Multiple sequence alignment - TraesCS2B01G105900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G105900 chr2B 100.000 2603 0 0 1 2603 66719481 66716879 0.000000e+00 4807
1 TraesCS2B01G105900 chr2B 81.742 356 45 10 20 370 67132077 67131737 1.970000e-71 279
2 TraesCS2B01G105900 chr2D 90.503 2664 138 54 1 2603 38185646 38183037 0.000000e+00 3411
3 TraesCS2B01G105900 chr2D 80.106 377 57 10 1 370 38259441 38259076 5.520000e-67 265
4 TraesCS2B01G105900 chr2D 90.226 133 12 1 2470 2601 38129082 38128950 3.440000e-39 172
5 TraesCS2B01G105900 chr2A 90.189 1162 66 25 562 1697 43180966 43179827 0.000000e+00 1471
6 TraesCS2B01G105900 chr2A 92.405 790 43 8 1831 2603 43178843 43178054 0.000000e+00 1110
7 TraesCS2B01G105900 chr2A 90.328 579 29 11 1 556 43181716 43181142 0.000000e+00 734
8 TraesCS2B01G105900 chr2A 90.980 510 28 8 1587 2090 43163001 43162504 0.000000e+00 671
9 TraesCS2B01G105900 chr2A 93.750 96 2 1 1732 1827 43179827 43179736 9.710000e-30 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G105900 chr2B 66716879 66719481 2602 True 4807 4807 100.000 1 2603 1 chr2B.!!$R1 2602
1 TraesCS2B01G105900 chr2D 38183037 38185646 2609 True 3411 3411 90.503 1 2603 1 chr2D.!!$R2 2602
2 TraesCS2B01G105900 chr2A 43178054 43181716 3662 True 864 1471 91.668 1 2603 4 chr2A.!!$R2 2602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
624 821 0.17576 TAGCACATTGGAGAGCCGTC 59.824 55.0 0.0 0.0 36.79 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1618 1838 1.068417 CGAACGGTGGGACTGACAA 59.932 57.895 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 86 5.781210 TTTGACTTGAATGCACATTACCA 57.219 34.783 0.00 0.00 0.00 3.25
109 111 6.738832 TCTGCAAGAAGAGATGATTTTGAG 57.261 37.500 0.00 0.00 42.31 3.02
192 196 2.224426 TGCACACACGGAAAGTCCTTAT 60.224 45.455 0.00 0.00 33.30 1.73
249 253 7.726216 ACCAGTAATTAGTTATAACGGTACCC 58.274 38.462 6.25 0.00 0.00 3.69
276 280 1.830477 ACAGTGAGCATTCCTCCTCTC 59.170 52.381 0.00 0.00 39.98 3.20
342 346 9.264782 CAAATTCACTTGTTTTTGTTGTTGATC 57.735 29.630 0.00 0.00 0.00 2.92
361 365 3.120321 TCGATGCCTACACACTTTTGT 57.880 42.857 0.00 0.00 35.84 2.83
402 406 6.603201 TCCTGGTCAATCCAATCTAAATCAAC 59.397 38.462 0.00 0.00 46.59 3.18
414 418 7.865385 CCAATCTAAATCAACGAGGAAAACAAA 59.135 33.333 0.00 0.00 0.00 2.83
416 420 9.463443 AATCTAAATCAACGAGGAAAACAAAAG 57.537 29.630 0.00 0.00 0.00 2.27
418 422 8.126700 TCTAAATCAACGAGGAAAACAAAAGAC 58.873 33.333 0.00 0.00 0.00 3.01
420 424 5.828299 TCAACGAGGAAAACAAAAGACAT 57.172 34.783 0.00 0.00 0.00 3.06
436 442 9.468532 ACAAAAGACATTTTTAGCTCTCAAATC 57.531 29.630 0.00 0.00 36.47 2.17
501 511 3.614092 TGAGAATTGCCCATCTGAACTC 58.386 45.455 0.00 0.00 0.00 3.01
502 512 2.611292 GAGAATTGCCCATCTGAACTCG 59.389 50.000 0.00 0.00 0.00 4.18
503 513 1.672881 GAATTGCCCATCTGAACTCGG 59.327 52.381 0.00 0.00 0.00 4.63
504 514 0.911769 ATTGCCCATCTGAACTCGGA 59.088 50.000 0.00 0.00 35.43 4.55
505 515 0.690192 TTGCCCATCTGAACTCGGAA 59.310 50.000 0.00 0.00 34.49 4.30
527 552 3.857038 TCCAACCTATCCGCGGCC 61.857 66.667 23.51 0.00 0.00 6.13
549 574 5.597806 CCACAATCAGAAATTCATCATGGG 58.402 41.667 0.00 0.00 0.00 4.00
552 577 7.014905 CCACAATCAGAAATTCATCATGGGTAT 59.985 37.037 0.00 0.00 0.00 2.73
556 581 7.728847 TCAGAAATTCATCATGGGTATTACG 57.271 36.000 0.00 0.00 0.00 3.18
623 820 0.613260 TTAGCACATTGGAGAGCCGT 59.387 50.000 0.00 0.00 36.79 5.68
624 821 0.175760 TAGCACATTGGAGAGCCGTC 59.824 55.000 0.00 0.00 36.79 4.79
682 879 3.506067 ACCCTGAAATTCAACGGTTCATC 59.494 43.478 8.20 0.00 27.91 2.92
683 880 3.758554 CCCTGAAATTCAACGGTTCATCT 59.241 43.478 0.00 0.00 31.21 2.90
710 911 5.951148 TGAATTTTATGATTCCAGCCACTCA 59.049 36.000 0.00 0.00 35.61 3.41
714 915 2.704464 TGATTCCAGCCACTCATGAG 57.296 50.000 21.37 21.37 0.00 2.90
715 916 1.211212 TGATTCCAGCCACTCATGAGG 59.789 52.381 26.08 11.99 0.00 3.86
716 917 1.487976 GATTCCAGCCACTCATGAGGA 59.512 52.381 26.08 11.14 0.00 3.71
717 918 0.615331 TTCCAGCCACTCATGAGGAC 59.385 55.000 26.08 14.58 0.00 3.85
719 920 0.325933 CCAGCCACTCATGAGGACAA 59.674 55.000 26.08 0.00 0.00 3.18
720 921 1.064906 CCAGCCACTCATGAGGACAAT 60.065 52.381 26.08 2.09 0.00 2.71
721 922 2.171237 CCAGCCACTCATGAGGACAATA 59.829 50.000 26.08 0.00 0.00 1.90
722 923 3.370846 CCAGCCACTCATGAGGACAATAA 60.371 47.826 26.08 0.00 0.00 1.40
723 924 4.264253 CAGCCACTCATGAGGACAATAAA 58.736 43.478 26.08 0.00 0.00 1.40
724 925 4.885907 CAGCCACTCATGAGGACAATAAAT 59.114 41.667 26.08 0.00 0.00 1.40
725 926 4.885907 AGCCACTCATGAGGACAATAAATG 59.114 41.667 26.08 11.70 0.00 2.32
782 987 1.268539 GCACGTGTGGAAAACTGGAAG 60.269 52.381 18.38 0.00 42.29 3.46
849 1054 3.181476 CCTTTGAACCAACCAAACTCCTG 60.181 47.826 0.00 0.00 31.13 3.86
869 1079 4.467795 CCTGTCACCTTCTTAGATCCTTCA 59.532 45.833 0.00 0.00 0.00 3.02
870 1080 5.395103 CCTGTCACCTTCTTAGATCCTTCAG 60.395 48.000 0.00 0.00 0.00 3.02
917 1129 2.903784 ACGCACCCAGGAGCATATATAA 59.096 45.455 6.91 0.00 0.00 0.98
918 1130 3.055819 ACGCACCCAGGAGCATATATAAG 60.056 47.826 6.91 0.00 0.00 1.73
922 1135 3.264450 ACCCAGGAGCATATATAAGCACC 59.736 47.826 15.92 15.92 41.10 5.01
927 1140 4.846367 AGGAGCATATATAAGCACCCAGAA 59.154 41.667 18.88 0.00 41.63 3.02
973 1189 5.692115 TCCTAATCCACTACATCAAGCAA 57.308 39.130 0.00 0.00 0.00 3.91
985 1205 2.248280 TCAAGCAACGTTAGCCTCAA 57.752 45.000 15.85 1.68 0.00 3.02
1001 1221 1.163420 TCAACTTTCACGCACGCCAT 61.163 50.000 0.00 0.00 0.00 4.40
1600 1820 9.920946 TGGAGCTTAATTTAATACTCCTTGATT 57.079 29.630 24.57 0.00 39.66 2.57
1618 1838 6.820656 CCTTGATTGATTACTTGTGCTAGACT 59.179 38.462 0.00 0.00 0.00 3.24
1636 1856 0.944311 CTTGTCAGTCCCACCGTTCG 60.944 60.000 0.00 0.00 0.00 3.95
1640 1860 1.068417 CAGTCCCACCGTTCGTTCA 59.932 57.895 0.00 0.00 0.00 3.18
1702 1922 0.514691 CACTTGAGAGCTCCGTTTGC 59.485 55.000 10.93 0.00 0.00 3.68
1710 1930 0.249398 AGCTCCGTTTGCGATTACCT 59.751 50.000 0.00 0.00 41.33 3.08
1723 1943 5.483811 TGCGATTACCTCTTGATTTGTACA 58.516 37.500 0.00 0.00 0.00 2.90
1725 1945 5.581085 GCGATTACCTCTTGATTTGTACAGT 59.419 40.000 0.00 0.00 0.00 3.55
1730 1950 9.823647 ATTACCTCTTGATTTGTACAGTATCTG 57.176 33.333 16.41 11.37 37.52 2.90
1739 1959 6.968131 TTTGTACAGTATCTGCTGATTCAC 57.032 37.500 11.65 5.00 39.62 3.18
1793 2013 6.728089 TGATGCAATAAATTTGGCATAGGA 57.272 33.333 19.93 9.64 46.17 2.94
1794 2014 7.305813 TGATGCAATAAATTTGGCATAGGAT 57.694 32.000 19.93 5.77 46.17 3.24
1795 2015 7.156000 TGATGCAATAAATTTGGCATAGGATG 58.844 34.615 19.93 0.00 46.17 3.51
1812 2032 3.956199 AGGATGCATGGTTGTTCAATAGG 59.044 43.478 2.46 0.00 0.00 2.57
1827 2047 3.193267 TCAATAGGCAAAACAGTGGCATC 59.807 43.478 0.00 0.00 46.15 3.91
1828 2048 2.284754 TAGGCAAAACAGTGGCATCA 57.715 45.000 0.00 0.00 46.15 3.07
1829 2049 1.412079 AGGCAAAACAGTGGCATCAA 58.588 45.000 0.00 0.00 46.15 2.57
1844 2953 6.772716 AGTGGCATCAATTTATCGGAAATAGT 59.227 34.615 0.00 0.00 0.00 2.12
1905 3018 9.334693 GACTTTATGTAAGTTTGAGCAATGAAG 57.665 33.333 0.00 0.00 47.00 3.02
1924 3037 8.900781 CAATGAAGTGTGATCCTTAATCAGAAT 58.099 33.333 0.00 0.00 45.06 2.40
1936 3054 8.908786 TCCTTAATCAGAATGCTTATTACCAG 57.091 34.615 0.00 0.00 34.76 4.00
2115 3238 7.658525 TGTCCAATGGATTAAGCATAATGTT 57.341 32.000 4.81 0.00 32.73 2.71
2117 3240 7.560991 TGTCCAATGGATTAAGCATAATGTTCT 59.439 33.333 4.81 0.00 32.73 3.01
2246 3369 9.862371 CATAGTTGTAGAAGTCTGTTACAGAAT 57.138 33.333 17.25 13.44 42.46 2.40
2255 3378 8.519526 AGAAGTCTGTTACAGAATCTAGTTCAG 58.480 37.037 22.37 0.00 42.46 3.02
2261 3384 6.948886 TGTTACAGAATCTAGTTCAGAGACCT 59.051 38.462 7.50 0.00 39.39 3.85
2320 3451 0.601311 GTAGGGCTTAGCATGCTCCG 60.601 60.000 26.57 17.25 0.00 4.63
2337 3468 5.423886 TGCTCCGATATGTTCATAACACAA 58.576 37.500 0.00 0.00 45.50 3.33
2366 3497 4.644103 AATGGAAGCGGATTCAATTCAG 57.356 40.909 8.39 0.00 36.97 3.02
2428 3559 7.200434 AGAGAATTTGCCTGGTCTAAAGATA 57.800 36.000 0.00 0.00 0.00 1.98
2503 3636 8.635877 AGACGCTTATAGAGACAATTTAACAG 57.364 34.615 0.00 0.00 0.00 3.16
2529 3662 6.398918 GTTGCTAGAGTTCTTCCTATGAACA 58.601 40.000 8.91 0.00 44.30 3.18
2548 3681 5.662208 TGAACATTGGCATTCCCTCATTATT 59.338 36.000 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 86 7.148052 CCTCAAAATCATCTCTTCTTGCAGATT 60.148 37.037 0.00 0.00 0.00 2.40
109 111 5.484173 TCACTGTGATTATTCAATTCGCC 57.516 39.130 6.36 0.00 32.48 5.54
249 253 4.514441 GGAGGAATGCTCACTGTAATGATG 59.486 45.833 3.77 0.00 0.00 3.07
255 259 3.027412 GAGAGGAGGAATGCTCACTGTA 58.973 50.000 3.77 0.00 0.00 2.74
299 303 2.526304 TTGTTGTCCTTCTGTCTCGG 57.474 50.000 0.00 0.00 0.00 4.63
342 346 3.896648 AACAAAAGTGTGTAGGCATCG 57.103 42.857 0.00 0.00 38.27 3.84
402 406 7.435192 AGCTAAAAATGTCTTTTGTTTTCCTCG 59.565 33.333 0.00 0.00 34.81 4.63
414 418 7.522374 GTCGATTTGAGAGCTAAAAATGTCTT 58.478 34.615 5.68 0.00 0.00 3.01
416 420 5.954349 CGTCGATTTGAGAGCTAAAAATGTC 59.046 40.000 5.68 0.00 0.00 3.06
418 422 5.163854 ACCGTCGATTTGAGAGCTAAAAATG 60.164 40.000 5.68 0.90 0.00 2.32
420 424 4.312443 ACCGTCGATTTGAGAGCTAAAAA 58.688 39.130 0.00 0.00 0.00 1.94
476 486 4.789012 TCAGATGGGCAATTCTCAAAAC 57.211 40.909 0.00 0.00 0.00 2.43
480 490 3.614092 GAGTTCAGATGGGCAATTCTCA 58.386 45.455 0.00 0.00 0.00 3.27
481 491 2.611292 CGAGTTCAGATGGGCAATTCTC 59.389 50.000 0.00 0.00 0.00 2.87
486 496 0.690192 TTCCGAGTTCAGATGGGCAA 59.310 50.000 0.00 0.00 0.00 4.52
502 512 3.400255 GCGGATAGGTTGGACTTATTCC 58.600 50.000 0.00 0.00 46.13 3.01
503 513 3.057734 CGCGGATAGGTTGGACTTATTC 58.942 50.000 0.00 0.00 0.00 1.75
504 514 2.224209 CCGCGGATAGGTTGGACTTATT 60.224 50.000 24.07 0.00 0.00 1.40
505 515 1.343465 CCGCGGATAGGTTGGACTTAT 59.657 52.381 24.07 0.00 0.00 1.73
527 552 6.216801 ACCCATGATGAATTTCTGATTGTG 57.783 37.500 0.00 0.00 0.00 3.33
549 574 7.088272 TCATGCACCTATGATGTACGTAATAC 58.912 38.462 0.00 0.00 32.39 1.89
552 577 5.523438 TCATGCACCTATGATGTACGTAA 57.477 39.130 0.00 0.00 32.39 3.18
556 581 6.260714 TGTTGATTCATGCACCTATGATGTAC 59.739 38.462 0.00 0.00 36.97 2.90
623 820 1.299648 CGGAGGAAGGCCAATGTGA 59.700 57.895 5.01 0.00 36.29 3.58
624 821 2.409870 GCGGAGGAAGGCCAATGTG 61.410 63.158 5.01 0.00 36.29 3.21
682 879 8.636213 AGTGGCTGGAATCATAAAATTCAATAG 58.364 33.333 0.00 0.00 37.38 1.73
683 880 8.537728 AGTGGCTGGAATCATAAAATTCAATA 57.462 30.769 0.00 0.00 37.38 1.90
692 889 4.445305 CCTCATGAGTGGCTGGAATCATAA 60.445 45.833 21.11 0.00 31.35 1.90
693 890 3.072038 CCTCATGAGTGGCTGGAATCATA 59.928 47.826 21.11 0.00 31.35 2.15
695 892 1.211212 CCTCATGAGTGGCTGGAATCA 59.789 52.381 21.11 0.00 0.00 2.57
703 904 4.883585 TCATTTATTGTCCTCATGAGTGGC 59.116 41.667 21.11 14.19 0.00 5.01
737 938 4.143835 GCGTGCGTGAAATGTATATCATG 58.856 43.478 0.00 0.00 36.81 3.07
740 941 2.811104 CGCGTGCGTGAAATGTATATC 58.189 47.619 6.00 0.00 34.35 1.63
741 942 1.070843 GCGCGTGCGTGAAATGTATAT 60.071 47.619 16.27 0.00 42.09 0.86
742 943 0.299300 GCGCGTGCGTGAAATGTATA 59.701 50.000 16.27 0.00 42.09 1.47
743 944 1.060308 GCGCGTGCGTGAAATGTAT 59.940 52.632 16.27 0.00 42.09 2.29
744 945 2.472491 GCGCGTGCGTGAAATGTA 59.528 55.556 16.27 0.00 42.09 2.29
764 965 1.021968 GCTTCCAGTTTTCCACACGT 58.978 50.000 0.00 0.00 0.00 4.49
767 968 1.398692 GTGGCTTCCAGTTTTCCACA 58.601 50.000 4.97 0.00 44.79 4.17
768 969 1.609072 GAGTGGCTTCCAGTTTTCCAC 59.391 52.381 1.75 1.75 45.53 4.02
782 987 1.751544 TGCATGCATGAGGAGTGGC 60.752 57.895 30.64 12.50 0.00 5.01
849 1054 5.923733 TCTGAAGGATCTAAGAAGGTGAC 57.076 43.478 0.00 0.00 0.00 3.67
869 1079 7.676338 GCAAGTGTGCGTTTTATATGTGTATCT 60.676 37.037 0.00 0.00 41.93 1.98
870 1080 6.410914 GCAAGTGTGCGTTTTATATGTGTATC 59.589 38.462 0.00 0.00 41.93 2.24
917 1129 0.534412 CTGATCGAGTTCTGGGTGCT 59.466 55.000 0.00 0.00 0.00 4.40
918 1130 0.460987 CCTGATCGAGTTCTGGGTGC 60.461 60.000 4.47 0.00 32.63 5.01
922 1135 0.811915 ACGTCCTGATCGAGTTCTGG 59.188 55.000 5.77 5.77 36.38 3.86
927 1140 2.163815 CTGGTTTACGTCCTGATCGAGT 59.836 50.000 0.00 0.00 0.00 4.18
973 1189 2.132762 CGTGAAAGTTGAGGCTAACGT 58.867 47.619 0.00 0.00 35.73 3.99
985 1205 2.616330 CCATGGCGTGCGTGAAAGT 61.616 57.895 0.00 0.00 0.00 2.66
1001 1221 1.957668 CGTCATCTTCATCATGGCCA 58.042 50.000 8.56 8.56 0.00 5.36
1104 1324 3.044305 GTCACGGTCTGCAGCCAC 61.044 66.667 21.86 11.55 0.00 5.01
1141 1361 3.764466 CCGGAACCTGAGCTCGCT 61.764 66.667 9.64 0.00 0.00 4.93
1372 1592 1.602237 CGTCCCAGTAATGGCACCT 59.398 57.895 2.94 0.00 0.00 4.00
1493 1713 2.825836 CCCACCTTCGCATGCCTC 60.826 66.667 13.15 0.00 0.00 4.70
1494 1714 4.431131 CCCCACCTTCGCATGCCT 62.431 66.667 13.15 0.00 0.00 4.75
1543 1763 3.494336 CAGCCGCCGCTTCTTGAG 61.494 66.667 0.00 0.00 45.55 3.02
1600 1820 6.096673 TGACAAGTCTAGCACAAGTAATCA 57.903 37.500 1.53 0.00 0.00 2.57
1601 1821 6.159988 ACTGACAAGTCTAGCACAAGTAATC 58.840 40.000 1.53 0.00 26.77 1.75
1602 1822 6.102897 ACTGACAAGTCTAGCACAAGTAAT 57.897 37.500 1.53 0.00 26.77 1.89
1603 1823 5.531122 ACTGACAAGTCTAGCACAAGTAA 57.469 39.130 1.53 0.00 26.77 2.24
1618 1838 1.068417 CGAACGGTGGGACTGACAA 59.932 57.895 0.00 0.00 0.00 3.18
1702 1922 8.873215 ATACTGTACAAATCAAGAGGTAATCG 57.127 34.615 0.00 0.00 0.00 3.34
1710 1930 6.935167 TCAGCAGATACTGTACAAATCAAGA 58.065 36.000 16.29 8.17 38.84 3.02
1723 1943 5.046735 AGTCACAAGTGAATCAGCAGATACT 60.047 40.000 4.20 0.00 41.85 2.12
1725 1945 5.411831 AGTCACAAGTGAATCAGCAGATA 57.588 39.130 4.20 0.00 41.85 1.98
1730 1950 4.202050 ACCAAAAGTCACAAGTGAATCAGC 60.202 41.667 4.20 0.00 41.85 4.26
1793 2013 3.098377 TGCCTATTGAACAACCATGCAT 58.902 40.909 0.00 0.00 0.00 3.96
1794 2014 2.523245 TGCCTATTGAACAACCATGCA 58.477 42.857 0.00 0.00 0.00 3.96
1795 2015 3.591196 TTGCCTATTGAACAACCATGC 57.409 42.857 0.00 0.00 0.00 4.06
1796 2016 5.295950 TGTTTTGCCTATTGAACAACCATG 58.704 37.500 0.00 0.00 0.00 3.66
1812 2032 5.220265 CGATAAATTGATGCCACTGTTTTGC 60.220 40.000 0.00 0.00 0.00 3.68
1844 2953 8.897692 TCACTGGGGTATATACTCTCACTTATA 58.102 37.037 12.50 0.00 0.00 0.98
1849 2958 6.722129 AGAATCACTGGGGTATATACTCTCAC 59.278 42.308 12.50 0.00 0.00 3.51
1862 2971 3.710209 AGTCAGAAAGAATCACTGGGG 57.290 47.619 0.00 0.00 33.19 4.96
1905 3018 6.690194 AAGCATTCTGATTAAGGATCACAC 57.310 37.500 0.00 0.00 39.83 3.82
1924 3037 2.108168 ACTCCTCGCTGGTAATAAGCA 58.892 47.619 0.00 0.00 40.86 3.91
2037 3155 7.882271 AGAACATAAGAGAGCTCACTTGATTTT 59.118 33.333 29.66 18.86 0.00 1.82
2115 3238 5.506730 TGATTGTTACATTACCACCCAGA 57.493 39.130 0.00 0.00 0.00 3.86
2117 3240 4.952957 CCATGATTGTTACATTACCACCCA 59.047 41.667 0.00 0.00 0.00 4.51
2232 3355 7.885922 TCTCTGAACTAGATTCTGTAACAGACT 59.114 37.037 0.00 0.00 40.46 3.24
2246 3369 7.721842 CCACTATCATTAGGTCTCTGAACTAGA 59.278 40.741 0.00 0.00 33.12 2.43
2337 3468 4.706476 TGAATCCGCTTCCATTCAAAAGAT 59.294 37.500 0.00 0.00 36.33 2.40
2503 3636 4.406003 TCATAGGAAGAACTCTAGCAACCC 59.594 45.833 0.00 0.00 0.00 4.11
2529 3662 8.731591 ATTTAGAATAATGAGGGAATGCCAAT 57.268 30.769 0.00 0.00 35.15 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.