Multiple sequence alignment - TraesCS2B01G062000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G062000 chr2B 100.000 2374 0 0 1 2374 29555274 29557647 0.000000e+00 4385.0
1 TraesCS2B01G062000 chr2B 78.692 474 50 34 1 461 29319466 29319901 3.890000e-68 268.0
2 TraesCS2B01G062000 chr2B 78.481 474 51 34 1 461 29264229 29264664 1.810000e-66 263.0
3 TraesCS2B01G062000 chr2B 78.481 474 51 32 1 461 29350585 29351020 1.810000e-66 263.0
4 TraesCS2B01G062000 chr2A 93.074 1848 95 15 532 2373 19028390 19026570 0.000000e+00 2673.0
5 TraesCS2B01G062000 chr2A 99.025 513 4 1 1 512 19029011 19028499 0.000000e+00 918.0
6 TraesCS2B01G062000 chr2D 93.517 1558 74 11 532 2087 17606173 17604641 0.000000e+00 2292.0
7 TraesCS2B01G062000 chr2D 93.261 1558 73 14 532 2087 17631923 17630396 0.000000e+00 2266.0
8 TraesCS2B01G062000 chr2D 97.856 513 8 2 1 512 17606792 17606282 0.000000e+00 883.0
9 TraesCS2B01G062000 chr2D 97.661 513 11 1 1 512 17632544 17632032 0.000000e+00 880.0
10 TraesCS2B01G062000 chr6B 87.500 384 43 5 1994 2374 30300212 30300593 2.800000e-119 438.0
11 TraesCS2B01G062000 chr6B 86.494 385 46 6 1994 2374 132122627 132123009 3.650000e-113 418.0
12 TraesCS2B01G062000 chr6B 86.614 381 44 7 1999 2374 132127796 132128174 4.720000e-112 414.0
13 TraesCS2B01G062000 chr5A 87.037 378 45 4 1999 2374 640131375 640131750 7.840000e-115 424.0
14 TraesCS2B01G062000 chr5A 100.000 33 0 0 1758 1790 449015213 449015181 7.090000e-06 62.1
15 TraesCS2B01G062000 chr7D 86.979 384 39 11 1999 2374 57071817 57072197 2.820000e-114 422.0
16 TraesCS2B01G062000 chr5B 86.877 381 43 7 1999 2374 695721637 695722015 1.010000e-113 420.0
17 TraesCS2B01G062000 chr5B 86.614 381 44 7 1999 2374 677829912 677830290 4.720000e-112 414.0
18 TraesCS2B01G062000 chr7A 85.396 404 49 10 1977 2374 708020642 708021041 6.110000e-111 411.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G062000 chr2B 29555274 29557647 2373 False 4385.0 4385 100.0000 1 2374 1 chr2B.!!$F4 2373
1 TraesCS2B01G062000 chr2A 19026570 19029011 2441 True 1795.5 2673 96.0495 1 2373 2 chr2A.!!$R1 2372
2 TraesCS2B01G062000 chr2D 17604641 17606792 2151 True 1587.5 2292 95.6865 1 2087 2 chr2D.!!$R1 2086
3 TraesCS2B01G062000 chr2D 17630396 17632544 2148 True 1573.0 2266 95.4610 1 2087 2 chr2D.!!$R2 2086

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
739 833 0.034767 AGGTGTGGGATGCTCATGTG 60.035 55.0 0.0 0.0 0.0 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1814 1909 0.248289 TACAAACTGCTAGTCCGGGC 59.752 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 2.193127 TGGGATCAGTTCCGTGGTATT 58.807 47.619 0.00 0.00 46.52 1.89
243 244 5.880332 GGCAATTTCTACACTAAGATGTGGA 59.120 40.000 0.00 0.00 41.84 4.02
533 612 2.287977 TCCAAGACGAAGGAGAGTGA 57.712 50.000 0.00 0.00 0.00 3.41
534 613 1.887198 TCCAAGACGAAGGAGAGTGAC 59.113 52.381 0.00 0.00 0.00 3.67
535 614 1.067495 CCAAGACGAAGGAGAGTGACC 60.067 57.143 0.00 0.00 0.00 4.02
536 615 1.613925 CAAGACGAAGGAGAGTGACCA 59.386 52.381 0.00 0.00 0.00 4.02
537 616 2.223803 AGACGAAGGAGAGTGACCAT 57.776 50.000 0.00 0.00 0.00 3.55
538 617 1.821753 AGACGAAGGAGAGTGACCATG 59.178 52.381 0.00 0.00 0.00 3.66
571 664 3.608474 GCACGACCAACCACAAATTAGAC 60.608 47.826 0.00 0.00 0.00 2.59
639 733 7.379098 AGTCTGTTAGCCTAAAAATTGTAGC 57.621 36.000 0.00 0.00 0.00 3.58
675 769 3.249189 GGTGACAGCAGGGGGTCA 61.249 66.667 0.00 0.00 41.44 4.02
706 800 4.653801 TCCTGGTGCACAGCTATTATTAGA 59.346 41.667 20.43 1.44 46.14 2.10
739 833 0.034767 AGGTGTGGGATGCTCATGTG 60.035 55.000 0.00 0.00 0.00 3.21
775 869 1.249407 TTGCTTGCATGTCATCAGCA 58.751 45.000 2.92 2.92 36.32 4.41
781 875 1.135228 TGCATGTCATCAGCATTGTGC 60.135 47.619 0.00 0.00 45.46 4.57
801 895 1.644786 GGTCGTGCACATACAAGCCC 61.645 60.000 18.64 0.00 0.00 5.19
812 906 5.524646 GCACATACAAGCCCGTTATTAGTAA 59.475 40.000 0.00 0.00 0.00 2.24
818 912 4.412796 AGCCCGTTATTAGTAAGTTCCC 57.587 45.455 0.00 0.00 0.00 3.97
835 929 7.560796 AAGTTCCCTATATTGATCCGAGATT 57.439 36.000 0.00 0.00 0.00 2.40
860 954 3.490249 CCTGTGGTGCTGAATTATGCATG 60.490 47.826 10.16 0.00 41.45 4.06
971 1065 7.110155 CCAGATAAGTGTACATTTTACAGGGT 58.890 38.462 9.05 0.00 0.00 4.34
979 1073 5.530171 TGTACATTTTACAGGGTGCGTTTTA 59.470 36.000 0.00 0.00 0.00 1.52
1032 1126 1.673009 CAAGCTTTTCCCGGCCGTA 60.673 57.895 26.12 9.16 0.00 4.02
1082 1176 2.643933 GGTAAGTACCGTTTCGCTCT 57.356 50.000 0.00 0.00 36.50 4.09
1089 1183 1.082104 CCGTTTCGCTCTTGTTGCC 60.082 57.895 0.00 0.00 0.00 4.52
1128 1222 8.776470 TGTAAACATGCATATGATATCAGTGTG 58.224 33.333 11.78 10.30 37.73 3.82
1181 1275 9.168451 TGTTGATTAGTGTTCAAAGAACTAACA 57.832 29.630 10.79 7.84 38.76 2.41
1282 1376 4.077188 GCTGTGCTTCGTGTCCGC 62.077 66.667 0.00 0.00 0.00 5.54
1429 1523 7.693952 TGGCGACAATTATGAACTTATTCTTC 58.306 34.615 0.00 0.00 37.44 2.87
1446 1540 5.957842 TTCTTCGCATGGTTTGAATTACT 57.042 34.783 0.00 0.00 0.00 2.24
1460 1554 8.898792 GGTTTGAATTACTTTTGTTCGTATGTC 58.101 33.333 0.00 0.00 0.00 3.06
1486 1580 2.029964 TTCCAGGTTCACCGCGAC 59.970 61.111 8.23 0.00 42.08 5.19
1521 1615 6.145534 GGGTTCGAATGAAGGAAAATGTTTTC 59.854 38.462 0.00 9.22 44.38 2.29
1612 1707 5.805728 TCCCTGTATTTGTCTCTTCTTTCC 58.194 41.667 0.00 0.00 0.00 3.13
1628 1723 4.162690 CCGGGTGTGCCTAGCTCC 62.163 72.222 0.00 0.00 34.45 4.70
1635 1730 3.231818 GGTGTGCCTAGCTCCTATCTAA 58.768 50.000 0.00 0.00 0.00 2.10
1643 1738 5.392595 GCCTAGCTCCTATCTAAATGAGACG 60.393 48.000 0.00 0.00 36.87 4.18
1694 1789 9.187996 TGCCATTTGATTTTACATAGAGATTCA 57.812 29.630 0.00 0.00 0.00 2.57
1738 1833 8.802267 TCCTTTTTCTTCGATTAATCAAATGGT 58.198 29.630 15.57 0.00 0.00 3.55
1760 1855 5.163754 GGTGTACAAGTTAGATGGACATTGC 60.164 44.000 0.00 0.00 43.21 3.56
1814 1909 9.790389 AATCCGCTTCTTTATATATAGAAGTCG 57.210 33.333 28.70 28.29 45.79 4.18
1815 1910 7.249147 TCCGCTTCTTTATATATAGAAGTCGC 58.751 38.462 28.70 20.52 45.79 5.19
1816 1911 6.472808 CCGCTTCTTTATATATAGAAGTCGCC 59.527 42.308 28.70 18.24 45.79 5.54
1817 1912 6.472808 CGCTTCTTTATATATAGAAGTCGCCC 59.527 42.308 28.70 18.00 45.79 6.13
1818 1913 6.472808 GCTTCTTTATATATAGAAGTCGCCCG 59.527 42.308 28.70 13.87 45.79 6.13
1819 1914 6.446781 TCTTTATATATAGAAGTCGCCCGG 57.553 41.667 0.00 0.00 0.00 5.73
1820 1915 6.182627 TCTTTATATATAGAAGTCGCCCGGA 58.817 40.000 0.73 0.00 0.00 5.14
1821 1916 5.824904 TTATATATAGAAGTCGCCCGGAC 57.175 43.478 0.73 0.00 46.45 4.79
1828 1923 3.450115 GTCGCCCGGACTAGCAGT 61.450 66.667 0.73 0.00 42.62 4.40
1829 1924 2.678934 TCGCCCGGACTAGCAGTT 60.679 61.111 0.73 0.00 0.00 3.16
1830 1925 2.264794 CGCCCGGACTAGCAGTTT 59.735 61.111 0.73 0.00 0.00 2.66
1831 1926 2.100631 CGCCCGGACTAGCAGTTTG 61.101 63.158 0.73 0.00 0.00 2.93
1832 1927 1.003718 GCCCGGACTAGCAGTTTGT 60.004 57.895 0.73 0.00 0.00 2.83
1833 1928 0.248289 GCCCGGACTAGCAGTTTGTA 59.752 55.000 0.73 0.00 0.00 2.41
1834 1929 1.739371 GCCCGGACTAGCAGTTTGTAG 60.739 57.143 0.73 0.00 0.00 2.74
1835 1930 1.549170 CCCGGACTAGCAGTTTGTAGT 59.451 52.381 0.73 0.00 31.97 2.73
1836 1931 2.756760 CCCGGACTAGCAGTTTGTAGTA 59.243 50.000 0.73 0.00 29.34 1.82
1837 1932 3.181489 CCCGGACTAGCAGTTTGTAGTAG 60.181 52.174 0.73 0.00 29.34 2.57
1908 2007 2.286365 AGCGGAACCAAATTTCAGGA 57.714 45.000 1.72 0.00 0.00 3.86
1912 2011 3.857010 GCGGAACCAAATTTCAGGAACAG 60.857 47.826 1.72 0.00 0.00 3.16
1923 2022 1.001974 TCAGGAACAGATGTCCAACCG 59.998 52.381 0.00 0.00 0.00 4.44
1966 2065 3.297134 TTTAGCCCAAGAATAGCTGGG 57.703 47.619 0.00 0.00 44.20 4.45
1972 2071 1.490490 CCAAGAATAGCTGGGCAGGTA 59.510 52.381 0.00 0.00 44.34 3.08
1984 2083 4.389374 CTGGGCAGGTATACGAATGAAAT 58.611 43.478 0.00 0.00 0.00 2.17
1985 2084 4.133820 TGGGCAGGTATACGAATGAAATG 58.866 43.478 0.00 0.00 0.00 2.32
1986 2085 4.141597 TGGGCAGGTATACGAATGAAATGA 60.142 41.667 0.00 0.00 0.00 2.57
2087 2186 0.445436 CAGCCGTTGATCTCTGTTGC 59.555 55.000 0.00 0.00 0.00 4.17
2094 2193 3.376234 CGTTGATCTCTGTTGCATCCAAT 59.624 43.478 0.00 0.00 32.75 3.16
2095 2194 4.669318 GTTGATCTCTGTTGCATCCAATG 58.331 43.478 0.00 0.00 32.75 2.82
2154 2253 2.370445 CCTAGCCACTCCACCCCTG 61.370 68.421 0.00 0.00 0.00 4.45
2155 2254 1.613630 CTAGCCACTCCACCCCTGT 60.614 63.158 0.00 0.00 0.00 4.00
2179 2278 1.672356 GTGGCAGCCATTCGTGAGT 60.672 57.895 19.75 0.00 35.28 3.41
2183 2282 1.230635 GCAGCCATTCGTGAGTGTGT 61.231 55.000 0.00 0.00 0.00 3.72
2193 2292 3.792401 TCGTGAGTGTGTGAGAAAACAT 58.208 40.909 0.00 0.00 31.49 2.71
2203 2302 5.991606 TGTGTGAGAAAACATACAAGAGAGG 59.008 40.000 0.00 0.00 38.52 3.69
2239 2341 6.657541 GTGAGAGAGAGGAAGAAGAAGTAGAA 59.342 42.308 0.00 0.00 0.00 2.10
2243 2345 7.393515 AGAGAGAGGAAGAAGAAGTAGAAGTTC 59.606 40.741 0.00 0.00 0.00 3.01
2262 2364 3.370840 TCTGCCCAGATTTGCTACATT 57.629 42.857 0.00 0.00 31.41 2.71
2306 2408 2.616842 GTGATTGGAGGTTCAAACGTGT 59.383 45.455 0.00 0.00 0.00 4.49
2318 2420 1.857837 CAAACGTGTTTGGATTGGCAC 59.142 47.619 15.89 0.00 44.47 5.01
2356 2458 9.959721 AGCTTATTCCTTACTTTGATTAGTTCA 57.040 29.630 0.00 0.00 0.00 3.18
2373 2475 9.384764 GATTAGTTCAATCTAGTTAGCTGGTTT 57.615 33.333 0.00 0.00 40.06 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 1.212375 CCTGGTGGGTGTGGATGATA 58.788 55.000 0.00 0.00 0.00 2.15
182 183 9.910267 TTTGTTCATCCATGGATATATATCAGG 57.090 33.333 26.87 18.59 34.40 3.86
512 516 2.558795 TCACTCTCCTTCGTCTTGGAAG 59.441 50.000 0.00 0.00 42.42 3.46
533 612 3.017581 GCAGGGGAGGGTCATGGT 61.018 66.667 0.00 0.00 0.00 3.55
534 613 3.016971 TGCAGGGGAGGGTCATGG 61.017 66.667 0.00 0.00 0.00 3.66
535 614 2.273449 GTGCAGGGGAGGGTCATG 59.727 66.667 0.00 0.00 0.00 3.07
536 615 3.402681 CGTGCAGGGGAGGGTCAT 61.403 66.667 0.00 0.00 0.00 3.06
537 616 4.631740 TCGTGCAGGGGAGGGTCA 62.632 66.667 6.56 0.00 0.00 4.02
538 617 4.083862 GTCGTGCAGGGGAGGGTC 62.084 72.222 6.56 0.00 0.00 4.46
639 733 4.939439 TCACCACATGTTCTCATCATGAAG 59.061 41.667 0.00 0.00 43.47 3.02
675 769 3.654143 TGCACCAGGAGCAGCCAT 61.654 61.111 7.60 0.00 40.02 4.40
727 821 0.393402 TCAGCACCACATGAGCATCC 60.393 55.000 0.00 0.00 0.00 3.51
739 833 3.788937 AGCAAATGCATAATTCAGCACC 58.211 40.909 8.28 0.00 44.49 5.01
781 875 1.419922 GCTTGTATGTGCACGACCG 59.580 57.895 13.13 7.83 0.00 4.79
818 912 7.332926 CCACAGGAAAATCTCGGATCAATATAG 59.667 40.741 0.00 0.00 0.00 1.31
835 929 3.193267 GCATAATTCAGCACCACAGGAAA 59.807 43.478 0.00 0.00 0.00 3.13
860 954 3.120199 GCCGCAATCACATATACATGGTC 60.120 47.826 0.00 0.00 36.39 4.02
971 1065 6.596106 TCCTTATTTGTATCTGCTAAAACGCA 59.404 34.615 0.00 0.00 38.40 5.24
979 1073 7.577303 TCCATTCTTCCTTATTTGTATCTGCT 58.423 34.615 0.00 0.00 0.00 4.24
1032 1126 1.765657 GAGCAGGAGGAGGATGGCT 60.766 63.158 0.00 0.00 0.00 4.75
1173 1267 5.627172 TGAATAAGCGCACATTGTTAGTTC 58.373 37.500 11.47 5.39 0.00 3.01
1181 1275 4.808558 ACAAACATGAATAAGCGCACATT 58.191 34.783 11.47 8.35 0.00 2.71
1282 1376 3.582120 ACACACCGGCGCAGTTTG 61.582 61.111 10.83 12.03 0.00 2.93
1302 1396 2.355115 GGTGAACCCCTCCGCATT 59.645 61.111 0.00 0.00 0.00 3.56
1303 1397 4.096003 CGGTGAACCCCTCCGCAT 62.096 66.667 0.00 0.00 43.70 4.73
1429 1523 6.523676 AACAAAAGTAATTCAAACCATGCG 57.476 33.333 0.00 0.00 0.00 4.73
1446 1540 8.500773 GGAACTTTATCAGACATACGAACAAAA 58.499 33.333 0.00 0.00 0.00 2.44
1460 1554 3.684788 CGGTGAACCTGGAACTTTATCAG 59.315 47.826 0.00 0.00 0.00 2.90
1486 1580 3.527533 TCATTCGAACCCAAGGATAACG 58.472 45.455 0.00 0.00 0.00 3.18
1533 1627 2.906691 TGGGCCACACATTTTCTTTG 57.093 45.000 0.00 0.00 0.00 2.77
1592 1687 4.631813 CCCGGAAAGAAGAGACAAATACAG 59.368 45.833 0.73 0.00 0.00 2.74
1593 1688 4.041198 ACCCGGAAAGAAGAGACAAATACA 59.959 41.667 0.73 0.00 0.00 2.29
1598 1693 1.766496 ACACCCGGAAAGAAGAGACAA 59.234 47.619 0.73 0.00 0.00 3.18
1600 1695 1.797025 CACACCCGGAAAGAAGAGAC 58.203 55.000 0.73 0.00 0.00 3.36
1612 1707 1.115930 ATAGGAGCTAGGCACACCCG 61.116 60.000 0.00 0.00 39.21 5.28
1661 1756 9.288576 CTATGTAAAATCAAATGGCATAGGAGA 57.711 33.333 0.00 0.00 33.99 3.71
1723 1818 9.702726 CTAACTTGTACACCATTTGATTAATCG 57.297 33.333 10.80 0.00 0.00 3.34
1738 1833 5.804639 AGCAATGTCCATCTAACTTGTACA 58.195 37.500 0.00 0.00 0.00 2.90
1776 1871 4.775236 AGAAGCGGATTTGCTAATTCTCT 58.225 39.130 0.00 0.00 46.60 3.10
1813 1908 2.100631 CAAACTGCTAGTCCGGGCG 61.101 63.158 0.00 0.00 0.00 6.13
1814 1909 0.248289 TACAAACTGCTAGTCCGGGC 59.752 55.000 0.00 0.00 0.00 6.13
1815 1910 1.549170 ACTACAAACTGCTAGTCCGGG 59.451 52.381 0.00 0.00 0.00 5.73
1816 1911 3.442977 ACTACTACAAACTGCTAGTCCGG 59.557 47.826 0.00 0.00 0.00 5.14
1817 1912 4.698583 ACTACTACAAACTGCTAGTCCG 57.301 45.455 0.00 0.00 0.00 4.79
1818 1913 7.725818 AAAAACTACTACAAACTGCTAGTCC 57.274 36.000 0.00 0.00 0.00 3.85
1849 1946 7.446931 TCTGATAGTTCATCTACAGTGAGATCC 59.553 40.741 0.00 0.00 33.75 3.36
1853 1950 7.566760 ACTCTGATAGTTCATCTACAGTGAG 57.433 40.000 0.00 0.00 33.35 3.51
1899 1998 4.524328 GGTTGGACATCTGTTCCTGAAATT 59.476 41.667 0.00 0.00 0.00 1.82
1905 2004 0.324943 CCGGTTGGACATCTGTTCCT 59.675 55.000 0.00 0.00 37.49 3.36
1908 2007 0.762418 TGACCGGTTGGACATCTGTT 59.238 50.000 9.42 0.00 34.93 3.16
1912 2011 1.305930 GGCTTGACCGGTTGGACATC 61.306 60.000 9.42 0.00 39.66 3.06
1923 2022 6.705863 ATCTTCTCAATTATTGGCTTGACC 57.294 37.500 5.02 0.00 39.84 4.02
1966 2065 6.425114 ACATCTCATTTCATTCGTATACCTGC 59.575 38.462 0.00 0.00 0.00 4.85
1972 2071 9.770097 ACTATTCACATCTCATTTCATTCGTAT 57.230 29.630 0.00 0.00 0.00 3.06
1984 2083 4.908601 ACCCAACACTATTCACATCTCA 57.091 40.909 0.00 0.00 0.00 3.27
1985 2084 6.879458 ACTTAACCCAACACTATTCACATCTC 59.121 38.462 0.00 0.00 0.00 2.75
1986 2085 6.779860 ACTTAACCCAACACTATTCACATCT 58.220 36.000 0.00 0.00 0.00 2.90
2081 2180 4.082408 ACTCACAATCATTGGATGCAACAG 60.082 41.667 0.12 0.00 32.92 3.16
2087 2186 4.439700 GGAAGCACTCACAATCATTGGATG 60.440 45.833 1.58 0.00 32.92 3.51
2094 2193 3.578282 TCACTAGGAAGCACTCACAATCA 59.422 43.478 0.00 0.00 0.00 2.57
2095 2194 4.193826 TCACTAGGAAGCACTCACAATC 57.806 45.455 0.00 0.00 0.00 2.67
2123 2222 4.426704 AGTGGCTAGGGTTTTCTTCTCTA 58.573 43.478 0.00 0.00 0.00 2.43
2125 2224 3.601435 GAGTGGCTAGGGTTTTCTTCTC 58.399 50.000 0.00 0.00 0.00 2.87
2154 2253 2.158561 GAATGGCTGCCACCACCAAC 62.159 60.000 25.99 6.65 44.17 3.77
2155 2254 1.907807 GAATGGCTGCCACCACCAA 60.908 57.895 25.99 0.00 44.17 3.67
2179 2278 5.991606 CCTCTCTTGTATGTTTTCTCACACA 59.008 40.000 0.00 0.00 0.00 3.72
2183 2282 6.706270 GTGTTCCTCTCTTGTATGTTTTCTCA 59.294 38.462 0.00 0.00 0.00 3.27
2193 2292 3.709653 ACAGGTTGTGTTCCTCTCTTGTA 59.290 43.478 0.00 0.00 34.94 2.41
2239 2341 2.040278 TGTAGCAAATCTGGGCAGAACT 59.960 45.455 0.00 0.00 41.36 3.01
2243 2345 3.444742 TCAAATGTAGCAAATCTGGGCAG 59.555 43.478 0.00 0.00 0.00 4.85
2262 2364 5.246203 ACCAGCTTGAACACTATCTAGTCAA 59.754 40.000 0.00 0.00 33.46 3.18
2323 2425 6.655003 TCAAAGTAAGGAATAAGCTCACCAAG 59.345 38.462 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.