Multiple sequence alignment - TraesCS2B01G087400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G087400 chr2B 100.000 3638 0 0 1 3638 49385467 49381830 0.000000e+00 6719
1 TraesCS2B01G087400 chr2B 79.843 511 67 22 3129 3630 47855469 47855952 1.250000e-89 340
2 TraesCS2B01G087400 chr2B 85.263 190 14 7 23 212 17371535 17371360 2.230000e-42 183
3 TraesCS2B01G087400 chr2D 87.014 1825 167 39 1831 3638 29716905 29718676 0.000000e+00 1993
4 TraesCS2B01G087400 chr2D 87.259 1193 75 42 632 1770 29715633 29716802 0.000000e+00 1290
5 TraesCS2B01G087400 chr2D 82.318 509 60 17 3129 3630 29850800 29851285 7.270000e-112 414
6 TraesCS2B01G087400 chr2D 87.857 280 32 2 2488 2766 301376087 301376365 9.740000e-86 327
7 TraesCS2B01G087400 chr2A 92.382 932 65 3 2185 3110 31912638 31913569 0.000000e+00 1323
8 TraesCS2B01G087400 chr2A 85.996 1114 74 50 642 1712 31910898 31911972 0.000000e+00 1118
9 TraesCS2B01G087400 chr2A 80.488 492 40 21 1706 2155 31912162 31912639 3.500000e-85 326
10 TraesCS2B01G087400 chr2A 92.308 221 13 3 3418 3638 31913915 31914131 9.810000e-81 311
11 TraesCS2B01G087400 chr6A 88.981 363 12 5 182 542 27310108 27309772 1.210000e-114 424
12 TraesCS2B01G087400 chr6A 86.328 256 33 2 2505 2760 41080280 41080027 9.950000e-71 278
13 TraesCS2B01G087400 chr3B 96.983 232 6 1 312 542 362052673 362052904 4.410000e-104 388
14 TraesCS2B01G087400 chr3B 96.121 232 8 1 312 542 362051322 362051553 9.540000e-101 377
15 TraesCS2B01G087400 chr3B 92.366 262 16 1 23 284 362051075 362051332 1.600000e-98 370
16 TraesCS2B01G087400 chr3B 92.366 262 12 1 23 284 362052430 362052683 2.060000e-97 366
17 TraesCS2B01G087400 chr3B 91.228 114 3 6 23 129 409326884 409326771 8.140000e-32 148
18 TraesCS2B01G087400 chr5B 84.195 348 47 6 2419 2761 684017719 684018063 7.530000e-87 331
19 TraesCS2B01G087400 chr7B 85.761 309 39 5 2488 2793 707866702 707867008 4.530000e-84 322
20 TraesCS2B01G087400 chr7B 91.892 111 4 4 23 129 708853269 708853378 2.260000e-32 150
21 TraesCS2B01G087400 chr7B 90.991 111 5 4 23 129 708854815 708854924 1.050000e-30 145
22 TraesCS2B01G087400 chr7B 85.047 107 14 2 1025 1130 240964821 240964926 1.380000e-19 108
23 TraesCS2B01G087400 chr6D 85.978 271 21 9 161 418 466375561 466375827 1.290000e-69 274
24 TraesCS2B01G087400 chr6D 86.555 238 28 3 2505 2742 37467470 37467237 3.600000e-65 259
25 TraesCS2B01G087400 chr6D 89.116 147 10 4 417 560 466376110 466376253 1.040000e-40 178
26 TraesCS2B01G087400 chr6B 91.220 205 10 3 22 225 680881462 680881265 4.630000e-69 272
27 TraesCS2B01G087400 chr6B 91.176 204 10 3 23 225 680879943 680879747 1.660000e-68 270
28 TraesCS2B01G087400 chr5A 81.991 211 24 10 23 226 519536404 519536201 2.250000e-37 167
29 TraesCS2B01G087400 chr5A 80.476 210 27 12 23 225 519525820 519525618 8.140000e-32 148
30 TraesCS2B01G087400 chr1A 93.458 107 7 0 105 211 324379598 324379492 3.760000e-35 159
31 TraesCS2B01G087400 chr1A 81.122 196 18 11 11 189 3548621 3548814 4.900000e-29 139
32 TraesCS2B01G087400 chr1A 89.474 114 6 4 23 130 584583686 584583573 4.900000e-29 139
33 TraesCS2B01G087400 chr7D 90.991 111 3 4 23 129 499889403 499889296 3.790000e-30 143
34 TraesCS2B01G087400 chr7D 86.916 107 12 2 1025 1130 262737990 262737885 6.380000e-23 119
35 TraesCS2B01G087400 chrUn 90.566 106 9 1 390 494 31877140 31877245 4.900000e-29 139
36 TraesCS2B01G087400 chr7A 86.916 107 12 2 1025 1130 285610132 285610027 6.380000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G087400 chr2B 49381830 49385467 3637 True 6719.00 6719 100.0000 1 3638 1 chr2B.!!$R2 3637
1 TraesCS2B01G087400 chr2D 29715633 29718676 3043 False 1641.50 1993 87.1365 632 3638 2 chr2D.!!$F3 3006
2 TraesCS2B01G087400 chr2A 31910898 31914131 3233 False 769.50 1323 87.7935 642 3638 4 chr2A.!!$F1 2996
3 TraesCS2B01G087400 chr3B 362051075 362052904 1829 False 375.25 388 94.4590 23 542 4 chr3B.!!$F1 519
4 TraesCS2B01G087400 chr6D 466375561 466376253 692 False 226.00 274 87.5470 161 560 2 chr6D.!!$F1 399
5 TraesCS2B01G087400 chr6B 680879747 680881462 1715 True 271.00 272 91.1980 22 225 2 chr6B.!!$R1 203

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
590 751 0.036010 AACGGCAGACAGAAGGATGG 60.036 55.000 0.00 0.0 0.0 3.51 F
615 776 0.242825 TTACAGGCTCGTCGGTGAAG 59.757 55.000 0.00 0.0 0.0 3.02 F
1402 2488 0.407528 TGACCCAATTAAGCCTGCCA 59.592 50.000 0.00 0.0 0.0 4.92 F
2151 3497 1.208052 ACCATGTTCATAGACTGCGCT 59.792 47.619 9.73 0.0 0.0 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2054 3400 0.031585 CGCCGTCAAATCCCGATCTA 59.968 55.000 0.00 0.0 0.00 1.98 R
2182 3657 1.005450 AGGTTGTGGTGAACTGTTGGT 59.995 47.619 0.00 0.0 0.00 3.67 R
2236 3711 1.072965 CCCCTTTCAGAAGCTCACTGT 59.927 52.381 16.70 0.0 36.81 3.55 R
2967 4448 3.996150 AATGCTCACTTGTGAACTTGG 57.004 42.857 4.95 0.0 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.290776 CCGGCTCCAATACTGTAGC 57.709 57.895 0.00 0.00 0.00 3.58
19 20 0.753262 CCGGCTCCAATACTGTAGCT 59.247 55.000 0.00 0.00 35.30 3.32
20 21 1.269831 CCGGCTCCAATACTGTAGCTC 60.270 57.143 0.00 0.00 35.30 4.09
57 58 2.946762 GCAGCGCCGTTCTTCTTT 59.053 55.556 2.29 0.00 0.00 2.52
86 87 3.324556 TCTCTCATGAACACACACCATGA 59.675 43.478 0.00 0.00 42.84 3.07
96 97 5.290493 ACACACACCATGAAGAAACTCTA 57.710 39.130 0.00 0.00 0.00 2.43
97 98 5.057149 ACACACACCATGAAGAAACTCTAC 58.943 41.667 0.00 0.00 0.00 2.59
98 99 5.056480 CACACACCATGAAGAAACTCTACA 58.944 41.667 0.00 0.00 0.00 2.74
99 100 5.050091 CACACACCATGAAGAAACTCTACAC 60.050 44.000 0.00 0.00 0.00 2.90
100 101 5.056480 CACACCATGAAGAAACTCTACACA 58.944 41.667 0.00 0.00 0.00 3.72
101 102 5.178252 CACACCATGAAGAAACTCTACACAG 59.822 44.000 0.00 0.00 0.00 3.66
155 158 2.404215 GCTGTTACTTTGCACGAGAGA 58.596 47.619 3.41 0.00 0.00 3.10
174 177 2.989571 AGACCCTTCTCTTTGGTGGAAT 59.010 45.455 0.00 0.00 30.97 3.01
232 237 1.669795 CCGCCTTTTCATTGCTCCAAC 60.670 52.381 0.00 0.00 0.00 3.77
311 348 4.235731 CCATTCCCGGCCACTAAC 57.764 61.111 2.24 0.00 0.00 2.34
313 350 1.029947 CCATTCCCGGCCACTAACAC 61.030 60.000 2.24 0.00 0.00 3.32
317 354 2.740826 CCGGCCACTAACACCACG 60.741 66.667 2.24 0.00 0.00 4.94
318 355 3.419759 CGGCCACTAACACCACGC 61.420 66.667 2.24 0.00 0.00 5.34
319 356 2.281208 GGCCACTAACACCACGCA 60.281 61.111 0.00 0.00 0.00 5.24
320 357 2.613506 GGCCACTAACACCACGCAC 61.614 63.158 0.00 0.00 0.00 5.34
321 358 1.890041 GCCACTAACACCACGCACA 60.890 57.895 0.00 0.00 0.00 4.57
322 359 1.938861 CCACTAACACCACGCACAC 59.061 57.895 0.00 0.00 0.00 3.82
324 361 2.241880 ACTAACACCACGCACACGC 61.242 57.895 0.00 0.00 45.53 5.34
325 362 2.202892 TAACACCACGCACACGCA 60.203 55.556 0.00 0.00 45.53 5.24
326 363 2.424576 CTAACACCACGCACACGCAC 62.425 60.000 0.00 0.00 45.53 5.34
331 368 2.660224 CACGCACACGCACCACTA 60.660 61.111 0.00 0.00 45.53 2.74
332 369 2.107343 ACGCACACGCACCACTAA 59.893 55.556 0.00 0.00 45.53 2.24
333 370 2.241880 ACGCACACGCACCACTAAC 61.242 57.895 0.00 0.00 45.53 2.34
334 371 2.241190 CGCACACGCACCACTAACA 61.241 57.895 0.00 0.00 38.40 2.41
335 372 1.569493 GCACACGCACCACTAACAG 59.431 57.895 0.00 0.00 38.36 3.16
336 373 1.569493 CACACGCACCACTAACAGC 59.431 57.895 0.00 0.00 0.00 4.40
337 374 1.145156 ACACGCACCACTAACAGCA 59.855 52.632 0.00 0.00 0.00 4.41
338 375 0.250295 ACACGCACCACTAACAGCAT 60.250 50.000 0.00 0.00 0.00 3.79
339 376 0.166597 CACGCACCACTAACAGCATG 59.833 55.000 0.00 0.00 46.00 4.06
340 377 1.135315 CGCACCACTAACAGCATGC 59.865 57.895 10.51 10.51 42.53 4.06
341 378 1.576451 CGCACCACTAACAGCATGCA 61.576 55.000 21.98 0.00 42.53 3.96
342 379 0.169672 GCACCACTAACAGCATGCAG 59.830 55.000 21.98 15.38 42.53 4.41
343 380 0.169672 CACCACTAACAGCATGCAGC 59.830 55.000 21.98 0.00 42.53 5.25
357 394 3.414272 CAGCGCTGCCCACTATTC 58.586 61.111 26.68 0.00 0.00 1.75
358 395 2.182842 CAGCGCTGCCCACTATTCC 61.183 63.158 26.68 0.00 0.00 3.01
359 396 2.190578 GCGCTGCCCACTATTCCT 59.809 61.111 0.00 0.00 0.00 3.36
360 397 1.889573 GCGCTGCCCACTATTCCTC 60.890 63.158 0.00 0.00 0.00 3.71
361 398 1.522092 CGCTGCCCACTATTCCTCA 59.478 57.895 0.00 0.00 0.00 3.86
362 399 0.107703 CGCTGCCCACTATTCCTCAA 60.108 55.000 0.00 0.00 0.00 3.02
363 400 1.383523 GCTGCCCACTATTCCTCAAC 58.616 55.000 0.00 0.00 0.00 3.18
364 401 1.656652 CTGCCCACTATTCCTCAACG 58.343 55.000 0.00 0.00 0.00 4.10
365 402 0.251916 TGCCCACTATTCCTCAACGG 59.748 55.000 0.00 0.00 0.00 4.44
366 403 1.095807 GCCCACTATTCCTCAACGGC 61.096 60.000 0.00 0.00 0.00 5.68
367 404 0.463833 CCCACTATTCCTCAACGGCC 60.464 60.000 0.00 0.00 0.00 6.13
368 405 0.810031 CCACTATTCCTCAACGGCCG 60.810 60.000 26.86 26.86 0.00 6.13
369 406 1.153429 ACTATTCCTCAACGGCCGC 60.153 57.895 28.58 0.00 0.00 6.53
370 407 1.153449 CTATTCCTCAACGGCCGCA 60.153 57.895 28.58 8.69 0.00 5.69
371 408 0.532862 CTATTCCTCAACGGCCGCAT 60.533 55.000 28.58 12.52 0.00 4.73
372 409 0.753867 TATTCCTCAACGGCCGCATA 59.246 50.000 28.58 9.66 0.00 3.14
373 410 0.814010 ATTCCTCAACGGCCGCATAC 60.814 55.000 28.58 0.00 0.00 2.39
374 411 2.125310 CCTCAACGGCCGCATACA 60.125 61.111 28.58 3.59 0.00 2.29
375 412 1.743623 CCTCAACGGCCGCATACAA 60.744 57.895 28.58 3.89 0.00 2.41
376 413 1.423845 CTCAACGGCCGCATACAAC 59.576 57.895 28.58 0.00 0.00 3.32
377 414 1.977594 CTCAACGGCCGCATACAACC 61.978 60.000 28.58 0.00 0.00 3.77
378 415 2.748647 AACGGCCGCATACAACCC 60.749 61.111 28.58 0.00 0.00 4.11
384 421 4.823419 CGCATACAACCCGGCCGA 62.823 66.667 30.73 5.29 0.00 5.54
385 422 2.895372 GCATACAACCCGGCCGAG 60.895 66.667 30.73 18.52 0.00 4.63
386 423 2.582436 CATACAACCCGGCCGAGT 59.418 61.111 30.73 19.46 0.00 4.18
387 424 1.520787 CATACAACCCGGCCGAGTC 60.521 63.158 30.73 0.00 0.00 3.36
388 425 2.728435 ATACAACCCGGCCGAGTCC 61.728 63.158 30.73 0.00 0.00 3.85
390 427 4.760047 CAACCCGGCCGAGTCCAG 62.760 72.222 30.73 9.77 0.00 3.86
395 432 4.208686 CGGCCGAGTCCAGCTACC 62.209 72.222 24.07 0.00 0.00 3.18
406 443 1.561076 TCCAGCTACCAACTCATGCAT 59.439 47.619 0.00 0.00 0.00 3.96
477 638 4.895224 TGCATCTCTAGTACTAACGTGG 57.105 45.455 3.76 0.00 0.00 4.94
490 651 4.325304 CGTGGCATGCAACGCACA 62.325 61.111 32.80 11.35 43.04 4.57
499 660 2.892334 GCAACGCACACATCACGGT 61.892 57.895 0.00 0.00 0.00 4.83
542 703 8.498054 ACACATGTCAAGATTAATCCTAACAG 57.502 34.615 11.92 9.46 0.00 3.16
543 704 7.066284 ACACATGTCAAGATTAATCCTAACAGC 59.934 37.037 11.92 0.00 0.00 4.40
547 708 5.463724 GTCAAGATTAATCCTAACAGCTCCG 59.536 44.000 11.92 0.00 0.00 4.63
548 709 5.128827 TCAAGATTAATCCTAACAGCTCCGT 59.871 40.000 11.92 0.00 0.00 4.69
551 712 0.831307 AATCCTAACAGCTCCGTCCC 59.169 55.000 0.00 0.00 0.00 4.46
553 714 0.683504 TCCTAACAGCTCCGTCCCTC 60.684 60.000 0.00 0.00 0.00 4.30
554 715 1.677637 CCTAACAGCTCCGTCCCTCC 61.678 65.000 0.00 0.00 0.00 4.30
555 716 1.677637 CTAACAGCTCCGTCCCTCCC 61.678 65.000 0.00 0.00 0.00 4.30
562 723 4.856801 CCGTCCCTCCCGCCATTG 62.857 72.222 0.00 0.00 0.00 2.82
563 724 4.856801 CGTCCCTCCCGCCATTGG 62.857 72.222 0.00 0.00 0.00 3.16
573 734 4.939399 GCCATTGGCCATTGGAAC 57.061 55.556 38.94 23.90 44.06 3.62
574 735 1.153588 GCCATTGGCCATTGGAACG 60.154 57.895 38.94 19.91 44.06 3.95
581 742 4.395519 CCATTGGAACGGCAGACA 57.604 55.556 0.00 0.00 0.00 3.41
582 743 2.174334 CCATTGGAACGGCAGACAG 58.826 57.895 0.00 0.00 0.00 3.51
583 744 0.321564 CCATTGGAACGGCAGACAGA 60.322 55.000 0.00 0.00 0.00 3.41
584 745 1.522668 CATTGGAACGGCAGACAGAA 58.477 50.000 0.00 0.00 0.00 3.02
585 746 1.466167 CATTGGAACGGCAGACAGAAG 59.534 52.381 0.00 0.00 0.00 2.85
586 747 0.250295 TTGGAACGGCAGACAGAAGG 60.250 55.000 0.00 0.00 0.00 3.46
587 748 1.118965 TGGAACGGCAGACAGAAGGA 61.119 55.000 0.00 0.00 0.00 3.36
588 749 0.250513 GGAACGGCAGACAGAAGGAT 59.749 55.000 0.00 0.00 0.00 3.24
589 750 1.363744 GAACGGCAGACAGAAGGATG 58.636 55.000 0.00 0.00 0.00 3.51
590 751 0.036010 AACGGCAGACAGAAGGATGG 60.036 55.000 0.00 0.00 0.00 3.51
591 752 1.817099 CGGCAGACAGAAGGATGGC 60.817 63.158 0.00 0.00 35.08 4.40
592 753 1.300963 GGCAGACAGAAGGATGGCA 59.699 57.895 0.00 0.00 38.07 4.92
593 754 0.322816 GGCAGACAGAAGGATGGCAA 60.323 55.000 0.00 0.00 38.07 4.52
594 755 1.538047 GCAGACAGAAGGATGGCAAA 58.462 50.000 0.00 0.00 0.00 3.68
595 756 2.097825 GCAGACAGAAGGATGGCAAAT 58.902 47.619 0.00 0.00 0.00 2.32
596 757 2.494870 GCAGACAGAAGGATGGCAAATT 59.505 45.455 0.00 0.00 0.00 1.82
597 758 3.056322 GCAGACAGAAGGATGGCAAATTT 60.056 43.478 0.00 0.00 0.00 1.82
598 759 4.158394 GCAGACAGAAGGATGGCAAATTTA 59.842 41.667 0.00 0.00 0.00 1.40
599 760 5.644644 CAGACAGAAGGATGGCAAATTTAC 58.355 41.667 0.00 0.00 0.00 2.01
600 761 5.183713 CAGACAGAAGGATGGCAAATTTACA 59.816 40.000 0.00 0.00 0.00 2.41
602 763 4.463891 ACAGAAGGATGGCAAATTTACAGG 59.536 41.667 0.00 0.00 0.00 4.00
604 765 3.105959 AGGATGGCAAATTTACAGGCT 57.894 42.857 0.00 0.00 0.00 4.58
605 766 3.026694 AGGATGGCAAATTTACAGGCTC 58.973 45.455 0.00 0.00 0.00 4.70
606 767 2.223572 GGATGGCAAATTTACAGGCTCG 60.224 50.000 0.00 0.00 0.00 5.03
608 769 1.810151 TGGCAAATTTACAGGCTCGTC 59.190 47.619 0.00 0.00 0.00 4.20
609 770 1.202031 GGCAAATTTACAGGCTCGTCG 60.202 52.381 0.00 0.00 0.00 5.12
610 771 1.202031 GCAAATTTACAGGCTCGTCGG 60.202 52.381 0.00 0.00 0.00 4.79
611 772 2.073816 CAAATTTACAGGCTCGTCGGT 58.926 47.619 0.00 0.00 0.00 4.69
612 773 1.722011 AATTTACAGGCTCGTCGGTG 58.278 50.000 0.00 0.00 0.00 4.94
613 774 0.892755 ATTTACAGGCTCGTCGGTGA 59.107 50.000 0.00 0.00 0.00 4.02
614 775 0.675083 TTTACAGGCTCGTCGGTGAA 59.325 50.000 0.00 0.00 0.00 3.18
615 776 0.242825 TTACAGGCTCGTCGGTGAAG 59.757 55.000 0.00 0.00 0.00 3.02
617 778 3.303135 AGGCTCGTCGGTGAAGCA 61.303 61.111 6.07 0.00 0.00 3.91
626 787 4.456806 GGTGAAGCACCGTCAAGT 57.543 55.556 0.22 0.00 44.95 3.16
627 788 2.702847 GGTGAAGCACCGTCAAGTT 58.297 52.632 0.22 0.00 44.95 2.66
628 789 1.021968 GGTGAAGCACCGTCAAGTTT 58.978 50.000 0.22 0.00 44.95 2.66
629 790 2.215196 GGTGAAGCACCGTCAAGTTTA 58.785 47.619 0.22 0.00 44.95 2.01
630 791 2.032290 GGTGAAGCACCGTCAAGTTTAC 60.032 50.000 0.22 0.00 44.95 2.01
631 792 2.610374 GTGAAGCACCGTCAAGTTTACA 59.390 45.455 0.00 0.00 0.00 2.41
632 793 2.869801 TGAAGCACCGTCAAGTTTACAG 59.130 45.455 0.00 0.00 0.00 2.74
633 794 2.614829 AGCACCGTCAAGTTTACAGT 57.385 45.000 0.00 0.00 0.00 3.55
634 795 3.738830 AGCACCGTCAAGTTTACAGTA 57.261 42.857 0.00 0.00 0.00 2.74
635 796 3.650139 AGCACCGTCAAGTTTACAGTAG 58.350 45.455 0.00 0.00 0.00 2.57
636 797 3.069158 AGCACCGTCAAGTTTACAGTAGT 59.931 43.478 0.00 0.00 0.00 2.73
637 798 3.427863 GCACCGTCAAGTTTACAGTAGTC 59.572 47.826 0.00 0.00 0.00 2.59
638 799 3.985925 CACCGTCAAGTTTACAGTAGTCC 59.014 47.826 0.00 0.00 0.00 3.85
639 800 3.006217 ACCGTCAAGTTTACAGTAGTCCC 59.994 47.826 0.00 0.00 0.00 4.46
640 801 3.006110 CCGTCAAGTTTACAGTAGTCCCA 59.994 47.826 0.00 0.00 0.00 4.37
650 811 8.222637 AGTTTACAGTAGTCCCAAAAATACCTT 58.777 33.333 0.00 0.00 0.00 3.50
669 835 3.821033 CCTTGGAGACTTTGTAAACCCAG 59.179 47.826 0.00 0.00 0.00 4.45
672 838 3.181448 TGGAGACTTTGTAAACCCAGACC 60.181 47.826 0.00 0.00 0.00 3.85
707 873 6.117488 AGAAACTAAAACTCGGGTGAAGAAA 58.883 36.000 0.00 0.00 0.00 2.52
712 878 3.277142 AACTCGGGTGAAGAAACTTGT 57.723 42.857 0.00 0.00 0.00 3.16
747 913 1.705337 CTGCCGCCCACTGATTAACG 61.705 60.000 0.00 0.00 0.00 3.18
757 1445 0.859232 CTGATTAACGGCGGGAATCG 59.141 55.000 22.58 16.36 42.76 3.34
851 1657 2.416638 CATTCCATTCCTCCCTCTCCT 58.583 52.381 0.00 0.00 0.00 3.69
875 1697 0.473694 TCCTTCCTTCCTGCTGTCCA 60.474 55.000 0.00 0.00 0.00 4.02
893 1715 0.690762 CACCCTTTTCTTCTCCCCGA 59.309 55.000 0.00 0.00 0.00 5.14
896 1718 1.351350 CCCTTTTCTTCTCCCCGACTT 59.649 52.381 0.00 0.00 0.00 3.01
924 1746 4.166888 GCGCTCCATGCCTCTCCA 62.167 66.667 0.00 0.00 38.78 3.86
925 1747 2.586245 CGCTCCATGCCTCTCCAA 59.414 61.111 0.00 0.00 38.78 3.53
926 1748 1.078214 CGCTCCATGCCTCTCCAAA 60.078 57.895 0.00 0.00 38.78 3.28
928 1750 1.034292 GCTCCATGCCTCTCCAAACC 61.034 60.000 0.00 0.00 35.15 3.27
939 1767 1.072331 TCTCCAAACCAACCAGAGCTC 59.928 52.381 5.27 5.27 0.00 4.09
942 1770 1.479389 CCAAACCAACCAGAGCTCCTT 60.479 52.381 10.93 0.00 0.00 3.36
949 1777 1.140312 ACCAGAGCTCCTTTGTTCCA 58.860 50.000 10.93 0.00 0.00 3.53
955 1802 1.005215 AGCTCCTTTGTTCCATCCAGG 59.995 52.381 0.00 0.00 39.47 4.45
979 1826 4.258702 TCAAGAAAGAGACGGAGAAAGG 57.741 45.455 0.00 0.00 0.00 3.11
1146 2093 0.833287 CGTGAGTTCCTCATCCCCAT 59.167 55.000 0.00 0.00 42.73 4.00
1187 2146 2.472488 ACGTTTTGTAGCTTAACGACGG 59.528 45.455 21.66 5.42 45.36 4.79
1191 2150 1.153958 GTAGCTTAACGACGGCGGT 60.154 57.895 18.49 12.99 43.17 5.68
1195 2154 1.749609 GCTTAACGACGGCGGTGATC 61.750 60.000 14.00 0.00 43.17 2.92
1353 2438 1.069204 TCTTGGTCAGCACTGTCAGAC 59.931 52.381 6.91 0.00 0.00 3.51
1362 2448 2.684881 AGCACTGTCAGACTTGGTTTTG 59.315 45.455 6.91 0.00 0.00 2.44
1386 2472 4.551024 GCTGTTCAGAGTTTCGTTTCTGAC 60.551 45.833 3.84 1.80 46.86 3.51
1390 2476 3.118555 TCAGAGTTTCGTTTCTGACCCAA 60.119 43.478 0.35 0.00 43.51 4.12
1400 2486 2.128771 TCTGACCCAATTAAGCCTGC 57.871 50.000 0.00 0.00 0.00 4.85
1402 2488 0.407528 TGACCCAATTAAGCCTGCCA 59.592 50.000 0.00 0.00 0.00 4.92
1406 2492 1.901833 CCCAATTAAGCCTGCCAAACT 59.098 47.619 0.00 0.00 0.00 2.66
1407 2493 2.354003 CCCAATTAAGCCTGCCAAACTG 60.354 50.000 0.00 0.00 0.00 3.16
1408 2494 2.562298 CCAATTAAGCCTGCCAAACTGA 59.438 45.455 0.00 0.00 0.00 3.41
1409 2495 3.006752 CCAATTAAGCCTGCCAAACTGAA 59.993 43.478 0.00 0.00 0.00 3.02
1410 2496 4.322953 CCAATTAAGCCTGCCAAACTGAAT 60.323 41.667 0.00 0.00 0.00 2.57
1411 2497 5.240121 CAATTAAGCCTGCCAAACTGAATT 58.760 37.500 0.00 0.00 0.00 2.17
1412 2498 4.953940 TTAAGCCTGCCAAACTGAATTT 57.046 36.364 0.00 0.00 0.00 1.82
1413 2499 6.603940 ATTAAGCCTGCCAAACTGAATTTA 57.396 33.333 0.00 0.00 0.00 1.40
1414 2500 4.953940 AAGCCTGCCAAACTGAATTTAA 57.046 36.364 0.00 0.00 0.00 1.52
1415 2501 4.953940 AGCCTGCCAAACTGAATTTAAA 57.046 36.364 0.00 0.00 0.00 1.52
1416 2502 4.631131 AGCCTGCCAAACTGAATTTAAAC 58.369 39.130 0.00 0.00 0.00 2.01
1417 2503 4.100808 AGCCTGCCAAACTGAATTTAAACA 59.899 37.500 0.00 0.00 0.00 2.83
1418 2504 4.996758 GCCTGCCAAACTGAATTTAAACAT 59.003 37.500 0.00 0.00 0.00 2.71
1419 2505 5.106987 GCCTGCCAAACTGAATTTAAACATG 60.107 40.000 0.00 0.00 0.00 3.21
1420 2506 6.222389 CCTGCCAAACTGAATTTAAACATGA 58.778 36.000 0.00 0.00 0.00 3.07
1557 2659 2.352805 GTTCCTGGCAGGAGGGTG 59.647 66.667 33.14 8.09 46.73 4.61
1569 2671 3.341823 CAGGAGGGTGAGTTCATGAAAG 58.658 50.000 10.35 0.00 0.00 2.62
1638 2744 7.445402 AGTTCATTACCATAGCAACCATGTATC 59.555 37.037 0.00 0.00 0.00 2.24
1696 2802 3.217626 GCCAGATGCTAAGCAAGGTAAT 58.782 45.455 0.00 0.00 43.62 1.89
1770 3070 3.928375 GTGAATGAAATGTGGGATGCAAC 59.072 43.478 0.00 0.00 0.00 4.17
1771 3071 3.055963 TGAATGAAATGTGGGATGCAACC 60.056 43.478 4.00 4.00 0.00 3.77
1815 3133 4.229876 GCGCTTGAATTAGAGTTTGCTTT 58.770 39.130 0.00 0.00 0.00 3.51
1816 3134 4.322009 GCGCTTGAATTAGAGTTTGCTTTC 59.678 41.667 0.00 0.00 0.00 2.62
1817 3135 5.451908 CGCTTGAATTAGAGTTTGCTTTCA 58.548 37.500 0.00 0.00 0.00 2.69
1825 3147 4.889832 AGAGTTTGCTTTCAACAGTCAG 57.110 40.909 0.00 0.00 30.75 3.51
1959 3302 4.945246 TCTGGTAATATCTCAACGCCTTC 58.055 43.478 0.00 0.00 0.00 3.46
1966 3309 3.813529 ATCTCAACGCCTTCTTTTTCG 57.186 42.857 0.00 0.00 0.00 3.46
1967 3310 2.557317 TCTCAACGCCTTCTTTTTCGT 58.443 42.857 0.00 0.00 36.67 3.85
1968 3311 3.719924 TCTCAACGCCTTCTTTTTCGTA 58.280 40.909 0.00 0.00 34.50 3.43
1969 3312 4.312443 TCTCAACGCCTTCTTTTTCGTAT 58.688 39.130 0.00 0.00 34.50 3.06
1970 3313 4.753107 TCTCAACGCCTTCTTTTTCGTATT 59.247 37.500 0.00 0.00 34.50 1.89
1971 3314 5.025986 TCAACGCCTTCTTTTTCGTATTC 57.974 39.130 0.00 0.00 34.50 1.75
1973 3316 4.663636 ACGCCTTCTTTTTCGTATTCAG 57.336 40.909 0.00 0.00 33.02 3.02
1977 3320 5.960105 CGCCTTCTTTTTCGTATTCAGATTC 59.040 40.000 0.00 0.00 0.00 2.52
1981 3324 8.887717 CCTTCTTTTTCGTATTCAGATTCAGAT 58.112 33.333 0.00 0.00 0.00 2.90
1982 3325 9.913451 CTTCTTTTTCGTATTCAGATTCAGATC 57.087 33.333 0.00 0.00 0.00 2.75
1984 3327 9.091784 TCTTTTTCGTATTCAGATTCAGATCAG 57.908 33.333 0.00 0.00 34.60 2.90
1992 3335 9.107177 GTATTCAGATTCAGATCAGTGTTCATT 57.893 33.333 4.09 0.00 34.60 2.57
1994 3337 9.676861 ATTCAGATTCAGATCAGTGTTCATTAA 57.323 29.630 4.09 0.00 34.60 1.40
2026 3372 9.926158 ATTCATATTCTTGTTTTGCAATGTACA 57.074 25.926 0.00 0.00 36.36 2.90
2027 3373 9.926158 TTCATATTCTTGTTTTGCAATGTACAT 57.074 25.926 1.41 1.41 36.36 2.29
2028 3374 9.926158 TCATATTCTTGTTTTGCAATGTACATT 57.074 25.926 15.47 15.47 36.36 2.71
2054 3400 2.732619 GGGGAAAGCTCGTCCGGAT 61.733 63.158 7.81 0.00 35.86 4.18
2072 3418 2.338500 GATAGATCGGGATTTGACGGC 58.662 52.381 0.00 0.00 0.00 5.68
2115 3461 4.340097 TCAAGTTCGACAACTCCTACTTCA 59.660 41.667 0.00 0.00 42.45 3.02
2119 3465 4.174411 TCGACAACTCCTACTTCATGTG 57.826 45.455 0.00 0.00 0.00 3.21
2124 3470 3.601443 ACTCCTACTTCATGTGAGCAC 57.399 47.619 0.00 0.00 0.00 4.40
2128 3474 4.507710 TCCTACTTCATGTGAGCACAATC 58.492 43.478 7.46 0.00 45.41 2.67
2131 3477 6.051074 CCTACTTCATGTGAGCACAATCATA 58.949 40.000 7.46 0.00 45.41 2.15
2145 3491 6.484643 AGCACAATCATACCATGTTCATAGAC 59.515 38.462 0.00 0.00 0.00 2.59
2151 3497 1.208052 ACCATGTTCATAGACTGCGCT 59.792 47.619 9.73 0.00 0.00 5.92
2171 3646 7.309177 TGCGCTTCAGCTTATAACATTTTAAA 58.691 30.769 9.73 0.00 39.32 1.52
2173 3648 9.445786 GCGCTTCAGCTTATAACATTTTAAATA 57.554 29.630 0.00 0.00 39.32 1.40
2213 3688 2.951642 CACCACAACCTTGTCATCACTT 59.048 45.455 0.00 0.00 39.91 3.16
2236 3711 4.578928 TGACTTCGTCTGCTGTATATGCTA 59.421 41.667 0.00 0.00 33.15 3.49
2303 3778 1.341531 ACAGACAAGGTTCTCGTGGAG 59.658 52.381 0.00 0.00 0.00 3.86
2306 3781 0.680061 ACAAGGTTCTCGTGGAGGAC 59.320 55.000 0.00 0.00 37.44 3.85
2353 3828 8.447833 TGAATTATACGCAAAGGTAAAACAGAG 58.552 33.333 0.00 0.00 0.00 3.35
2358 3833 4.035208 ACGCAAAGGTAAAACAGAGTTCAG 59.965 41.667 0.00 0.00 0.00 3.02
2361 3836 6.238266 CGCAAAGGTAAAACAGAGTTCAGTTA 60.238 38.462 0.00 0.00 0.00 2.24
2377 3852 9.267084 GAGTTCAGTTAAGAATATCTCCAATCC 57.733 37.037 0.00 0.00 0.00 3.01
2639 4115 1.222113 GGAGGCTCAGTGGTTAGGC 59.778 63.158 17.69 0.00 38.50 3.93
2658 4134 2.936928 TGCAAGTCTCCATGTGCAG 58.063 52.632 2.55 0.00 41.85 4.41
2666 4142 3.771479 AGTCTCCATGTGCAGATAACTGA 59.229 43.478 3.85 0.00 46.03 3.41
2672 4148 6.855836 TCCATGTGCAGATAACTGAAAATTC 58.144 36.000 3.85 0.00 46.03 2.17
2691 4167 3.685139 TCAGTGATGGGTTCTGAAGAC 57.315 47.619 0.00 0.00 35.65 3.01
2704 4180 6.490381 GGGTTCTGAAGACCAAAGTTAAATCT 59.510 38.462 6.26 0.00 0.00 2.40
2705 4181 7.664318 GGGTTCTGAAGACCAAAGTTAAATCTA 59.336 37.037 6.26 0.00 0.00 1.98
2739 4215 8.821147 ATGTTGTTCAGTCGTATTTGTAACTA 57.179 30.769 0.00 0.00 0.00 2.24
2754 4230 8.792830 ATTTGTAACTAATGTGCTGATACAGT 57.207 30.769 0.00 0.00 33.44 3.55
2816 4297 8.995220 ACATTGTGTAGTTGTACGTGAAATAAT 58.005 29.630 0.00 0.00 30.95 1.28
2822 4303 9.053840 TGTAGTTGTACGTGAAATAATGGAAAA 57.946 29.630 0.00 0.00 30.95 2.29
2863 4344 2.549349 GCAAGTTTCTACGGGAGTTCCA 60.549 50.000 0.00 0.00 43.33 3.53
2890 4371 8.195436 CGGAGTTCTCAAGTGGTAGAAATAATA 58.805 37.037 2.24 0.00 33.70 0.98
2967 4448 7.084486 GCAATGAATAATCCGGTAATCTTTCC 58.916 38.462 0.00 0.00 0.00 3.13
2975 4456 3.328343 TCCGGTAATCTTTCCCAAGTTCA 59.672 43.478 0.00 0.00 0.00 3.18
3058 4539 7.218314 AGATTAGGGTCTCATTTCCTGAAAT 57.782 36.000 0.00 0.00 41.33 2.17
3087 4568 4.986034 TCAGCATGCAAAGAAAAATGACAG 59.014 37.500 21.98 0.00 34.76 3.51
3088 4569 4.748102 CAGCATGCAAAGAAAAATGACAGT 59.252 37.500 21.98 0.00 0.00 3.55
3098 4579 3.691049 AAAATGACAGTGTGTGTTCGG 57.309 42.857 0.00 0.00 40.56 4.30
3114 4595 4.028026 GTGTTCGGAAAAATGTTCAACGTG 60.028 41.667 0.00 0.00 0.00 4.49
3127 4608 9.959749 AAATGTTCAACGTGTATTAAAAGATGT 57.040 25.926 0.00 0.00 0.00 3.06
3129 4610 8.996988 TGTTCAACGTGTATTAAAAGATGTTC 57.003 30.769 0.00 0.00 0.00 3.18
3130 4611 8.613482 TGTTCAACGTGTATTAAAAGATGTTCA 58.387 29.630 0.00 0.00 0.00 3.18
3131 4612 9.607285 GTTCAACGTGTATTAAAAGATGTTCAT 57.393 29.630 0.00 0.00 0.00 2.57
3132 4613 9.820229 TTCAACGTGTATTAAAAGATGTTCATC 57.180 29.630 4.80 4.80 0.00 2.92
3133 4614 9.214957 TCAACGTGTATTAAAAGATGTTCATCT 57.785 29.630 9.22 9.22 0.00 2.90
3134 4615 9.825972 CAACGTGTATTAAAAGATGTTCATCTT 57.174 29.630 18.64 18.64 42.25 2.40
3202 4684 6.707440 ACATGTACTCCAAAAATGTTCACA 57.293 33.333 0.00 0.00 0.00 3.58
3214 4696 9.649024 CCAAAAATGTTCACATGTTTCATAAAC 57.351 29.630 5.27 0.00 40.72 2.01
3597 5172 7.736447 AAACACATTGAAACAAAACAAGGAA 57.264 28.000 0.00 0.00 33.13 3.36
3598 5173 6.966435 ACACATTGAAACAAAACAAGGAAG 57.034 33.333 0.00 0.00 33.13 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.437239 CAACAGGAGCTACAGTATTGGAG 58.563 47.826 0.00 0.00 38.39 3.86
5 6 3.197766 CCAACAGGAGCTACAGTATTGGA 59.802 47.826 6.38 0.00 38.05 3.53
7 8 2.939103 GCCAACAGGAGCTACAGTATTG 59.061 50.000 0.00 0.00 0.00 1.90
8 9 2.418746 CGCCAACAGGAGCTACAGTATT 60.419 50.000 0.00 0.00 0.00 1.89
9 10 1.137086 CGCCAACAGGAGCTACAGTAT 59.863 52.381 0.00 0.00 0.00 2.12
10 11 0.530744 CGCCAACAGGAGCTACAGTA 59.469 55.000 0.00 0.00 0.00 2.74
11 12 1.293498 CGCCAACAGGAGCTACAGT 59.707 57.895 0.00 0.00 0.00 3.55
12 13 2.103042 GCGCCAACAGGAGCTACAG 61.103 63.158 0.00 0.00 43.85 2.74
13 14 2.047274 GCGCCAACAGGAGCTACA 60.047 61.111 0.00 0.00 43.85 2.74
14 15 2.820037 GGCGCCAACAGGAGCTAC 60.820 66.667 24.80 0.00 46.09 3.58
15 16 4.451150 CGGCGCCAACAGGAGCTA 62.451 66.667 28.98 0.00 46.09 3.32
57 58 4.768968 TGTGTGTTCATGAGAGATGAGAGA 59.231 41.667 0.00 0.00 0.00 3.10
86 87 5.109903 GTGTGTGTCTGTGTAGAGTTTCTT 58.890 41.667 0.00 0.00 32.48 2.52
96 97 1.270571 TGTGTGTGTGTGTGTCTGTGT 60.271 47.619 0.00 0.00 0.00 3.72
97 98 1.128507 GTGTGTGTGTGTGTGTCTGTG 59.871 52.381 0.00 0.00 0.00 3.66
98 99 1.270571 TGTGTGTGTGTGTGTGTCTGT 60.271 47.619 0.00 0.00 0.00 3.41
99 100 1.437625 TGTGTGTGTGTGTGTGTCTG 58.562 50.000 0.00 0.00 0.00 3.51
100 101 1.804151 GTTGTGTGTGTGTGTGTGTCT 59.196 47.619 0.00 0.00 0.00 3.41
101 102 1.135803 GGTTGTGTGTGTGTGTGTGTC 60.136 52.381 0.00 0.00 0.00 3.67
155 158 4.601857 TCTTATTCCACCAAAGAGAAGGGT 59.398 41.667 0.00 0.00 34.59 4.34
164 167 7.390440 CACAATGTAGTCTCTTATTCCACCAAA 59.610 37.037 0.00 0.00 0.00 3.28
213 218 1.000385 TGTTGGAGCAATGAAAAGGCG 60.000 47.619 0.00 0.00 0.00 5.52
214 219 2.224018 TGTGTTGGAGCAATGAAAAGGC 60.224 45.455 0.00 0.00 0.00 4.35
232 237 6.882140 TGGGTCCTTTGTATATAAGTGTTGTG 59.118 38.462 0.00 0.00 0.00 3.33
317 354 1.569493 CTGTTAGTGGTGCGTGTGC 59.431 57.895 0.00 0.00 43.20 4.57
318 355 1.157257 TGCTGTTAGTGGTGCGTGTG 61.157 55.000 0.00 0.00 0.00 3.82
319 356 0.250295 ATGCTGTTAGTGGTGCGTGT 60.250 50.000 0.00 0.00 0.00 4.49
320 357 0.166597 CATGCTGTTAGTGGTGCGTG 59.833 55.000 0.00 0.00 36.35 5.34
321 358 1.577328 GCATGCTGTTAGTGGTGCGT 61.577 55.000 11.37 0.00 0.00 5.24
322 359 1.135315 GCATGCTGTTAGTGGTGCG 59.865 57.895 11.37 0.00 0.00 5.34
323 360 0.169672 CTGCATGCTGTTAGTGGTGC 59.830 55.000 20.33 0.00 0.00 5.01
324 361 0.169672 GCTGCATGCTGTTAGTGGTG 59.830 55.000 23.42 1.64 38.95 4.17
325 362 1.300971 CGCTGCATGCTGTTAGTGGT 61.301 55.000 23.42 0.00 40.11 4.16
326 363 1.426621 CGCTGCATGCTGTTAGTGG 59.573 57.895 23.42 4.43 40.11 4.00
327 364 1.226211 GCGCTGCATGCTGTTAGTG 60.226 57.895 23.42 17.09 40.11 2.74
328 365 1.376424 AGCGCTGCATGCTGTTAGT 60.376 52.632 23.42 5.88 42.14 2.24
329 366 3.494378 AGCGCTGCATGCTGTTAG 58.506 55.556 23.42 16.35 42.14 2.34
340 377 2.182842 GGAATAGTGGGCAGCGCTG 61.183 63.158 32.83 32.83 0.00 5.18
341 378 2.190578 GGAATAGTGGGCAGCGCT 59.809 61.111 2.64 2.64 0.00 5.92
342 379 1.889573 GAGGAATAGTGGGCAGCGC 60.890 63.158 0.00 0.00 0.00 5.92
343 380 0.107703 TTGAGGAATAGTGGGCAGCG 60.108 55.000 0.00 0.00 0.00 5.18
344 381 1.383523 GTTGAGGAATAGTGGGCAGC 58.616 55.000 0.00 0.00 0.00 5.25
345 382 1.656652 CGTTGAGGAATAGTGGGCAG 58.343 55.000 0.00 0.00 0.00 4.85
346 383 0.251916 CCGTTGAGGAATAGTGGGCA 59.748 55.000 0.00 0.00 45.00 5.36
347 384 1.095807 GCCGTTGAGGAATAGTGGGC 61.096 60.000 0.00 0.00 45.00 5.36
348 385 0.463833 GGCCGTTGAGGAATAGTGGG 60.464 60.000 0.00 0.00 45.00 4.61
349 386 0.810031 CGGCCGTTGAGGAATAGTGG 60.810 60.000 19.50 0.00 45.00 4.00
350 387 1.429148 GCGGCCGTTGAGGAATAGTG 61.429 60.000 28.70 0.00 45.00 2.74
351 388 1.153429 GCGGCCGTTGAGGAATAGT 60.153 57.895 28.70 0.00 45.00 2.12
352 389 0.532862 ATGCGGCCGTTGAGGAATAG 60.533 55.000 28.70 0.00 45.00 1.73
353 390 0.753867 TATGCGGCCGTTGAGGAATA 59.246 50.000 28.70 10.39 45.00 1.75
354 391 0.814010 GTATGCGGCCGTTGAGGAAT 60.814 55.000 28.70 11.35 45.00 3.01
355 392 1.448893 GTATGCGGCCGTTGAGGAA 60.449 57.895 28.70 4.22 45.00 3.36
356 393 2.173758 TTGTATGCGGCCGTTGAGGA 62.174 55.000 28.70 6.64 45.00 3.71
357 394 1.743623 TTGTATGCGGCCGTTGAGG 60.744 57.895 28.70 0.00 44.97 3.86
358 395 1.423845 GTTGTATGCGGCCGTTGAG 59.576 57.895 28.70 0.00 0.00 3.02
359 396 2.036006 GGTTGTATGCGGCCGTTGA 61.036 57.895 28.70 11.81 0.00 3.18
360 397 2.483288 GGTTGTATGCGGCCGTTG 59.517 61.111 28.70 0.00 0.00 4.10
361 398 2.748647 GGGTTGTATGCGGCCGTT 60.749 61.111 28.70 17.38 0.00 4.44
367 404 4.823419 TCGGCCGGGTTGTATGCG 62.823 66.667 27.83 0.00 0.00 4.73
368 405 2.895372 CTCGGCCGGGTTGTATGC 60.895 66.667 27.83 0.00 0.00 3.14
369 406 1.520787 GACTCGGCCGGGTTGTATG 60.521 63.158 34.97 10.98 0.00 2.39
370 407 2.728435 GGACTCGGCCGGGTTGTAT 61.728 63.158 34.97 8.95 0.00 2.29
371 408 3.384532 GGACTCGGCCGGGTTGTA 61.385 66.667 34.97 7.02 0.00 2.41
373 410 4.760047 CTGGACTCGGCCGGGTTG 62.760 72.222 34.97 21.35 0.00 3.77
377 414 4.208686 GTAGCTGGACTCGGCCGG 62.209 72.222 27.83 18.67 46.14 6.13
378 415 4.208686 GGTAGCTGGACTCGGCCG 62.209 72.222 22.12 22.12 46.14 6.13
379 416 2.656069 TTGGTAGCTGGACTCGGCC 61.656 63.158 0.00 0.00 46.14 6.13
380 417 1.448013 GTTGGTAGCTGGACTCGGC 60.448 63.158 0.00 0.00 45.35 5.54
381 418 0.173708 GAGTTGGTAGCTGGACTCGG 59.826 60.000 0.00 0.00 30.45 4.63
382 419 0.888619 TGAGTTGGTAGCTGGACTCG 59.111 55.000 0.00 0.00 41.00 4.18
383 420 2.898705 CATGAGTTGGTAGCTGGACTC 58.101 52.381 0.00 13.24 39.11 3.36
384 421 1.065854 GCATGAGTTGGTAGCTGGACT 60.066 52.381 0.00 0.00 0.00 3.85
385 422 1.339055 TGCATGAGTTGGTAGCTGGAC 60.339 52.381 0.00 0.00 0.00 4.02
386 423 0.983467 TGCATGAGTTGGTAGCTGGA 59.017 50.000 0.00 0.00 0.00 3.86
387 424 1.674441 CATGCATGAGTTGGTAGCTGG 59.326 52.381 22.59 0.00 0.00 4.85
388 425 1.065102 GCATGCATGAGTTGGTAGCTG 59.935 52.381 30.64 0.23 0.00 4.24
389 426 1.340308 TGCATGCATGAGTTGGTAGCT 60.340 47.619 30.64 0.00 0.00 3.32
390 427 1.097232 TGCATGCATGAGTTGGTAGC 58.903 50.000 30.64 11.74 0.00 3.58
391 428 3.192001 AGTTTGCATGCATGAGTTGGTAG 59.808 43.478 30.64 0.20 0.00 3.18
392 429 3.156293 AGTTTGCATGCATGAGTTGGTA 58.844 40.909 30.64 0.00 0.00 3.25
395 432 4.801891 AGTTAGTTTGCATGCATGAGTTG 58.198 39.130 30.64 5.23 0.00 3.16
406 443 5.046304 AGAGAATAGGCTGAGTTAGTTTGCA 60.046 40.000 0.00 0.00 0.00 4.08
448 609 7.255173 CGTTAGTACTAGAGATGCATGGTAGTT 60.255 40.741 2.46 0.00 0.00 2.24
477 638 1.081309 TGATGTGTGCGTTGCATGC 60.081 52.632 11.82 11.82 41.91 4.06
486 647 1.194547 CAAGTGTACCGTGATGTGTGC 59.805 52.381 0.00 0.00 0.00 4.57
490 651 1.336517 CGTCCAAGTGTACCGTGATGT 60.337 52.381 0.00 0.00 0.00 3.06
513 674 9.952030 TTAGGATTAATCTTGACATGTGTTGTA 57.048 29.630 14.95 0.00 39.18 2.41
557 718 1.516892 CCGTTCCAATGGCCAATGG 59.483 57.895 31.12 31.12 38.09 3.16
564 725 0.321564 TCTGTCTGCCGTTCCAATGG 60.322 55.000 0.00 0.00 38.15 3.16
566 727 1.611673 CCTTCTGTCTGCCGTTCCAAT 60.612 52.381 0.00 0.00 0.00 3.16
570 731 1.363744 CATCCTTCTGTCTGCCGTTC 58.636 55.000 0.00 0.00 0.00 3.95
571 732 0.036010 CCATCCTTCTGTCTGCCGTT 60.036 55.000 0.00 0.00 0.00 4.44
572 733 1.599047 CCATCCTTCTGTCTGCCGT 59.401 57.895 0.00 0.00 0.00 5.68
573 734 1.817099 GCCATCCTTCTGTCTGCCG 60.817 63.158 0.00 0.00 0.00 5.69
574 735 0.322816 TTGCCATCCTTCTGTCTGCC 60.323 55.000 0.00 0.00 0.00 4.85
576 737 4.796038 AAATTTGCCATCCTTCTGTCTG 57.204 40.909 0.00 0.00 0.00 3.51
577 738 5.324409 TGTAAATTTGCCATCCTTCTGTCT 58.676 37.500 0.00 0.00 0.00 3.41
578 739 5.393461 CCTGTAAATTTGCCATCCTTCTGTC 60.393 44.000 0.00 0.00 0.00 3.51
579 740 4.463891 CCTGTAAATTTGCCATCCTTCTGT 59.536 41.667 0.00 0.00 0.00 3.41
580 741 4.678840 GCCTGTAAATTTGCCATCCTTCTG 60.679 45.833 0.00 0.00 0.00 3.02
581 742 3.448660 GCCTGTAAATTTGCCATCCTTCT 59.551 43.478 0.00 0.00 0.00 2.85
582 743 3.448660 AGCCTGTAAATTTGCCATCCTTC 59.551 43.478 0.00 0.00 0.00 3.46
583 744 3.444029 AGCCTGTAAATTTGCCATCCTT 58.556 40.909 0.00 0.00 0.00 3.36
584 745 3.026694 GAGCCTGTAAATTTGCCATCCT 58.973 45.455 0.00 0.00 0.00 3.24
585 746 2.223572 CGAGCCTGTAAATTTGCCATCC 60.224 50.000 0.00 0.00 0.00 3.51
586 747 2.423538 ACGAGCCTGTAAATTTGCCATC 59.576 45.455 0.00 0.00 0.00 3.51
587 748 2.423538 GACGAGCCTGTAAATTTGCCAT 59.576 45.455 0.00 0.00 0.00 4.40
588 749 1.810151 GACGAGCCTGTAAATTTGCCA 59.190 47.619 0.00 0.00 0.00 4.92
589 750 1.202031 CGACGAGCCTGTAAATTTGCC 60.202 52.381 0.00 0.00 0.00 4.52
590 751 1.202031 CCGACGAGCCTGTAAATTTGC 60.202 52.381 0.00 0.00 0.00 3.68
591 752 2.073816 ACCGACGAGCCTGTAAATTTG 58.926 47.619 0.00 0.00 0.00 2.32
592 753 2.073816 CACCGACGAGCCTGTAAATTT 58.926 47.619 0.00 0.00 0.00 1.82
593 754 1.274167 TCACCGACGAGCCTGTAAATT 59.726 47.619 0.00 0.00 0.00 1.82
594 755 0.892755 TCACCGACGAGCCTGTAAAT 59.107 50.000 0.00 0.00 0.00 1.40
595 756 0.675083 TTCACCGACGAGCCTGTAAA 59.325 50.000 0.00 0.00 0.00 2.01
596 757 0.242825 CTTCACCGACGAGCCTGTAA 59.757 55.000 0.00 0.00 0.00 2.41
597 758 1.880894 CTTCACCGACGAGCCTGTA 59.119 57.895 0.00 0.00 0.00 2.74
598 759 2.651361 CTTCACCGACGAGCCTGT 59.349 61.111 0.00 0.00 0.00 4.00
599 760 2.811317 GCTTCACCGACGAGCCTG 60.811 66.667 0.00 0.00 0.00 4.85
600 761 3.303135 TGCTTCACCGACGAGCCT 61.303 61.111 0.00 0.00 35.59 4.58
602 763 3.112709 GGTGCTTCACCGACGAGC 61.113 66.667 0.00 0.00 44.95 5.03
610 771 2.610374 TGTAAACTTGACGGTGCTTCAC 59.390 45.455 0.00 0.00 0.00 3.18
611 772 2.869801 CTGTAAACTTGACGGTGCTTCA 59.130 45.455 0.00 0.00 0.00 3.02
612 773 2.870411 ACTGTAAACTTGACGGTGCTTC 59.130 45.455 0.00 0.00 35.06 3.86
613 774 2.914059 ACTGTAAACTTGACGGTGCTT 58.086 42.857 0.00 0.00 35.06 3.91
614 775 2.614829 ACTGTAAACTTGACGGTGCT 57.385 45.000 0.00 0.00 35.06 4.40
615 776 3.387397 ACTACTGTAAACTTGACGGTGC 58.613 45.455 1.28 0.00 37.03 5.01
617 778 3.006217 GGGACTACTGTAAACTTGACGGT 59.994 47.826 0.00 0.00 39.70 4.83
621 782 9.059260 GTATTTTTGGGACTACTGTAAACTTGA 57.941 33.333 0.00 0.00 0.00 3.02
622 783 8.294577 GGTATTTTTGGGACTACTGTAAACTTG 58.705 37.037 0.00 0.00 0.00 3.16
623 784 8.222637 AGGTATTTTTGGGACTACTGTAAACTT 58.777 33.333 0.00 0.00 0.00 2.66
624 785 7.752638 AGGTATTTTTGGGACTACTGTAAACT 58.247 34.615 0.00 0.00 0.00 2.66
625 786 7.991084 AGGTATTTTTGGGACTACTGTAAAC 57.009 36.000 0.00 0.00 0.00 2.01
626 787 7.449086 CCAAGGTATTTTTGGGACTACTGTAAA 59.551 37.037 0.00 0.00 41.11 2.01
627 788 6.943718 CCAAGGTATTTTTGGGACTACTGTAA 59.056 38.462 0.00 0.00 41.11 2.41
628 789 6.272792 TCCAAGGTATTTTTGGGACTACTGTA 59.727 38.462 4.35 0.00 44.18 2.74
629 790 5.073965 TCCAAGGTATTTTTGGGACTACTGT 59.926 40.000 4.35 0.00 44.18 3.55
630 791 5.566469 TCCAAGGTATTTTTGGGACTACTG 58.434 41.667 4.35 0.00 44.18 2.74
631 792 5.550403 TCTCCAAGGTATTTTTGGGACTACT 59.450 40.000 4.35 0.00 44.18 2.57
632 793 5.646793 GTCTCCAAGGTATTTTTGGGACTAC 59.353 44.000 13.56 2.87 44.18 2.73
633 794 5.550403 AGTCTCCAAGGTATTTTTGGGACTA 59.450 40.000 18.24 0.00 44.80 2.59
634 795 4.354087 AGTCTCCAAGGTATTTTTGGGACT 59.646 41.667 15.90 15.90 43.52 3.85
635 796 4.663334 AGTCTCCAAGGTATTTTTGGGAC 58.337 43.478 13.22 13.22 44.18 4.46
636 797 5.333566 AAGTCTCCAAGGTATTTTTGGGA 57.666 39.130 4.35 0.00 44.18 4.37
637 798 5.304357 ACAAAGTCTCCAAGGTATTTTTGGG 59.696 40.000 4.35 0.00 44.18 4.12
638 799 6.405278 ACAAAGTCTCCAAGGTATTTTTGG 57.595 37.500 0.00 0.00 45.17 3.28
639 800 9.244799 GTTTACAAAGTCTCCAAGGTATTTTTG 57.755 33.333 0.00 0.00 0.00 2.44
640 801 8.418662 GGTTTACAAAGTCTCCAAGGTATTTTT 58.581 33.333 0.00 0.00 0.00 1.94
650 811 3.181448 GGTCTGGGTTTACAAAGTCTCCA 60.181 47.826 0.00 0.00 0.00 3.86
669 835 8.366401 AGTTTTAGTTTCTAGTACCTTCTGGTC 58.634 37.037 0.00 0.00 44.78 4.02
672 838 7.541437 CCGAGTTTTAGTTTCTAGTACCTTCTG 59.459 40.741 0.00 0.00 0.00 3.02
707 873 1.338200 CGGGCAGAGCTTTCTACAAGT 60.338 52.381 0.00 0.00 0.00 3.16
712 878 1.219124 CAGCGGGCAGAGCTTTCTA 59.781 57.895 0.00 0.00 44.06 2.10
757 1445 4.572985 TGCCATGTTTATGCTGATAAGC 57.427 40.909 0.00 0.00 32.79 3.09
851 1657 1.352352 CAGCAGGAAGGAAGGAAGGAA 59.648 52.381 0.00 0.00 0.00 3.36
875 1697 0.691332 GTCGGGGAGAAGAAAAGGGT 59.309 55.000 0.00 0.00 0.00 4.34
893 1715 1.145803 GAGCGCGGTTTTGTAGAAGT 58.854 50.000 14.00 0.00 0.00 3.01
896 1718 0.036765 ATGGAGCGCGGTTTTGTAGA 60.037 50.000 14.00 0.00 0.00 2.59
921 1743 0.110486 GGAGCTCTGGTTGGTTTGGA 59.890 55.000 14.64 0.00 0.00 3.53
922 1744 0.111253 AGGAGCTCTGGTTGGTTTGG 59.889 55.000 14.64 0.00 0.00 3.28
923 1745 1.986882 AAGGAGCTCTGGTTGGTTTG 58.013 50.000 14.64 0.00 0.00 2.93
924 1746 2.310538 CAAAGGAGCTCTGGTTGGTTT 58.689 47.619 14.64 0.14 0.00 3.27
925 1747 1.215423 ACAAAGGAGCTCTGGTTGGTT 59.785 47.619 14.64 0.00 0.00 3.67
926 1748 0.846693 ACAAAGGAGCTCTGGTTGGT 59.153 50.000 14.64 5.99 0.00 3.67
928 1750 1.882623 GGAACAAAGGAGCTCTGGTTG 59.117 52.381 14.64 16.41 0.00 3.77
949 1777 3.681034 CGTCTCTTTCTTGATGCCTGGAT 60.681 47.826 0.00 0.00 0.00 3.41
955 1802 3.238108 TCTCCGTCTCTTTCTTGATGC 57.762 47.619 0.00 0.00 0.00 3.91
1146 2093 0.523072 GCATTGCTCAGGCGAGAAAA 59.477 50.000 0.16 4.62 40.36 2.29
1187 2146 2.819595 ACGCACCATGATCACCGC 60.820 61.111 0.00 0.00 0.00 5.68
1191 2150 2.047370 ACGCACGCACCATGATCA 60.047 55.556 0.00 0.00 0.00 2.92
1195 2154 4.746951 CTGCACGCACGCACCATG 62.747 66.667 0.00 0.00 36.86 3.66
1303 2388 0.942962 CGATCTTGAGCCCTGCATTC 59.057 55.000 0.00 0.00 0.00 2.67
1353 2438 2.689983 ACTCTGAACAGCCAAAACCAAG 59.310 45.455 0.00 0.00 0.00 3.61
1362 2448 2.872858 AGAAACGAAACTCTGAACAGCC 59.127 45.455 0.00 0.00 0.00 4.85
1386 2472 1.901833 AGTTTGGCAGGCTTAATTGGG 59.098 47.619 0.00 0.00 0.00 4.12
1390 2476 5.488262 AAATTCAGTTTGGCAGGCTTAAT 57.512 34.783 0.00 0.00 0.00 1.40
1407 2493 9.520204 CCACAGGTATTCATCATGTTTAAATTC 57.480 33.333 0.00 0.00 0.00 2.17
1408 2494 9.034800 ACCACAGGTATTCATCATGTTTAAATT 57.965 29.630 0.00 0.00 32.11 1.82
1409 2495 8.469200 CACCACAGGTATTCATCATGTTTAAAT 58.531 33.333 0.00 0.00 32.11 1.40
1410 2496 7.576666 GCACCACAGGTATTCATCATGTTTAAA 60.577 37.037 0.00 0.00 32.11 1.52
1411 2497 6.127758 GCACCACAGGTATTCATCATGTTTAA 60.128 38.462 0.00 0.00 32.11 1.52
1412 2498 5.356751 GCACCACAGGTATTCATCATGTTTA 59.643 40.000 0.00 0.00 32.11 2.01
1413 2499 4.158394 GCACCACAGGTATTCATCATGTTT 59.842 41.667 0.00 0.00 32.11 2.83
1414 2500 3.696051 GCACCACAGGTATTCATCATGTT 59.304 43.478 0.00 0.00 32.11 2.71
1415 2501 3.282021 GCACCACAGGTATTCATCATGT 58.718 45.455 0.00 0.00 32.11 3.21
1416 2502 3.281158 TGCACCACAGGTATTCATCATG 58.719 45.455 0.00 0.00 32.11 3.07
1417 2503 3.548770 CTGCACCACAGGTATTCATCAT 58.451 45.455 0.00 0.00 43.19 2.45
1418 2504 2.989909 CTGCACCACAGGTATTCATCA 58.010 47.619 0.00 0.00 43.19 3.07
1521 2623 2.901249 ACGAAATCTATGGTTGGTCCG 58.099 47.619 0.00 0.00 39.52 4.79
1557 2659 1.538512 TGCTGCTGCTTTCATGAACTC 59.461 47.619 17.00 3.42 40.48 3.01
1638 2744 0.449388 GGCAACTGAAGAATCCTGCG 59.551 55.000 0.00 0.00 0.00 5.18
1710 3010 5.770663 GTGCCACTGGAATCTAGAGTAGATA 59.229 44.000 0.00 0.00 44.44 1.98
1713 3013 3.701542 TGTGCCACTGGAATCTAGAGTAG 59.298 47.826 0.00 0.00 0.00 2.57
1715 3015 2.540383 TGTGCCACTGGAATCTAGAGT 58.460 47.619 0.00 0.00 0.00 3.24
1716 3016 3.834489 ATGTGCCACTGGAATCTAGAG 57.166 47.619 0.00 0.00 0.00 2.43
1770 3070 7.619161 GCGCATTAGTTGAAACTGTTATTTTGG 60.619 37.037 0.30 0.00 40.07 3.28
1771 3071 7.114811 AGCGCATTAGTTGAAACTGTTATTTTG 59.885 33.333 11.47 0.00 40.07 2.44
1815 3133 2.223782 GCAATTTGCCACTGACTGTTGA 60.224 45.455 10.34 0.00 37.42 3.18
1816 3134 2.129607 GCAATTTGCCACTGACTGTTG 58.870 47.619 10.34 0.00 37.42 3.33
1817 3135 2.034124 AGCAATTTGCCACTGACTGTT 58.966 42.857 17.51 0.00 46.52 3.16
1825 3147 7.278424 ACATGATAAACATAAGCAATTTGCCAC 59.722 33.333 17.51 0.00 39.95 5.01
1948 3291 4.663636 ATACGAAAAAGAAGGCGTTGAG 57.336 40.909 0.00 0.00 38.09 3.02
1959 3302 8.877779 ACTGATCTGAATCTGAATACGAAAAAG 58.122 33.333 6.60 0.00 35.46 2.27
1966 3309 8.659925 ATGAACACTGATCTGAATCTGAATAC 57.340 34.615 6.60 0.00 35.46 1.89
1968 3311 9.676861 TTAATGAACACTGATCTGAATCTGAAT 57.323 29.630 6.60 0.00 35.46 2.57
1969 3312 9.676861 ATTAATGAACACTGATCTGAATCTGAA 57.323 29.630 6.60 0.00 35.46 3.02
1970 3313 9.322773 GATTAATGAACACTGATCTGAATCTGA 57.677 33.333 6.60 0.00 35.46 3.27
1971 3314 9.106070 TGATTAATGAACACTGATCTGAATCTG 57.894 33.333 6.60 0.00 37.01 2.90
2015 3361 8.367660 TCCCCTAAAAATAATGTACATTGCAA 57.632 30.769 27.62 11.23 32.50 4.08
2020 3366 8.838649 AGCTTTCCCCTAAAAATAATGTACAT 57.161 30.769 1.41 1.41 0.00 2.29
2026 3372 5.593095 GGACGAGCTTTCCCCTAAAAATAAT 59.407 40.000 4.28 0.00 0.00 1.28
2027 3373 4.945543 GGACGAGCTTTCCCCTAAAAATAA 59.054 41.667 4.28 0.00 0.00 1.40
2028 3374 4.520179 GGACGAGCTTTCCCCTAAAAATA 58.480 43.478 4.28 0.00 0.00 1.40
2029 3375 3.353557 GGACGAGCTTTCCCCTAAAAAT 58.646 45.455 4.28 0.00 0.00 1.82
2054 3400 0.031585 CGCCGTCAAATCCCGATCTA 59.968 55.000 0.00 0.00 0.00 1.98
2066 3412 1.781025 CTTTTGTCCAAGCGCCGTCA 61.781 55.000 2.29 0.00 0.00 4.35
2115 3461 4.529897 ACATGGTATGATTGTGCTCACAT 58.470 39.130 3.31 0.00 41.52 3.21
2119 3465 5.762825 ATGAACATGGTATGATTGTGCTC 57.237 39.130 0.00 0.00 0.00 4.26
2124 3470 6.347160 CGCAGTCTATGAACATGGTATGATTG 60.347 42.308 0.00 0.00 0.00 2.67
2128 3474 3.185188 GCGCAGTCTATGAACATGGTATG 59.815 47.826 0.30 0.00 0.00 2.39
2131 3477 1.208052 AGCGCAGTCTATGAACATGGT 59.792 47.619 11.47 0.00 0.00 3.55
2181 3656 1.822371 GGTTGTGGTGAACTGTTGGTT 59.178 47.619 0.00 0.00 41.40 3.67
2182 3657 1.005450 AGGTTGTGGTGAACTGTTGGT 59.995 47.619 0.00 0.00 0.00 3.67
2186 3661 2.290641 TGACAAGGTTGTGGTGAACTGT 60.291 45.455 0.00 0.00 42.43 3.55
2190 3665 2.948979 GTGATGACAAGGTTGTGGTGAA 59.051 45.455 0.00 0.00 42.43 3.18
2220 3695 5.188327 TCACTGTAGCATATACAGCAGAC 57.812 43.478 13.52 0.98 46.46 3.51
2224 3699 4.250116 AGCTCACTGTAGCATATACAGC 57.750 45.455 13.52 2.72 46.46 4.40
2236 3711 1.072965 CCCCTTTCAGAAGCTCACTGT 59.927 52.381 16.70 0.00 36.81 3.55
2307 3782 1.295930 CGAAGCGACGAAAATCGGC 60.296 57.895 0.00 0.00 46.24 5.54
2353 3828 8.964476 TGGATTGGAGATATTCTTAACTGAAC 57.036 34.615 0.00 0.00 0.00 3.18
2358 3833 7.446625 AGCACATGGATTGGAGATATTCTTAAC 59.553 37.037 0.00 0.00 0.00 2.01
2361 3836 5.950023 AGCACATGGATTGGAGATATTCTT 58.050 37.500 0.00 0.00 0.00 2.52
2377 3852 4.895224 AGCAAGATGAATGTAGCACATG 57.105 40.909 3.08 0.00 37.97 3.21
2454 3930 1.664649 CTTCTTGTGCGACTCGGCA 60.665 57.895 0.00 0.00 41.45 5.69
2639 4115 2.936928 TGCACATGGAGACTTGCAG 58.063 52.632 2.55 0.00 40.01 4.41
2666 4142 6.015940 GTCTTCAGAACCCATCACTGAATTTT 60.016 38.462 0.00 0.00 45.34 1.82
2672 4148 2.038952 TGGTCTTCAGAACCCATCACTG 59.961 50.000 0.00 0.00 0.00 3.66
2682 4158 9.621629 TGTTAGATTTAACTTTGGTCTTCAGAA 57.378 29.630 7.57 0.00 39.90 3.02
2721 4197 7.062956 CAGCACATTAGTTACAAATACGACTGA 59.937 37.037 0.00 0.00 0.00 3.41
2739 4215 5.349061 TCTCATCACTGTATCAGCACATT 57.651 39.130 0.00 0.00 34.37 2.71
2754 4230 2.967599 AGTAGCACGCATTCTCATCA 57.032 45.000 0.00 0.00 0.00 3.07
2806 4282 7.535139 ACCACTGTATTTTCCATTATTTCACG 58.465 34.615 0.00 0.00 0.00 4.35
2816 4297 4.074627 TCGACAACCACTGTATTTTCCA 57.925 40.909 0.00 0.00 38.84 3.53
2822 4303 2.876091 CACGATCGACAACCACTGTAT 58.124 47.619 24.34 0.00 38.84 2.29
2863 4344 2.872732 TCTACCACTTGAGAACTCCGT 58.127 47.619 0.00 0.00 0.00 4.69
2907 4388 3.489813 TGTCGATTGTGACACGAGG 57.510 52.632 1.26 0.00 43.62 4.63
2967 4448 3.996150 AATGCTCACTTGTGAACTTGG 57.004 42.857 4.95 0.00 0.00 3.61
3058 4539 7.656542 TCATTTTTCTTTGCATGCTGAACATAA 59.343 29.630 20.33 13.22 36.64 1.90
3072 4553 6.237279 CGAACACACACTGTCATTTTTCTTTG 60.237 38.462 0.00 0.00 30.29 2.77
3087 4568 4.416620 TGAACATTTTTCCGAACACACAC 58.583 39.130 0.00 0.00 0.00 3.82
3088 4569 4.703645 TGAACATTTTTCCGAACACACA 57.296 36.364 0.00 0.00 0.00 3.72
3140 4621 9.859427 TTTTCAGATGCACCTTGAATATTTTAG 57.141 29.630 9.38 0.00 0.00 1.85
3167 4648 8.436046 TTTGGAGTACATGTTAACGTAAACTT 57.564 30.769 2.30 1.78 0.00 2.66
3168 4649 8.436046 TTTTGGAGTACATGTTAACGTAAACT 57.564 30.769 2.30 11.93 0.00 2.66
3169 4650 9.667989 ATTTTTGGAGTACATGTTAACGTAAAC 57.332 29.630 2.30 2.14 0.00 2.01
3178 4659 7.106439 TGTGAACATTTTTGGAGTACATGTT 57.894 32.000 2.30 5.45 40.07 2.71
3236 4718 9.344772 TGTGGACAGTTGTTTACATTTTATACT 57.655 29.630 0.00 0.00 0.00 2.12
3444 5018 9.429359 TGTTTCAAATACACACTGAACATTTTT 57.571 25.926 0.00 0.00 0.00 1.94
3489 5063 9.440784 ACTTTTTGTATACACGTGTAACATTTG 57.559 29.630 30.46 22.07 35.74 2.32
3499 5073 7.536895 TGTTGTACACTTTTTGTATACACGT 57.463 32.000 4.68 0.00 42.82 4.49
3598 5173 9.618410 CGATTTTAGAACATTTTGTGTGTTTTC 57.382 29.630 0.00 0.00 41.14 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.