>input_sequence_72072
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----------------------------------------------ATGTATCCACACAGCCCTACCGGCGAGTACCGGC
TATTGCTCTTCCAGTC---------------GATGTACAGTGCACT---GCCTGGCGCTCAAGAGGGCTCCTACGTCTTC
ACGATAGGCTCCGGCCAGCCGCCCAGGCACATAGGATGCCCCGATGCGGAGGAACTGATATGCATCCCCGGATCTGTTCT
GTTCTGTGGTAGCCTGCATTGGTATACGGACCACGT------GATAAAGATATTTGACACCATCACCGAGTCGTTCCGGC
AGATGCGCTCTCCGTTTGTTCCTGGCCAT------GCTCGCCTGTTTGAGATGGATGGCAACATGCTTGGCATGTCCACT
TTTAATGGTGAAGGGACACCTGTTGATATCTGGGTGGTGCAAGA------CTACAAAGACGAGGTCTGGGCATTGAAATA
TCGGGTTGAATTGCCGGTTTCAGAGATCAGAGTGCAATTTGGAATGTTTGAAATTAAATATTGTCATGTGAGAGCCGCGT
CTTGTAA---GGGTGATGTGCTTGTGCTGGTCGAATTTGATGAT---TGGCTACTTCAAATTGATATCAATGGCAGGTTG
TTTGCTGGATTCCATCGCAGGGGCCTCATTCGTACACAAGTCCAGCTCAAACAAACTCTAGTTTTGCACACTTTTTTTCC
GGCACTAGAAGATTATGTTGTGAACGCTTTGCCTTCCGTTTGA-------------------------------------
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-------------------------------------------
>chr2B_1_TraesCS2B01G107000
TTGCTGATGTGAATGTTCCAGCTCCTGTAGCTGACGCTGTAAGGGCCAATTTGGGCCCAACTGTTGCGTAATAAAGCTAT
ATGCTTGCTCTCAAAAAAAAAGTTCAAGCATTGTAAAAGAGAGACTAATGGTGTCTCTCGTTAGCTAGCTAAATTTAGTT
ATTTGATGAATAATTTATATTGTAATTGGGTTGATGACCCTGCAGACTGGATGGTTCCGGTCCTGGCGAACGATTAATCG
CTGTTTAATTAAATTATAAAGCTATAACCATGATGGCCTTTCTTCTCTAAAAAAAAGGTATATTTTTTTACCGGTGTAGT
TTTCTAGAACATTTCCTTTTTTCCAAAAAAAAAAACTTTTTTTTGGAGTGGATGCGAGCGAGACTTGCTAGGTCAAGCCC
ATGCCCTTACAAAGAAGAGAATGAGAAATGGGCTAAGCCCAGCCGAAAAGCATGTGCGTCTCTTCCGCGTGACCAAGACC
TCCCTCCCTATCGGTCTCCGCCACCGTCGCTACCACAACCGCAAGTCCTCTCGCTCCTCCCGGTCGGCGACCATGGCGAA
GGCAGCAATGGCAGGAGCTCCT---CCGCCTCTCCACTGCGGCATCCCGGAAGAGATCACCATCTGGGAGATCCTCGTCC
GCCTGCCCCCCAAGGCCCTCCTCCGCTGCCGCGCCGTCTGCCGCGCATGGCGCCGCGCCACCTCCACCCGCGACTTCCTC
CTCGCTCACCACGGCCACCAGCCCTCCCTCCCCCTCATCTACGGCGAAGACGGCAAC---------------TCCGTACT
CAACTACTCATCATGCCCTTTAACCACCGGGCAGGGC------------------------CCGTCGCCGCCGACTCC--
-------GTCGCGCGACTTTACAGCGTC---------------GA--------CGGCGCCCTGTTCCAGGCCTCCTGCGA
CGGCCTCCTCGTCATCTGCGTCCACGGCAA------------GCACTTCTCCGTCCGCAACCCGGCGACTCGTCACTTCG
TCAGTACGCCAACCTCCCGCTGCTTCATGGCTTCACGCTCTTGGGGATGTATCCACACAGCCCTACCGGCGAGTACCGGC
TATTGCTCTTCCAGTC---------------GATGTACAGTGCACT---GCCTGGCGCTCAAGAGGGCTCCTACGTCTTC
ACGATAGGCTCCGGCCAGCCGCCCAGGCACATAGGATGCCCCGATGCGGAGGAACTGATATGCATCCCCGGATCTGTTCT
GTTCTGTGGTAGCCTGCATTGGTATACGGACCACGT------GATAAAGATATTTGACACCATCACCGAGTCGTTCCGGC
AGATGCGCTCTCCGTTTGTTCCTGGCCAT------GCTCGCCTGTTTGAGATGGATGGCAACATGCTTGGCATGTCCACT
TTTAATGGTGAAGGGACACCTGTTGATATCTGGGTGGTGCAAGA------CTACAAAGACGAGGTCTGGGCATTGAAATA
TCGGGTTGAATTGCCGGTTTCAGAGATCAGAGTGCAATTTGGAATGTTTGAAATTAAATATTGTCATGTGAGAGCCGCGT
CTTGTAA---GGGTGATGTGCTTGTGCTGGTCGAATTTGATGAT---TGGCTACTTCAAATTGATATCAATGGCAGGTTG
TTTGCTGGATTCCATCGCAGGGGCCTCATTCGTACACAAGTCCAGCTCAAACAAACTCTAGTTTTGCACACTTTTTTTCC
GGCACTAGAAGATTATGTTGTGAACGCTTTGCCTTCCGTTTGACAGCTGTTATGTGAGGTGGTGATTCTAAATTGGCCAA
CTGTCAGTATGTTCATGAGTTGTAATGGTATGAA-TTGGGTCCACTATGAGCCGGTTAGTTTCATTTCGATGTTTACTAG
TTTTATGATCAAGAAGCTCCGACTGTTTCATGGTTGCATGAAATTTATACTTGTGTGAATATCCTTTTGGGTTGAAGTAG
CTAGCATGTTGGTGCGAAAACTAGGAATTCGTTTTGTTAACCTTTTAAG-------------------------------
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------------GTAGTTGCCAATTGATCTGCCT--TGTCTCTGTTTTCCTTTGAACTGAAGAATTGATTTGGTTTTTTA
-ATCGAGGTTTTCTTCTTTCTTTGATATCATTCACTGGTTAAAATGTTTAGTCAATGTACATTGGTTTCCTGTTTCTAAG
TTCTCTTGTAGCTGATGATGAAATTAGGGCAGGTTTTCCTCTTTGATGACTAGCAAGTTGAACCTCATTTTTTCAAAGAG
TGTGGAGCATTGTTCGTTAAGTTGCATGATCACATCATAGTCGA---CTTAGTGAAACGTTCTGTTGCAATTCAGTCTTC
TCCAAGTATC-----CA-TTGCATCTGGTTAGGTGTTGACATGTTC----------------------------------
------TTGTCTATTGCATTGTTTGGGATCATCTGTACTCAGGTTCCAT-TTGTGTTCCCCTTCAAACACTG-AACTGCC
CGCCACATCCGGAACCACTGGTCGAAAGCAGGTTGTCTGAAAGATTTGTGTGGCAGTA---------CATACAATTGTAA
AA----GTAGGCTGAAAATTCGTTCTGATCATTTGGTACTGCACGTACTATGTGCCATTGCAGGGTAATTG----CTCAG
CTGCCCACATCACCTGTAAGGCTA-CACACT-------------------------------------------------
-----------------------------------CAGTTTACACTGTGCAATTAATTTAACATCTCCAGTGTGCGATAT
GATTATATGAAACTGTCGAGAAGTCCTCATTTTAGACGCTGGGTCAAAGTATTGCATAGGTATCGCTTTACTCCATAATT
TGTTGTGGTTAGTCTACAGTATTTTGTTAATCCAGGATTTCTG
>chr2A_436
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-----------------------------------AGCCCAGCCCGAAAGCATGTGCTTAATTTCCGCGAGAGAAAGACC
TCCTCCC----------CCGCCGCCGTCGCTGCCACAACCGCAAGTCCACTCGCTCCTCCCAGCCGGCGACCATGGCCAT
A---------GCAGGAG---CT---ACGCTTCTCCACCGCGGCATCCCGGACGAAATTACCATCTGGGAGATCGTCGTCC
GCCTGCCCACCAAAGCCCTCCTCCGTTGCCGCACCGTCTGCCGCGCCTGGCGCCACGCCACCTCCACCCGCGACTTCCTC
CTCGCTCACCACGCCCACCAGCCATCCCTCCCCCTCATCTACGGCGAAGACGGCAAC---------------TCCGTAC-
-------TCATCATGCCCTTTAACCACCGGGCAGGGC------------------------CCGTCGCCGCCGACTCC--
-------GTCGCGCGACTTTACAGCGTC---------------GAGCCGTCGACGACGCCCTGTTCCAGGCCTCCCGCGA
CGGCCTCCTCGTCATCTGCGTCCACGGCAA------------GCACTTCTCCATCCGCAACCCGGCGACTCGTCAGTACA
CCA--------ACCTCTCGCTGCTTCATGGCTTCAAGCTCTTGGGGATGTACCAGCACAGCCCTACCGGCGAGTATCGGC
TATTGCTCTACCTGTCCGTGGCCGTGAAGTGGATGTACAGTGCACT---GCCTGAAGTTCAAGAGGGCTCCTACGTCTTC
ACGATAGGCTCCGGCCAGCCGCCCAGGCACATAGGGTGCCCCGACGCGGAGGAACTGATATGCATCCCCGGTTCTGTTCT
GTTCCATGGTGGCCTGCATTGGTATACAAACCACGT------GATAAAGATATTTGACACCACCGCCGAGTCATTCCGGC
AGATGCGCTCTCCGTTTGTTCGTGGCCAC------GCTCGCCTGTTTGAGGTGGAC---AGCATGCTTGGCATGTCCACT
TTTAATGCTGAAGCGACACATGTTTATATCTGGGTGGTGCAAGAGCAAGACTACAAAGATGAGGTCTGGGCATTGAAATA
TCGGGTTGAATTGCCGGTTTCGGAGATCAGGGTGCAATTTGGAATGTTTGAAATTAAATATTGTCGTGTGAGGGCCGAGT
CTTGTGA---GCGTGATGTGCTCGTGCTGCTCGAATTTGATGAT---TGGCTACTTCAAGTCGACATCAATGGCAAGTTG
GTTGCCGGATTCCATCGCAGAGGCCTCATTCGTACTCAAGTCCGGCTCAAACAAACTCTAGTTTTGCACACTTTCTTTAC
GACACTAGAAGATTATGTTGTGAACACTTTGCCTTCCGTTTGACAGCTGTTATGTGAGGTGGTGATTCTAAATTGGCTAA
CTGTCAGTATCCTCGTGAGTTGTAATGGTATGAA-TTGGGTCCACTATGAGCCGGTTAGTTTCATTTTGATGCCTACTAG
TTTTATGATCAAGAAGCTCCGACTGTTTCATGGTTGCATGGAATTTATACTTGTGCGAATATCCTTTTGGGTTGAAGTGG
CTAGCATGTTGGTGCCAAAACTATGAATTCGTTTTGTTAAGCTTTTGAG-------------------------------
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------------ATGGTTGCCAATTGATCTGCCT--CGTCTCTGTTTTCCTCTGAACTGAAGAATTCACTTGGTTTTTTA
-ATCGAGGTTTTCTTCTTTCTTCGAGATCATCCACTGGTTAAAATGTTTAGCCAATATACATTGGTTTCCTGTTTCTAAG
TTCTCTTGTAGCTGATGATGAAATTAGGGCAGGTTCTCCTCTTTGATGACTAGCAAGTTGAACCTCA-TTTTTCGAAGAG
TGTGGAGCATTGCTCGTGAAGCTGCATGATCACATCATAGTCGAG---TTAGTGAAACGTTCTGTTGCAATTCATTCTTC
TCCAAGTATCAATTGCA-TTGCATCTGGTTAGGTGTTCACATGTTCAGTTATAGTTCCGTCTTCTT--------------
-----------TGTCGCTTTGTTTGGGATCATCTGTACTCAGGTTCCAGATTGTTTTCCCCTTCAGATACTGTTACTATC
AGCCATATCTAGTACCGCTGGTAGAAAGCAGGCTGTCTCAAAGATTTGTGTGGCAATAGCCGAAATACATACAGCTGTAA
AAGGGGGTAGTCTGAAAAGTCATTCTGATCATTTGTTACCGCACAGATTATGTGCCATTGCAGGGTAATTG----CTCAC
CCGCTCACATCACTTGCAGGCTATCCACAAT-------------------------------------------------
-----------------------------------CAGTTT---------------------------------------
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>chr3A_531
TCGCTCG-------------------------------------------------------------------------
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----------------------------------------------------------CCCAGCCGGCGACCATGGCGGA
GGCTGCGAGCGCAGAAGAGGCCG---CGCCTCTCCACCCCGGCCTCCCGGATGAGATCTTCATCTGGGAGGTCCTCGTCC
GCCTGCCCCCCAAAGCCCTCCTCCGCTGCCGCGCCGTCTGCCGCGTCTGGCGCCGCGCCACCTCCGCCCGCGACTTCCTC
CTCGCCCACCACGCCTGCCAGCCCGCCCTCCCGCTCCTCTACGTCTACAACATCG---------------AGTCCCTAG-
-------ACATCATCCCCTTCGACCGCCGGGCAGGGG------------------------CCGCGGCCGACGACCAGCT
CCGGCCAGTCGCGCGACTTGGCCAGGGCCCCTTCCGCGCGA-----------------------TC---GCCTCCTGCGA
CGGCCTCCTCGTCTTCGCCATGAGCGACTGC------------CGCTTCTCCCTCTGCAACCCGGCGACTCGTCAGTATG
CTCG--------CCTCCCGGTGCCTCCTGGCTTCGTGCCCTTGGGGATGTACTCGCGCAGCCCAACCGGCGAGTACCGGC
TATTGCTGTACAAGTTCCCCACTGGACCGG------------------CGCCTGACGCTCAAGGTGGCTCCTGCGTGTTG
GTATTAGGCTCCGGCCAGCCGCCACGGTCCATAGGGTGCCCTGATGCTAGGGAACTGGCATTCAGCCT---GTCATTCCT
GTTCCGCGGTGGCCTGCATTGGCACAAAGAGCAGAATGAGAGGATAGTGGTATTCGACACCACCACTGAGTTGTTCCGGC
ACATGCGCGTTCCGGTTGTTTCTCGCTGC------ACTAACCTGTTTGAGATGGAT---GGAATGCTCGGCGTGTCCAGC
TTTAATTATGCAGCGGCAACCATCGATATCTGGATGGCGCAGGA------CTACACGAGCGAGGTCTGGTGCAACAAGTA
CCACATTGAGTTGCCGGTTGCAAAGCTCACCACGCGCTTTGGAAGGTTTAACACA---CATGGGTTTGGGGTAGTCGCTT
CTTCGGA---TGGTCATTTGCTCATGCTGCTCAAATTTAGCGAC---TGGCTACTTCAGGTTGATATGGATGGCAAGTTG
GTCGCTAGTTTCCATTGCAAAGGCCTTGCTTATACTAGATTTTGGCTCAAACAAACTTTAGTTTCGCATACCTTCTTTCC
GGCACTAGAGCGTTATGTTGTGAACGCTAAGCCTT---------------------------------------------
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>chr2A_545
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----------------------------------------------------------------CGGCGACCATGGCGAA
TGCCGCAATGGCAGGAG---CT---CCGCCTCTCCACTGCGGCATCCCGGAAGAAATCGCCATCTGGGAGATCCTCGTCC
GCCTGCCCCCGAAGGCCCTCCTCCGCTGCCGCGCCGTCTGCCGCGCCTGGCGCCGCGCCACCTCCACCCGCGACTTCCTC
CTTGCCCACCACGCCCACCAGCCCTGCCTCCCCCTCGTCTACGACGACTCCCTCTACACCATGACCT-------------
-------------------------ACCGGGCAGGGCTCGTCCCCGCCGACCAGTCCCAGTTCG----------------
--------TCGCGCGACTTGGCAGCGTC---------------GA--------CCTCCCCTGGCTC---GCCTCCTGCGA
CGGCCTCCTCGTCATCTTCGTCCGCGGCGA------------GCACTTCTTCGTCCGCAACCCGGCGACTCGTCAGTCCG
CCA--------ACCTCCCGCTGCTTCATGGCTTCAGGCCTTTGGGGATGTATCGACACAGCCCTACCGGCGAGTACCGAC
TATTGCTCTACCGGTCCCGGAGA------TGGATGTACGGTCCACTTCCACCTGACGTTCAAGAGGGCTCCTACGTCTTC
GCAATAGGCTCCGGCCAGCCGCCGAGGCACATAGGGTGGCATGATGCGGAGAAGCTGATATGCACTGCCGGACCTGTCAT
GTTTGGTGGTAGGCTGCATTGGTACACATGCCACGT------GATAATGATATTTGACAACACCACTGAGTCGTTTCGGC
AGATGCGCTCTCCGTTTGTTCCTGGCCAC------GCTCAACTGTTTGAGATGGAT---AACATGCTTGGCATGTCCGTT
CTTAATGATGAAGGGAAAAGCGTTGATATCTGGGTGGTGCAAGA------CTATGAAGGTGGAGATTGGGCCTTAAAATA
TCGGGTTGAATTGCCGGCTGTAGAGATCAGGGTGCAATTTGGAATGTCTGAAATTAAATATTGGCATGTGAGGGTTGTGT
CTTGTGA---TGGTGATGTGCTTGTGCTGCTCAAATTTGACGAT---TGGCTACTTCAAGTTGACATCAATGGCGAGTTG
GTTGCCGGATTCCATCACAGAGACCTCATTCTTACTCAAGTTCGGCTCAAACAATCACTAGTTTTGCATACTTTCTTTCC
GACACTAGAGGGTTAATTATGTTGGTCCAACAACTCATGAG---------------------------------------
----------------GAGCTGTAATGGTATAAA-TTGGTTCCACTATGAGACGGTTAGTTTCACTTTGATGTATACAAG
TTCTATGATCAAGAAGCTCTGACTCTTTCATGGTTGCATGAAATTTATACTTGTGTGAATATTTTTTGGGGCTGAAGTGT
CTACCATATCGATGCTAAAATAATGAGGCTGTTTTGGTCAG---------------------------------------
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-------------------------------------------------CTTTGAACTGAAGAAATGATTTTGTTTTTTA
-ATCGAGGTT-TCTTCTTTCTTCAAGATCATCCAGTGGTTGAAATGGTTAGCCAACATACATTTGTTT--TGTATCTAAG
TTCTCTTTTAGCTGATGATGAAATTAGGGCAGGTTCTCGTATTAG-----------------------TTTTTGGAAGAA
CTTGGAGCATTGCTCGGTAAATTGCATTGTAGCATTATAGTCAACTTCTCAGTAAAACGTTTTGTTGTGATTCGTTCTTC
TTCATGTATC-----CA-TTGCATCTGTTTACGTGTTGACATGTTCAGTTATACTTTAAAAAAAAATATTGTGCCATAGT
TCTGTCTTCTCTGTTGCATTGTTTGGGATCATCTCTACTCAGGTTCCAGAT--TTTTCCCCTTCAGACA-----------
-GCCACATCTGAAACCACCGGTCGGAATCAGGTTTTCTCAAAGATTTGTGTGGTAATA---------CATACAATTGTAA
AA----GTAGGCTGAAAAGTCATTCTGCTAATTTGTTACTGCACGTATTATGTGCCATTGTAGGGTAATTG----CTCAG
CTGCTAACATCACTTGTAGGCTATACACCCACTTTTCCGTTGTGTGCATGTGCCTTCAGGCATCTGCGTGTAATTGTGTG
TGATAAGTATTCAAAATATTTGGAGTGTGTGGCCACAGTTTACGCTGTCTGGTTAGTTTAACATCTCCAGTGTGCGATAT
GATTATATTAAACCGGCGAAAGGCCTTCATCTTAGA--------------------------------------------
-------------------------------------------
>chr3D_547
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------------------------------------------------------------------GCGCCCATGGCGGA
GGCCGCAAGCGCAGCAG---CAGCGACGCCTCTCCTCCCTGGCCTCCCCGATGACATCTCCATCTGGGAGATCCTCGTCC
GCCTGCCCCCCAAACCCCTCCTCCGCTGTCGCGCCGTCTCCCCCGCCTGGCGCCGCGCCACCTCCGACCGCGACTTCCTC
CTCGCCCACCACGCCCGCCAGCCCTCCCTCCCCCTTCTCTACGGCGACACT---------GACGACCTATTGTCCATGG-
-------AGATCATCACCTGCGACCACCGGCACCGG------GCAGCCGACAAGCTCCAGTCCG----------------
--------TCGCGCGATTTGACGACGCCTCT-----------------------TGCTTCATTCCCGTGGCCTGCTGTGA
CGGCCTCCTCGTCTTACGCACCTATAATCAGAGGGGTGAGAGGCGCCTCTCCATCTGCAACCCGGCCACTCGTCAATATG
CTCC--------CCTCCACCAGCTTCGTGGCTTCAAGCTCTTGGGGATGTATCCACACGGCCCTACCGGCGACTACCGAC
TATTGCTCTGCTTGGAAG---------------------------------CTGATGCTAAAAGTGGCTCCTATGTCTTC
ACATTGGGCTCTGGCCGGCCACCGAGGCGCATAAGGGGCCCTGATGCCAAGGAACTGATGAATTTCCATGGATCTGTTCT
TTTCCATGGCAGCTTGCATTGGCACACTGACAACCT------GATAATGGTATTTGACACCACCACCGAGTCGTTCCGGC
AGATGCGCACTCCGATTGTTTCTGGCCATGTCATTGCTGGCCTGTTTGAGATGGGT---GACATGCTTGGCACGTTCAGC
CTTAATGACGAAGAGACCATTGTTGATATCTGGGTGATGC------AGGACTATCAAGGCCAAGTCTGGGCCTCCAAAGG
CCGGGTTGAATTTCCCATTGAAGAGCTCATGGCGCAATCTGAAGATCTTGGTAGT---TGCTGGCTAGTGGAGGCCACAT
ATTGGGA---TGGTGATCTGCTGGTGCTGGCCAAATTTGACAACGGCTCGCTACATCAGGTTGACATTGATGGCAAGTTG
GTTGACAGTCTCGGTCACAGACTCCTCTATCCTACCCCACTTCGGCTGAAACAATCTCTAGTTCCACATACCTTCTTTCC
GGCACTAGAGGGTTATGTTGTCAATGCTTCGTCTTTCATCTGAC------------------------------------
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>chr2D_581
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--------------------CT---CCGCCTCTCCACTGCGGCATCCCGGAAGAGGTCGCCATCTGGGAGATCCTCGTTC
GCCTGGCCCCCAAGGCCCTCCTCCGCTGCCGCGCCGTCTGCCGCGCCTGGCGCCGCGCCACCTCCACCCGCGACTTCCTC
CTCGCTCACCACGCCCACCAGCCATCCCTCGCCCTCATCTACGGCGAAGACGGCAAC---------------TCCGTAC-
-------TCATCATGCCCTTTAACCACCGGGCAGGGC------------------------CCG----------------
--------TCGCGCGACTTTACAGCGTC---------------GA--------CGACGCCCTGTTCCAGGCCTCCTGCGA
CGGCCTCCTCGTCATCTGCGTCCACGGCAA------------GCACTTCTCCATCCGCAACCCGGCGACTCGTCAATACG
CCA--------ACCTCTCGCTGCTTCATGGCTTCAAGCTCTTGGGGATGTACCAGCACAGCCATACCGGCGAGTATCGGC
TATTGCTCTACCTGTCCGTGGCCGTGAAGTGGATGTACAGTGCACT---GCCTCAAGTTCAAGAGGGCTCCTACGTCTTC
ACGATAGGCTCCGGCCAGCCGCCCAGGCACATAGGGTGCTCCGATGCGGAGGAACTGATATGCATCCCCGGATCTGTTTG
TTTCCATGGTGGCCTGCATTGGTATACAAACCACGT------GATAAAGATATTTGACACCACCGCCGAGTCGTTCCGGC
AGATGCGCTCTCCGTTTGTTCGTGGCCAC------GCTCGCCTGTTTGAGGTGGAC---AGCATGCTTGGCATGTCCACT
TTTAATGGTG---------ATGTTGATATCTGGGTGGTGCAAGAGCAAGACTACAAAGACGAGGTCTGGGCATTGAAATA
TCGGGTTGAATTGCCGGTTGCAGAGATCAGAGTGCAATTTGGAATGTTTGAAATTAAATATTGTCGTGCGAGGGCCGAGT
CTTGTGA---GGGTGATGTGCTCGTGCTGCTCGAATTTGATGAT---TGGCTACTTCAAGTTGACATCAATGGCAGGTTG
GTTGCTGGATTCCATCGCAGAGGCCTCATTCGTACTCAAGTCCGGCTCAAACAGACTCTACTTTTGCACACTTTCTTTCC
GACACTATAGGATTATGTTGTGAACGCTTTGCCTTCCGTTTGACAGCTGTTGTGTGAGGTGGTGATTCTAAATTGGCTAA
CTGTCAGTATCCTCGTGAGTTGTAATGGTATGAA-TTGGGTCCACTATGGGCCGGTTAGTTTCATTTTGATGTACTCAAC
TTTTATGATCAAGAAGCTCTGGCTGCTTCATGGTTGCATTATCGGAGTACTTGAGTGAATATCCCTTTGGGATGAAGTGG
CTACCATGTTGATGCTAAAACTATCAAGTTGTTTTGGTACGCTTTTGAAATAGTTGCCAGGGTGTGGACACCCCCCCCCT
TCTCTCTCGCGACCGCGTCGTCCACCCGTGGGCGACCGGCCGCGCGTCGGGCCTCCTCCCTCCAGGCTCCCCCTCCCTTC
TTCCTTCTCGCCGCCGTCGCCGGCGCCCGCGGCCGGCTTGGCCCTGGGGCTGATGGTGGCGGCGGCCTCCTGGCCCTTCC
CCTCCCGGTCGCTCTCCGGCGCGGGCGGAGCGGCTCCGGGGGGTGCATCTAGGCGGCGGCGGTCTGGCATGGCGGCGGGG
CTCCGTGGCGCATGCAGGCGAGCAGTTACAAAGGAAATCTGATGACCTGACCCCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGCCGGCGCCCGCGGCCGGCTTGGCCCTGGGGCTGCTGGTGGCGGCGGCCTCCTGGCC
CTTCCCCTCCCGGTCGCTCTCCGGCGCGGGCGGAGCGGCTCCGGGGGGTGCATCTAGGCGGCGGCGGGGCTCCGTGGCGC
ATGCAGGCGAGCAATCGGGCGGCGGGGCGGCGGGATCTGGCGTCGTCCGCTCGGCCCAGATCTGGGCCCTTCGGGCCCCA
TCTGGGCCTGGGCGGGCCGGCGGCGGGGATGGCTTCGGTGTGGCTTCTGGGAGGCGGGGGAGATGCGACGCGTGGCTGGG
TGCCGGCGTCGCTGCTGCATCGCGGCCGGCGGGGCTTAACGGGCCCGTTTCGGGCCTGGCTGGGCCAGGGGTGACCCGGC
ATGCCCCGCTGCCGCGTCCGGACGGCTACCGCGACGGTGCCGGAGGCACGGGCCTCCCGCACGACGGCGGTGGAGGTGGT
TCCCTCCCGCTCGGCGTCGATGTTGCTGCTCCCGTCGTGGTGAGCTTCTCTCCGGTCCTCTTGGCCTCGTGGTGGTGTTC
GTAGTGAGGCGGCGTGGGTGGCGGCGCTACTGCGTTGGCGCATGGTGATGGACGACGGTTTGACGGTCGGTTCCGTTCGG
TTGGGCGGTTGGGGTTGGACTGCGGGAGAAATCCCTGCCGGCTTCGGCCCCGACGCGGTGACACCTGCGGGTGCCACCAT
TCCTCCCTGGAGGGTGTCGGTGGTATCCACCCCCCACCTCCCTCCGCGTGCCCGGGGAAACCTGAGGACTCGTCCGGGCA
GCAGCGTCGTCGGCGTCGCATCCCTTCTTGGAGGTGCTGCTTGGTACGCGGCGGATCGGAGCCTCGGTCTATGGTGTTTT
GTTTCCGGTGGGCGCCGCGGTGGCGGGTCATCCGCGCTTTGCCAAGCTGCCGTGGTTGGCATTTGTTTCTTCTTCTTTTT
CTCTTGGTGTGTTGTGCTGCTCGCCACAGCGTTATCTGTACTTGGTGTTGGTTGCTTTGGAATACAAAGCGGGGGAAACC
CTTTTTCGGTAAATAGTTGCCAGTTGTTCTGCCTCGTGTCTCTGTTTTCCTTTGAACTGAAGAATTGACTTTGTTTTTTT
TATCGAGATTTTCGTCTTTGTTCGAGATCATCCAGTGGTTAAAATGTTTAGCCAGTATACATCGGTTTCCTGTTTCTAAG
TTCTCTTATAGCTGATGTTGAAATTGCAGC--GTTCTCCTCTTTGATGACTAGCAAGTTGAACTGCAGTTTTGGAA----
----GAACATTGCTCGTCAAATTGCATGATAGCATTATAGTCGACTTCTCAGTGAAAGGTTCTGTTGCAATTCATTCTTT
TTGAAGTATC-----CATTTGCATCTGTTTAGTTGTTGACACGTTC----------------------------------
------TTCTCTGTTTCATTGTTTGGGATCATCCGTGCTCAGGTTCCAGATTGTGTTCCCCTTGG------GTAACTGTC
AGCCACATGTGGAACCACTGGTCGAAAGCAGGTTGTCTCAAAGATTTGTGTGGCAATA---------CATACAATTGTAA
AA----GTAGGCTGAAAAGTCGTTCTGATCAT----------ACGTACAATGTGCCATTGTAGGGTAATTAATTACTTAG
CTGCTCACATCACTTGTAGGCTACCCAC----------------------------------------------------
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>chr3D_670
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--------------------------------GCCGTCTGCCCCGCGTGGCGCCGTGCCACCTCCGCCCGCGACTTCCTC
CTCGCCCACCACGCCCGCCAGCCCGTCCTTCCACTCCTCTACGGCTACAACTTCGTCGGCGATGACATCGAGTCCCTGT-
-------GCATCGTCCCTTTCGACCACCGGGCAGGGGTCGCCGCCGCCGACCAGTTCCATTCCG----------------
--------TCGCTCGGCTTGCACACGACTCCTCCCGTCTTGATGA--------CTGCTTCCTTCTCGAGGCATGCTGCGA
CGGCCACCTTGCCCTTTCTGCCCACTACCCGCCGAAG---------CTCTCCATCTGCAACCCGGCAACTCGTCAGTTTG
CACC--------CCTCCCGCAGCTTGATGGCTTCATGCTCCTGGGGATGTACCCTCACCCCCCTACTGGCGAGTACCGAC
TACTGCTATACCTGCTCCCCACGGATCTGG------------------CACCGGAAGCTCACGATGGCTCCTACGTCTTC
ACATTGGGCTCCGGCCAGCCGCCCAGGCACATAGGGTGCCCTGAATCCAAGCAATTGAGACACTCCCCTGAGTCTGTCCT
GTTCCGTGGTAGCCTGCATTGGTGCATAGGCAATCT------GATGATGGCATTTGACACCATCGCTGAGTCGTTCCGGC
AGGTGCGCTCTCCGGTTGGTCCTGGCTAC------TCTCACCTGATTGAGATGGGT---GACATGCTTGGCATCTCCAGT
CATAGTGACGCAGCAGCAAGCGTTAATATCTGGGTGATGC------AGGACTACGAAGGCGAGGTCTGAACCTTCAAATA
CCGGGTTGAGCTGCTGGTCGCAGAGATCAAGGAGCAATTTGGAAAGTCTGTTGAT---TATTGGGATGTGGTGGCCGTGC
CTTGGGA---TGATGATGTGCTCCTACTGGTCAAATTTGATGAC---TGTCTGCTTCAGGTTGACATTCTTGGCAAATTG
GTTGCCGGTTTCCATCGCAGAGGCCTTGGCCCTACAAATCTTCGGATCAAGCAAACTCTTGTTCAACATGCCTTCTTTCC
GACACTAGAGGGTTATGTTGTGAATTCTTCGCCTTTCGTCTGATAGTCGA---------TTGTGGTTCTGAACAGCCCAG
CTGTCAGTACTCTCATGAGCTGCAATATGTATGCCTTGGGTCCACTATGAGCCGATTAGTTTCATTTTGATGTATGCAAA
A-CTATGATCAAGAAGTCATAACCTTTTCATGGTTTCATGAAATTTGTACTTGTGTGAATATCCTTTTGGGTTGGAGTGG
CTGTCATG------------------------------------------------------------------------
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>chr3D_977
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----------------------CTTGATGGCTTTAGCTTCTTGGGGATGTATCCACACAGCCCTACCGACGAGTACCGAC
TATTGCTGCACCTGGCCCCGAGGTTCAAGGA---------------------TGATGCTCAAAGTGGCTCCTACGTTTTC
ACATTAGGCTCCGACCAACCGCCGAGGCACGTAGGGTGCCCTGATGCCAAGGAACTGCTGCATTCCCCCAGATCTGTCCT
TTTCCATGGTAGCCTGCATTGGCACACAGAGCGGCT------GATAATGGTATTTGACACCATCTCAGAGTCGTTCCAGC
AGATGCGCTCCCCAATTGTTCCTGACCATGTCATTGGCGACCTGTTTGAGATGAGT---GACATGCTTGGCATGTTCAGT
CTTAATGCCGAAGAGACAATTGTTGATATCTGGGTGATGC------TGGACTATGAGAGCCAAGTTTGGGCCTCCAAAGG
CCGGGTTGAGTTGCCGCTTTCAGGGATTAGGTTGCAATTAGAAAAGTTTGGCACT---TGGTTGGATCTGGTGACCGCAT
CTTGGAACGGTGACGACGTGCTCATGCTGGTCAAATTTGAAGACGACTCGCTACTTCAGATTGACATTGATGGCAAGTTG
GTTGCTAGTCTCCATTGCCAATTCCTCTGTCCTACTCGACTTCGCCTCAAACAGTCTCTAGTTTCACATACCTTCTTTCC
GACACTAGAGGGTTATGTTGTGAATGCTTCACCTTTCGTTTGACCAGACGATTATGT-----------------------
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>SNPs
-S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SS-----------S-SSS-------S--SS------
---SS--SSSSSSSSSS-----S--------S----------------S------------S-S----------------
---S-------------SSS------------------------------------------------------------
----------------------------------------------S---------------------------------
-------------S-----------------------------------------------------------------S
SSSSSSS-------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
S---SSSSSSS------------------------S--------------------------------------------
---------S--------------------------------------------S-------------------------
-----------------------------------S--------------------------------------------
----S----------------------S----------------------------------------------------
--------------------------------------------------------SSS---------------------
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S-------------------S----------------------S------------------------------S-----
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----------SS-------------------------------------------------------S-----S------
------------------------------------------------------------------------------S-
---------------S-------S----------------S-----S---------------------------------
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------------S-------------------------------------------------------------------
----------------------S--S-----S-------------------S----S-----------------------
-----------------------------------S-------------------------------S------------
------------S-------------------------------------------------------------S-----
--------------------------------------------------------------------------------
--------S---S-----------------------------------S----------------S------------S-
S--------S----------------------------S----------------S------------------------
------------------S----------------S--------------------------------------------
----S--------S----S-SSSS--------------------------------------------------------
-------------------------------------------S----SSSS---S------------------------
--------S----S-S---S-S-S-S----S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_529
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-----------------------------CTACCACAACCGCAAGTCCT-------------------------------
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>reverse_1999
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------------------------------------------------------------------------------AG
CTAGCATGTTGGTGCGAA--------------------------------------------------------------
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-------------------------------------------
