Multiple sequence alignment - TraesCS2B01G107000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G107000 chr2B 100.000 2675 0 0 1 2675 68195567 68198241 0.000000e+00 4940.0
1 TraesCS2B01G107000 chr2A 87.879 2145 149 40 436 2513 45072600 45074700 0.000000e+00 2418.0
2 TraesCS2B01G107000 chr2A 84.093 1119 115 24 545 1641 45080060 45081137 0.000000e+00 1022.0
3 TraesCS2B01G107000 chr2A 83.399 253 29 6 2261 2513 45081676 45081915 3.470000e-54 222.0
4 TraesCS2B01G107000 chr2A 84.146 82 11 2 2508 2588 45081996 45082076 7.940000e-11 78.7
5 TraesCS2B01G107000 chr2D 88.436 1375 87 17 581 1930 43288113 43289440 0.000000e+00 1592.0
6 TraesCS2B01G107000 chr2D 83.278 598 60 19 1922 2506 43291235 43291805 5.110000e-142 514.0
7 TraesCS2B01G107000 chr3D 74.543 1257 237 52 670 1879 520097641 520096421 3.120000e-129 472.0
8 TraesCS2B01G107000 chr3D 73.648 1165 230 54 547 1676 569119555 569118433 1.940000e-101 379.0
9 TraesCS2B01G107000 chr3D 75.650 731 143 26 977 1687 567664356 567663641 5.520000e-87 331.0
10 TraesCS2B01G107000 chr3D 86.099 223 24 7 537 757 565830732 565830949 1.600000e-57 233.0
11 TraesCS2B01G107000 chr3D 78.804 368 60 7 1736 2089 569396017 569395654 5.760000e-57 231.0
12 TraesCS2B01G107000 chr3D 82.008 239 39 2 1741 1977 568112756 568112992 1.620000e-47 200.0
13 TraesCS2B01G107000 chr3D 79.779 272 49 3 1740 2007 567904782 567905051 2.720000e-45 193.0
14 TraesCS2B01G107000 chr3D 81.897 232 37 3 1744 1973 567689137 567688909 9.770000e-45 191.0
15 TraesCS2B01G107000 chr3D 94.318 88 5 0 13 100 705995 705908 4.650000e-28 135.0
16 TraesCS2B01G107000 chr3D 78.541 233 30 13 2064 2285 569126759 569126536 4.650000e-28 135.0
17 TraesCS2B01G107000 chr3A 74.423 1169 221 50 531 1667 655920276 655921398 5.290000e-117 431.0
18 TraesCS2B01G107000 chr3A 88.158 228 24 3 526 753 699533358 699533582 4.390000e-68 268.0
19 TraesCS2B01G107000 chr3A 78.177 362 63 9 1736 2089 702387786 702387433 1.610000e-52 217.0
20 TraesCS2B01G107000 chr3A 78.177 362 63 9 1736 2089 702405413 702405060 1.610000e-52 217.0
21 TraesCS2B01G107000 chr3A 96.000 100 4 0 1 100 603879222 603879123 2.130000e-36 163.0
22 TraesCS2B01G107000 chr3B 84.727 275 35 6 496 767 752973307 752973037 4.390000e-68 268.0
23 TraesCS2B01G107000 chr3B 85.388 219 30 2 545 762 773747042 773747259 2.680000e-55 226.0
24 TraesCS2B01G107000 chrUn 78.177 362 63 9 1736 2089 333756203 333755850 1.610000e-52 217.0
25 TraesCS2B01G107000 chr7B 98.020 101 2 0 1 101 694308945 694308845 2.740000e-40 176.0
26 TraesCS2B01G107000 chr5B 96.907 97 3 0 1 97 148196777 148196681 2.130000e-36 163.0
27 TraesCS2B01G107000 chr5B 93.333 105 6 1 1 105 17985239 17985136 1.280000e-33 154.0
28 TraesCS2B01G107000 chr5B 88.119 101 6 6 4 101 677886885 677886788 6.050000e-22 115.0
29 TraesCS2B01G107000 chr5A 92.553 94 7 0 6 99 544239372 544239465 4.650000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G107000 chr2B 68195567 68198241 2674 False 4940.0 4940 100.000000 1 2675 1 chr2B.!!$F1 2674
1 TraesCS2B01G107000 chr2A 45072600 45074700 2100 False 2418.0 2418 87.879000 436 2513 1 chr2A.!!$F1 2077
2 TraesCS2B01G107000 chr2A 45080060 45082076 2016 False 440.9 1022 83.879333 545 2588 3 chr2A.!!$F2 2043
3 TraesCS2B01G107000 chr2D 43288113 43291805 3692 False 1053.0 1592 85.857000 581 2506 2 chr2D.!!$F1 1925
4 TraesCS2B01G107000 chr3D 520096421 520097641 1220 True 472.0 472 74.543000 670 1879 1 chr3D.!!$R2 1209
5 TraesCS2B01G107000 chr3D 569118433 569119555 1122 True 379.0 379 73.648000 547 1676 1 chr3D.!!$R5 1129
6 TraesCS2B01G107000 chr3D 567663641 567664356 715 True 331.0 331 75.650000 977 1687 1 chr3D.!!$R3 710
7 TraesCS2B01G107000 chr3A 655920276 655921398 1122 False 431.0 431 74.423000 531 1667 1 chr3A.!!$F1 1136

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
528 529 0.034896 CTACCACAACCGCAAGTCCT 59.965 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1869 1999 0.321564 TTCGCACCAACATGCTAGCT 60.322 50.0 17.23 0.0 43.8 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.814394 TGCTGATGTGAATGTTCCAGC 59.186 47.619 12.05 12.05 45.01 4.85
22 23 2.089980 GCTGATGTGAATGTTCCAGCT 58.910 47.619 0.00 0.00 42.46 4.24
23 24 2.097142 GCTGATGTGAATGTTCCAGCTC 59.903 50.000 0.00 0.00 42.46 4.09
24 25 2.681848 CTGATGTGAATGTTCCAGCTCC 59.318 50.000 0.00 0.00 0.00 4.70
25 26 2.306805 TGATGTGAATGTTCCAGCTCCT 59.693 45.455 0.00 0.00 0.00 3.69
26 27 2.189594 TGTGAATGTTCCAGCTCCTG 57.810 50.000 0.00 0.00 0.00 3.86
27 28 1.421268 TGTGAATGTTCCAGCTCCTGT 59.579 47.619 0.00 0.00 0.00 4.00
28 29 2.637382 TGTGAATGTTCCAGCTCCTGTA 59.363 45.455 0.00 0.00 0.00 2.74
29 30 3.265791 GTGAATGTTCCAGCTCCTGTAG 58.734 50.000 0.00 0.00 0.00 2.74
52 53 3.719699 CGCTGTAAGGGCCAATTTG 57.280 52.632 6.18 0.00 41.12 2.32
53 54 0.173255 CGCTGTAAGGGCCAATTTGG 59.827 55.000 11.27 11.27 41.12 3.28
54 55 0.536724 GCTGTAAGGGCCAATTTGGG 59.463 55.000 17.03 0.00 38.19 4.12
63 64 2.450992 CCAATTTGGGCCCAACTGT 58.549 52.632 37.33 22.31 35.46 3.55
64 65 0.764271 CCAATTTGGGCCCAACTGTT 59.236 50.000 37.33 26.43 35.46 3.16
65 66 1.542987 CCAATTTGGGCCCAACTGTTG 60.543 52.381 37.33 33.48 35.46 3.33
66 67 0.108396 AATTTGGGCCCAACTGTTGC 59.892 50.000 37.33 4.70 35.46 4.17
67 68 2.098426 ATTTGGGCCCAACTGTTGCG 62.098 55.000 37.33 7.91 35.46 4.85
68 69 4.514585 TGGGCCCAACTGTTGCGT 62.515 61.111 26.33 0.00 0.00 5.24
69 70 2.281900 GGGCCCAACTGTTGCGTA 60.282 61.111 19.95 0.00 0.00 4.42
70 71 1.899534 GGGCCCAACTGTTGCGTAA 60.900 57.895 19.95 0.00 0.00 3.18
71 72 1.248101 GGGCCCAACTGTTGCGTAAT 61.248 55.000 19.95 0.00 0.00 1.89
72 73 1.455248 GGCCCAACTGTTGCGTAATA 58.545 50.000 14.94 0.00 0.00 0.98
73 74 1.813786 GGCCCAACTGTTGCGTAATAA 59.186 47.619 14.94 0.00 0.00 1.40
74 75 2.229302 GGCCCAACTGTTGCGTAATAAA 59.771 45.455 14.94 0.00 0.00 1.40
75 76 3.498082 GCCCAACTGTTGCGTAATAAAG 58.502 45.455 14.94 0.00 0.00 1.85
76 77 3.498082 CCCAACTGTTGCGTAATAAAGC 58.502 45.455 14.94 0.00 0.00 3.51
77 78 3.190535 CCCAACTGTTGCGTAATAAAGCT 59.809 43.478 14.94 0.00 0.00 3.74
78 79 4.393680 CCCAACTGTTGCGTAATAAAGCTA 59.606 41.667 14.94 0.00 0.00 3.32
79 80 5.065988 CCCAACTGTTGCGTAATAAAGCTAT 59.934 40.000 14.94 0.00 0.00 2.97
80 81 6.259167 CCCAACTGTTGCGTAATAAAGCTATA 59.741 38.462 14.94 0.00 0.00 1.31
81 82 7.041372 CCCAACTGTTGCGTAATAAAGCTATAT 60.041 37.037 14.94 0.00 0.00 0.86
82 83 7.798516 CCAACTGTTGCGTAATAAAGCTATATG 59.201 37.037 14.94 0.00 0.00 1.78
83 84 6.888430 ACTGTTGCGTAATAAAGCTATATGC 58.112 36.000 0.00 0.00 43.29 3.14
130 131 7.856145 AGCATTGTAAAAGAGAGACTAATGG 57.144 36.000 0.00 0.00 0.00 3.16
131 132 7.398024 AGCATTGTAAAAGAGAGACTAATGGT 58.602 34.615 0.00 0.00 32.26 3.55
132 133 7.335422 AGCATTGTAAAAGAGAGACTAATGGTG 59.665 37.037 0.00 0.00 34.80 4.17
133 134 7.119846 GCATTGTAAAAGAGAGACTAATGGTGT 59.880 37.037 0.00 0.00 0.00 4.16
134 135 8.660373 CATTGTAAAAGAGAGACTAATGGTGTC 58.340 37.037 0.00 0.00 38.35 3.67
143 144 5.821516 AGACTAATGGTGTCTCTCGTTAG 57.178 43.478 0.00 0.00 40.35 2.34
144 145 4.096682 AGACTAATGGTGTCTCTCGTTAGC 59.903 45.833 0.00 0.00 40.35 3.09
145 146 4.017808 ACTAATGGTGTCTCTCGTTAGCT 58.982 43.478 0.00 0.00 36.47 3.32
146 147 5.191426 ACTAATGGTGTCTCTCGTTAGCTA 58.809 41.667 0.00 0.00 36.47 3.32
147 148 4.640789 AATGGTGTCTCTCGTTAGCTAG 57.359 45.455 0.00 0.00 0.00 3.42
148 149 1.743958 TGGTGTCTCTCGTTAGCTAGC 59.256 52.381 6.62 6.62 0.00 3.42
149 150 2.018515 GGTGTCTCTCGTTAGCTAGCT 58.981 52.381 23.12 23.12 0.00 3.32
150 151 3.204526 GGTGTCTCTCGTTAGCTAGCTA 58.795 50.000 20.67 20.67 0.00 3.32
151 152 3.626670 GGTGTCTCTCGTTAGCTAGCTAA 59.373 47.826 29.22 29.22 36.31 3.09
152 153 4.096081 GGTGTCTCTCGTTAGCTAGCTAAA 59.904 45.833 33.21 20.54 39.82 1.85
153 154 5.221087 GGTGTCTCTCGTTAGCTAGCTAAAT 60.221 44.000 33.21 9.07 39.82 1.40
154 155 6.267070 GTGTCTCTCGTTAGCTAGCTAAATT 58.733 40.000 33.21 8.68 39.82 1.82
155 156 6.752815 GTGTCTCTCGTTAGCTAGCTAAATTT 59.247 38.462 33.21 7.93 39.82 1.82
156 157 7.914346 GTGTCTCTCGTTAGCTAGCTAAATTTA 59.086 37.037 33.21 19.94 39.82 1.40
157 158 8.129840 TGTCTCTCGTTAGCTAGCTAAATTTAG 58.870 37.037 33.21 26.11 39.82 1.85
158 159 8.130469 GTCTCTCGTTAGCTAGCTAAATTTAGT 58.870 37.037 33.21 13.82 39.82 2.24
159 160 8.684520 TCTCTCGTTAGCTAGCTAAATTTAGTT 58.315 33.333 33.21 20.13 39.82 2.24
160 161 9.947669 CTCTCGTTAGCTAGCTAAATTTAGTTA 57.052 33.333 33.21 20.16 39.82 2.24
206 207 2.859992 GGTTGATGACCCTGCAGAC 58.140 57.895 17.39 6.93 43.06 3.51
207 208 0.326264 GGTTGATGACCCTGCAGACT 59.674 55.000 17.39 0.00 43.06 3.24
208 209 1.446907 GTTGATGACCCTGCAGACTG 58.553 55.000 17.39 5.77 0.00 3.51
209 210 0.325933 TTGATGACCCTGCAGACTGG 59.674 55.000 17.39 10.87 34.74 4.00
210 211 0.545071 TGATGACCCTGCAGACTGGA 60.545 55.000 17.39 0.00 37.06 3.86
211 212 0.835941 GATGACCCTGCAGACTGGAT 59.164 55.000 17.39 0.00 37.06 3.41
212 213 0.545171 ATGACCCTGCAGACTGGATG 59.455 55.000 17.39 0.00 37.06 3.51
213 214 1.222936 GACCCTGCAGACTGGATGG 59.777 63.158 17.39 15.27 37.06 3.51
214 215 1.539869 ACCCTGCAGACTGGATGGT 60.540 57.895 17.39 16.51 37.06 3.55
215 216 1.136329 ACCCTGCAGACTGGATGGTT 61.136 55.000 17.39 3.50 33.33 3.67
216 217 0.393537 CCCTGCAGACTGGATGGTTC 60.394 60.000 17.39 0.00 37.06 3.62
217 218 0.393537 CCTGCAGACTGGATGGTTCC 60.394 60.000 17.39 0.00 42.94 3.62
218 219 0.742281 CTGCAGACTGGATGGTTCCG 60.742 60.000 8.42 0.00 45.89 4.30
223 224 3.727387 CTGGATGGTTCCGGTCCT 58.273 61.111 16.54 5.45 45.89 3.85
224 225 1.221840 CTGGATGGTTCCGGTCCTG 59.778 63.158 16.54 9.54 45.89 3.86
225 226 2.257409 CTGGATGGTTCCGGTCCTGG 62.257 65.000 16.54 0.00 45.89 4.45
226 227 2.124695 GATGGTTCCGGTCCTGGC 60.125 66.667 16.54 5.47 0.00 4.85
227 228 4.096003 ATGGTTCCGGTCCTGGCG 62.096 66.667 16.54 0.00 0.00 5.69
229 230 4.011517 GGTTCCGGTCCTGGCGAA 62.012 66.667 0.00 0.00 0.00 4.70
230 231 2.741211 GTTCCGGTCCTGGCGAAC 60.741 66.667 0.00 0.00 0.00 3.95
236 237 3.446507 GGTCCTGGCGAACGATTAA 57.553 52.632 0.00 0.00 0.00 1.40
237 238 1.949465 GGTCCTGGCGAACGATTAAT 58.051 50.000 0.00 0.00 0.00 1.40
238 239 1.865340 GGTCCTGGCGAACGATTAATC 59.135 52.381 5.30 5.30 0.00 1.75
277 278 7.938140 TTATAAAGCTATAACCATGATGGCC 57.062 36.000 12.25 0.00 42.67 5.36
278 279 4.459852 AAAGCTATAACCATGATGGCCT 57.540 40.909 12.25 1.24 42.67 5.19
279 280 4.459852 AAGCTATAACCATGATGGCCTT 57.540 40.909 12.25 1.67 42.67 4.35
280 281 4.459852 AGCTATAACCATGATGGCCTTT 57.540 40.909 12.25 0.87 42.67 3.11
281 282 4.401925 AGCTATAACCATGATGGCCTTTC 58.598 43.478 12.25 1.19 42.67 2.62
282 283 4.105377 AGCTATAACCATGATGGCCTTTCT 59.895 41.667 12.25 0.00 42.67 2.52
283 284 4.829492 GCTATAACCATGATGGCCTTTCTT 59.171 41.667 12.25 0.00 42.67 2.52
284 285 5.048434 GCTATAACCATGATGGCCTTTCTTC 60.048 44.000 12.25 0.00 42.67 2.87
285 286 3.463048 AACCATGATGGCCTTTCTTCT 57.537 42.857 12.25 0.00 42.67 2.85
286 287 3.010200 ACCATGATGGCCTTTCTTCTC 57.990 47.619 12.25 0.00 42.67 2.87
287 288 2.579860 ACCATGATGGCCTTTCTTCTCT 59.420 45.455 12.25 0.00 42.67 3.10
288 289 3.782523 ACCATGATGGCCTTTCTTCTCTA 59.217 43.478 12.25 0.00 42.67 2.43
289 290 4.228210 ACCATGATGGCCTTTCTTCTCTAA 59.772 41.667 12.25 0.00 42.67 2.10
290 291 5.195940 CCATGATGGCCTTTCTTCTCTAAA 58.804 41.667 3.32 0.00 0.00 1.85
291 292 5.653769 CCATGATGGCCTTTCTTCTCTAAAA 59.346 40.000 3.32 0.00 0.00 1.52
292 293 6.153340 CCATGATGGCCTTTCTTCTCTAAAAA 59.847 38.462 3.32 0.00 0.00 1.94
329 330 7.713764 TTTTACCGGTGTAGTTTTCTAGAAC 57.286 36.000 19.93 0.00 32.55 3.01
330 331 4.942761 ACCGGTGTAGTTTTCTAGAACA 57.057 40.909 6.12 0.00 33.61 3.18
331 332 5.479124 ACCGGTGTAGTTTTCTAGAACAT 57.521 39.130 6.12 0.00 33.61 2.71
332 333 5.861727 ACCGGTGTAGTTTTCTAGAACATT 58.138 37.500 6.12 0.00 33.61 2.71
333 334 6.293698 ACCGGTGTAGTTTTCTAGAACATTT 58.706 36.000 6.12 0.00 33.61 2.32
334 335 6.426025 ACCGGTGTAGTTTTCTAGAACATTTC 59.574 38.462 6.12 0.00 33.61 2.17
335 336 6.128363 CCGGTGTAGTTTTCTAGAACATTTCC 60.128 42.308 4.18 2.07 33.61 3.13
336 337 6.649557 CGGTGTAGTTTTCTAGAACATTTCCT 59.350 38.462 4.18 0.00 33.61 3.36
337 338 7.172703 CGGTGTAGTTTTCTAGAACATTTCCTT 59.827 37.037 4.18 0.00 33.61 3.36
338 339 8.847196 GGTGTAGTTTTCTAGAACATTTCCTTT 58.153 33.333 4.18 0.00 34.10 3.11
378 379 0.881118 TTTTTGGAGTGGATGCGAGC 59.119 50.000 0.00 0.00 0.00 5.03
379 380 1.298157 TTTTGGAGTGGATGCGAGCG 61.298 55.000 0.00 0.00 0.00 5.03
380 381 2.166130 TTTGGAGTGGATGCGAGCGA 62.166 55.000 0.00 0.00 0.00 4.93
381 382 2.279120 GGAGTGGATGCGAGCGAG 60.279 66.667 0.00 0.00 0.00 5.03
382 383 2.775856 GGAGTGGATGCGAGCGAGA 61.776 63.158 0.00 0.00 0.00 4.04
383 384 1.587613 GAGTGGATGCGAGCGAGAC 60.588 63.158 0.00 0.00 0.00 3.36
384 385 1.999071 GAGTGGATGCGAGCGAGACT 61.999 60.000 0.00 0.00 0.00 3.24
385 386 1.153745 GTGGATGCGAGCGAGACTT 60.154 57.895 0.00 0.00 0.00 3.01
386 387 1.153765 TGGATGCGAGCGAGACTTG 60.154 57.895 0.00 0.00 0.00 3.16
391 392 4.700037 CGAGCGAGACTTGCTAGG 57.300 61.111 17.47 8.81 44.18 3.02
392 393 1.803943 CGAGCGAGACTTGCTAGGT 59.196 57.895 17.47 0.00 44.18 3.08
393 394 0.248296 CGAGCGAGACTTGCTAGGTC 60.248 60.000 17.47 4.51 44.18 3.85
394 395 0.811915 GAGCGAGACTTGCTAGGTCA 59.188 55.000 17.47 0.00 44.18 4.02
395 396 1.202582 GAGCGAGACTTGCTAGGTCAA 59.797 52.381 17.47 0.00 44.18 3.18
396 397 1.203523 AGCGAGACTTGCTAGGTCAAG 59.796 52.381 15.97 8.16 46.57 3.02
397 398 1.634702 CGAGACTTGCTAGGTCAAGC 58.365 55.000 9.31 4.17 45.43 4.01
398 399 1.737363 CGAGACTTGCTAGGTCAAGCC 60.737 57.143 9.31 0.34 45.43 4.35
399 400 0.615850 AGACTTGCTAGGTCAAGCCC 59.384 55.000 9.31 3.61 45.43 5.19
400 401 0.324943 GACTTGCTAGGTCAAGCCCA 59.675 55.000 9.31 0.00 45.43 5.36
401 402 0.995024 ACTTGCTAGGTCAAGCCCAT 59.005 50.000 9.31 0.00 45.43 4.00
402 403 1.340405 ACTTGCTAGGTCAAGCCCATG 60.340 52.381 9.31 0.00 45.43 3.66
403 404 0.680921 TTGCTAGGTCAAGCCCATGC 60.681 55.000 0.00 0.00 42.05 4.06
404 405 1.825622 GCTAGGTCAAGCCCATGCC 60.826 63.158 0.00 0.00 38.69 4.40
405 406 1.152881 CTAGGTCAAGCCCATGCCC 60.153 63.158 0.00 0.00 38.69 5.36
406 407 1.619363 TAGGTCAAGCCCATGCCCT 60.619 57.895 0.00 0.00 38.69 5.19
407 408 1.214305 TAGGTCAAGCCCATGCCCTT 61.214 55.000 0.00 0.00 38.69 3.95
408 409 1.214305 AGGTCAAGCCCATGCCCTTA 61.214 55.000 0.00 0.00 38.69 2.69
409 410 1.037579 GGTCAAGCCCATGCCCTTAC 61.038 60.000 0.00 0.00 38.69 2.34
410 411 0.323360 GTCAAGCCCATGCCCTTACA 60.323 55.000 0.00 0.00 38.69 2.41
411 412 0.407528 TCAAGCCCATGCCCTTACAA 59.592 50.000 0.00 0.00 38.69 2.41
412 413 1.203112 TCAAGCCCATGCCCTTACAAA 60.203 47.619 0.00 0.00 38.69 2.83
413 414 1.205417 CAAGCCCATGCCCTTACAAAG 59.795 52.381 0.00 0.00 38.69 2.77
414 415 0.704076 AGCCCATGCCCTTACAAAGA 59.296 50.000 0.00 0.00 38.69 2.52
415 416 1.077005 AGCCCATGCCCTTACAAAGAA 59.923 47.619 0.00 0.00 38.69 2.52
416 417 1.478105 GCCCATGCCCTTACAAAGAAG 59.522 52.381 0.00 0.00 0.00 2.85
417 418 2.883888 GCCCATGCCCTTACAAAGAAGA 60.884 50.000 0.00 0.00 0.00 2.87
418 419 3.019564 CCCATGCCCTTACAAAGAAGAG 58.980 50.000 0.00 0.00 0.00 2.85
419 420 3.308402 CCCATGCCCTTACAAAGAAGAGA 60.308 47.826 0.00 0.00 0.00 3.10
420 421 4.335416 CCATGCCCTTACAAAGAAGAGAA 58.665 43.478 0.00 0.00 0.00 2.87
421 422 4.952335 CCATGCCCTTACAAAGAAGAGAAT 59.048 41.667 0.00 0.00 0.00 2.40
422 423 5.163581 CCATGCCCTTACAAAGAAGAGAATG 60.164 44.000 0.00 0.00 0.00 2.67
423 424 5.241403 TGCCCTTACAAAGAAGAGAATGA 57.759 39.130 0.00 0.00 0.00 2.57
424 425 5.248640 TGCCCTTACAAAGAAGAGAATGAG 58.751 41.667 0.00 0.00 0.00 2.90
425 426 5.013079 TGCCCTTACAAAGAAGAGAATGAGA 59.987 40.000 0.00 0.00 0.00 3.27
426 427 5.940470 GCCCTTACAAAGAAGAGAATGAGAA 59.060 40.000 0.00 0.00 0.00 2.87
427 428 6.431234 GCCCTTACAAAGAAGAGAATGAGAAA 59.569 38.462 0.00 0.00 0.00 2.52
428 429 7.121907 GCCCTTACAAAGAAGAGAATGAGAAAT 59.878 37.037 0.00 0.00 0.00 2.17
429 430 8.457261 CCCTTACAAAGAAGAGAATGAGAAATG 58.543 37.037 0.00 0.00 0.00 2.32
430 431 8.457261 CCTTACAAAGAAGAGAATGAGAAATGG 58.543 37.037 0.00 0.00 0.00 3.16
431 432 6.830873 ACAAAGAAGAGAATGAGAAATGGG 57.169 37.500 0.00 0.00 0.00 4.00
432 433 5.184671 ACAAAGAAGAGAATGAGAAATGGGC 59.815 40.000 0.00 0.00 0.00 5.36
433 434 4.858965 AGAAGAGAATGAGAAATGGGCT 57.141 40.909 0.00 0.00 0.00 5.19
434 435 5.965033 AGAAGAGAATGAGAAATGGGCTA 57.035 39.130 0.00 0.00 0.00 3.93
472 473 3.173240 GCGTCTCTTCCGCGTGAC 61.173 66.667 4.92 4.49 41.91 3.67
473 474 2.504244 CGTCTCTTCCGCGTGACC 60.504 66.667 4.92 0.00 0.00 4.02
483 484 2.047179 GCGTGACCAAGACCTCCC 60.047 66.667 0.00 0.00 0.00 4.30
484 485 2.584391 GCGTGACCAAGACCTCCCT 61.584 63.158 0.00 0.00 0.00 4.20
487 488 1.229529 TGACCAAGACCTCCCTCCC 60.230 63.158 0.00 0.00 0.00 4.30
488 489 1.081277 GACCAAGACCTCCCTCCCT 59.919 63.158 0.00 0.00 0.00 4.20
489 490 0.338814 GACCAAGACCTCCCTCCCTA 59.661 60.000 0.00 0.00 0.00 3.53
490 491 1.027815 ACCAAGACCTCCCTCCCTAT 58.972 55.000 0.00 0.00 0.00 2.57
491 492 1.062044 ACCAAGACCTCCCTCCCTATC 60.062 57.143 0.00 0.00 0.00 2.08
492 493 1.333177 CAAGACCTCCCTCCCTATCG 58.667 60.000 0.00 0.00 0.00 2.92
493 494 0.188834 AAGACCTCCCTCCCTATCGG 59.811 60.000 0.00 0.00 0.00 4.18
494 495 1.000041 AGACCTCCCTCCCTATCGGT 61.000 60.000 0.00 0.00 0.00 4.69
495 496 0.540133 GACCTCCCTCCCTATCGGTC 60.540 65.000 0.00 0.00 34.79 4.79
496 497 1.000041 ACCTCCCTCCCTATCGGTCT 61.000 60.000 0.00 0.00 0.00 3.85
528 529 0.034896 CTACCACAACCGCAAGTCCT 59.965 55.000 0.00 0.00 0.00 3.85
541 542 3.213402 GTCCTCTCGCTCCTCCCG 61.213 72.222 0.00 0.00 0.00 5.14
543 544 4.824515 CCTCTCGCTCCTCCCGGT 62.825 72.222 0.00 0.00 0.00 5.28
577 578 3.834799 GGCAGCAATGGCAGGAGC 61.835 66.667 0.00 0.00 44.61 4.70
578 579 2.754658 GCAGCAATGGCAGGAGCT 60.755 61.111 5.42 5.42 44.61 4.09
579 580 2.772691 GCAGCAATGGCAGGAGCTC 61.773 63.158 4.71 4.71 44.61 4.09
730 734 4.135153 CCTCCTCGCTCACCACGG 62.135 72.222 0.00 0.00 0.00 4.94
786 805 3.908737 GGCAACTCCGTACTCAACT 57.091 52.632 0.00 0.00 0.00 3.16
788 807 2.603953 GGCAACTCCGTACTCAACTAC 58.396 52.381 0.00 0.00 0.00 2.73
949 1036 4.353437 AACCCGGCGACTCGTCAC 62.353 66.667 9.30 0.00 0.00 3.67
954 1041 2.254651 GGCGACTCGTCACTTCGT 59.745 61.111 0.00 0.00 35.17 3.85
958 1045 0.235144 CGACTCGTCACTTCGTCAGT 59.765 55.000 0.00 0.00 35.35 3.41
959 1046 1.458445 CGACTCGTCACTTCGTCAGTA 59.542 52.381 0.00 0.00 32.76 2.74
960 1047 2.721193 CGACTCGTCACTTCGTCAGTAC 60.721 54.545 0.00 0.00 32.76 2.73
989 1076 1.136147 CGCTGCTTCATGGCTTCAC 59.864 57.895 0.00 0.00 0.00 3.18
1043 1130 1.067212 CGAGTACCGGCTATTGCTCTT 59.933 52.381 0.00 0.00 39.59 2.85
1131 1236 3.479203 CCGCCCAGGCACATAGGA 61.479 66.667 9.78 0.00 42.06 2.94
1180 1285 0.905357 CCCCGGATCTGTTCTGTTCT 59.095 55.000 0.73 0.00 0.00 3.01
1203 1308 2.224185 TGGTAGCCTGCATTGGTATACG 60.224 50.000 0.00 0.00 0.00 3.06
1300 1417 1.938577 CTCGCCTGTTTGAGATGGATG 59.061 52.381 0.00 0.00 34.04 3.51
1301 1418 1.019673 CGCCTGTTTGAGATGGATGG 58.980 55.000 0.00 0.00 0.00 3.51
1302 1419 0.743097 GCCTGTTTGAGATGGATGGC 59.257 55.000 0.00 0.00 0.00 4.40
1552 1681 6.154877 TCAAATTGATATCAATGGCAGGTTGT 59.845 34.615 27.46 9.22 45.06 3.32
1572 1701 0.749091 TTGCTGGATTCCATCGCAGG 60.749 55.000 16.46 2.11 36.36 4.85
1595 1724 2.611971 GCCTCATTCGTACACAAGTCCA 60.612 50.000 0.00 0.00 0.00 4.02
1626 1755 6.687604 ACAAACTCTAGTTTTGCACACTTTT 58.312 32.000 15.31 0.00 45.07 2.27
1722 1851 4.789012 AAATTGGCCAACTGTCAGTATG 57.211 40.909 23.27 7.00 37.54 2.39
1723 1852 2.949177 TTGGCCAACTGTCAGTATGT 57.051 45.000 16.05 0.00 37.40 2.29
1778 1908 4.965119 ATGAGCCGGTTAGTTTCATTTC 57.035 40.909 1.90 0.00 0.00 2.17
1784 1914 4.379082 GCCGGTTAGTTTCATTTCGATGTT 60.379 41.667 1.90 0.00 0.00 2.71
1869 1999 7.175990 GTGTGAATATCCTTTTGGGTTGAAGTA 59.824 37.037 0.00 0.00 40.87 2.24
1894 2024 2.584791 GCATGTTGGTGCGAAAACTAG 58.415 47.619 0.00 0.00 35.10 2.57
1911 2041 8.675888 CGAAAACTAGGAATTCGTTTTGTTAAC 58.324 33.333 20.42 0.00 39.96 2.01
2010 3946 7.751768 ATCGAGGTTTTCTTCTTTCTTTGAT 57.248 32.000 0.00 0.00 0.00 2.57
2041 3977 9.743057 TTCACTGGTTAAAATGTTTAGTCAATG 57.257 29.630 0.00 0.00 0.00 2.82
2100 4036 5.271598 TGATGATGAAATTAGGGCAGGTTT 58.728 37.500 0.00 0.00 0.00 3.27
2132 4068 4.623932 TGACTAGCAAGTTGAACCTCAT 57.376 40.909 7.16 0.00 35.56 2.90
2157 4093 3.213206 TCAAAGAGTGTGGAGCATTGT 57.787 42.857 0.00 0.00 0.00 2.71
2216 4155 4.350346 TGAAACGTTCTGTTGCAATTCAG 58.650 39.130 0.59 6.57 43.38 3.02
2264 4249 4.578516 TGGTTAGGTGTTGACATGTTCTTG 59.421 41.667 0.00 0.00 0.00 3.02
2268 4253 5.290493 AGGTGTTGACATGTTCTTGTCTA 57.710 39.130 15.98 8.78 45.07 2.59
2304 4289 4.346418 GGATCATCTGTACTCAGGTTCCAT 59.654 45.833 0.00 0.00 41.59 3.41
2320 4306 3.320610 TCCATTTGTGTTCCCCTTCAA 57.679 42.857 0.00 0.00 0.00 2.69
2332 4319 1.338020 CCCCTTCAAACACTGAACTGC 59.662 52.381 0.00 0.00 39.20 4.40
2334 4321 1.338020 CCTTCAAACACTGAACTGCCC 59.662 52.381 0.00 0.00 39.20 5.36
2343 4330 3.134127 GAACTGCCCGCCACATCC 61.134 66.667 0.00 0.00 0.00 3.51
2372 4359 0.868406 GGTCGAAAGCAGGTTGTCTG 59.132 55.000 0.00 0.00 46.03 3.51
2436 4436 6.034256 GCTGAAAATTCGTTCTGATCATTTGG 59.966 38.462 0.00 0.00 0.00 3.28
2481 4485 0.394899 AGGGTAATTGCTCAGCTGCC 60.395 55.000 9.47 1.02 0.00 4.85
2490 4494 1.748122 CTCAGCTGCCCACATCACC 60.748 63.158 9.47 0.00 0.00 4.02
2495 4499 0.322456 GCTGCCCACATCACCTGTAA 60.322 55.000 0.00 0.00 35.91 2.41
2515 4604 4.682778 AAGGCTACACACTCAGTTTACA 57.317 40.909 0.00 0.00 0.00 2.41
2560 4649 7.260603 TCTCCAGTGTGCGATATGATTATATG 58.739 38.462 0.00 0.00 29.67 1.78
2565 4654 8.929746 CAGTGTGCGATATGATTATATGAAACT 58.070 33.333 0.00 0.00 29.67 2.66
2567 4656 8.712363 GTGTGCGATATGATTATATGAAACTGT 58.288 33.333 0.00 0.00 29.67 3.55
2571 4660 8.527488 GCGATATGATTATATGAAACTGTCGAG 58.473 37.037 0.00 0.00 29.67 4.04
2577 4666 7.921214 TGATTATATGAAACTGTCGAGAAGTCC 59.079 37.037 1.35 0.00 0.00 3.85
2582 4671 4.039245 TGAAACTGTCGAGAAGTCCTCATT 59.961 41.667 1.35 0.00 42.06 2.57
2588 4677 5.710984 TGTCGAGAAGTCCTCATTTTAGAC 58.289 41.667 0.00 0.00 42.06 2.59
2589 4678 4.794246 GTCGAGAAGTCCTCATTTTAGACG 59.206 45.833 0.00 0.00 42.06 4.18
2590 4679 3.548268 CGAGAAGTCCTCATTTTAGACGC 59.452 47.826 0.00 0.00 42.06 5.19
2591 4680 4.675671 CGAGAAGTCCTCATTTTAGACGCT 60.676 45.833 0.00 0.00 42.06 5.07
2592 4681 4.499183 AGAAGTCCTCATTTTAGACGCTG 58.501 43.478 0.00 0.00 35.65 5.18
2593 4682 3.252974 AGTCCTCATTTTAGACGCTGG 57.747 47.619 0.00 0.00 35.65 4.85
2594 4683 2.093447 AGTCCTCATTTTAGACGCTGGG 60.093 50.000 0.00 0.00 35.65 4.45
2595 4684 1.906574 TCCTCATTTTAGACGCTGGGT 59.093 47.619 0.00 0.00 0.00 4.51
2596 4685 2.093658 TCCTCATTTTAGACGCTGGGTC 60.094 50.000 16.20 16.20 46.45 4.46
2606 4695 1.130561 GACGCTGGGTCAAAGTATTGC 59.869 52.381 18.64 0.00 45.36 3.56
2607 4696 1.164411 CGCTGGGTCAAAGTATTGCA 58.836 50.000 0.00 0.00 36.45 4.08
2608 4697 1.745087 CGCTGGGTCAAAGTATTGCAT 59.255 47.619 0.00 0.00 36.45 3.96
2609 4698 2.942376 CGCTGGGTCAAAGTATTGCATA 59.058 45.455 0.00 0.00 36.45 3.14
2610 4699 3.002656 CGCTGGGTCAAAGTATTGCATAG 59.997 47.826 0.00 0.00 36.45 2.23
2611 4700 3.316308 GCTGGGTCAAAGTATTGCATAGG 59.684 47.826 0.00 0.00 36.45 2.57
2612 4701 4.526970 CTGGGTCAAAGTATTGCATAGGT 58.473 43.478 0.00 0.00 36.45 3.08
2613 4702 5.680619 CTGGGTCAAAGTATTGCATAGGTA 58.319 41.667 0.00 0.00 36.45 3.08
2614 4703 6.260700 TGGGTCAAAGTATTGCATAGGTAT 57.739 37.500 0.00 0.00 36.45 2.73
2615 4704 6.296026 TGGGTCAAAGTATTGCATAGGTATC 58.704 40.000 0.00 0.00 36.45 2.24
2616 4705 5.408604 GGGTCAAAGTATTGCATAGGTATCG 59.591 44.000 0.00 0.00 36.45 2.92
2617 4706 5.107065 GGTCAAAGTATTGCATAGGTATCGC 60.107 44.000 0.00 0.00 36.45 4.58
2618 4707 5.696724 GTCAAAGTATTGCATAGGTATCGCT 59.303 40.000 0.00 0.00 36.45 4.93
2619 4708 6.202954 GTCAAAGTATTGCATAGGTATCGCTT 59.797 38.462 0.00 0.00 36.45 4.68
2620 4709 6.765989 TCAAAGTATTGCATAGGTATCGCTTT 59.234 34.615 0.00 0.00 36.45 3.51
2621 4710 7.929245 TCAAAGTATTGCATAGGTATCGCTTTA 59.071 33.333 0.00 0.00 36.45 1.85
2622 4711 7.653767 AAGTATTGCATAGGTATCGCTTTAC 57.346 36.000 0.00 0.00 0.00 2.01
2623 4712 6.994221 AGTATTGCATAGGTATCGCTTTACT 58.006 36.000 0.00 0.00 0.00 2.24
2624 4713 7.091443 AGTATTGCATAGGTATCGCTTTACTC 58.909 38.462 0.00 0.00 0.00 2.59
2625 4714 4.252971 TGCATAGGTATCGCTTTACTCC 57.747 45.455 0.00 0.00 0.00 3.85
2626 4715 3.639561 TGCATAGGTATCGCTTTACTCCA 59.360 43.478 0.00 0.00 0.00 3.86
2627 4716 4.283467 TGCATAGGTATCGCTTTACTCCAT 59.717 41.667 0.00 0.00 0.00 3.41
2628 4717 5.479027 TGCATAGGTATCGCTTTACTCCATA 59.521 40.000 0.00 0.00 0.00 2.74
2629 4718 6.014925 TGCATAGGTATCGCTTTACTCCATAA 60.015 38.462 0.00 0.00 0.00 1.90
2630 4719 7.042335 GCATAGGTATCGCTTTACTCCATAAT 58.958 38.462 0.00 0.00 0.00 1.28
2631 4720 7.549488 GCATAGGTATCGCTTTACTCCATAATT 59.451 37.037 0.00 0.00 0.00 1.40
2632 4721 9.436957 CATAGGTATCGCTTTACTCCATAATTT 57.563 33.333 0.00 0.00 0.00 1.82
2633 4722 7.730364 AGGTATCGCTTTACTCCATAATTTG 57.270 36.000 0.00 0.00 0.00 2.32
2634 4723 7.280356 AGGTATCGCTTTACTCCATAATTTGT 58.720 34.615 0.00 0.00 0.00 2.83
2635 4724 7.773690 AGGTATCGCTTTACTCCATAATTTGTT 59.226 33.333 0.00 0.00 0.00 2.83
2636 4725 7.855904 GGTATCGCTTTACTCCATAATTTGTTG 59.144 37.037 0.00 0.00 0.00 3.33
2637 4726 6.811253 TCGCTTTACTCCATAATTTGTTGT 57.189 33.333 0.00 0.00 0.00 3.32
2638 4727 6.607689 TCGCTTTACTCCATAATTTGTTGTG 58.392 36.000 0.00 0.00 0.00 3.33
2639 4728 5.799936 CGCTTTACTCCATAATTTGTTGTGG 59.200 40.000 0.00 0.00 34.89 4.17
2640 4729 6.569610 CGCTTTACTCCATAATTTGTTGTGGT 60.570 38.462 4.27 0.00 35.11 4.16
2641 4730 7.151976 GCTTTACTCCATAATTTGTTGTGGTT 58.848 34.615 4.27 0.00 35.11 3.67
2642 4731 8.301002 GCTTTACTCCATAATTTGTTGTGGTTA 58.699 33.333 4.27 0.00 35.11 2.85
2643 4732 9.840427 CTTTACTCCATAATTTGTTGTGGTTAG 57.160 33.333 4.27 0.00 35.11 2.34
2644 4733 8.927675 TTACTCCATAATTTGTTGTGGTTAGT 57.072 30.769 4.27 4.43 35.11 2.24
2645 4734 7.448748 ACTCCATAATTTGTTGTGGTTAGTC 57.551 36.000 4.27 0.00 35.11 2.59
2646 4735 7.231467 ACTCCATAATTTGTTGTGGTTAGTCT 58.769 34.615 4.27 0.00 35.11 3.24
2647 4736 8.380099 ACTCCATAATTTGTTGTGGTTAGTCTA 58.620 33.333 4.27 0.00 35.11 2.59
2648 4737 8.556213 TCCATAATTTGTTGTGGTTAGTCTAC 57.444 34.615 4.27 0.00 35.11 2.59
2649 4738 8.158132 TCCATAATTTGTTGTGGTTAGTCTACA 58.842 33.333 4.27 0.00 35.11 2.74
2650 4739 8.450964 CCATAATTTGTTGTGGTTAGTCTACAG 58.549 37.037 0.00 0.00 38.67 2.74
2651 4740 8.999431 CATAATTTGTTGTGGTTAGTCTACAGT 58.001 33.333 0.00 0.00 38.67 3.55
2654 4743 9.569122 AATTTGTTGTGGTTAGTCTACAGTATT 57.431 29.630 0.00 0.00 38.67 1.89
2655 4744 8.967664 TTTGTTGTGGTTAGTCTACAGTATTT 57.032 30.769 0.00 0.00 38.67 1.40
2656 4745 8.967664 TTGTTGTGGTTAGTCTACAGTATTTT 57.032 30.769 0.00 0.00 38.67 1.82
2657 4746 8.373048 TGTTGTGGTTAGTCTACAGTATTTTG 57.627 34.615 0.00 0.00 38.67 2.44
2658 4747 7.988599 TGTTGTGGTTAGTCTACAGTATTTTGT 59.011 33.333 0.00 0.00 38.67 2.83
2659 4748 8.833493 GTTGTGGTTAGTCTACAGTATTTTGTT 58.167 33.333 0.00 0.00 38.67 2.83
2668 4757 8.822805 AGTCTACAGTATTTTGTTAATCCAGGA 58.177 33.333 0.00 0.00 32.56 3.86
2669 4758 9.614792 GTCTACAGTATTTTGTTAATCCAGGAT 57.385 33.333 0.00 0.00 32.56 3.24
2673 4762 9.533831 ACAGTATTTTGTTAATCCAGGATTTCT 57.466 29.630 20.29 0.00 33.95 2.52
2674 4763 9.793252 CAGTATTTTGTTAATCCAGGATTTCTG 57.207 33.333 20.29 10.36 43.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.814394 GCTGGAACATTCACATCAGCA 59.186 47.619 12.78 0.00 44.68 4.41
5 6 2.681848 CAGGAGCTGGAACATTCACATC 59.318 50.000 0.00 0.00 38.20 3.06
6 7 2.040813 ACAGGAGCTGGAACATTCACAT 59.959 45.455 0.00 0.00 38.20 3.21
7 8 1.421268 ACAGGAGCTGGAACATTCACA 59.579 47.619 0.00 0.00 38.20 3.58
8 9 2.191128 ACAGGAGCTGGAACATTCAC 57.809 50.000 0.00 0.00 38.20 3.18
9 10 3.616956 CTACAGGAGCTGGAACATTCA 57.383 47.619 0.00 0.00 38.20 2.57
29 30 2.820037 GGCCCTTACAGCGTCAGC 60.820 66.667 0.00 0.00 45.58 4.26
30 31 0.392998 ATTGGCCCTTACAGCGTCAG 60.393 55.000 0.00 0.00 0.00 3.51
31 32 0.037590 AATTGGCCCTTACAGCGTCA 59.962 50.000 0.00 0.00 0.00 4.35
32 33 1.135402 CAAATTGGCCCTTACAGCGTC 60.135 52.381 0.00 0.00 0.00 5.19
33 34 0.887933 CAAATTGGCCCTTACAGCGT 59.112 50.000 0.00 0.00 0.00 5.07
34 35 0.173255 CCAAATTGGCCCTTACAGCG 59.827 55.000 0.00 0.00 0.00 5.18
35 36 0.536724 CCCAAATTGGCCCTTACAGC 59.463 55.000 6.48 0.00 35.79 4.40
36 37 0.536724 GCCCAAATTGGCCCTTACAG 59.463 55.000 6.48 0.00 46.11 2.74
37 38 2.677508 GCCCAAATTGGCCCTTACA 58.322 52.632 6.48 0.00 46.11 2.41
45 46 0.764271 AACAGTTGGGCCCAAATTGG 59.236 50.000 38.70 27.26 37.70 3.16
46 47 1.881591 CAACAGTTGGGCCCAAATTG 58.118 50.000 38.70 35.39 37.70 2.32
47 48 0.108396 GCAACAGTTGGGCCCAAATT 59.892 50.000 38.70 27.73 37.70 1.82
48 49 1.754107 GCAACAGTTGGGCCCAAAT 59.246 52.632 38.70 35.04 37.70 2.32
49 50 2.790791 CGCAACAGTTGGGCCCAAA 61.791 57.895 38.70 20.15 37.70 3.28
50 51 2.626255 TACGCAACAGTTGGGCCCAA 62.626 55.000 34.07 34.07 46.40 4.12
51 52 2.626255 TTACGCAACAGTTGGGCCCA 62.626 55.000 24.45 24.45 46.40 5.36
52 53 1.248101 ATTACGCAACAGTTGGGCCC 61.248 55.000 26.03 17.59 46.40 5.80
53 54 1.455248 TATTACGCAACAGTTGGGCC 58.545 50.000 26.03 0.00 46.40 5.80
54 55 3.498082 CTTTATTACGCAACAGTTGGGC 58.502 45.455 26.03 7.80 46.40 5.36
56 57 4.419522 AGCTTTATTACGCAACAGTTGG 57.580 40.909 15.28 7.69 0.00 3.77
57 58 7.321271 GCATATAGCTTTATTACGCAACAGTTG 59.679 37.037 9.12 9.12 41.15 3.16
58 59 7.352739 GCATATAGCTTTATTACGCAACAGTT 58.647 34.615 0.00 0.00 41.15 3.16
59 60 6.888430 GCATATAGCTTTATTACGCAACAGT 58.112 36.000 0.00 0.00 41.15 3.55
96 97 9.305925 CTCTCTTTTACAATGCTTGAACTTTTT 57.694 29.630 3.37 0.00 0.00 1.94
97 98 8.686334 TCTCTCTTTTACAATGCTTGAACTTTT 58.314 29.630 3.37 0.00 0.00 2.27
98 99 8.131731 GTCTCTCTTTTACAATGCTTGAACTTT 58.868 33.333 3.37 0.00 0.00 2.66
99 100 7.500559 AGTCTCTCTTTTACAATGCTTGAACTT 59.499 33.333 3.37 0.00 0.00 2.66
100 101 6.995091 AGTCTCTCTTTTACAATGCTTGAACT 59.005 34.615 3.37 0.00 0.00 3.01
101 102 7.195839 AGTCTCTCTTTTACAATGCTTGAAC 57.804 36.000 3.37 0.00 0.00 3.18
102 103 8.902540 TTAGTCTCTCTTTTACAATGCTTGAA 57.097 30.769 3.37 0.00 0.00 2.69
103 104 8.939929 CATTAGTCTCTCTTTTACAATGCTTGA 58.060 33.333 3.37 0.00 0.00 3.02
104 105 8.180267 CCATTAGTCTCTCTTTTACAATGCTTG 58.820 37.037 0.00 0.00 0.00 4.01
105 106 7.885399 ACCATTAGTCTCTCTTTTACAATGCTT 59.115 33.333 0.00 0.00 0.00 3.91
106 107 7.335422 CACCATTAGTCTCTCTTTTACAATGCT 59.665 37.037 0.00 0.00 0.00 3.79
107 108 7.119846 ACACCATTAGTCTCTCTTTTACAATGC 59.880 37.037 0.00 0.00 0.00 3.56
108 109 8.553459 ACACCATTAGTCTCTCTTTTACAATG 57.447 34.615 0.00 0.00 0.00 2.82
109 110 8.598041 AGACACCATTAGTCTCTCTTTTACAAT 58.402 33.333 0.00 0.00 42.40 2.71
110 111 7.963532 AGACACCATTAGTCTCTCTTTTACAA 58.036 34.615 0.00 0.00 42.40 2.41
111 112 7.540474 AGACACCATTAGTCTCTCTTTTACA 57.460 36.000 0.00 0.00 42.40 2.41
122 123 4.096682 AGCTAACGAGAGACACCATTAGTC 59.903 45.833 0.00 0.00 36.26 2.59
123 124 4.017808 AGCTAACGAGAGACACCATTAGT 58.982 43.478 0.00 0.00 0.00 2.24
124 125 4.640789 AGCTAACGAGAGACACCATTAG 57.359 45.455 0.00 0.00 0.00 1.73
125 126 4.036498 GCTAGCTAACGAGAGACACCATTA 59.964 45.833 7.70 0.00 0.00 1.90
126 127 3.181485 GCTAGCTAACGAGAGACACCATT 60.181 47.826 7.70 0.00 0.00 3.16
127 128 2.359531 GCTAGCTAACGAGAGACACCAT 59.640 50.000 7.70 0.00 0.00 3.55
128 129 1.743958 GCTAGCTAACGAGAGACACCA 59.256 52.381 7.70 0.00 0.00 4.17
129 130 2.018515 AGCTAGCTAACGAGAGACACC 58.981 52.381 17.69 0.00 0.00 4.16
130 131 4.879104 TTAGCTAGCTAACGAGAGACAC 57.121 45.455 29.22 0.00 34.02 3.67
131 132 6.452494 AATTTAGCTAGCTAACGAGAGACA 57.548 37.500 31.98 17.85 38.14 3.41
132 133 8.130469 ACTAAATTTAGCTAGCTAACGAGAGAC 58.870 37.037 31.98 0.00 38.14 3.36
133 134 8.223177 ACTAAATTTAGCTAGCTAACGAGAGA 57.777 34.615 31.98 19.18 38.14 3.10
134 135 8.859517 AACTAAATTTAGCTAGCTAACGAGAG 57.140 34.615 31.98 26.23 38.14 3.20
189 190 1.446907 CAGTCTGCAGGGTCATCAAC 58.553 55.000 15.13 1.46 0.00 3.18
190 191 0.325933 CCAGTCTGCAGGGTCATCAA 59.674 55.000 15.13 0.00 0.00 2.57
191 192 0.545071 TCCAGTCTGCAGGGTCATCA 60.545 55.000 15.13 0.00 0.00 3.07
192 193 0.835941 ATCCAGTCTGCAGGGTCATC 59.164 55.000 15.13 0.00 0.00 2.92
193 194 0.545171 CATCCAGTCTGCAGGGTCAT 59.455 55.000 15.13 0.00 0.00 3.06
194 195 1.556373 CCATCCAGTCTGCAGGGTCA 61.556 60.000 15.13 0.00 0.00 4.02
195 196 1.222936 CCATCCAGTCTGCAGGGTC 59.777 63.158 15.13 5.15 0.00 4.46
196 197 1.136329 AACCATCCAGTCTGCAGGGT 61.136 55.000 15.13 8.36 0.00 4.34
197 198 0.393537 GAACCATCCAGTCTGCAGGG 60.394 60.000 15.13 7.58 0.00 4.45
198 199 0.393537 GGAACCATCCAGTCTGCAGG 60.394 60.000 15.13 0.00 45.79 4.85
199 200 0.742281 CGGAACCATCCAGTCTGCAG 60.742 60.000 7.63 7.63 46.97 4.41
200 201 1.296392 CGGAACCATCCAGTCTGCA 59.704 57.895 0.00 0.00 46.97 4.41
201 202 1.450312 CCGGAACCATCCAGTCTGC 60.450 63.158 0.00 0.00 46.97 4.26
202 203 0.108138 GACCGGAACCATCCAGTCTG 60.108 60.000 9.46 0.00 45.84 3.51
203 204 2.287829 GACCGGAACCATCCAGTCT 58.712 57.895 9.46 0.00 45.84 3.24
204 205 4.934989 GACCGGAACCATCCAGTC 57.065 61.111 9.46 0.00 46.97 3.51
205 206 1.229529 AGGACCGGAACCATCCAGT 60.230 57.895 9.46 0.00 46.97 4.00
206 207 1.221840 CAGGACCGGAACCATCCAG 59.778 63.158 9.46 0.00 46.97 3.86
207 208 2.297895 CCAGGACCGGAACCATCCA 61.298 63.158 9.46 0.00 46.97 3.41
208 209 2.590092 CCAGGACCGGAACCATCC 59.410 66.667 9.46 3.61 42.80 3.51
209 210 2.124695 GCCAGGACCGGAACCATC 60.125 66.667 9.46 0.00 0.00 3.51
210 211 4.096003 CGCCAGGACCGGAACCAT 62.096 66.667 9.46 0.00 0.00 3.55
212 213 4.011517 TTCGCCAGGACCGGAACC 62.012 66.667 9.46 11.76 0.00 3.62
213 214 2.741211 GTTCGCCAGGACCGGAAC 60.741 66.667 9.46 0.00 0.00 3.62
214 215 4.367023 CGTTCGCCAGGACCGGAA 62.367 66.667 9.46 0.00 0.00 4.30
216 217 2.287457 TAATCGTTCGCCAGGACCGG 62.287 60.000 0.00 0.00 0.00 5.28
217 218 0.458889 TTAATCGTTCGCCAGGACCG 60.459 55.000 0.00 0.00 0.00 4.79
218 219 1.865340 GATTAATCGTTCGCCAGGACC 59.135 52.381 0.00 0.00 0.00 4.46
219 220 1.521423 CGATTAATCGTTCGCCAGGAC 59.479 52.381 26.11 0.00 44.74 3.85
220 221 1.847818 CGATTAATCGTTCGCCAGGA 58.152 50.000 26.11 0.00 44.74 3.86
251 252 8.971073 GGCCATCATGGTTATAGCTTTATAATT 58.029 33.333 5.31 0.00 40.46 1.40
252 253 8.339247 AGGCCATCATGGTTATAGCTTTATAAT 58.661 33.333 5.01 0.00 40.46 1.28
253 254 7.698912 AGGCCATCATGGTTATAGCTTTATAA 58.301 34.615 5.01 0.00 40.46 0.98
254 255 7.270832 AGGCCATCATGGTTATAGCTTTATA 57.729 36.000 5.01 0.00 40.46 0.98
255 256 6.144845 AGGCCATCATGGTTATAGCTTTAT 57.855 37.500 5.01 0.00 40.46 1.40
256 257 5.582950 AGGCCATCATGGTTATAGCTTTA 57.417 39.130 5.01 0.00 40.46 1.85
257 258 4.459852 AGGCCATCATGGTTATAGCTTT 57.540 40.909 5.01 0.00 40.46 3.51
258 259 4.459852 AAGGCCATCATGGTTATAGCTT 57.540 40.909 5.01 0.00 40.46 3.74
259 260 4.105377 AGAAAGGCCATCATGGTTATAGCT 59.895 41.667 5.01 0.00 40.46 3.32
260 261 4.401925 AGAAAGGCCATCATGGTTATAGC 58.598 43.478 5.01 0.00 40.46 2.97
261 262 6.302269 AGAAGAAAGGCCATCATGGTTATAG 58.698 40.000 5.01 0.00 40.46 1.31
262 263 6.101734 AGAGAAGAAAGGCCATCATGGTTATA 59.898 38.462 5.01 0.00 40.46 0.98
263 264 5.103771 AGAGAAGAAAGGCCATCATGGTTAT 60.104 40.000 5.01 0.00 40.46 1.89
264 265 4.228210 AGAGAAGAAAGGCCATCATGGTTA 59.772 41.667 5.01 0.00 40.46 2.85
265 266 3.011032 AGAGAAGAAAGGCCATCATGGTT 59.989 43.478 5.01 0.00 40.46 3.67
266 267 2.579860 AGAGAAGAAAGGCCATCATGGT 59.420 45.455 5.01 0.00 40.46 3.55
267 268 3.294038 AGAGAAGAAAGGCCATCATGG 57.706 47.619 5.01 0.00 41.55 3.66
268 269 6.764308 TTTTAGAGAAGAAAGGCCATCATG 57.236 37.500 5.01 0.00 0.00 3.07
304 305 7.768120 TGTTCTAGAAAACTACACCGGTAAAAA 59.232 33.333 6.87 0.00 0.00 1.94
305 306 7.271511 TGTTCTAGAAAACTACACCGGTAAAA 58.728 34.615 6.87 0.00 0.00 1.52
306 307 6.815089 TGTTCTAGAAAACTACACCGGTAAA 58.185 36.000 6.87 0.00 0.00 2.01
307 308 6.403866 TGTTCTAGAAAACTACACCGGTAA 57.596 37.500 6.87 0.00 0.00 2.85
308 309 6.594788 ATGTTCTAGAAAACTACACCGGTA 57.405 37.500 6.87 0.00 0.00 4.02
309 310 4.942761 TGTTCTAGAAAACTACACCGGT 57.057 40.909 6.78 0.00 0.00 5.28
310 311 6.128363 GGAAATGTTCTAGAAAACTACACCGG 60.128 42.308 6.78 0.00 0.00 5.28
311 312 6.649557 AGGAAATGTTCTAGAAAACTACACCG 59.350 38.462 6.78 0.00 0.00 4.94
312 313 7.981102 AGGAAATGTTCTAGAAAACTACACC 57.019 36.000 6.78 5.66 0.00 4.16
359 360 0.881118 GCTCGCATCCACTCCAAAAA 59.119 50.000 0.00 0.00 0.00 1.94
360 361 1.298157 CGCTCGCATCCACTCCAAAA 61.298 55.000 0.00 0.00 0.00 2.44
361 362 1.741401 CGCTCGCATCCACTCCAAA 60.741 57.895 0.00 0.00 0.00 3.28
362 363 2.125552 CGCTCGCATCCACTCCAA 60.126 61.111 0.00 0.00 0.00 3.53
363 364 3.068064 TCGCTCGCATCCACTCCA 61.068 61.111 0.00 0.00 0.00 3.86
364 365 2.279120 CTCGCTCGCATCCACTCC 60.279 66.667 0.00 0.00 0.00 3.85
365 366 1.587613 GTCTCGCTCGCATCCACTC 60.588 63.158 0.00 0.00 0.00 3.51
366 367 1.599606 AAGTCTCGCTCGCATCCACT 61.600 55.000 0.00 0.00 0.00 4.00
367 368 1.153745 AAGTCTCGCTCGCATCCAC 60.154 57.895 0.00 0.00 0.00 4.02
368 369 1.153765 CAAGTCTCGCTCGCATCCA 60.154 57.895 0.00 0.00 0.00 3.41
369 370 2.520904 GCAAGTCTCGCTCGCATCC 61.521 63.158 0.00 0.00 0.00 3.51
370 371 0.248661 TAGCAAGTCTCGCTCGCATC 60.249 55.000 0.00 0.00 40.96 3.91
371 372 0.248825 CTAGCAAGTCTCGCTCGCAT 60.249 55.000 0.00 0.00 40.96 4.73
372 373 1.137614 CTAGCAAGTCTCGCTCGCA 59.862 57.895 0.00 0.00 40.96 5.10
373 374 1.587613 CCTAGCAAGTCTCGCTCGC 60.588 63.158 0.00 0.00 40.96 5.03
374 375 0.248296 GACCTAGCAAGTCTCGCTCG 60.248 60.000 0.00 0.00 40.96 5.03
375 376 0.811915 TGACCTAGCAAGTCTCGCTC 59.188 55.000 0.00 0.00 40.96 5.03
376 377 1.203523 CTTGACCTAGCAAGTCTCGCT 59.796 52.381 0.00 0.00 43.62 4.93
377 378 1.634702 CTTGACCTAGCAAGTCTCGC 58.365 55.000 0.00 0.00 40.22 5.03
378 379 1.634702 GCTTGACCTAGCAAGTCTCG 58.365 55.000 10.60 0.00 45.41 4.04
379 380 1.406205 GGGCTTGACCTAGCAAGTCTC 60.406 57.143 12.55 3.04 46.77 3.36
380 381 0.615850 GGGCTTGACCTAGCAAGTCT 59.384 55.000 12.55 0.00 46.77 3.24
381 382 0.324943 TGGGCTTGACCTAGCAAGTC 59.675 55.000 10.60 8.52 46.85 3.01
382 383 0.995024 ATGGGCTTGACCTAGCAAGT 59.005 50.000 10.60 0.00 45.41 3.16
383 384 1.386533 CATGGGCTTGACCTAGCAAG 58.613 55.000 5.90 5.90 46.18 4.01
384 385 0.680921 GCATGGGCTTGACCTAGCAA 60.681 55.000 5.88 0.00 43.02 3.91
385 386 1.077501 GCATGGGCTTGACCTAGCA 60.078 57.895 5.88 0.00 43.02 3.49
386 387 1.825622 GGCATGGGCTTGACCTAGC 60.826 63.158 0.00 0.00 40.87 3.42
387 388 1.152881 GGGCATGGGCTTGACCTAG 60.153 63.158 5.72 0.00 42.01 3.02
388 389 3.006677 GGGCATGGGCTTGACCTA 58.993 61.111 5.72 0.00 42.01 3.08
390 391 1.037579 GTAAGGGCATGGGCTTGACC 61.038 60.000 4.88 4.88 46.02 4.02
391 392 0.323360 TGTAAGGGCATGGGCTTGAC 60.323 55.000 0.00 0.00 40.87 3.18
392 393 0.407528 TTGTAAGGGCATGGGCTTGA 59.592 50.000 0.00 0.00 40.87 3.02
393 394 1.205417 CTTTGTAAGGGCATGGGCTTG 59.795 52.381 0.00 0.00 40.87 4.01
394 395 1.077005 TCTTTGTAAGGGCATGGGCTT 59.923 47.619 0.00 0.00 40.87 4.35
395 396 0.704076 TCTTTGTAAGGGCATGGGCT 59.296 50.000 0.00 0.00 40.87 5.19
396 397 1.478105 CTTCTTTGTAAGGGCATGGGC 59.522 52.381 0.00 0.00 40.13 5.36
397 398 3.019564 CTCTTCTTTGTAAGGGCATGGG 58.980 50.000 0.00 0.00 0.00 4.00
398 399 3.955471 TCTCTTCTTTGTAAGGGCATGG 58.045 45.455 0.00 0.00 0.00 3.66
399 400 5.649395 TCATTCTCTTCTTTGTAAGGGCATG 59.351 40.000 0.00 0.00 33.45 4.06
400 401 5.819991 TCATTCTCTTCTTTGTAAGGGCAT 58.180 37.500 0.00 0.00 0.00 4.40
401 402 5.013079 TCTCATTCTCTTCTTTGTAAGGGCA 59.987 40.000 0.00 0.00 0.00 5.36
402 403 5.491982 TCTCATTCTCTTCTTTGTAAGGGC 58.508 41.667 0.00 0.00 0.00 5.19
403 404 7.986085 TTTCTCATTCTCTTCTTTGTAAGGG 57.014 36.000 0.00 0.00 0.00 3.95
404 405 8.457261 CCATTTCTCATTCTCTTCTTTGTAAGG 58.543 37.037 0.00 0.00 0.00 2.69
405 406 8.457261 CCCATTTCTCATTCTCTTCTTTGTAAG 58.543 37.037 0.00 0.00 0.00 2.34
406 407 7.094205 GCCCATTTCTCATTCTCTTCTTTGTAA 60.094 37.037 0.00 0.00 0.00 2.41
407 408 6.375455 GCCCATTTCTCATTCTCTTCTTTGTA 59.625 38.462 0.00 0.00 0.00 2.41
408 409 5.184671 GCCCATTTCTCATTCTCTTCTTTGT 59.815 40.000 0.00 0.00 0.00 2.83
409 410 5.418209 AGCCCATTTCTCATTCTCTTCTTTG 59.582 40.000 0.00 0.00 0.00 2.77
410 411 5.578073 AGCCCATTTCTCATTCTCTTCTTT 58.422 37.500 0.00 0.00 0.00 2.52
411 412 5.190357 AGCCCATTTCTCATTCTCTTCTT 57.810 39.130 0.00 0.00 0.00 2.52
412 413 4.858965 AGCCCATTTCTCATTCTCTTCT 57.141 40.909 0.00 0.00 0.00 2.85
413 414 5.008514 GCTTAGCCCATTTCTCATTCTCTTC 59.991 44.000 0.00 0.00 0.00 2.87
414 415 4.886489 GCTTAGCCCATTTCTCATTCTCTT 59.114 41.667 0.00 0.00 0.00 2.85
415 416 4.459330 GCTTAGCCCATTTCTCATTCTCT 58.541 43.478 0.00 0.00 0.00 3.10
416 417 3.567585 GGCTTAGCCCATTTCTCATTCTC 59.432 47.826 13.12 0.00 44.06 2.87
417 418 3.560105 GGCTTAGCCCATTTCTCATTCT 58.440 45.455 13.12 0.00 44.06 2.40
418 419 3.998099 GGCTTAGCCCATTTCTCATTC 57.002 47.619 13.12 0.00 44.06 2.67
431 432 1.803289 CTTTTCGGCTGGGCTTAGC 59.197 57.895 0.00 0.00 42.94 3.09
432 433 0.960364 TGCTTTTCGGCTGGGCTTAG 60.960 55.000 0.00 0.00 0.00 2.18
433 434 0.323360 ATGCTTTTCGGCTGGGCTTA 60.323 50.000 0.00 0.00 0.00 3.09
434 435 1.607467 ATGCTTTTCGGCTGGGCTT 60.607 52.632 0.00 0.00 0.00 4.35
444 445 2.413371 GGAAGAGACGCACATGCTTTTC 60.413 50.000 1.82 0.00 39.32 2.29
445 446 1.537202 GGAAGAGACGCACATGCTTTT 59.463 47.619 1.82 0.00 39.32 2.27
457 458 1.006571 TTGGTCACGCGGAAGAGAC 60.007 57.895 12.47 10.03 33.96 3.36
459 460 1.009389 GTCTTGGTCACGCGGAAGAG 61.009 60.000 12.47 0.25 0.00 2.85
460 461 1.006571 GTCTTGGTCACGCGGAAGA 60.007 57.895 12.47 6.87 0.00 2.87
461 462 2.027625 GGTCTTGGTCACGCGGAAG 61.028 63.158 12.47 4.44 0.00 3.46
469 470 1.229529 GGGAGGGAGGTCTTGGTCA 60.230 63.158 0.00 0.00 0.00 4.02
472 473 1.723288 GATAGGGAGGGAGGTCTTGG 58.277 60.000 0.00 0.00 0.00 3.61
473 474 1.333177 CGATAGGGAGGGAGGTCTTG 58.667 60.000 0.00 0.00 0.00 3.02
495 496 4.849329 GTAGCGACGGTGGCGGAG 62.849 72.222 10.33 0.00 35.00 4.63
502 503 2.341176 GGTTGTGGTAGCGACGGT 59.659 61.111 4.41 4.41 0.00 4.83
511 512 1.227853 GAGGACTTGCGGTTGTGGT 60.228 57.895 0.00 0.00 0.00 4.16
543 544 4.812476 CTTCGCCATGGTCGCCGA 62.812 66.667 19.64 14.30 0.00 5.54
563 564 2.274760 GGAGCTCCTGCCATTGCT 59.725 61.111 26.25 0.00 40.80 3.91
577 578 2.043450 AGTGGAGAGGCGGAGGAG 60.043 66.667 0.00 0.00 0.00 3.69
578 579 2.363018 CAGTGGAGAGGCGGAGGA 60.363 66.667 0.00 0.00 0.00 3.71
579 580 4.154347 GCAGTGGAGAGGCGGAGG 62.154 72.222 0.00 0.00 0.00 4.30
781 800 4.574674 AAAGGGCATGATGAGTAGTTGA 57.425 40.909 0.00 0.00 0.00 3.18
782 801 5.066505 GGTTAAAGGGCATGATGAGTAGTTG 59.933 44.000 0.00 0.00 0.00 3.16
783 802 5.193679 GGTTAAAGGGCATGATGAGTAGTT 58.806 41.667 0.00 0.00 0.00 2.24
784 803 4.227300 TGGTTAAAGGGCATGATGAGTAGT 59.773 41.667 0.00 0.00 0.00 2.73
785 804 4.576463 GTGGTTAAAGGGCATGATGAGTAG 59.424 45.833 0.00 0.00 0.00 2.57
786 805 4.523083 GTGGTTAAAGGGCATGATGAGTA 58.477 43.478 0.00 0.00 0.00 2.59
787 806 3.356290 GTGGTTAAAGGGCATGATGAGT 58.644 45.455 0.00 0.00 0.00 3.41
788 807 2.689983 GGTGGTTAAAGGGCATGATGAG 59.310 50.000 0.00 0.00 0.00 2.90
954 1041 2.642254 CGGGAGGTTGGCGTACTGA 61.642 63.158 0.00 0.00 0.00 3.41
958 1045 4.077184 CAGCGGGAGGTTGGCGTA 62.077 66.667 0.00 0.00 39.46 4.42
962 1049 2.747855 GAAGCAGCGGGAGGTTGG 60.748 66.667 0.00 0.00 39.46 3.77
963 1050 1.377725 ATGAAGCAGCGGGAGGTTG 60.378 57.895 0.00 0.00 39.46 3.77
964 1051 1.377725 CATGAAGCAGCGGGAGGTT 60.378 57.895 0.00 0.00 39.46 3.50
989 1076 0.758734 TGGATACATCCCCAAGAGCG 59.241 55.000 5.80 0.00 46.59 5.03
1043 1130 1.067846 GTGCACTGTACATCGACTGGA 60.068 52.381 10.32 0.00 0.00 3.86
1070 1175 2.427245 TAGGAGCCCTCTTGAGCGC 61.427 63.158 0.00 0.00 34.61 5.92
1180 1285 0.988063 TACCAATGCAGGCTACCACA 59.012 50.000 0.00 0.00 0.00 4.17
1203 1308 6.537301 TGTCAAATATCTTTATCACGTGGTCC 59.463 38.462 17.00 0.00 0.00 4.46
1552 1681 1.097232 CTGCGATGGAATCCAGCAAA 58.903 50.000 18.28 3.70 40.32 3.68
1572 1701 1.338769 ACTTGTGTACGAATGAGGCCC 60.339 52.381 0.00 0.00 0.00 5.80
1595 1724 5.125417 TGCAAAACTAGAGTTTGTTTGAGCT 59.875 36.000 18.44 0.00 46.47 4.09
1626 1755 5.741011 ACATAATCTTCTAGTGCCGGAAAA 58.259 37.500 5.05 0.00 0.00 2.29
1722 1851 9.507280 CAATTCATACCATTACAACTCATGAAC 57.493 33.333 0.00 0.00 34.72 3.18
1723 1852 8.685427 CCAATTCATACCATTACAACTCATGAA 58.315 33.333 0.00 0.00 35.92 2.57
1784 1914 9.601217 GGAGCTTCTTGATCATAAAACTAGTAA 57.399 33.333 0.00 0.00 31.67 2.24
1869 1999 0.321564 TTCGCACCAACATGCTAGCT 60.322 50.000 17.23 0.00 43.80 3.32
1886 2016 8.961092 GGTTAACAAAACGAATTCCTAGTTTTC 58.039 33.333 15.50 7.81 43.55 2.29
1894 2024 8.757789 CCTTAAAAGGTTAACAAAACGAATTCC 58.242 33.333 8.10 0.00 41.41 3.01
1911 2041 6.339587 TCAATTGGCAACTACCTTAAAAGG 57.660 37.500 0.00 7.22 45.38 3.11
1917 2047 3.445096 GCAGATCAATTGGCAACTACCTT 59.555 43.478 0.00 0.00 37.61 3.50
1920 3853 3.019564 AGGCAGATCAATTGGCAACTAC 58.980 45.455 0.00 0.00 42.98 2.73
2016 3952 8.908903 ACATTGACTAAACATTTTAACCAGTGA 58.091 29.630 0.00 0.00 0.00 3.41
2041 3977 7.506328 ACTTAGAAACAGGAAACCAATGTAC 57.494 36.000 0.00 0.00 0.00 2.90
2100 4036 5.489792 ACTTGCTAGTCATCAAAGAGGAA 57.510 39.130 0.00 0.00 0.00 3.36
2157 4093 5.411053 TGATGTGATCATGCAACTTAACGAA 59.589 36.000 0.00 0.00 33.59 3.85
2216 4155 4.517285 TGCAATGGATACTTGGAGAAGAC 58.483 43.478 0.00 0.00 32.98 3.01
2264 4249 5.581126 TGATCCCAAACAATGCAATAGAC 57.419 39.130 0.00 0.00 0.00 2.59
2268 4253 4.468510 ACAGATGATCCCAAACAATGCAAT 59.531 37.500 0.00 0.00 0.00 3.56
2320 4306 2.594592 GGCGGGCAGTTCAGTGTT 60.595 61.111 0.00 0.00 0.00 3.32
2334 4321 3.124921 GTGGTTCCGGATGTGGCG 61.125 66.667 4.15 0.00 0.00 5.69
2343 4330 1.566018 GCTTTCGACCAGTGGTTCCG 61.566 60.000 17.93 16.48 35.25 4.30
2372 4359 4.829064 TGTACTGCCACACAAATCTTTC 57.171 40.909 0.00 0.00 0.00 2.62
2389 4376 9.158233 TCAGCCTACTTTTACAATTGTATGTAC 57.842 33.333 18.69 10.89 35.60 2.90
2419 4419 4.391830 GCAGTACCAAATGATCAGAACGAA 59.608 41.667 0.09 0.00 0.00 3.85
2481 4485 2.236146 TGTAGCCTTACAGGTGATGTGG 59.764 50.000 0.00 0.00 43.80 4.17
2490 4494 3.944055 ACTGAGTGTGTAGCCTTACAG 57.056 47.619 0.00 0.00 40.33 2.74
2495 4499 3.641906 AGTGTAAACTGAGTGTGTAGCCT 59.358 43.478 0.00 0.00 0.00 4.58
2497 4501 4.209288 CACAGTGTAAACTGAGTGTGTAGC 59.791 45.833 20.22 0.00 39.99 3.58
2498 4502 4.209288 GCACAGTGTAAACTGAGTGTGTAG 59.791 45.833 20.22 0.76 39.99 2.74
2499 4503 4.116961 GCACAGTGTAAACTGAGTGTGTA 58.883 43.478 20.22 0.00 39.99 2.90
2500 4504 2.936498 GCACAGTGTAAACTGAGTGTGT 59.064 45.455 20.22 0.00 39.99 3.72
2515 4604 8.121305 TGGAGATGTTAAATTAATTGCACAGT 57.879 30.769 14.72 7.60 0.00 3.55
2520 4609 7.009540 GCACACTGGAGATGTTAAATTAATTGC 59.990 37.037 0.39 0.00 0.00 3.56
2521 4610 7.218773 CGCACACTGGAGATGTTAAATTAATTG 59.781 37.037 0.39 0.00 0.00 2.32
2522 4611 7.120579 TCGCACACTGGAGATGTTAAATTAATT 59.879 33.333 0.00 0.00 0.00 1.40
2523 4612 6.597672 TCGCACACTGGAGATGTTAAATTAAT 59.402 34.615 0.00 0.00 0.00 1.40
2527 4616 3.937814 TCGCACACTGGAGATGTTAAAT 58.062 40.909 0.00 0.00 0.00 1.40
2560 4649 3.644884 TGAGGACTTCTCGACAGTTTC 57.355 47.619 0.00 0.00 45.32 2.78
2565 4654 5.619309 CGTCTAAAATGAGGACTTCTCGACA 60.619 44.000 0.00 0.00 45.32 4.35
2567 4656 4.674623 GCGTCTAAAATGAGGACTTCTCGA 60.675 45.833 0.00 0.00 45.32 4.04
2571 4660 3.619038 CCAGCGTCTAAAATGAGGACTTC 59.381 47.826 0.00 0.00 0.00 3.01
2573 4662 2.093447 CCCAGCGTCTAAAATGAGGACT 60.093 50.000 0.00 0.00 0.00 3.85
2575 4664 1.906574 ACCCAGCGTCTAAAATGAGGA 59.093 47.619 0.00 0.00 0.00 3.71
2577 4666 2.972625 TGACCCAGCGTCTAAAATGAG 58.027 47.619 0.00 0.00 42.49 2.90
2582 4671 2.922740 ACTTTGACCCAGCGTCTAAA 57.077 45.000 0.00 0.00 42.49 1.85
2588 4677 1.164411 TGCAATACTTTGACCCAGCG 58.836 50.000 0.00 0.00 34.60 5.18
2589 4678 3.316308 CCTATGCAATACTTTGACCCAGC 59.684 47.826 0.00 0.00 34.60 4.85
2590 4679 4.526970 ACCTATGCAATACTTTGACCCAG 58.473 43.478 0.00 0.00 34.60 4.45
2591 4680 4.584638 ACCTATGCAATACTTTGACCCA 57.415 40.909 0.00 0.00 34.60 4.51
2592 4681 5.408604 CGATACCTATGCAATACTTTGACCC 59.591 44.000 0.00 0.00 34.60 4.46
2593 4682 5.107065 GCGATACCTATGCAATACTTTGACC 60.107 44.000 0.00 0.00 34.60 4.02
2594 4683 5.696724 AGCGATACCTATGCAATACTTTGAC 59.303 40.000 0.00 0.00 34.60 3.18
2595 4684 5.853936 AGCGATACCTATGCAATACTTTGA 58.146 37.500 0.00 0.00 34.60 2.69
2596 4685 6.545504 AAGCGATACCTATGCAATACTTTG 57.454 37.500 0.00 0.00 35.85 2.77
2597 4686 7.931948 AGTAAAGCGATACCTATGCAATACTTT 59.068 33.333 0.00 0.00 32.14 2.66
2598 4687 7.442656 AGTAAAGCGATACCTATGCAATACTT 58.557 34.615 0.00 0.00 32.14 2.24
2599 4688 6.994221 AGTAAAGCGATACCTATGCAATACT 58.006 36.000 0.00 0.00 31.63 2.12
2600 4689 6.310711 GGAGTAAAGCGATACCTATGCAATAC 59.689 42.308 0.00 0.00 0.00 1.89
2601 4690 6.014925 TGGAGTAAAGCGATACCTATGCAATA 60.015 38.462 0.00 0.00 0.00 1.90
2602 4691 5.221641 TGGAGTAAAGCGATACCTATGCAAT 60.222 40.000 0.00 0.00 0.00 3.56
2603 4692 4.100344 TGGAGTAAAGCGATACCTATGCAA 59.900 41.667 0.00 0.00 0.00 4.08
2604 4693 3.639561 TGGAGTAAAGCGATACCTATGCA 59.360 43.478 0.00 0.00 0.00 3.96
2605 4694 4.252971 TGGAGTAAAGCGATACCTATGC 57.747 45.455 0.00 0.00 0.00 3.14
2606 4695 9.436957 AAATTATGGAGTAAAGCGATACCTATG 57.563 33.333 0.00 0.00 0.00 2.23
2607 4696 9.436957 CAAATTATGGAGTAAAGCGATACCTAT 57.563 33.333 0.00 0.00 0.00 2.57
2608 4697 8.426489 ACAAATTATGGAGTAAAGCGATACCTA 58.574 33.333 0.00 0.00 0.00 3.08
2609 4698 7.280356 ACAAATTATGGAGTAAAGCGATACCT 58.720 34.615 0.00 0.00 0.00 3.08
2610 4699 7.492352 ACAAATTATGGAGTAAAGCGATACC 57.508 36.000 0.00 0.00 0.00 2.73
2611 4700 8.395633 ACAACAAATTATGGAGTAAAGCGATAC 58.604 33.333 0.00 0.00 0.00 2.24
2612 4701 8.394877 CACAACAAATTATGGAGTAAAGCGATA 58.605 33.333 0.00 0.00 0.00 2.92
2613 4702 7.250569 CACAACAAATTATGGAGTAAAGCGAT 58.749 34.615 0.00 0.00 0.00 4.58
2614 4703 6.348950 CCACAACAAATTATGGAGTAAAGCGA 60.349 38.462 0.00 0.00 33.80 4.93
2615 4704 5.799936 CCACAACAAATTATGGAGTAAAGCG 59.200 40.000 0.00 0.00 33.80 4.68
2616 4705 6.687604 ACCACAACAAATTATGGAGTAAAGC 58.312 36.000 0.00 0.00 36.04 3.51
2617 4706 9.840427 CTAACCACAACAAATTATGGAGTAAAG 57.160 33.333 0.00 0.00 36.04 1.85
2618 4707 9.357161 ACTAACCACAACAAATTATGGAGTAAA 57.643 29.630 0.00 0.00 36.04 2.01
2619 4708 8.927675 ACTAACCACAACAAATTATGGAGTAA 57.072 30.769 0.00 0.00 36.04 2.24
2620 4709 8.380099 AGACTAACCACAACAAATTATGGAGTA 58.620 33.333 0.00 0.00 36.04 2.59
2621 4710 7.231467 AGACTAACCACAACAAATTATGGAGT 58.769 34.615 0.00 0.00 36.04 3.85
2622 4711 7.687941 AGACTAACCACAACAAATTATGGAG 57.312 36.000 0.00 0.00 36.04 3.86
2623 4712 8.158132 TGTAGACTAACCACAACAAATTATGGA 58.842 33.333 0.00 0.00 36.04 3.41
2624 4713 8.330466 TGTAGACTAACCACAACAAATTATGG 57.670 34.615 0.00 0.00 38.26 2.74
2625 4714 8.999431 ACTGTAGACTAACCACAACAAATTATG 58.001 33.333 0.00 0.00 0.00 1.90
2628 4717 9.569122 AATACTGTAGACTAACCACAACAAATT 57.431 29.630 0.00 0.00 0.00 1.82
2629 4718 9.569122 AAATACTGTAGACTAACCACAACAAAT 57.431 29.630 0.00 0.00 0.00 2.32
2630 4719 8.967664 AAATACTGTAGACTAACCACAACAAA 57.032 30.769 0.00 0.00 0.00 2.83
2631 4720 8.832521 CAAAATACTGTAGACTAACCACAACAA 58.167 33.333 0.00 0.00 0.00 2.83
2632 4721 7.988599 ACAAAATACTGTAGACTAACCACAACA 59.011 33.333 0.00 0.00 0.00 3.33
2633 4722 8.374327 ACAAAATACTGTAGACTAACCACAAC 57.626 34.615 0.00 0.00 0.00 3.32
2634 4723 8.967664 AACAAAATACTGTAGACTAACCACAA 57.032 30.769 0.00 0.00 0.00 3.33
2642 4731 8.822805 TCCTGGATTAACAAAATACTGTAGACT 58.177 33.333 0.00 0.00 0.00 3.24
2643 4732 9.614792 ATCCTGGATTAACAAAATACTGTAGAC 57.385 33.333 2.57 0.00 0.00 2.59
2647 4736 9.533831 AGAAATCCTGGATTAACAAAATACTGT 57.466 29.630 21.62 1.90 31.46 3.55
2648 4737 9.793252 CAGAAATCCTGGATTAACAAAATACTG 57.207 33.333 21.62 14.19 39.23 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.