34.12 2.90
2315 4230 4.703899 AAGACTTACACGCTTTTACACG 57.296 40.909 0.00 0.00 0.00 4.49
2316 4231 3.709987 AGACTTACACGCTTTTACACGT 58.290 40.909 0.00 0.00 44.75 4.49
2317 4232 4.114794 AGACTTACACGCTTTTACACGTT 58.885 39.130 0.00 0.00 41.32 3.99
2318 4233 4.207841 AGACTTACACGCTTTTACACGTTC 59.792 41.667 0.00 0.00 41.32 3.95
2319 4234 3.245990 ACTTACACGCTTTTACACGTTCC 59.754 43.478 0.00 0.00 41.32 3.62
2320 4235 1.944032 ACACGCTTTTACACGTTCCT 58.056 45.000 0.00 0.00 41.32 3.36
2321 4236 2.282407 ACACGCTTTTACACGTTCCTT 58.718 42.857 0.00 0.00 41.32 3.36
2322 4237 2.286025 ACACGCTTTTACACGTTCCTTC 59.714 45.455 0.00 0.00 41.32 3.46
2323 4238 1.869132 ACGCTTTTACACGTTCCTTCC 59.131 47.619 0.00 0.00 40.09 3.46
2324 4239 1.868498 CGCTTTTACACGTTCCTTCCA 59.132 47.619 0.00 0.00 0.00 3.53
2325 4240 2.482721 CGCTTTTACACGTTCCTTCCAT 59.517 45.455 0.00 0.00 0.00 3.41
2326 4241 3.424433 CGCTTTTACACGTTCCTTCCATC 60.424 47.826 0.00 0.00 0.00 3.51
2327 4242 3.751698 GCTTTTACACGTTCCTTCCATCT 59.248 43.478 0.00 0.00 0.00 2.90
2328 4243 4.933400 GCTTTTACACGTTCCTTCCATCTA 59.067 41.667 0.00 0.00 0.00 1.98
2329 4244 5.410439 GCTTTTACACGTTCCTTCCATCTAA 59.590 40.000 0.00 0.00 0.00 2.10
2330 4245 6.620089 GCTTTTACACGTTCCTTCCATCTAAC 60.620 42.308 0.00 0.00 0.00 2.34
2331 4246 5.471556 TTACACGTTCCTTCCATCTAACA 57.528 39.130 0.00 0.00 0.00 2.41
2332 4247 4.345859 ACACGTTCCTTCCATCTAACAA 57.654 40.909 0.00 0.00 0.00 2.83
2333 4248 4.062991 ACACGTTCCTTCCATCTAACAAC 58.937 43.478 0.00 0.00 0.00 3.32
2334 4249 3.435671 CACGTTCCTTCCATCTAACAACC 59.564 47.826 0.00 0.00 0.00 3.77
2335 4250 3.071892 ACGTTCCTTCCATCTAACAACCA 59.928 43.478 0.00 0.00 0.00 3.67
2336 4251 4.069304 CGTTCCTTCCATCTAACAACCAA 58.931 43.478 0.00 0.00 0.00 3.67
2337 4252 4.700213 CGTTCCTTCCATCTAACAACCAAT 59.300 41.667 0.00 0.00 0.00 3.16
2338 4253 5.163754 CGTTCCTTCCATCTAACAACCAATC 60.164 44.000 0.00 0.00 0.00 2.67
2339 4254 5.512942 TCCTTCCATCTAACAACCAATCA 57.487 39.130 0.00 0.00 0.00 2.57
2340 4255 5.253330 TCCTTCCATCTAACAACCAATCAC 58.747 41.667 0.00 0.00 0.00 3.06
2341 4256 5.009631 CCTTCCATCTAACAACCAATCACA 58.990 41.667 0.00 0.00 0.00 3.58
2342 4257 5.476599 CCTTCCATCTAACAACCAATCACAA 59.523 40.000 0.00 0.00 0.00 3.33
2343 4258 6.015519 CCTTCCATCTAACAACCAATCACAAA 60.016 38.462 0.00 0.00 0.00 2.83
2344 4259 6.325919 TCCATCTAACAACCAATCACAAAC 57.674 37.500 0.00 0.00 0.00 2.93
2345 4260 5.242838 TCCATCTAACAACCAATCACAAACC 59.757 40.000 0.00 0.00 0.00 3.27
2346 4261 5.243730 CCATCTAACAACCAATCACAAACCT 59.756 40.000 0.00 0.00 0.00 3.50
2347 4262 6.381801 CATCTAACAACCAATCACAAACCTC 58.618 40.000 0.00 0.00 0.00 3.85
2348 4263 5.690865 TCTAACAACCAATCACAAACCTCT 58.309 37.500 0.00 0.00 0.00 3.69
2349 4264 4.918810 AACAACCAATCACAAACCTCTC 57.081 40.909 0.00 0.00 0.00 3.20
2350 4265 3.222603 ACAACCAATCACAAACCTCTCC 58.777 45.455 0.00 0.00 0.00 3.71
2351 4266 2.558359 CAACCAATCACAAACCTCTCCC 59.442 50.000 0.00 0.00 0.00 4.30
2352 4267 1.075536 ACCAATCACAAACCTCTCCCC 59.924 52.381 0.00 0.00 0.00 4.81
2353 4268 1.616994 CCAATCACAAACCTCTCCCCC 60.617 57.143 0.00 0.00 0.00 5.40
2374 4289 2.134789 CTGATTTTCAGGGGAGTGGG 57.865 55.000 0.00 0.00 40.71 4.61
2375 4290 0.039618 TGATTTTCAGGGGAGTGGGC 59.960 55.000 0.00 0.00 0.00 5.36
2376 4291 0.684479 GATTTTCAGGGGAGTGGGCC 60.684 60.000 0.00 0.00 0.00 5.80
2377 4292 2.499303 ATTTTCAGGGGAGTGGGCCG 62.499 60.000 0.00 0.00 0.00 6.13
2378 4293 4.974438 TTCAGGGGAGTGGGCCGT 62.974 66.667 0.00 0.00 0.00 5.68
2391 4306 3.537874 GCCGTCCCGCTCACCTAT 61.538 66.667 0.00 0.00 0.00 2.57
2392 4307 3.090219 GCCGTCCCGCTCACCTATT 62.090 63.158 0.00 0.00 0.00 1.73
2393 4308 1.227263 CCGTCCCGCTCACCTATTG 60.227 63.158 0.00 0.00 0.00 1.90
2394 4309 1.672854 CCGTCCCGCTCACCTATTGA 61.673 60.000 0.00 0.00 0.00 2.57
2395 4310 0.527817 CGTCCCGCTCACCTATTGAC 60.528 60.000 0.00 0.00 0.00 3.18
2396 4311 0.179081 GTCCCGCTCACCTATTGACC 60.179 60.000 0.00 0.00 0.00 4.02
2397 4312 0.616395 TCCCGCTCACCTATTGACCA 60.616 55.000 0.00 0.00 0.00 4.02
2398 4313 0.251916 CCCGCTCACCTATTGACCAA 59.748 55.000 0.00 0.00 0.00 3.67
2399 4314 1.134098 CCCGCTCACCTATTGACCAAT 60.134 52.381 0.64 0.64 34.93 3.16
2400 4315 2.213499 CCGCTCACCTATTGACCAATC 58.787 52.381 0.00 0.00 32.50 2.67
2401 4316 2.419990 CCGCTCACCTATTGACCAATCA 60.420 50.000 0.00 0.00 32.50 2.57
2413 4328 5.975693 TTGACCAATCAAGGTTAACCATC 57.024 39.130 26.26 10.34 43.38 3.51
2414 4329 4.340617 TGACCAATCAAGGTTAACCATCC 58.659 43.478 26.26 0.00 43.38 3.51
2415 4330 4.044065 TGACCAATCAAGGTTAACCATCCT 59.956 41.667 26.26 2.59 43.38 3.24
2416 4331 4.344104 ACCAATCAAGGTTAACCATCCTG 58.656 43.478 26.26 16.38 39.34 3.86
2417 4332 4.202673 ACCAATCAAGGTTAACCATCCTGT 60.203 41.667 26.26 11.13 39.34 4.00
2418 4333 5.014755 ACCAATCAAGGTTAACCATCCTGTA 59.985 40.000 26.26 5.02 39.34 2.74
2419 4334 5.949354 CCAATCAAGGTTAACCATCCTGTAA 59.051 40.000 26.26 3.53 38.89 2.41
2420 4335 6.435904 CCAATCAAGGTTAACCATCCTGTAAA 59.564 38.462 26.26 3.51 38.89 2.01
2421 4336 7.039363 CCAATCAAGGTTAACCATCCTGTAAAA 60.039 37.037 26.26 3.19 38.89 1.52
2422 4337 7.703058 ATCAAGGTTAACCATCCTGTAAAAG 57.297 36.000 26.26 0.00 38.89 2.27
2423 4338 5.475564 TCAAGGTTAACCATCCTGTAAAAGC 59.524 40.000 26.26 0.00 38.89 3.51
2424 4339 4.341487 AGGTTAACCATCCTGTAAAAGCC 58.659 43.478 26.26 0.00 38.89 4.35
2425 4340 4.044191 AGGTTAACCATCCTGTAAAAGCCT 59.956 41.667 26.26 0.00 38.89 4.58
2426 4341 4.157840 GGTTAACCATCCTGTAAAAGCCTG 59.842 45.833 20.12 0.00 35.64 4.85
2427 4342 3.525800 AACCATCCTGTAAAAGCCTGT 57.474 42.857 0.00 0.00 0.00 4.00
2428 4343 4.650972 AACCATCCTGTAAAAGCCTGTA 57.349 40.909 0.00 0.00 0.00 2.74
2429 4344 4.650972 ACCATCCTGTAAAAGCCTGTAA 57.349 40.909 0.00 0.00 0.00 2.41
2430 4345 4.993028 ACCATCCTGTAAAAGCCTGTAAA 58.007 39.130 0.00 0.00 0.00 2.01
2431 4346 5.580022 ACCATCCTGTAAAAGCCTGTAAAT 58.420 37.500 0.00 0.00 0.00 1.40
2432 4347 5.652452 ACCATCCTGTAAAAGCCTGTAAATC 59.348 40.000 0.00 0.00 0.00 2.17
2433 4348 5.220854 CCATCCTGTAAAAGCCTGTAAATCG 60.221 44.000 0.00 0.00 0.00 3.34
2434 4349 4.901868 TCCTGTAAAAGCCTGTAAATCGT 58.098 39.130 0.00 0.00 0.00 3.73
2435 4350 5.310451 TCCTGTAAAAGCCTGTAAATCGTT 58.690 37.500 0.00 0.00 0.00 3.85
2436 4351 5.766174 TCCTGTAAAAGCCTGTAAATCGTTT 59.234 36.000 0.00 0.00 0.00 3.60
2437 4352 5.856455 CCTGTAAAAGCCTGTAAATCGTTTG 59.144 40.000 0.00 0.00 0.00 2.93
2438 4353 6.380095 TGTAAAAGCCTGTAAATCGTTTGT 57.620 33.333 0.00 0.00 0.00 2.83
2439 4354 7.308109 CCTGTAAAAGCCTGTAAATCGTTTGTA 60.308 37.037 0.00 0.00 0.00 2.41
2440 4355 7.354257 TGTAAAAGCCTGTAAATCGTTTGTAC 58.646 34.615 0.00 0.00 0.00 2.90
2452 4367 2.492001 CGTTTGTACGTGTAGCATTGC 58.508 47.619 0.00 0.00 42.72 3.56
2453 4368 2.723618 CGTTTGTACGTGTAGCATTGCC 60.724 50.000 4.70 0.00 42.72 4.52
2454 4369 1.072391 TTGTACGTGTAGCATTGCCG 58.928 50.000 4.70 4.23 0.00 5.69
2455 4370 0.038067 TGTACGTGTAGCATTGCCGT 60.038 50.000 13.66 13.66 35.68 5.68
2456 4371 1.073177 GTACGTGTAGCATTGCCGTT 58.927 50.000 14.23 0.00 33.32 4.44
2457 4372 1.461897 GTACGTGTAGCATTGCCGTTT 59.538 47.619 14.23 0.00 33.32 3.60
2458 4373 1.798283 ACGTGTAGCATTGCCGTTTA 58.202 45.000 4.70 0.00 0.00 2.01
2459 4374 2.352388 ACGTGTAGCATTGCCGTTTAT 58.648 42.857 4.70 0.00 0.00 1.40
2460 4375 2.095213 ACGTGTAGCATTGCCGTTTATG 59.905 45.455 4.70 0.00 0.00 1.90
2461 4376 2.350192 CGTGTAGCATTGCCGTTTATGA 59.650 45.455 4.70 0.00 0.00 2.15
2462 4377 3.181515 CGTGTAGCATTGCCGTTTATGAA 60.182 43.478 4.70 0.00 0.00 2.57
2463 4378 4.670478 CGTGTAGCATTGCCGTTTATGAAA 60.670 41.667 4.70 0.00 0.00 2.69
2464 4379 5.157781 GTGTAGCATTGCCGTTTATGAAAA 58.842 37.500 4.70 0.00 0.00 2.29
2465 4380 5.060446 GTGTAGCATTGCCGTTTATGAAAAC 59.940 40.000 4.70 0.00 41.36 2.43
2476 4391 4.464112 GTTTATGAAAACGTCTGCAGTCC 58.536 43.478 14.67 4.83 35.96 3.85
2477 4392 2.550830 ATGAAAACGTCTGCAGTCCT 57.449 45.000 14.67 0.00 0.00 3.85
2478 4393 1.865865 TGAAAACGTCTGCAGTCCTC 58.134 50.000 14.67 4.10 0.00 3.71
2479 4394 0.784778 GAAAACGTCTGCAGTCCTCG 59.215 55.000 14.67 15.81 0.00 4.63
2480 4395 0.387929 AAAACGTCTGCAGTCCTCGA 59.612 50.000 14.67 0.00 0.00 4.04
2481 4396 0.603569 AAACGTCTGCAGTCCTCGAT 59.396 50.000 14.67 6.92 0.00 3.59
2482 4397 0.109086 AACGTCTGCAGTCCTCGATG 60.109 55.000 14.67 1.07 0.00 3.84
2483 4398 1.244697 ACGTCTGCAGTCCTCGATGT 61.245 55.000 14.67 1.77 0.00 3.06
2484 4399 0.799917 CGTCTGCAGTCCTCGATGTG 60.800 60.000 14.67 0.00 0.00 3.21
2485 4400 0.244994 GTCTGCAGTCCTCGATGTGT 59.755 55.000 14.67 0.00 0.00 3.72
2486 4401 0.244721 TCTGCAGTCCTCGATGTGTG 59.755 55.000 14.67 0.00 0.00 3.82
2487 4402 1.357258 CTGCAGTCCTCGATGTGTGC 61.357 60.000 5.25 9.07 0.00 4.57
2488 4403 2.103042 GCAGTCCTCGATGTGTGCC 61.103 63.158 5.99 0.00 0.00 5.01
2489 4404 1.807165 CAGTCCTCGATGTGTGCCG 60.807 63.158 0.00 0.00 0.00 5.69
2490 4405 2.261671 GTCCTCGATGTGTGCCGT 59.738 61.111 0.00 0.00 0.00 5.68
2491 4406 2.094659 GTCCTCGATGTGTGCCGTG 61.095 63.158 0.00 0.00 0.00 4.94
2492 4407 2.261361 CCTCGATGTGTGCCGTGA 59.739 61.111 0.00 0.00 0.00 4.35
2493 4408 1.153568 CCTCGATGTGTGCCGTGAT 60.154 57.895 0.00 0.00 0.00 3.06
2494 4409 1.148157 CCTCGATGTGTGCCGTGATC 61.148 60.000 0.00 0.00 0.00 2.92
2495 4410 1.148157 CTCGATGTGTGCCGTGATCC 61.148 60.000 0.00 0.00 0.00 3.36
2496 4411 1.447663 CGATGTGTGCCGTGATCCA 60.448 57.895 0.00 0.00 0.00 3.41
2497 4412 0.811219 CGATGTGTGCCGTGATCCAT 60.811 55.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 3.305813 CGGTACAGAAACTTGAGTAGGCA 60.306 47.826 0.00 0.00 0.00 4.75
70 71 4.750098 ACAGATTCACGGTACAGAAACTTG 59.250 41.667 0.00 2.24 0.00 3.16
83 84 0.371301 CGCCACATCACAGATTCACG 59.629 55.000 0.00 0.00 0.00 4.35
84 85 1.725641 TCGCCACATCACAGATTCAC 58.274 50.000 0.00 0.00 0.00 3.18
221 225 5.402568 CGGTGACAGATGTACTATTATGCAC 59.597 44.000 0.00 0.00 0.00 4.57
250 254 7.759489 AACTGCTACCAAAGTTTTCATCATA 57.241 32.000 0.00 0.00 32.75 2.15
306 385 1.828595 AGGTACAGACACACACACACA 59.171 47.619 0.00 0.00 0.00 3.72
307 386 2.596904 AGGTACAGACACACACACAC 57.403 50.000 0.00 0.00 0.00 3.82
308 387 3.892588 TGATAGGTACAGACACACACACA 59.107 43.478 0.00 0.00 0.00 3.72
309 388 4.514781 TGATAGGTACAGACACACACAC 57.485 45.455 0.00 0.00 0.00 3.82
310 389 4.159693 GGATGATAGGTACAGACACACACA 59.840 45.833 0.00 0.00 0.00 3.72
311 390 4.441634 GGGATGATAGGTACAGACACACAC 60.442 50.000 0.00 0.00 0.00 3.82
312 391 3.704566 GGGATGATAGGTACAGACACACA 59.295 47.826 0.00 0.00 0.00 3.72
313 392 3.961408 AGGGATGATAGGTACAGACACAC 59.039 47.826 0.00 0.00 0.00 3.82
314 393 4.265856 AGGGATGATAGGTACAGACACA 57.734 45.455 0.00 0.00 0.00 3.72
315 394 6.919775 ATAAGGGATGATAGGTACAGACAC 57.080 41.667 0.00 0.00 0.00 3.67
316 395 7.306013 AGAATAAGGGATGATAGGTACAGACA 58.694 38.462 0.00 0.00 0.00 3.41
317 396 7.784470 AGAATAAGGGATGATAGGTACAGAC 57.216 40.000 0.00 0.00 0.00 3.51
318 397 7.235606 CCAAGAATAAGGGATGATAGGTACAGA 59.764 40.741 0.00 0.00 0.00 3.41
319 398 7.016661 ACCAAGAATAAGGGATGATAGGTACAG 59.983 40.741 0.00 0.00 0.00 2.74
389 469 2.789409 AAGTTTACAGCCAGCCTAGG 57.211 50.000 3.67 3.67 0.00 3.02
432 624 0.475632 ACATCAACCTCCACTGGGGA 60.476 55.000 0.00 0.00 45.89 4.81
433 625 0.405585 AACATCAACCTCCACTGGGG 59.594 55.000 0.00 0.00 38.37 4.96
459 651 5.215160 CAGTCCAAGCATGTAACTTTCAAC 58.785 41.667 0.00 0.00 0.00 3.18
505 697 0.601558 TTGCGTCTGGTACCTCTCAC 59.398 55.000 14.36 3.43 0.00 3.51
586 781 2.512692 TCCTTGTGGTGATGGATTGG 57.487 50.000 0.00 0.00 34.23 3.16
644 860 3.307059 CCCCACCTGTTCACAAAACAAAA 60.307 43.478 0.00 0.00 0.00 2.44
645 861 2.234908 CCCCACCTGTTCACAAAACAAA 59.765 45.455 0.00 0.00 0.00 2.83
647 863 1.479709 CCCCACCTGTTCACAAAACA 58.520 50.000 0.00 0.00 0.00 2.83
650 866 1.456705 GCCCCCACCTGTTCACAAA 60.457 57.895 0.00 0.00 0.00 2.83
790 1018 3.418913 CACGACGCCGGCATTCAA 61.419 61.111 28.98 0.00 40.78 2.69
829 1065 2.265739 GCACCGAGACATGGAGCA 59.734 61.111 0.00 0.00 41.94 4.26
1428 1679 2.125229 ATGAGCAGCAGCAGGTCG 60.125 61.111 11.86 0.00 45.49 4.79
1504 1755 3.338250 ATGGCATGGGTCACGGGT 61.338 61.111 0.00 0.00 0.00 5.28
1529 1789 1.079819 CCGTACAGGTGCTGAGGTG 60.080 63.158 0.00 0.00 35.18 4.00
1531 1791 2.125512 GCCGTACAGGTGCTGAGG 60.126 66.667 0.00 0.00 43.70 3.86
1532 1792 2.507102 CGCCGTACAGGTGCTGAG 60.507 66.667 4.73 0.00 44.46 3.35
1538 1798 2.359850 TCCGTACGCCGTACAGGT 60.360 61.111 25.26 0.00 43.70 4.00
1597 1861 4.118995 CGCAGGCCACCGTACGTA 62.119 66.667 15.21 0.00 0.00 3.57
1651 1915 1.746470 TGAACGGACGATCTAGCTCA 58.254 50.000 0.00 0.00 0.00 4.26
1694 1965 5.765182 ACACCAACCACATCTTCTAGAAAAG 59.235 40.000 6.63 2.09 0.00 2.27
1697 1968 4.974645 ACACCAACCACATCTTCTAGAA 57.025 40.909 4.81 4.81 0.00 2.10
1698 1969 4.082408 CGTACACCAACCACATCTTCTAGA 60.082 45.833 0.00 0.00 0.00 2.43
1700 1971 3.615592 GCGTACACCAACCACATCTTCTA 60.616 47.826 0.00 0.00 0.00 2.10
1701 1972 2.870435 GCGTACACCAACCACATCTTCT 60.870 50.000 0.00 0.00 0.00 2.85
1702 1973 1.463444 GCGTACACCAACCACATCTTC 59.537 52.381 0.00 0.00 0.00 2.87
1703 1974 1.202710 TGCGTACACCAACCACATCTT 60.203 47.619 0.00 0.00 0.00 2.40
1704 1975 0.394938 TGCGTACACCAACCACATCT 59.605 50.000 0.00 0.00 0.00 2.90
1705 1976 0.515564 GTGCGTACACCAACCACATC 59.484 55.000 0.00 0.00 41.21 3.06
1706 1977 1.225376 CGTGCGTACACCAACCACAT 61.225 55.000 4.09 0.00 44.40 3.21
1714 1985 1.514443 GCTCTCTCGTGCGTACACC 60.514 63.158 4.09 0.00 44.40 4.16
1739 2010 2.182516 ACCAGCTAAGCTCCATACCT 57.817 50.000 0.00 0.00 36.40 3.08
1852 2131 1.934463 CAAGCGAGAACAACGTGCT 59.066 52.632 0.00 0.00 35.92 4.40
1918 2209 0.030638 GACAGAGAGATCTCCAGCGC 59.969 60.000 19.30 0.00 43.88 5.92
1919 2210 1.603802 GAGACAGAGAGATCTCCAGCG 59.396 57.143 19.30 8.14 43.88 5.18
1920 2211 1.603802 CGAGACAGAGAGATCTCCAGC 59.396 57.143 19.30 9.20 43.88 4.85
1921 2212 2.613595 CACGAGACAGAGAGATCTCCAG 59.386 54.545 19.30 11.54 43.88 3.86
1922 2213 2.637947 CACGAGACAGAGAGATCTCCA 58.362 52.381 19.30 0.00 43.88 3.86
1923 2214 1.333619 GCACGAGACAGAGAGATCTCC 59.666 57.143 19.30 10.71 43.88 3.71
1924 2215 1.003972 CGCACGAGACAGAGAGATCTC 60.004 57.143 15.29 15.29 43.17 2.75
1925 2216 1.013596 CGCACGAGACAGAGAGATCT 58.986 55.000 0.00 0.00 0.00 2.75
1926 2217 0.591236 GCGCACGAGACAGAGAGATC 60.591 60.000 0.30 0.00 0.00 2.75
1927 2218 1.431440 GCGCACGAGACAGAGAGAT 59.569 57.895 0.30 0.00 0.00 2.75
2055 3970 0.596083 CCACGCTTCTGCTATCTCGG 60.596 60.000 0.00 0.00 36.97 4.63
2056 3971 0.382158 TCCACGCTTCTGCTATCTCG 59.618 55.000 0.00 0.00 36.97 4.04
2057 3972 2.586258 TTCCACGCTTCTGCTATCTC 57.414 50.000 0.00 0.00 36.97 2.75
2066 3981 3.798202 AGATCCTGTATTTCCACGCTTC 58.202 45.455 0.00 0.00 0.00 3.86
2097 4012 3.509137 TTCCACCCACGTCGTGCTC 62.509 63.158 20.01 0.00 31.34 4.26
2098 4013 3.515316 CTTCCACCCACGTCGTGCT 62.515 63.158 20.01 3.92 31.34 4.40
2099 4014 3.041940 CTTCCACCCACGTCGTGC 61.042 66.667 20.01 0.00 31.34 5.34
2100 4015 2.357034 CCTTCCACCCACGTCGTG 60.357 66.667 18.54 18.54 0.00 4.35
2101 4016 4.309950 GCCTTCCACCCACGTCGT 62.310 66.667 0.00 0.00 0.00 4.34
2102 4017 3.818121 TTGCCTTCCACCCACGTCG 62.818 63.158 0.00 0.00 0.00 5.12
2103 4018 1.966451 CTTGCCTTCCACCCACGTC 60.966 63.158 0.00 0.00 0.00 4.34
2104 4019 2.113139 CTTGCCTTCCACCCACGT 59.887 61.111 0.00 0.00 0.00 4.49
2105 4020 2.672996 CCTTGCCTTCCACCCACG 60.673 66.667 0.00 0.00 0.00 4.94
2106 4021 2.283173 CCCTTGCCTTCCACCCAC 60.283 66.667 0.00 0.00 0.00 4.61
2107 4022 2.399607 AACCCTTGCCTTCCACCCA 61.400 57.895 0.00 0.00 0.00 4.51
2108 4023 1.908299 CAACCCTTGCCTTCCACCC 60.908 63.158 0.00 0.00 0.00 4.61
2109 4024 1.908299 CCAACCCTTGCCTTCCACC 60.908 63.158 0.00 0.00 0.00 4.61
2110 4025 1.152546 ACCAACCCTTGCCTTCCAC 60.153 57.895 0.00 0.00 0.00 4.02
2111 4026 1.152567 CACCAACCCTTGCCTTCCA 60.153 57.895 0.00 0.00 0.00 3.53
2112 4027 1.908299 CCACCAACCCTTGCCTTCC 60.908 63.158 0.00 0.00 0.00 3.46
2113 4028 1.908299 CCCACCAACCCTTGCCTTC 60.908 63.158 0.00 0.00 0.00 3.46
2114 4029 2.201210 CCCACCAACCCTTGCCTT 59.799 61.111 0.00 0.00 0.00 4.35
2115 4030 3.914713 CCCCACCAACCCTTGCCT 61.915 66.667 0.00 0.00 0.00 4.75
2116 4031 2.746947 AATCCCCACCAACCCTTGCC 62.747 60.000 0.00 0.00 0.00 4.52
2117 4032 0.835971 AAATCCCCACCAACCCTTGC 60.836 55.000 0.00 0.00 0.00 4.01
2118 4033 0.975887 CAAATCCCCACCAACCCTTG 59.024 55.000 0.00 0.00 0.00 3.61
2119 4034 0.565674 ACAAATCCCCACCAACCCTT 59.434 50.000 0.00 0.00 0.00 3.95
2120 4035 0.565674 AACAAATCCCCACCAACCCT 59.434 50.000 0.00 0.00 0.00 4.34
2121 4036 0.684535 CAACAAATCCCCACCAACCC 59.315 55.000 0.00 0.00 0.00 4.11
2122 4037 0.034756 GCAACAAATCCCCACCAACC 59.965 55.000 0.00 0.00 0.00 3.77
2123 4038 0.755686 TGCAACAAATCCCCACCAAC 59.244 50.000 0.00 0.00 0.00 3.77
2124 4039 0.755686 GTGCAACAAATCCCCACCAA 59.244 50.000 0.00 0.00 36.32 3.67
2125 4040 1.118356 GGTGCAACAAATCCCCACCA 61.118 55.000 0.00 0.00 44.07 4.17
2126 4041 1.671166 GGTGCAACAAATCCCCACC 59.329 57.895 0.00 0.00 39.98 4.61
2127 4042 1.288752 CGGTGCAACAAATCCCCAC 59.711 57.895 0.98 0.00 39.98 4.61
2128 4043 1.905843 CCGGTGCAACAAATCCCCA 60.906 57.895 0.98 0.00 39.98 4.96
2129 4044 1.182385 TTCCGGTGCAACAAATCCCC 61.182 55.000 0.98 0.00 39.98 4.81
2130 4045 0.243636 CTTCCGGTGCAACAAATCCC 59.756 55.000 0.98 0.00 39.98 3.85
2131 4046 0.958822 ACTTCCGGTGCAACAAATCC 59.041 50.000 0.98 0.00 39.98 3.01
2132 4047 1.606668 TCACTTCCGGTGCAACAAATC 59.393 47.619 0.98 0.00 44.98 2.17
2133 4048 1.686355 TCACTTCCGGTGCAACAAAT 58.314 45.000 0.98 0.00 44.98 2.32
2134 4049 1.464734 TTCACTTCCGGTGCAACAAA 58.535 45.000 0.98 0.00 44.98 2.83
2135 4050 1.464734 TTTCACTTCCGGTGCAACAA 58.535 45.000 0.98 0.00 44.98 2.83
2136 4051 1.403679 CTTTTCACTTCCGGTGCAACA 59.596 47.619 0.98 0.00 44.98 3.33
2137 4052 1.864029 GCTTTTCACTTCCGGTGCAAC 60.864 52.381 0.00 0.00 44.98 4.17
2138 4053 0.383949 GCTTTTCACTTCCGGTGCAA 59.616 50.000 0.00 0.00 44.98 4.08
2139 4054 1.452145 GGCTTTTCACTTCCGGTGCA 61.452 55.000 0.00 0.00 44.98 4.57
2140 4055 1.172812 AGGCTTTTCACTTCCGGTGC 61.173 55.000 0.00 0.00 44.98 5.01
2141 4056 0.875059 GAGGCTTTTCACTTCCGGTG 59.125 55.000 0.00 0.00 46.60 4.94
2142 4057 0.250770 GGAGGCTTTTCACTTCCGGT 60.251 55.000 0.00 0.00 0.00 5.28
2143 4058 0.250727 TGGAGGCTTTTCACTTCCGG 60.251 55.000 0.00 0.00 0.00 5.14
2144 4059 1.604604 TTGGAGGCTTTTCACTTCCG 58.395 50.000 0.00 0.00 0.00 4.30
2145 4060 2.297315 CCTTTGGAGGCTTTTCACTTCC 59.703 50.000 0.00 0.00 35.94 3.46
2146 4061 3.222603 TCCTTTGGAGGCTTTTCACTTC 58.777 45.455 0.00 0.00 43.21 3.01
2147 4062 3.312736 TCCTTTGGAGGCTTTTCACTT 57.687 42.857 0.00 0.00 43.21 3.16
2148 4063 2.959030 GTTCCTTTGGAGGCTTTTCACT 59.041 45.455 0.00 0.00 43.21 3.41
2149 4064 2.959030 AGTTCCTTTGGAGGCTTTTCAC 59.041 45.455 0.00 0.00 43.21 3.18
2150 4065 2.958355 CAGTTCCTTTGGAGGCTTTTCA 59.042 45.455 0.00 0.00 43.21 2.69
2151 4066 2.288457 GCAGTTCCTTTGGAGGCTTTTC 60.288 50.000 0.00 0.00 43.21 2.29
2152 4067 1.688735 GCAGTTCCTTTGGAGGCTTTT 59.311 47.619 0.00 0.00 43.21 2.27
2153 4068 1.332195 GCAGTTCCTTTGGAGGCTTT 58.668 50.000 0.00 0.00 43.21 3.51
2154 4069 0.890996 CGCAGTTCCTTTGGAGGCTT 60.891 55.000 0.00 0.00 43.21 4.35
2155 4070 1.302832 CGCAGTTCCTTTGGAGGCT 60.303 57.895 0.00 0.00 43.21 4.58
2156 4071 2.335712 CCGCAGTTCCTTTGGAGGC 61.336 63.158 0.00 0.00 43.21 4.70
2157 4072 0.537371 AACCGCAGTTCCTTTGGAGG 60.537 55.000 0.00 0.00 45.02 4.30
2158 4073 0.593128 CAACCGCAGTTCCTTTGGAG 59.407 55.000 0.00 0.00 32.45 3.86
2159 4074 1.452145 GCAACCGCAGTTCCTTTGGA 61.452 55.000 0.00 0.00 38.36 3.53
2160 4075 1.007387 GCAACCGCAGTTCCTTTGG 60.007 57.895 0.00 0.00 38.36 3.28
2161 4076 0.318107 CAGCAACCGCAGTTCCTTTG 60.318 55.000 0.00 0.00 42.27 2.77
2162 4077 2.032981 CAGCAACCGCAGTTCCTTT 58.967 52.632 0.00 0.00 42.27 3.11
2163 4078 2.555547 GCAGCAACCGCAGTTCCTT 61.556 57.895 0.00 0.00 42.27 3.36
2164 4079 2.980233 GCAGCAACCGCAGTTCCT 60.980 61.111 0.00 0.00 42.27 3.36
2165 4080 4.043200 GGCAGCAACCGCAGTTCC 62.043 66.667 0.00 0.00 42.27 3.62
2166 4081 2.629656 ATGGCAGCAACCGCAGTTC 61.630 57.895 0.00 0.00 42.27 3.01
2167 4082 2.598394 ATGGCAGCAACCGCAGTT 60.598 55.556 0.00 0.00 42.27 3.16
2168 4083 3.367743 CATGGCAGCAACCGCAGT 61.368 61.111 0.00 0.00 42.27 4.40
2169 4084 4.789075 GCATGGCAGCAACCGCAG 62.789 66.667 0.00 0.00 42.27 5.18
2176 4091 3.066190 GCTCCTTGCATGGCAGCA 61.066 61.111 24.91 7.40 40.61 4.41
2177 4092 4.189188 CGCTCCTTGCATGGCAGC 62.189 66.667 22.26 22.26 40.61 5.25
2178 4093 2.437180 TCGCTCCTTGCATGGCAG 60.437 61.111 13.75 12.33 40.61 4.85
2179 4094 2.437180 CTCGCTCCTTGCATGGCA 60.437 61.111 13.75 0.00 43.06 4.92
2180 4095 2.124983 TCTCGCTCCTTGCATGGC 60.125 61.111 13.75 2.49 43.06 4.40
2181 4096 0.106335 ATCTCTCGCTCCTTGCATGG 59.894 55.000 12.41 12.41 43.06 3.66
2182 4097 1.500108 GATCTCTCGCTCCTTGCATG 58.500 55.000 0.00 0.00 43.06 4.06
2183 4098 0.392336 GGATCTCTCGCTCCTTGCAT 59.608 55.000 0.00 0.00 43.06 3.96
2184 4099 1.819229 GGATCTCTCGCTCCTTGCA 59.181 57.895 0.00 0.00 43.06 4.08
2185 4100 1.299773 CGGATCTCTCGCTCCTTGC 60.300 63.158 0.00 0.00 38.57 4.01
2186 4101 0.741326 TTCGGATCTCTCGCTCCTTG 59.259 55.000 0.00 0.00 0.00 3.61
2187 4102 1.028905 CTTCGGATCTCTCGCTCCTT 58.971 55.000 0.00 0.00 0.00 3.36
2188 4103 0.181587 TCTTCGGATCTCTCGCTCCT 59.818 55.000 0.00 0.00 0.00 3.69
2189 4104 0.309612 GTCTTCGGATCTCTCGCTCC 59.690 60.000 0.00 0.00 0.00 4.70
2190 4105 1.018148 TGTCTTCGGATCTCTCGCTC 58.982 55.000 0.00 0.00 0.00 5.03
2191 4106 1.133407 GTTGTCTTCGGATCTCTCGCT 59.867 52.381 0.00 0.00 0.00 4.93
2192 4107 1.135373 TGTTGTCTTCGGATCTCTCGC 60.135 52.381 0.00 0.00 0.00 5.03
2193 4108 2.921634 TGTTGTCTTCGGATCTCTCG 57.078 50.000 0.00 0.00 0.00 4.04
2194 4109 2.926838 GCTTGTTGTCTTCGGATCTCTC 59.073 50.000 0.00 0.00 0.00 3.20
2195 4110 2.300152 TGCTTGTTGTCTTCGGATCTCT 59.700 45.455 0.00 0.00 0.00 3.10
2196 4111 2.413453 GTGCTTGTTGTCTTCGGATCTC 59.587 50.000 0.00 0.00 0.00 2.75
2197 4112 2.417719 GTGCTTGTTGTCTTCGGATCT 58.582 47.619 0.00 0.00 0.00 2.75
2198 4113 1.126846 CGTGCTTGTTGTCTTCGGATC 59.873 52.381 0.00 0.00 0.00 3.36
2199 4114 1.148310 CGTGCTTGTTGTCTTCGGAT 58.852 50.000 0.00 0.00 0.00 4.18
2200 4115 1.495584 GCGTGCTTGTTGTCTTCGGA 61.496 55.000 0.00 0.00 0.00 4.55
2201 4116 1.082756 GCGTGCTTGTTGTCTTCGG 60.083 57.895 0.00 0.00 0.00 4.30
2202 4117 1.082756 GGCGTGCTTGTTGTCTTCG 60.083 57.895 0.00 0.00 0.00 3.79
2203 4118 0.593128 ATGGCGTGCTTGTTGTCTTC 59.407 50.000 0.00 0.00 0.00 2.87
2204 4119 0.311790 CATGGCGTGCTTGTTGTCTT 59.688 50.000 0.00 0.00 0.00 3.01
2205 4120 1.951510 CATGGCGTGCTTGTTGTCT 59.048 52.632 0.00 0.00 0.00 3.41
2206 4121 4.539152 CATGGCGTGCTTGTTGTC 57.461 55.556 0.00 0.00 0.00 3.18
2237 4152 0.789383 CGCGAATTTTCACGGAGCAC 60.789 55.000 0.00 0.00 0.00 4.40
2238 4153 0.946700 TCGCGAATTTTCACGGAGCA 60.947 50.000 6.20 0.00 33.87 4.26
2239 4154 0.247301 CTCGCGAATTTTCACGGAGC 60.247 55.000 11.33 0.00 33.87 4.70
2240 4155 0.370273 CCTCGCGAATTTTCACGGAG 59.630 55.000 11.33 0.00 33.87 4.63
2241 4156 1.632046 GCCTCGCGAATTTTCACGGA 61.632 55.000 11.33 0.00 33.87 4.69
2242 4157 1.226018 GCCTCGCGAATTTTCACGG 60.226 57.895 11.33 6.31 33.87 4.94
2243 4158 0.789383 GTGCCTCGCGAATTTTCACG 60.789 55.000 11.33 0.00 34.32 4.35
2244 4159 0.789383 CGTGCCTCGCGAATTTTCAC 60.789 55.000 11.33 12.23 39.94 3.18
2245 4160 1.495509 CGTGCCTCGCGAATTTTCA 59.504 52.632 11.33 0.59 39.94 2.69
2246 4161 4.342964 CGTGCCTCGCGAATTTTC 57.657 55.556 11.33 0.00 39.94 2.29
2255 4170 2.159585 TGTTTCATAAATGCGTGCCTCG 60.160 45.455 0.00 0.00 43.12 4.63
2256 4171 3.485947 TGTTTCATAAATGCGTGCCTC 57.514 42.857 0.00 0.00 0.00 4.70
2257 4172 3.932545 TTGTTTCATAAATGCGTGCCT 57.067 38.095 0.00 0.00 0.00 4.75
2258 4173 4.981389 TTTTGTTTCATAAATGCGTGCC 57.019 36.364 0.00 0.00 0.00 5.01
2259 4174 6.819931 CATTTTTGTTTCATAAATGCGTGC 57.180 33.333 10.70 0.00 36.55 5.34
2279 4194 9.464714 CGTGTAAGTCTTTATATGTCTAGCATT 57.535 33.333 5.22 0.00 38.94 3.56
2280 4195 7.595502 GCGTGTAAGTCTTTATATGTCTAGCAT 59.404 37.037 0.00 5.25 41.42 3.79
2281 4196 6.916387 GCGTGTAAGTCTTTATATGTCTAGCA 59.084 38.462 0.00 0.00 0.00 3.49
2282 4197 7.140048 AGCGTGTAAGTCTTTATATGTCTAGC 58.860 38.462 0.00 0.00 0.00 3.42
2283 4198 9.517609 AAAGCGTGTAAGTCTTTATATGTCTAG 57.482 33.333 0.00 0.00 0.00 2.43
2284 4199 9.865321 AAAAGCGTGTAAGTCTTTATATGTCTA 57.135 29.630 0.00 0.00 30.66 2.59
2285 4200 8.773404 AAAAGCGTGTAAGTCTTTATATGTCT 57.227 30.769 0.00 0.00 30.66 3.41
2286 4201 9.897349 GTAAAAGCGTGTAAGTCTTTATATGTC 57.103 33.333 0.00 0.00 30.66 3.06
2287 4202 9.426837 TGTAAAAGCGTGTAAGTCTTTATATGT 57.573 29.630 0.00 0.00 30.66 2.29
2288 4203 9.685005 GTGTAAAAGCGTGTAAGTCTTTATATG 57.315 33.333 0.00 0.00 30.66 1.78
2289 4204 8.589629 CGTGTAAAAGCGTGTAAGTCTTTATAT 58.410 33.333 0.00 0.00 30.66 0.86
2290 4205 7.594758 ACGTGTAAAAGCGTGTAAGTCTTTATA 59.405 33.333 0.00 0.00 40.03 0.98
2291 4206 6.421801 ACGTGTAAAAGCGTGTAAGTCTTTAT 59.578 34.615 0.00 0.00 40.03 1.40
2292 4207 5.748152 ACGTGTAAAAGCGTGTAAGTCTTTA 59.252 36.000 0.00 0.00 40.03 1.85
2293 4208 4.567959 ACGTGTAAAAGCGTGTAAGTCTTT 59.432 37.500 0.00 0.00 40.03 2.52
2294 4209 4.114794 ACGTGTAAAAGCGTGTAAGTCTT 58.885 39.130 0.00 0.00 40.03 3.01
2295 4210 3.709987 ACGTGTAAAAGCGTGTAAGTCT 58.290 40.909 0.00 0.00 40.03 3.24
2296 4211 4.440068 GAACGTGTAAAAGCGTGTAAGTC 58.560 43.478 0.00 0.00 41.42 3.01
2297 4212 3.245990 GGAACGTGTAAAAGCGTGTAAGT 59.754 43.478 0.00 0.00 41.42 2.24
2298 4213 3.492011 AGGAACGTGTAAAAGCGTGTAAG 59.508 43.478 0.00 0.00 41.42 2.34
2299 4214 3.456280 AGGAACGTGTAAAAGCGTGTAA 58.544 40.909 0.00 0.00 41.42 2.41
2300 4215 3.096489 AGGAACGTGTAAAAGCGTGTA 57.904 42.857 0.00 0.00 41.42 2.90
2301 4216 1.944032 AGGAACGTGTAAAAGCGTGT 58.056 45.000 0.00 0.00 41.42 4.49
2302 4217 2.349155 GGAAGGAACGTGTAAAAGCGTG 60.349 50.000 0.00 0.00 41.42 5.34
2303 4218 1.869132 GGAAGGAACGTGTAAAAGCGT 59.131 47.619 0.00 0.00 43.64 5.07
2304 4219 1.868498 TGGAAGGAACGTGTAAAAGCG 59.132 47.619 0.00 0.00 0.00 4.68
2305 4220 3.751698 AGATGGAAGGAACGTGTAAAAGC 59.248 43.478 0.00 0.00 0.00 3.51
2306 4221 6.425721 TGTTAGATGGAAGGAACGTGTAAAAG 59.574 38.462 0.00 0.00 0.00 2.27
2307 4222 6.289834 TGTTAGATGGAAGGAACGTGTAAAA 58.710 36.000 0.00 0.00 0.00 1.52
2308 4223 5.856156 TGTTAGATGGAAGGAACGTGTAAA 58.144 37.500 0.00 0.00 0.00 2.01
2309 4224 5.471556 TGTTAGATGGAAGGAACGTGTAA 57.528 39.130 0.00 0.00 0.00 2.41
2310 4225 5.232463 GTTGTTAGATGGAAGGAACGTGTA 58.768 41.667 0.00 0.00 0.00 2.90
2311 4226 4.062991 GTTGTTAGATGGAAGGAACGTGT 58.937 43.478 0.00 0.00 0.00 4.49
2312 4227 3.435671 GGTTGTTAGATGGAAGGAACGTG 59.564 47.826 0.00 0.00 0.00 4.49
2313 4228 3.071892 TGGTTGTTAGATGGAAGGAACGT 59.928 43.478 0.00 0.00 0.00 3.99
2314 4229 3.670625 TGGTTGTTAGATGGAAGGAACG 58.329 45.455 0.00 0.00 0.00 3.95
2315 4230 5.710099 TGATTGGTTGTTAGATGGAAGGAAC 59.290 40.000 0.00 0.00 0.00 3.62
2316 4231 5.710099 GTGATTGGTTGTTAGATGGAAGGAA 59.290 40.000 0.00 0.00 0.00 3.36
2317 4232 5.222027 TGTGATTGGTTGTTAGATGGAAGGA 60.222 40.000 0.00 0.00 0.00 3.36
2318 4233 5.009631 TGTGATTGGTTGTTAGATGGAAGG 58.990 41.667 0.00 0.00 0.00 3.46
2319 4234 6.573664 TTGTGATTGGTTGTTAGATGGAAG 57.426 37.500 0.00 0.00 0.00 3.46
2320 4235 6.239176 GGTTTGTGATTGGTTGTTAGATGGAA 60.239 38.462 0.00 0.00 0.00 3.53
2321 4236 5.242838 GGTTTGTGATTGGTTGTTAGATGGA 59.757 40.000 0.00 0.00 0.00 3.41
2322 4237 5.243730 AGGTTTGTGATTGGTTGTTAGATGG 59.756 40.000 0.00 0.00 0.00 3.51
2323 4238 6.207417 AGAGGTTTGTGATTGGTTGTTAGATG 59.793 38.462 0.00 0.00 0.00 2.90
2324 4239 6.306987 AGAGGTTTGTGATTGGTTGTTAGAT 58.693 36.000 0.00 0.00 0.00 1.98
2325 4240 5.690865 AGAGGTTTGTGATTGGTTGTTAGA 58.309 37.500 0.00 0.00 0.00 2.10
2326 4241 5.048713 GGAGAGGTTTGTGATTGGTTGTTAG 60.049 44.000 0.00 0.00 0.00 2.34
2327 4242 4.825085 GGAGAGGTTTGTGATTGGTTGTTA 59.175 41.667 0.00 0.00 0.00 2.41
2328 4243 3.636764 GGAGAGGTTTGTGATTGGTTGTT 59.363 43.478 0.00 0.00 0.00 2.83
2329 4244 3.222603 GGAGAGGTTTGTGATTGGTTGT 58.777 45.455 0.00 0.00 0.00 3.32
2330 4245 2.558359 GGGAGAGGTTTGTGATTGGTTG 59.442 50.000 0.00 0.00 0.00 3.77
2331 4246 2.490902 GGGGAGAGGTTTGTGATTGGTT 60.491 50.000 0.00 0.00 0.00 3.67
2332 4247 1.075536 GGGGAGAGGTTTGTGATTGGT 59.924 52.381 0.00 0.00 0.00 3.67
2333 4248 1.616994 GGGGGAGAGGTTTGTGATTGG 60.617 57.143 0.00 0.00 0.00 3.16
2334 4249 1.839424 GGGGGAGAGGTTTGTGATTG 58.161 55.000 0.00 0.00 0.00 2.67
2355 4270 1.957113 GCCCACTCCCCTGAAAATCAG 60.957 57.143 0.32 0.32 43.91 2.90
2356 4271 0.039618 GCCCACTCCCCTGAAAATCA 59.960 55.000 0.00 0.00 0.00 2.57
2357 4272 0.684479 GGCCCACTCCCCTGAAAATC 60.684 60.000 0.00 0.00 0.00 2.17
2358 4273 1.388133 GGCCCACTCCCCTGAAAAT 59.612 57.895 0.00 0.00 0.00 1.82
2359 4274 2.851045 GGCCCACTCCCCTGAAAA 59.149 61.111 0.00 0.00 0.00 2.29
2360 4275 3.646715 CGGCCCACTCCCCTGAAA 61.647 66.667 0.00 0.00 0.00 2.69
2361 4276 4.974438 ACGGCCCACTCCCCTGAA 62.974 66.667 0.00 0.00 0.00 3.02
2377 4292 0.179081 GGTCAATAGGTGAGCGGGAC 60.179 60.000 0.00 0.00 44.38 4.46
2378 4293 2.208527 GGTCAATAGGTGAGCGGGA 58.791 57.895 0.00 0.00 44.38 5.14
2379 4294 4.857251 GGTCAATAGGTGAGCGGG 57.143 61.111 0.00 0.00 44.38 6.13
2383 4298 4.848357 ACCTTGATTGGTCAATAGGTGAG 58.152 43.478 14.14 2.65 41.74 3.51
2384 4299 4.927267 ACCTTGATTGGTCAATAGGTGA 57.073 40.909 14.14 0.00 41.74 4.02
2385 4300 6.127730 GGTTAACCTTGATTGGTCAATAGGTG 60.128 42.308 17.83 1.88 42.22 4.00
2386 4301 5.949952 GGTTAACCTTGATTGGTCAATAGGT 59.050 40.000 17.83 10.70 43.99 3.08
2387 4302 5.949354 TGGTTAACCTTGATTGGTCAATAGG 59.051 40.000 24.78 9.71 43.08 2.57
2388 4303 7.201821 GGATGGTTAACCTTGATTGGTCAATAG 60.202 40.741 24.78 0.00 43.08 1.73
2389 4304 6.605594 GGATGGTTAACCTTGATTGGTCAATA 59.394 38.462 24.78 0.07 43.08 1.90
2390 4305 5.422012 GGATGGTTAACCTTGATTGGTCAAT 59.578 40.000 24.78 5.84 43.08 2.57
2391 4306 4.770010 GGATGGTTAACCTTGATTGGTCAA 59.230 41.667 24.78 0.73 41.89 3.18
2392 4307 4.044065 AGGATGGTTAACCTTGATTGGTCA 59.956 41.667 24.78 1.27 39.83 4.02
2393 4308 4.399303 CAGGATGGTTAACCTTGATTGGTC 59.601 45.833 24.78 9.78 39.83 4.02
2394 4309 4.202673 ACAGGATGGTTAACCTTGATTGGT 60.203 41.667 24.78 11.57 43.62 3.67
2395 4310 4.344104 ACAGGATGGTTAACCTTGATTGG 58.656 43.478 24.78 11.00 43.62 3.16
2396 4311 7.461182 TTTACAGGATGGTTAACCTTGATTG 57.539 36.000 24.78 17.36 43.62 2.67
2397 4312 7.309805 GCTTTTACAGGATGGTTAACCTTGATT 60.310 37.037 24.78 8.08 43.62 2.57
2398 4313 6.152831 GCTTTTACAGGATGGTTAACCTTGAT 59.847 38.462 24.78 10.77 43.62 2.57
2399 4314 5.475564 GCTTTTACAGGATGGTTAACCTTGA 59.524 40.000 24.78 5.89 43.62 3.02
2400 4315 5.336451 GGCTTTTACAGGATGGTTAACCTTG 60.336 44.000 24.78 18.27 43.62 3.61
2401 4316 4.770531 GGCTTTTACAGGATGGTTAACCTT 59.229 41.667 24.78 18.87 43.62 3.50
2402 4317 4.044191 AGGCTTTTACAGGATGGTTAACCT 59.956 41.667 24.78 10.91 43.62 3.50
2403 4318 4.157840 CAGGCTTTTACAGGATGGTTAACC 59.842 45.833 18.27 18.27 43.62 2.85
2404 4319 4.765339 ACAGGCTTTTACAGGATGGTTAAC 59.235 41.667 0.00 0.00 43.62 2.01
2405 4320 4.993028 ACAGGCTTTTACAGGATGGTTAA 58.007 39.130 0.00 0.00 43.62 2.01
2406 4321 4.650972 ACAGGCTTTTACAGGATGGTTA 57.349 40.909 0.00 0.00 43.62 2.85
2407 4322 3.525800 ACAGGCTTTTACAGGATGGTT 57.474 42.857 0.00 0.00 43.62 3.67
2408 4323 4.650972 TTACAGGCTTTTACAGGATGGT 57.349 40.909 0.00 0.00 43.62 3.55
2409 4324 5.220854 CGATTTACAGGCTTTTACAGGATGG 60.221 44.000 0.00 0.00 43.62 3.51
2410 4325 5.354234 ACGATTTACAGGCTTTTACAGGATG 59.646 40.000 0.00 0.00 46.00 3.51
2411 4326 5.497474 ACGATTTACAGGCTTTTACAGGAT 58.503 37.500 0.00 0.00 0.00 3.24
2412 4327 4.901868 ACGATTTACAGGCTTTTACAGGA 58.098 39.130 0.00 0.00 0.00 3.86
2413 4328 5.622770 AACGATTTACAGGCTTTTACAGG 57.377 39.130 0.00 0.00 0.00 4.00
2414 4329 6.435428 ACAAACGATTTACAGGCTTTTACAG 58.565 36.000 0.00 0.00 0.00 2.74
2415 4330 6.380095 ACAAACGATTTACAGGCTTTTACA 57.620 33.333 0.00 0.00 0.00 2.41
2416 4331 7.771219 GTACAAACGATTTACAGGCTTTTAC 57.229 36.000 0.00 0.00 0.00 2.01
2433 4348 2.723618 CGGCAATGCTACACGTACAAAC 60.724 50.000 4.82 0.00 0.00 2.93
2434 4349 1.461512 CGGCAATGCTACACGTACAAA 59.538 47.619 4.82 0.00 0.00 2.83
2435 4350 1.072391 CGGCAATGCTACACGTACAA 58.928 50.000 4.82 0.00 0.00 2.41
2436 4351 0.038067 ACGGCAATGCTACACGTACA 60.038 50.000 4.82 0.00 35.85 2.90
2437 4352 1.073177 AACGGCAATGCTACACGTAC 58.927 50.000 4.82 0.00 36.69 3.67
2438 4353 1.798283 AAACGGCAATGCTACACGTA 58.202 45.000 4.82 0.00 36.69 3.57
2439 4354 1.798283 TAAACGGCAATGCTACACGT 58.202 45.000 4.82 3.02 39.74 4.49
2440 4355 2.350192 TCATAAACGGCAATGCTACACG 59.650 45.455 4.82 2.29 0.00 4.49
2441 4356 4.349663 TTCATAAACGGCAATGCTACAC 57.650 40.909 4.82 0.00 0.00 2.90
2442 4357 5.157781 GTTTTCATAAACGGCAATGCTACA 58.842 37.500 4.82 0.00 34.79 2.74
2443 4358 5.680479 GTTTTCATAAACGGCAATGCTAC 57.320 39.130 4.82 0.00 34.79 3.58
2454 4369 4.213482 AGGACTGCAGACGTTTTCATAAAC 59.787 41.667 23.35 0.00 40.19 2.01
2455 4370 4.385825 AGGACTGCAGACGTTTTCATAAA 58.614 39.130 23.35 0.00 0.00 1.40
2456 4371 3.994392 GAGGACTGCAGACGTTTTCATAA 59.006 43.478 23.35 0.00 0.00 1.90
2457 4372 3.585862 GAGGACTGCAGACGTTTTCATA 58.414 45.455 23.35 0.00 0.00 2.15
2458 4373 2.417719 GAGGACTGCAGACGTTTTCAT 58.582 47.619 23.35 3.24 0.00 2.57
2459 4374 1.865865 GAGGACTGCAGACGTTTTCA 58.134 50.000 23.35 0.00 0.00 2.69
2460 4375 0.784778 CGAGGACTGCAGACGTTTTC 59.215 55.000 23.35 5.91 0.00 2.29
2461 4376 0.387929 TCGAGGACTGCAGACGTTTT 59.612 50.000 23.35 0.00 0.00 2.43
2462 4377 0.603569 ATCGAGGACTGCAGACGTTT 59.396 50.000 23.35 3.30 0.00 3.60
2463 4378 0.109086 CATCGAGGACTGCAGACGTT 60.109 55.000 23.35 11.92 0.00 3.99
2464 4379 1.244697 ACATCGAGGACTGCAGACGT 61.245 55.000 23.35 16.66 0.00 4.34
2465 4380 0.799917 CACATCGAGGACTGCAGACG 60.800 60.000 23.35 18.71 0.00 4.18
2466 4381 0.244994 ACACATCGAGGACTGCAGAC 59.755 55.000 23.35 15.15 0.00 3.51
2467 4382 0.244721 CACACATCGAGGACTGCAGA 59.755 55.000 23.35 0.00 0.00 4.26
2468 4383 1.357258 GCACACATCGAGGACTGCAG 61.357 60.000 13.48 13.48 0.00 4.41
2469 4384 1.374631 GCACACATCGAGGACTGCA 60.375 57.895 3.06 0.00 0.00 4.41
2470 4385 2.103042 GGCACACATCGAGGACTGC 61.103 63.158 3.06 9.56 0.00 4.40
2471 4386 1.807165 CGGCACACATCGAGGACTG 60.807 63.158 3.06 0.00 0.00 3.51
2472 4387 2.276116 ACGGCACACATCGAGGACT 61.276 57.895 3.06 0.00 0.00 3.85
2473 4388 2.094659 CACGGCACACATCGAGGAC 61.095 63.158 3.06 0.00 0.00 3.85
2474 4389 1.604147 ATCACGGCACACATCGAGGA 61.604 55.000 3.06 0.00 0.00 3.71
2475 4390 1.148157 GATCACGGCACACATCGAGG 61.148 60.000 0.00 0.00 0.00 4.63
2476 4391 1.148157 GGATCACGGCACACATCGAG 61.148 60.000 0.00 0.00 0.00 4.04
2477 4392 1.153647 GGATCACGGCACACATCGA 60.154 57.895 0.00 0.00 0.00 3.59
2478 4393 0.811219 ATGGATCACGGCACACATCG 60.811 55.000 0.00 0.00 0.00 3.84
2479 4394 3.085208 ATGGATCACGGCACACATC 57.915 52.632 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.