>input_sequence_74440
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-------------------ATGGCCATGATGAAGATGACGCACGACGACTACGTCCACCTGTGCCTCATGGCGCTCGCCT
CCGTGGCGACCGGCGGCGACCAAGCACAGGCAGCGAAGGGGCAGTGGCTGCAGACCGTGACTGCGGCGGCGCCAGCAGCC
AGCGAGCTCAGGTTCCGGTGCTCCGTCTGCGGCAAGGCGTTCCCGTCTCACCAGGCGCTCGGCGGGCACAAGGCCAGCCA
CCGGAAACGGGCGGCGCTCGTGCTGCCGCTACAAAGCGTTTCGCCGGCGGAGGAGACGGTGGCATCGTCGACGTCGTCTG
GCGTCGGCGGGCACAGGTGCTCCGTGTGCCACCGGAGCTTCGCGACGGGGCAGGCGCTCGGCGGGCACAAGAGGTGCCAT
TACTGGGACGGGCTGTCGGTCTCGCTGACGGCGTCCGCGTCGCGTTCCGGCTCCGGGTCGTCCGTGAGGGATTTCGACCT
CAACCTGACGCCGGTGCCGGAGAAGGCCGCCGGAGGCATGCGAAGGTGGGGAGAGGAGGAGGAGGTGCAGAGCCCCTTGC
CGCTCAAGAAGCGGCGGCTGTCAAGTCCTTCCTTGGAGCTTAATTTAATACTCCTTGAT----TGA--------------
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>chr2B_1_TraesCS2B01G105900
CATTTATGCATACATTAAGC-AAAAAGAATACGAATGCACATTATTGATCTGCAAGAGATAATTTTGACTTGAATGCACA
TTACCAATCTGCAAGAAGAGATGATTTTGAGGCGAATTGAATAATCACAGTGAATCAATCACAATGGAAGACAAATGTAT
GTA--AAGTGTTTATGCACACACGGAAAGTCCTTATTGGTCAAAGATTATTTATTTGTTCGTACATGACCAGTAATTAGT
TATAACGGTACCCATCATTACAGTGAGCATTCCTCCTCTCTTTTTTTTGCAAATATTGATTCCCGAGACAGAAGGACAAC
AAATTCACTTGTTTTTGTTGTTGATCGATGCCTACACACTTTTGTTTTTATTTTCAAAAATCCTGGTCAATCCAATCTAA
ATCAACGAGGAAAACAAAAGACAT-TTTT-AGCTCTCAAATCGACGGTTCGTTTGGTTGGGGACAACACAGACTT----T
TTTTTGTTTTGAGAATTGCCCATCTGAACTCGGAAT---------------AAGTCCAACCTATCCGCGGCCACAATCAG
AAATTCATCATGGGTATTACG-TACA------------------------------------------------------
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-----------------------------------TCATAGGTGCATGAATCAACAGCTAAAGCA--GGCATTTTTATTT
TTAGCACATTGGAGAGCCGTCACATTGGCCTTCCTCCGCCCGTAAATGAGTTTGAAACCCTGAAATTCAACGGTTCATCT
ATTGAATTTTAT----GATTCCAGCCACTCATGAGGACAATAAATGAATAAAATACTCATGATATACATTTCACGCACGC
GCGCACGTG----TGGAAAACTGGAAGCCACTCCTCATGCATGCACGTACCCTTCCGCCCGCCCTCGTGCTCCTTTGAAC
CAACCAAACTCCTG-----TCACCTTCTTAGATCCTTCAG--ATACACATATAAAACGCACACTTGCACGCACCCAGGAG
CATATATAAG-CACCCAGAACTCGATCAGGAC---GTAAACCAGATTCCTAATCCACTACATCAAGCAA----CGTTAGC
CTCAACTTTCACGCACGCCATGGCCATGATGAAGATGACGCACGACGACTACGTCCACCTGTGCCTCATGGCGCTCGCCT
CCGTGGCGACCGGCGGCGACCAAGCACAGGCAGCGAAGGGGCAGTGGCTGCAGACCGTGACTGCGGCGGCGCCAGCAGCC
AGCGAGCTCAGGTTCCGGTGCTCCGTCTGCGGCAAGGCGTTCCCGTCTCACCAGGCGCTCGGCGGGCACAAGGCCAGCCA
CCGGAAACGGGCGGCGCTCGTGCTGCCGCTACAAAGCGTTTCGCCGGCGGAGGAGACGGTGGCATCGTCGACGTCGTCTG
GCGTCGGCGGGCACAGGTGCTCCGTGTGCCACCGGAGCTTCGCGACGGGGCAGGCGCTCGGCGGGCACAAGAGGTGCCAT
TACTGGGACGGGCTGTCGGTCTCGCTGACGGCGTCCGCGTCGCGTTCCGGCTCCGGGTCGTCCGTGAGGGATTTCGACCT
CAACCTGACGCCGGTGCCGGAGAAGGCCGCCGGAGGCATGCGAAGGTGGGGAGAGGAGGAGGAGGTGCAGAGCCCCTTGC
CGCTCAAGAAGCGGCGGCTGTCAAGTCCTTCCTTGGAGCTTAATTTAATACTCCTTGATTGATTACTTGTGCTAGACTTG
TCAGTCCCACCGTTCGTTCATTGTTTATTTCCACTTTTGTTTTTGAGCCTATTGTTTATTTCCACTTGAGAGCTCCGTTT
GCGATTACCTCTTGATTTGTACAGTATCTGCTGATTCACTTGTGACTTTTGGTCAACTGCTAACACATTTGATGCAATAA
ATTTGGCATAGGATGCATGGTTGTTCAATAGGCAAAACAGTGGCATCAA-------------------------------
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----------------------------------------------------------TTTATCGGAAATAGTATAAGTG
AGAGTATATAC----CCCAGTGATTCTTTCTGACTTTATGTAAGTTTGAGCAATGAAGTGTGATCCTTAATCAGAATGCT
TATTACC-----AGCGAGGAGTTTCCTTCAACTCTAGTATCTTTGACGATCAAAGAAGCACAATAAAAGTAAAGATTCAA
CTCTAGTTAAGTTTAATTTCAAAAAACTTATGACAAAATCAAGTGAG-----CTCTCTTATGTTCTGCTCATGAAAGATT
TCCCTGAACATTATGTCCAATGGATTAAGCATAATGTTCTGGGTGGTAATGTAACAATCATGGTCAATGGTCAATTAAGG
CCCTATTTTAAAACACAGAAAGGATTGAGGTAGGGGGACGCCTTCTCACCTAATAGGTAAAACATAGTTGTAGAAGTCTG
TTACAGAATCTAGTTCAGAGACCTAATGATAGTGGTTTAATTAGTGGTGTAAGTGCCATGGATGTAGGGC--------TT
AGCATGCTCCGATATGTTCATAACACAATCTTTTGAATGGAAGCGGATTCAATTCAGAAAGTGCAAACAATTTAAAAGAT
ATCCTCTATTTATTAGAGAATTTGCCTGGTCTAAAGATAATTTTTAATAAAAGTGAATGTGATGCTTTGGAGAAGTTAGA
TCTGATTTAGACGCT--TATAGAGACAATTTAACAGGGTTGCTAGAGTTCTTCCTATGAACATTGGCATTCCCTCATTAT
TCTAAATTAAGAAATGGTGATGA-AATAAAGTAGAAGGTACAGTAGGAACTTGGCA
>chr2D_1
CATTTATGCATACATTAAGCCAAAAAGAATACGAATACACATTATTGATCTGCAAGAGATAATTTTGACTCGAATGCACA
TTACCGATCTGCAAGAAGAGATGATTTTGACGCGAATTGAATAATCACAGTGAATCAATCACAATGGAAGACAAATGTAT
GTAGAGGGTGTTTATGCACACAT-GAAAGTCCTTACTGGTCAAAGATTATTTATTTGTTTGTACATGACCAGTAATTAGT
TATAACGGTACCAATCATCACAGTGAGCATTCCTCCTCTTTTTTTTTGT-AAATATTGATTCTCGAGACAGAAGGACAAC
AAATTCTCTTGTTTTTGTTGTTGATTGATGCCTACACACTTTTGCTTTTACTTTCAAAAATCCTGGTCAATCCAATCTAA
ATCAAGGAGGAAAACAAGAAAGACATTTT-AGCTCTCAAATTGACGGTTCGTTTGGTTGGGGACAACACAGACTT----C
TATTTTTTTATAGAACTGCCCATCTGAACTTCTCTTCATTCAAAGCGGAACAAGTCCAACATATCCGTGGCGACAATCAG
AAATTCATCATGGATACTACTCTACA------------------------------------------------------
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-----------------------------------TCATAGGTGCATGAATCAACAGCTAAAGCAAAGGCATTTTTCTTT
TTAGCACATTGGAGCGCCGCAACATTGGCCTTCCTCCGCCCGTAAATGAGTTTGAAACCCTGAAATTCAACGGTTCATGA
ATTGAATTGCACAGTAGATTCCATCCACTCGTGAATGAAGAT----AATAAAATACTGATATCC----TTTCACGCACGC
GCGCGCGCACGTTTGGAAAACTGGAAACCACTCCTCATGCATGCACGTACCCTTCCGCCCGCCCTCGTGCTCCTTTGAAC
CAACCAAACTCCTCTATCATCACCTTCTTAGATCCTTCGAATATACACATATATAACTCACAATTGCACGCACCCAGGAG
CATATATATAACACGCAGAGCCCGATCAGGACTCAGTAAACCAGATTCCTAATCCACTACATCAAGCAGCTCGCGTTAGC
CACAGCTCTCGCACGCCA-------ATGATGAAGATGACGCACGACGACTACGTCCACCTCTGCCTCATGGCGCTCGCCT
CCGTGGCCACCGGCGGCGACCAAGCACAGGCAGCGGAGGGGCAATGGCTGCATACCGTGACTGCGGCGGCGCCAGCAGCC
TGCGAGCTTCGGTTCCGGTGCTCCGTATGCGGCAAGGCGTTCCCGTCCCACCAGGCGCTCGGCGGGCACAAGGCCAGCCA
CAGGAAACGGGCGGCGCTCGTGCTGCCGCTACAAAGCGTGTCGCCGGCGGAGGAGGCGGTGGCATCGTCGACGTCGTCTG
GCGTCGGCGGGCACAGGTGCTCCGTGTGCCACCGGAGCTTCGCGACGGGGCAGGCGCTCGGCGGACACAAGCGGTGCCAT
TACTGGGACGGGCTGTCGGTGTCGCTGACGGCGTCGGCGTCGGGTTCC------GGGTCGTCCGCGAGGGATTTCGACCT
CAACCTGACGCCGGTGCCGGAGAAGGCCGCCGCCGGCATGCGAAGGTGGGGAGAGGAGGAGGAGGTGCAGAGCCCCTTGC
CGTTCAAGAAGCGGCGGCTGTCAAGTCCTTCCTTGGAGCTTAATTTAATACTCCTTGAT----TAAGTGTGCTAGAGCTG
TCGGTCCCACCGTTCATTC-TTGTTTATTTCCACTTTTGTTTTTGAGCCTATTGTTTATTTCCACTTGAGAGCTCCGTTT
GTGATTACCCCTTGATTTGTACCGCATCTCCTGATTCATTTGTGACTTTTGGTCAACTGCTAACACATTTGATGCAATAA
ATTTGGCACAGG----ATGGTTGTTCAATAGATGATGGTTGGTCAATCTATTTGACTTTATG------------------
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------------TATCCCAGTGATTCTTTCTGACTTTATGTAAGTTTGAGAAATGAAATGTGATCCTTAATCAGAAAGCT
TATTACC-----AACGAGGAGTTTCCTTCAACTCTAGTATCTTTGACGATCAAAGAAGCACAATAAAAGTGAAGATTCAA
CTCTAGCTAAGGTTAATTTCAAAAAACTTATGACGAAATCAAGTGAGCTTGTCTCTCTTATGTTCTGCTCATGAAGGATT
TCCCTGAACATTATGTCCAATGGATTAAGCATAATGTCCAGGGTGGTGATGTAACAATCATGGTTAATGGTCAATTAAAG
CCCTATTTTTAAACACAGAAAGGATTGAGGTAGGGGGACGCCTTCTCACCTAATAGGTAAAACATAGGTGTAGACGTCTG
TTACAGAAGCTAATTCATAGACCAAATGATAGTGGTTTAATTAGTGGTGTAAGTGCCATGGCTGTAGGGCTTAGCAAGTT
AGCATGCTCCAATATGTTCATAACA--GTCTTTTGAATGGAAACGGATTCAATTCATAAAGTGCAAACAGTTTAAAAGAT
ATCCGCTATTTATTAGAGAATTTTCCTGGTCTAAAGATCATTTTTAATAAAAGTGAATGTGATGCTTTGGAGAAGTTAGA
TCTGATTTAGACGCT--TATAGAGACAATTTAACATGGTTGCTAGAGTTCTTTCTATGAACCTTGGCATTCCCTCATTAT
GCTAAATTAAGAAATGGTGATTGGAATAAAGTAGAAGGTACAGTACGAACTGGCA-
>chr2A_1
CATTTATGCATACATTAAGCCAAAAAGGATATGAATGCACATTATTGTTCTGCAAGAGATCATTTTGACTCGAATGCACA
CTACCGATCTGCAAGAAGAGATGATTTTGACGCGAATGGAATAATCACAGCGAATCAATCACAATGGAAGACAAATGTAT
GTAGAAAGTGATTATGCACACACGGAAAGTCCTTACTGGTCAAAGATTATTTATTTGTTCGTACATGACCAGTAATTAGT
TATAACGGTACCAATCATCACAGTGAGCATTCCTCCTCTTTTTC---TGCAAATATTGATTCTCGAGACAGAAGGACAAC
AAATTCACTTGTTTTTGTTGTTGATTGATGCCTACAAACTTTTGCTTTTATTTTC-AAAATCCTGGTCAATCCAATCTAA
ATCAAGGAGGAAAACAAGAAAGACATTTTTAGCTCTCAAATTGACGGTTCGTTTGGTTGGGGACAACACAGACTTCTTCT
TTTTTTTTAACAGAACTGCCCATCTGAACTTCTCTTTATTCA-AGAGGAACACGTCCAACCTATCCGCGGCGACAATCAG
AAATTCATCATGGATACTACTCCCTCCGTCCCAAAATATAAGAACGTTTTTTACATTAGCATAGTATCAAAAATGTTCTT
ATATTTTAGGACAGAGGTAGTACATCATACTCCCTCCGTTCCAAAATAGATGACTCAACTTTGTACTAAGTTTAGTATAA
CGTTGGGTCATCTATTTTGGAACGGAGGGAGTAGGTCATAGGTGCATGAATCAACAGCTAAAGCAAAGGCATTTTTATTT
TCAGCACATTGGAGAGCCGCAACATTGGCCTTCCTCCGCCCGTAAATGAGTTTGAAACCCTGAAATTCAACGGTTCATGA
ATTGAATTGCACAGTAGATTCCATCCACTCGTGAATGAAGAT----AATAAAATACTGATATCC----TTTCACGCACGC
GCGCGCGCACGTGCGGAGAACTGGAAACCACTCCTCATGCATGCACGTACCCTTCCGCCCGCCCTCGTGCTCCTTTGAAC
CAACCAAACTCCTCTATCATCACCTTCTTAGATCCTTCGAATATG--CATATAGAACGCACACTTGCACGCACCCAGGAG
CATATATATAACACGCAGAGCTCCATCAGGACTCAGTAAACCAGATTCCTAATCCACTACATCAATCAGCTAGCGTTAGC
CTCAGCTTGCACGCACGCCACGGCCATGATGAAGATGACGCACGACGACTACGTCCACCTCTGCCTCATGGCGCTCGCCT
CCGTGGCGACCGGCGGCGGCCAAGCGGAAGCAGCGAAGGGGCAATGGTTACAGACTCTACCGGCGACAACAGCAGCGGCC
TGCGAGCTCCGGTTCCGGTGCTCCGTCTGCGGCAAGGCGTTCCCGTCCCACCAGGCGCTCGGCGGGCACAAGGCCAGCCA
CAGGAAACGGGCGGCGCTCGTGCTGCCGCTACAAAGCGTGTCGCCGGCGGAGGAGACGGTGGCATCGTCGACGTCATCTG
GCGTCGGCGGGCACAGGTGCTCCGTGTGCCACCGGAGCTTTGCGACGGGGCAGGCGCTCGGCGGGCACAAGCGGTGCCAC
TACTGGGACGGGCTGTCGGTGTCGCTGACGGCGTCGGCGTCG------GGTTCCGGGTCATCCGCGAGGGATTTCGACCT
CAACCTGACGCCGGTGACGGAGAAGGCCGCCGCCGGCATGCGAAGGTGGGGAGAGGAGGAAGAGGTGCAGAGCCCCTTGC
CGTTCAAGAAGCGGCGGCTGTCAAGTCCTTCCTTGGAGCTTAATTTAATACTCCTTGAT----TAATTGTGCTATACCTG
TCAGTCCCACCGTTCATTC-TTGTTTATTTCCACTTTTGCTTTTGAGCCTATTGTTTATTTCCACTTGAGAGCTCC----
-------------------------------TGATTCATTTGTGACTTTTGGTCAACTGCTAACACATTTGATGCAATAA
ATTTGGCATAGG----ATGGTTGTTCAATAGACAAAACAGTGGCATGTGATGAGAGAGGATTTTCTACCATGCACGGGAC
CTTCCGTGCATGCATCCATCGCATTATTTATTATTGTGTGGGACCTTTTCTATAGTGTTTTTTCTCACCCAACATAGTAC
ATTCACATGCTATTATGTACTGACTAAGTTTCATTCAAATAAAGAGATGCCTAATGCATGTCGAAATAAAAGTTTGATTT
ACATTTTTTTCCATAATTGTGTTTTTTCTGACAAGGTCTTTAAAACAAGACCAATATTTAATATATTTTCAGAAATTATT
TTTTTGACAACTAAATCACAATGCTTCAAACTTTTTCCATACAAATTTATTAATTCCATGTGAAAAAATAATAATGCTTC
ATTGTGTTTTGCAAAAAAAAAATCTAATTGTTTTACTATGGCTCCCCATGTTCCGTTGCATTTCATAATGTTACATTGTG
TGCTCGTGTGTATCAAACTGATTCTTAGTAATCTAAAAGTTAGTAAATATTAATAGATTTTATTGCAAAAAAACTTTGAA
CTTATCTAGAGTTTTAAAAAATATAGCATATTTATGTGTACTTTTATAGTGCTTCACCATGTTTCAGAATTTTAATTTTA
AAATTTATTGAAATATATTCAAAAGTGGTCTCGTTTGAAAGGTCTCGTCGTCAAAAACACAAATATGAAAACGGATCATA
AATTGTTCTTTTGGTTCAAAAGATAAAATAGATTTAAACTTGTGAATAAAATGAAAAAGCATGGGTGGAACAGAGTGCTT
GCATGTGGTGAGAGAAAGATCGAACAAACTGCGAGCAGTATAAATGCATTGTGTCGGATCTCCAAGCAAAAATCAACGGC
GCATGCATGCACGGTACCTCCCGTGCATGGGAGATTAGCTTTTCTCGGCATGTGATCCTTTATCGGAAATAGCATAAATG
AGAGTATATATATATCCCAGTGATTCTTTCTGACTTTATGTAAGTTTGAGCAATGAAATGTGATCCTTAATCAGACAGCT
TATTACCAATGCAACGAGGAGTTTCCTTCAACTCTAGTATCTTTGACGATCAGAGAAGCACTATTAAAGTAAAGATTCAA
CTCTAGTTAAGGTTAATTTCAAAAAACTTATGACGAAATCAAGTAAGCTTATCTCTCTTATGTTCTGCTCATGAAAGATT
TCCCTGAACATTATGTCCAATGGATTAAGCATAATGTCCAGGGTGGTAATGTAACAATCATGGTCAATGGTCAATCAAGG
CCCTATTTTAAAACACAGACATGATTGAGGTAGGGGGACGCCTTCTCACCTAATAGGTAAAACATAGTTGTAGACGTCTG
TTACAGAAGCTAGTTCATAGACCAAATGATAGTGGTTTAATTAGTGGTGTAAGTGCCATGGATGTAGGGC--------TT
AGCATGCTCCAATATGTTCATAACACAGTCTTTTGAATGGAAGCGGATTCAATTCATAAAGTGCAAACAATTTAAAAGAT
ATCCTCTATTTATTAGAGAATTTGCCTTCTCTAAAGATTAATTTTAATAAAAGTGAATGTGATGCTTTGGAGAAGTTGGA
TCTGATTTAGACGTTTATATAGACACAATTTAACATGTTTGTTAGAGTTCTTCCTGTGAACCTTGGCATTCCCTCATTAA
GCTAAATTAAGAAATGATGATTGGAATAAAGTAGAAGGTTCGGCAGGAACTTGGCA
>SNPs
----------------------------------------------------------------------S---------
-----S------------------------S-------------------------------------------------
-----------------------------------S--------------------------------------------
------------S-----S--------------------S----------------------S-----------------
-------------------------S------------------S-----------------------------------
-----S-----------S-S-S-S-----------------S--------------------------------------
-----S---SS----S--------------SSSSS------------------------------------S--------
-------------S--S---S-----------------------------------------------------------
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-------------------SS---------------------------------------------------------SS
--------SS-S-----------S------S---SSSS-SSSSSSS-----------S--SSSSSSSS------------
----S--SS-----------------S-----------------------------------------------------
-------------S------------------------SS-------------S--------------------------
--------SS----S----S------------------------------------------------S-----------
----S---------------S---------------------------------------S-------------------
-------------------------------------------S------------------------------------
S--------S-------------------------------------S--------------------------------
-S-------------------------------------S----------------------------------------
-----------------------------------------------------------------------S--------
--------------------S--------------S------S-------S-------------S---------------
--------------------------------SS----------------------------------------------
--S--------------------------------------------------------SSSS--S-----------S--
---------------S---S------------------------------------------------------------
-S-------S------------S-S----S--------S-----------------------------------------
------------SSSS---------------S--------------SSS-------------------------------
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------------------------------------------------------------------------S----S--
----------S----------------------------------------------S------------------S---
-------------S------------------------------------------------------------------
-----------S----------------------S---------------------------------------------
-------------------------------------S-S----------------------------------------
--------------------------------------------------------------------------S-----
--------S--------S-----S--------------------------------------------------------
----------S----------------S----------------------------S-----------------------
--------------------------------------S-----------------------------------------
-----------------------------------S-------------------------S------------------
S--------------------SS---------------------------------
>forward_821
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-TAGCACATTGGAGAGCCGTC-----------------------------------------------------------
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>reverse_1838
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-----------------------------------------------------------------------------TTG
TCAGTCCCACCGTTCG----------------------------------------------------------------
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