>input_sequence_78256
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--------------------------------------------------ATGGCGAGCGTGGGCGCGTTGCTGATGGCC
GCGGTGCTGCCTCCGGTGGCCGCGCTGCTGATCGCGGTGGCCGTACGGGCGGCGGCGCGCGGGGTGGGCGCGCTGGCGCG
CGCGCACTACGCGTGGCCGGCGGAGTCGCCGTCCGTGCAGGCGCGGAAGTGCGGCAGGAGGGCGGCGCCGGAGCAGCCCG
ACCACGAGCTGCGCGTGTCGCGGCACCGCGGGGGCGCGGCGGTGGAGTGCGCGGTCTGCCTGAGCGGCGTGGGGGAGGGC
GACGAGGTGCGGGAGCTGCGGTGCCGGCACGTGTTCCACCGCGCCTGCCTCGACCGGTGGCTCGCGACGCCGCCGGCCAC
GTGCCCGCTCTGTCGCTCCCGCCTGCTGACGGCGCCGCCGGTAGAGGAGGAGGAGGAGGAGGAGCTGGACCTGGACTCCG
ACCTGCTGCTGCTCATGGCGTACGTGCACGGCGGCCGCGGCGGCGGCAGATGGTTCTGGTCGCCGTGA------------
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>chr2B_1_TraesCS2B01G115500
CCGAAGTTTGCTGTATCTTTTGTAAAGGGATGCGTGCATCACAACCTGTGATGGCCTTGCCGTGCCTACTCAAGTTTCTG
TACCG---TGAATCTGTGATGTGGCGATGACACTGTGAATGGATCGTCCCTTTCTTCGGTTTTCGATTTCTTCTTGTTCA
CTTGTCGCTGTATCCATGGCTAGTTTTTTCCAGCTGAACGTTACGTTACACCTTTGGTGAATCAGTGCATAATAGTACAT
CTGTCACCGACTGTATGATGAAAA-----------------CTTTGGTAGCAGTTTTAGTTTCTACAATATGTA------
----------------------------------------------------GATGATAATGTGTGTGTGTGTGTGTCTG
TACCTATCATCCCTTATTCTTGGTCAA-TTTTTCTTGTTCGCCTGGTTACTGTACACATGGACTAGGCC-----------
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---------------------CTAGGCTGGCTGTAAACTTTTCATTTGTCACGATTTATTGCCTCCCCAGTGGAGGTTGA
TGTTTCTTTGGTTGAAAGTTACATGCTTGGACTGCATTTACATCCTGCGTTTGCAAGTGAGAGGTACCAGACGCAACTTG
CATCTGGCATGCGTGATTGTGAGCAGCTTCACTGTTCTGGATAAT---ACGATCTGTGTACCAATCCATCACCACAAGGA
ATTTTTTTTTTAAAAGATCTAA---------------------CAGTTTCAAAAGGAAATTTTGTTTTGTGAACAGGTGG
GGG-----CCTGGACACTTGCAT------AGTAGTTGCATTGAAACTCAAGATCACGCGAGCTCTGACCGATACATAGAG
TAGAGTATTATCTTTTCTCTTT-GGGCTGGCGTCCTTGTCCATGAGAGGTGCCCGGATTGAATGCCGGCGTCGTGTCACA
CC--------CGAAGTCAAATCGATGCTCCATGTCTCGGTGCCGCACGCG------CGGCCTAGCTACCTACTTGATCTC
CATATATCGCGAGCCTAG----CTAGCTAGCTCTCGCCATTGCCGCACGCACGCGCAGAGCGACGAGGCGACACGTACGG
TGCGTGCGTGAACAGCCGAGGAGGGA-----AGAGAAGATCGACGAGGCCATGGCGAGCGTGGGCGCGTTGCTGATGGCC
GCGGTGCTGCCTCCGGTGGCCGCGCTGCTGATCGCGGTGGCCGTACGGGCGGCGGCGCGCGGGGTGGGCGCGCTGGCGCG
CGCGCACTACGCGTGGCCGGCGGAGTCGCCGTCCGTGCAGGCGCGGAAGTGCGGCAGGAGGGCGGCGCCGGAGCAGCCCG
ACCACGAGCTGCGCGTGTCGCGGCACCGCGGGGGCGCGGCGGTGGAGTGCGCGGTCTGCCTGAGCGGCGTGGGGGAGGGC
GACGAGGTGCGGGAGCTGCGGTGCCGGCACGTGTTCCACCGCGCCTGCCTCGACCGGTGGCTCGCGACGCCGCCGGCCAC
GTGCCCGCTCTGTCGCTCCCGCCTGCTGACGGCGCCGCCGGTAGAGGAGGAGGAGGAGGAGGAGCTGGACCTGGACTCCG
ACCTGCTGCTGCTCATGGCGTACGTGCACGGCGGCCGCGGCGGCGGCAGATGGTTCTGGTCGCCGTGATCGCCCACCCG-
-------TGACCCATGCCATGCC-CGAGCACCTCAGCACCTGTACGGCGTACGGACGCGTGTGCGTGCGTG----GTGCA
CCGGCACGCACGCATGCACGTACGTACGGTGGCCTGCGCGCACGTTCCCGGCGGTTTTTGTATATTGTTTTCTCTGAGCT
AGATCGT-------CCGTTCATTCCTCTTCTCCTTTCTTTCTTTCTTTTCTAGAAGATGTGGTTGGTGTACGCACGAGAG
AGCGGTGGGAGGTATGGAGCTTAGCTGGTTTTCTCGCAGTTTGTTAATG--------GCGCGTGCGCGCACGCATGCATG
GCAGGTTGGCAGAGCGTGGCGCCTGGCGGTCGCCACGTCGTCCGGGCGCGAGCACGTTGTTCTCGCTTGCCTCGACGTGT
GTCTCGGCGACGCGGCGTCCCCGCTCGCTCAC------------GAGAGCGCTGGAGATCTCTCTGTCTCGTGCGCGCGC
AGGTCGCAGGTCGCATCTCATCC--------TCTGGGTCTGGGGCT----------------------------------
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--------------------------------------------------------------TTATTTTCCTGTGCTGAC
AGTGCCCGGCCTTAACTAACTTCACGGATCGATCACCGTATCATGGTCACCGAGATAGCAGAAGCGTGGAAATACAGGAT
CTATCTATAACGAGCACGACGTGGGTGGAAGGCAAGGGTTGGTGGGGATTTGTTGCACCGGAAGTGAAAAGCCTCCAAAG
GAACTGCGGTTGCTGCCATGCAAGGAGCGAGAGATCCGAAGACAACAAGCACGCCATGCATGCATGCATGCGTGCTCCGT
GAAAATTCGCGAGGCACGCATTTATGAAACAAAAATGCTAGACATATAAAGACTTACACGCTTTTACACGTTCCTTCCAT
CTAACAACCAATCACAAACCTCTCCCCCCCTGATTTTCAGGGGAGTGGGCCGTCCCGCTCACCTATTGACCAATCAAGGT
TAACCATCCTGTAAAAGCCTGTAAATCGTTTGTACGTGTAGCATTGCCGTTTATGAAAACGTCTGCAGTCCTCGATGTGT
GCCGTGATCCAT
>chr2A_1
CCGAAGTTTGCTGTATCTTTTGTAAAGCGATGCGTGCATCACAACCTGTGATGGCCTTGCCGCGCCTACTTAAGTTTCTG
TAGT---ATGAATCTGTGATGTGGCGAGGACACCGTGAATGGATCGTCCCTTTCTTCGGTTTTCGATTTCGTCTTGTTCA
CTTGTCACTGTATCTATCTACATGG----CCAAGCGAGAGTTACATTACACCTTTTGGTGAAGCAAAATGCTTG---CAT
CTGACACCGACTGCATGA---AAA-----------------CACTGATAACCATTTCACTTTCCCCACT-----------
-------------------------------------------------GTAGATGATAATGTG--------------AG
TACCTATCGTCCCTTAATCCTTGTCCA-TTT--------------GTTACTGTACACATGGTCTTGGCGCGCTGTGAACT
GTGGTAGTCGTTAATTTATAGTTTCTTCTGGACTGTAGTCTGGTGTCCGTCGTCCGTTTTCTTGTCAATTTCTCCTTGTT
CACTTGTCACTCACACACGGACTAGGCGTGCCGTAAGCTTTCCATTTGTCACGACTTATTG----CCCAGTGGAGGTCGA
TGTTTCTTTGATTGAAAGTTACATGCTTGGACTGCATTTACATCCTGCGTTTGCGTTTGAGAGGTACCACACGCAAGTTG
CATCTGGCGTGCGTGATTGTGAGCAGCTCCACTGTTCCGGATAAT---ACGATCTGTGTATCAATCCCTCACCAGTCACC
ACAAGGCAAAATA---ATCTAA---------------------CAGTTTCAAAGGGAAAAATGGTCTTGTGAACAGGTGG
GGG-----CCTGGACACTTGCATAG-AGTAGTAGTTGCATTGAAACTCAAGATCACGCGAGCTCTGACCAATACATAGAG
CAGAGTATTATCTTTTCCCTTT-GGGCTGGCGTCGTTGTCCACGAGAGGTGCCCGGAGTGAATGCTGGCGTCGTGTCACC
C-----------AAGTCAAATCGACGCTCCATGTCTCGGTGCCGCACGCGCGGCCTCGGCCTAGCTACCTACTTGATCTC
CATATATCGGCATATCGCGAGCCTAGCTAGCTCTCGCCATTGCCGCACGCACGCGCAGAGCGACGAGGCGACACGTACAG
TGCGTGCGTGAACAACCAAGGAGAGGAGAGCAGACGAGATCGACCAGGCCATGGCGAGCGTGGGCGCGCTGCTGATGGCC
GCCGTGCTCCCGCCCGTGGCCGCGCTGCTCGTGGCGATGGCCGTCCGGGCCGCGTCGCGCGGGCTGGGCGCGCTGGCGCG
CGCGCACTACGCGTGGCCGGCGAGTTCGCCGTCCGTGCACGCGCGGAAGTGCGGCAGGAGGGCGGCGCCGGAGCAGCCGG
ACCACGAGCTGCGCGTGTCGCGGCACCGCGGGGGCGCGGCGGTGGAGTGCGCGGTCTGCCTGAGCGGCGTGGAGGAGGGC
GACGAGGTGCGGGAGCTGCGGTGCCGGCACGTGTTCCACCGCGCCTGCCTCGACCGGTGGCTCGCGACGCCGCCGGCCAC
GTGCCCGCTCTGCCGCTCCCGCCTGCTGACGGCGCCGCCGGTAGAGGAGGAGGAGGAGGTGGAG---GACCTGGACTCGG
ACCTGCTGCTGCTCATGGCGTACGTGCACG------GCGGCGGCCGCAGATGGTTCTGGTCGCCGTGATCACCCGCCCGT
GAGGCCATGACCCATGCCATGCT-CGAGGG--------CCTGTACGCCGTACGGACGCGTGTGCGTACGTGCGTCGTGCA
CCGGCACGCACGCACGCACGCACGTACGGTGGCCTGGGCGCACGTTCCCGGCAG-TTTTGTATATTGTTTTCTCAGAGCT
AGATCGTAGATCGTCAGTTCATTTCTCTTCTCCTTTCTTTCTTTTTTGGC-------TGTGGTTCGTGTACGCACGAGAG
AGCGGTGGGTGGTATGGAGCTTAGCTGGTTCTCTCGCAGTTTGTTAATG--------GCGCA----CGCACGCATGCATG
GCAGGTTGGCAGAGCGTGGCGCCTGGCGATCGCCACGTCGTCCGGGCGCGCGCACGTTGTTCTCGCTTGCCTCGACGTGT
GTCTGGGCGACG-----TCGCCGCTCGCTCACGGGAGAGCTAGAGAGA----------TCTCTCTGTCTCCTGCGCGCGC
ATGTCGCAGGTCGCATCTTATCCTCTGGGAGTCTGGGTCTGGGGCT----------------------------------
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--------------------------------------------------------------TTATTTTCTTGTGCTGAC
AGTGCCCG------------------------------------------------------------------------
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>chr2D_1
CCGAAGTTTGCTGTATCTTTTGTAAAGCGACGCCTGCATCACAACCTGTGATGGCCTTGCCGCGCCTACTTAAGTTTCTG
TACTATGATGAATCTGTGATGTGGCGATGACACTGTGAATGGGTCGTCCCTTTCTTTGGTTTTCGATTTGTTCTTGTTCA
CTTGTCGCTGTGTCCATGGCTAGTTTTTTCCAGCTGAACGTTACGTTGCACCTTTGGTGAATCAATGCATAATAGTACAT
CTGTCACCGACTGAATCA---ATGTTATTTTAGATCTTTTCCTTTGGTAGCAGTTTTAGTTTCTACAATATGTACTCCCT
CTATCCCATGTCAGCTTGAAAAACGTTCTTATATTATGAGACGGCTGGAGTAGATGATAATGTG--------------TG
TACCTATCATCCCTTATTCTTGGTCAATTTTTTCTTGTTCGCCTGGTTACTGTACACATGGACTTGT-------------
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--------------------------CTGGCTGTAAACTTTTCGTTTGTCACGATTTATTG----CCCAGTGGAGGTTGA
TGTTTCTTTGATTGAAAGTTACATGCTTGGACTGCATTTACATCTTGCATTTGCAATTGAGAGGTACCACACGCAACTTG
CATCTGGCATGCGTGATTGTGAGCAGCTTCACTGTTCTGGATAATAGTACGATCTGTGTATC-ATCCATCACCACAAGGA
A------------AAGATCTAAAAAATAAGACAGGTGGTTCTGCAGTTTTAAAAGGAAAAATGGTCTTGTGAACTAGTAG
GGGCCGGGCCGGGACACTTGCGTAGTAGGAGTAGTTGCATTGAACCGCAAGATCACGCGAGCTCTGACCAATACATAGAG
TAGAGTATTATCTTTTCTCTTTCGGGCTGGCGTCCTTGTCCATGAGAGGTGCCCGGAGTGAATGCTGCCGTCGTGTCACA
CCGATCGCCCCGAAGTCAAATCGACGCGCCATGTCACGGTGCCGCACGCGCAC------------------------CTG
CATATATCGCGAGGCTTG-------GCTAGCTCTCGCCGTTGCCGCACGCACGCGCAGAGCGACGAGGCGACACGTACGG
TGCGCGCGTGAACAGCCGAGAAGGGA-----AGAGAAGAGCGGCGAGGCCATGGCGGGCGTGTGCGCGCTGCTGCTCGTC
GCCGTGCTCCCTCCCGTGGTGGTGCTGCTTGTCTCCGTGGCCGGCCGGGCGGCGGCGCGCGGGGTGGGCGCGCTGGCGCG
CGCGCACTACGCGTGGCCGGCGGGGTCGCCGTCCGTGCACGCGCGGAAGTGCGGCAGGAGGGCCGCGCCGGAGCAGCCGG
AGCACGAGCTGCGCGTGTCGCGGCACCGCGGGGGCGCGGCGGTGGAGTGCGCGGTCTGCCTGAGCGGCGTGGCGGAGGGC
GACGAGGTGCGGGAGCTGCGGTGCCGGCACGTGTTCCACCGCGCCTGCCTCGACCGGTGGCTCGCGACGCCGCCGGCCAC
GTGCCCGCTCTGCCGCTCCCGCCTGCTGACGGCGCCGCCGGTAGAGGCCGAGGAGGAGGAGGAGCTGGACCTGGACTCGG
ACCTGCTGCTGCTCATGGCGTACGTGCA---------CGGCGGCGGCGGATGGTTCTGGTCGCCGTGATCACGCGCCCG-
-------TGACCCATGCCAGTGCCCGAGGA--------ACTGTACGGCGTAGGGACGCGTGTGCGTGCGTG----GTACA
CCG------------GCATGCACGTACGGTGGCCTGGGCGCACGTTCCCGACGG-TTTTGTATATTGTTTTTAC-GAGCT
AGATCGT-------CCGTTCATTCCTCCTTTTCTTTATTTCCTTTTTGGT-------TGTGGTTCGTGTACGCACGAGAG
AGCGGTGGATGGTATGGAGCTTAGCTGGTTTTCTCGCAGTTTGTTAATGGCGCGTGCGCGCA----CGCGCGCATGCATG
GCAGGTTGGCAGGGCGTGGCGCTCGGCGGTCGCCACGTCGTCCGGGCGCGCACACGTTGTTCTCGCTTGCCTCGACGTGT
GTCTGGGCGACGCGACGTCCCCGCTCGCTCAC------------GAGA----------TCTCTCCGTGTCCTGCGCGCGC
AGGTCGCAGGTCGCATCTCATCCTCTGGGAGTCTGGGTCTGGGGCTTTATTTTCTGGCGACTGATGGGCACCGGCGCAAC
GGTTCGGTCGGTCGTATCTGGGGTGTTAGTTTGTCTTTTTGTCCATCATCAGATTAGCCTTCTTTTTTTTTTCTCAACAA
AAATTGCATCCAGCTGTTCGTCCTGGACACCCGCCTTGGACGCACCGAGGCCTGCCTTGAAGCATCAGCAGCTCGCCATC
GGTCGCTGTCCTCGCCGCACCACCATGCCGTCAGCTACAGCTTTTTTCTCACGCCCACTGAACCTTTTCTATGGCTGAAG
CTTTTTCACAAAACGGTTGAAGCTTTTTCCATCGACGGTTCCAGCTTTCGCGGTTGCGTGGTGGCCGGTCCCCAAATTCC
GTCGCCTTCGATTGAAGTTCTGTAGGACGCTGGTTGTAGCATTTCTTTTGGTATTGTTTGCAGCTCCCTCCACGCCATTT
ACAGCCTTCTTTCTCTCTCTTTGAGTGGTTCCAGCAAAAAAGATTGATCCAGCAAAAATATCATAAATGAGGATGTAGCA
AAAAAGAAGACGGTTGTAGCAAAATTCAAACACCGTTGTAACAAAACTTGGAGAGGTTCCAGCAAAATAAGATGGATCCA
GCAAAAATTCAAAAACAAGGTGGGAGCAAAAACTAAGACGGCGGTAGCAAAAATCAAAGACCGTGGTAACAATTTTTTGA
GTAGTTCCAGCAAAAAGATGGATCTGATTAAGCAAAAAAATCAAAAGACGGACTGCCAACTGTGGTAGCAAAAAGCAAAA
CGATGGTAGCAAATTTTTGGACTGGTTGCAGCAAAAAAATCACTCAAAAATGTGGATCCTGGTTACAGCAAATTCCGGGG
CTGTGGTAGCTTTCTCGGTGCTGGTTGCAGCAAATTGCAGCACCAACCTCCAACCTCGCCAGTTGCAGAACACCGAGGGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAGAGCAGAGCCCCGTCTCAACCCGATCTAGATGGAA
AAAAGGAAGGTGGGGAACAGATGTGATTTCTCCAGCGACTTGATTTGGGCGCTTCTGCTGGAGGTAGGGGATGGGGAGCG
GTGCTGGAGGTAGGGGATAAGAAAGGACTGGGATGAGTGGACGAGCAGACGGATAAGACCATCGAGAGGGATCGAGAGGG
ATGGGAAGCGGTGGTGGACCAGGAGGCTGCGGTACCGACGTGGCCATGTAGACTGTCACACGTCGTTTGATCCAGAAGGA
TCGTGCGACTCGTACTCGACCGGCCGAGCGTTCGGCCGGTCCGCCGTACGTGAACATTTCCCTTATTTTCTTGTGCTGAC
AGTGCCCGGCCTTAACTAACTTCACGGATCGATCACCGTATCATGGTCATGCAGATAGCAAAAGCGTGGAAATACAGGAT
CTATCTATAA----------------------------------------------------------------------
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>SNPs
---------------------------S----------------------------------S-------S---------
---SS---------------------------------------------------------------------------
----------------------------------------------------------------S---------------
-------------S----SSS-----------------------------------------------------------
----------------------------------------------------------------SSSSSSSSSSSSSS--
----------------------------------------------------------------S---S-----------
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-------------------------------------------------------------SSSS---------------
----------S---------------------------------------------S------------S----------
------------------------------------------------------------S-------------------
-SSSSSSSSSSS-----------------------------------------------SS-S--S--------------
---------------------------------------------------------------------S----------
---------------------------------------------------------S-------S--------------
------------------------S-------------------------------------------------------
-------------S--S---------------------------------------------------------------
--------------------------------------------------------------------S-----------
--S-----S-----S--------------SS-------------S-----------------------------------
-----------------------S---------------S--------------------------------------S-
------------------------------------------------------------------------S-------
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------------S-----------------------------------------------------------------S-
------------------------------SSSSSS----------------------------------S---S-----
----------------------------S-SSSSSSSS------------------------------------------
--------------S-----S---------------S-----------------S-------------------S-----
--------------------------------------------S--SS-SSSSSSS-------S---------------
---------S---------------------------------------------------SSSSS--------------
--------------------------------------------------S-----------------------------
----S---------S---------------------------------SSSSSSSSSS------------S---------
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----------------------------------------------------------------------S---------
-------------------------------------------------SSS--------S-------------------
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS
>forward_469
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------------------------------------------------ACTGTACACATGGACTAGGCC-----------
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>reverse_2209
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------------------------------------------------GCGCTGGAGATCTCTCTGTC------------
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