>input_sequence_82249
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-----------------------------------------------------ATGGAGTCATCACACAAGCTTTTCCCG
GCCGTAGCCATCCTCCTCCTGCTCGTCGTCGCCACCGGTAAGTACCGTTTCGCTCTTGTTGCCAGAACAACACCATGTAA
ACATGCATATGATATCAGTGTGCTCCAATTCTTGGGTTGGTTTATTATTGTTGATTAGTGTTCAAAGAACTAACAATGTG
CGCTTATTCATGTTTGTCTTCAGAGGTGGTGCCAGCGCAGGCACGAGAGTGTGAGACAGAGAGCGAGCGGTTCAACGGGC
TGTGCTTCGTGTCCGCAAACTGCGCCGGTGTGTGCAATGCGGAGGGGTTCACCGGTGGCAAGTGCTCCGGCTTGAAGAGG
AGCTGCATGTGCACGAAGGAGTGCTAG-----------------------------------------------------
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>chr2B_1_TraesCS2B01G062000
TTTCCGGCGCGACCGATGCAGGAGGTGCAAGCAATAATGCTGAAATATCAAATGCTAAAACTACTGCTGCCACGGAGTCC
CACCGTGACGTCTCATGGGATCAGTTCCGTGGTATTATCATCCACACCCACCAGGTCAAGAAACCATAATGATGAACTAA
GACAAACGACCATGGGCACCAACCTGATATATATCCATGGATGAACAAATTATCAAGTTGGCAATTTCTACACTAAGATG
TGGATTCTCTGTTATATATGTGTGTGTAATATAATATGGAACTGATATATTGTAAGACTTGGATGGTATGTT-GGATTAT
CAAGCTACTTATTGCTGTACTAATTACTGTACATGGTATTGTACTATACACTGCAGAATAAACATGCCCACGGTCCATGG
TAATGCCCACTATTTATAATTATATCTTCCATGTGATTCCATGTCGTTCTACAAGTAGAACTACTTTCCAGTACTAGTAG
ACAAATC--TATATAGTGTCTCAAGCTTGTTTTTAC--------------------------------------------
-------------------------------TTCCAAGACGAAGGAGAGTGACCATGA--------------CCCTCCCC
TGCACGACCAACCACAAATTAGACGCCCACAA-AAAAATTCAACCTAGCAATCAGGCCCATTATTAGTAGTCTGTTAGCC
TAAAAATTGTAGCTTCATGATGAGAACATGTGGTGACAGCAGGGGGTCATGGCTGCTCCTGGTGCACAGCTATTATTAGA
TAGTTGCACATATAGGTGTGGGATGCTCATGTGGTGCTGAATTATGCATTTGCTTGCATGTCATCAGCATTGTGCGGTCG
TGCACATACAAGCCCGTTATTAGTAAGTTCCCTATATTGATCCGAGATTTTCCTGTGGTGCTGAATTATGCATGACCATG
TATATGTGATTGCGGCTGCGCGCGTATATAAGCATGTCACAAGCATCGATCCTAACTTGTCATTCAGAGTTTTACAATCC
CAGATAAGTGTACATTTTACAGGGTGCGTTTTAGCAGATACAAATAAGGAAGAATGGAGTCATCACACAAGCTTTTCCCG
GCCGTAGCCATCCTCCTCCTGCTCGTCGTCGCCACCGGTAAGTACCGTTTCGCTCTTGTTGCCAGAACAACACCATGTAA
ACATGCATATGATATCAGTGTGCTCCAATTCTTGGGTTGGTTTATTATTGTTGATTAGTGTTCAAAGAACTAACAATGTG
CGCTTATTCATGTTTGTCTTCAGAGGTGGTGCCAGCGCAGGCACGAGAGTGTGAGACAGAGAGCGAGCGGTTCAACGGGC
TGTGCTTCGTGTCCGCAAACTGCGCCGGTGTGTGCAATGCGGAGGGGTTCACCGGTGGCAAGTGCTCCGGCTTGAAGAGG
AGCTGCATGTGCACGAAGGAGTGCTAGACGATATCATGATATATTTAGGTGGTTGGATGGCGACAATTATGAACTTATTC
TTCGCATGGTTTGAATTACTTTTGTTCGTATGTCTGATAAAGTTCCAGGTTCACCGCGACGTTATCCTTGGGTTCGAATG
AAGGAAAATGTTTTCTTTCTTTAAAGCAAAGAAAATGTGTGGCCCATGAGAGTGTTCATGGAATCACATGTATCTCCTTT
TTT-CCCTGTATTTGTCTCTTCTTTCCGGGTGTGCCTAGCTCCTATCTAAATGAGACGTAACTAAGTATCATCTATCTCC
TATGCCATTTGATTTTACATAGAGATTCATGAATACTTTTTTCCTTTCCTTTTTCTTCGATTAATCAAATGGTGTACAAG
TTAGATGGACATTGCTAATTCTCATCTAGAAGAGAATTAGCAAATCCGCTTCTTTATATATAGAAGTCGCCCGGACTAGC
AGTTTGTAGTAGTTTTTT--TAGATGGATCTCACTGTAGATGAACTATCAGAGTTTTG--TTTTTTTAGCGGAACCAAAT
TTCAGGAACAGATGTCCAACCGGTCAAGCCAATAATTGAGAAGATTTAGCCCAAGAATAGCTGGGCAGGTATACGAATGA
AATGAGATGTGAATAGTGTTGGGTTAAGTCCCTCCACATGGAGGTGTGTTGGAAGCCCAACATCAGCCCATAAGTCTAAC
ACACGTCAGCCGTTGATCTCTGTTGCATCCAATGATTGTGAGTGCTTCCTAGTGAAGGGGGTAGAGAAGAAAACCCTAGC
CACTCCACCCCTGTTGGTGGTGGCAGCCATTCGTGAGTGTGTGAGAAAACATACAAGAGAGGAACACAACCTGTGAGAGA
GAGGAAGAAGAA---GTAGAAGTTCTGCCCAGATTTGCTACATTTGACTAGATAGTGTTCAAGCTGGTGATTGGAGGTTC
AAACGTGTTTGGATTGGCACCAAACTTGGTGAGCTTATTCCTTACTTTGATTAGTTCAATCTAGTTAGCTGGTTT
>chr2A_1
TTTCCGGCGCGACCGATGCAGGAGGTGCAAGCAATAATGCTGAAATATCAAATGCTAAAACTACTGCTGCCACGGAGTCC
CACCGTGACGTCTCATGGGATCAGTTCCGTGGTATCATCATCCACACCCACCAGGTCAAGAAACCATAATGATGAACTAA
GACAAACGACCATGGGCACCAATCTGATATATATCCATGGATGAACAAATTATCAAGTTGGCAATTTCTACACTAAGATG
TGGGTTCTCTGTTATATATGTGTGTGTAATATAATATGGAACTGATATATTGTAAGACTTGGATGGTATGTTTGGATTAT
CAAGCTACTTATTGCTGTACTAATTATTGTACATGGTATTGTACTATACACTGCAGAATAAACATGCCCACGGTCCATGG
TAATGCCCACTATTTATAATTATATCTTCCATGTGATTCCATGTCGTTCTACAAGTAGAACTACTTTCCAGTACTAGTAG
ACAAATC--TATATAGTGTCTCAAGCTTGTTTTTATCAGTAATATCTGAATTTTAAGGTTAAAGTTGGTCTCTATTATCT
GTACATGTATAGTACAGAAATGTTACATATTTTCCAAGACGAAGGAGAGTGGGGTACACAAACTGACCATGGCCCTCCCC
AGCACGACCAACCACAAATTAGATGCCCACAAAAAAAATTCAACCTAGCAATCAGGCCCATTATTAGTAGTCTGTTAGCC
TAAAAATTGTAGTTTCATGATGAGAACATGTGGTGACAGCAGGGGGTCGTGGCTGCTCCTGGTGCACAGCTATTATTAGG
TAGTTGCACATATAGGTGTGAGATGCTCATGTCGTGCGGAATTATGCATTTGCTTGCATGTCATCAGCGTTGTGTGGTCG
TGCACATACAAGCCTGTTATTAGTATGTTCCATATATTGATCCGAGATGTTCCTGTGGTGCTGAATTATGCATCACCATG
TATATGTGATTGCGGCTGCGCGCGTATATAAGCATGTCTCAAGCATCGATCCTAACTTGTCATTCAGAGTTTTGCAATCC
AAGATAAGTGTACATTTTACAGGGCGCGTTTTGGCAGATACAAATAAGGAAGAATGGAGTCATCACACAAGCTTTTCCCG
GCCGTTGCCATCCTCCTCCTGCTCGTCGTCGCCACCGGTAAGTACCATTTCGCTCCTGTTGCGAGAACAAAACAATGTAA
ACATGCATATGATATTAGTGTCCTCCAATTCTTGGGTTGGTTTATTATTGTTGATTAGTGTTCAAAAAACTAACCATGTG
CGCTTATTCATGTTTGTCTTCAGAGGTGGTGCCAGCCCAGGCACGAGAGTGTGAGACAGAGAGCGAGCGGTTCAACGGGC
TGTGCTTCGTGTCCGAAAACTGCGCCGGCGTGTGCGGTGCGGAGGGGTTCACCGGCGGCAAGTGCTCCGGCTTGAAGAGG
AGCTGCATGTGCACGAAGGAGTGCTAGACGATATCATGATATATTTAGGTGGTTGGATGGCGACAATTATGAACTTATTC
TTTGCATGGTTTGAATTACCTTTGTTCGTATGTTTGATAAAGTTCCAGGTTCACCGCGATGTTATCCTTGTGTTCGAATG
AAGGAAAATGTTTTGTTTCTTTAAAGAAAAGAAAATGTGTGGCCCCTGAGAGTGTTCATGGGATCACATGTATCTCCTTT
TTT-CC--GTATGTTTCTCTTCTTTCTGGGTGTGCCTAGCTCTTATCTAGATGAGACATAACTAAGTATCATCTAACTCC
TATGCCATTTGATTTTACATAGAGATTCGTGAAGA-TTTTTTCCTTTCCTTTTTCTTTGATTAATCAAATGGGGTACAAG
TTAGATGGACATTGTTAATTCTCATCTAGACGAGAATTAGCAAATCCGCTTCTTTATATATAGAAGTT------------
------------TTTTTT--GAGATAGATTTCACTGTAGCTGAACTATCAGAGTTTTGATTTTTTTTAGCGGAACCAGAT
TTCGGGTACGAATGTCCAACCAGTCAAGCCAATAATTGAGAAGATTTAGCCCAAGAATAGCTGGACAGGTCTACGAATGA
AACATGATGTGAATAGTGTTGGGTTAAGTCCCTCCACATGGAGGTGTGTTGGAAGCCTAACATCAGCCCATAAGTCTAAC
ACACGTCAGCCGTTGATCTTTGTTGGATCCAACAATTGTGAGTGCTTCCTAGTGAAGGGGGCAAAGAAGAAAACCCTAGC
CACTCCACCCCTTCTGGTGGTGGCAGCCATTCGTGAGAGTGCGAGAAAACACACAAGAGAGAAACACAACCTGTGAGAGA
GAGGAAGAAGAAGAAGTAGAGGTTTTGCCCAGATTTGCTACATCTGACTAGATAGTGTTCAAGCTGGTGATTGGAGGTTC
AAACGTGCTTGGACTGGCATCAAAATTGGTGAGCTTATTCCTTACTTTGATTAGTTCGATCTAGTTAGCTGGTT-
>chr2D_1
TTTCCGGCGCAACCGATGCAGGAGGTGCAAGCAATAATGCTGAAATATCAAATGCTAAAACTACTGCTGCCACGGAGTCC
CACCGTGACGTCTCATGGGATCAGTTCCGTGGTATCATCATCCACACCCACCAGGTCAAGAAACCATAATGATGAACTAA
GACAAACGACCATGGGCACCAATCTGATATATATCCATGGATGAACAAATTATCAAGTTGGCAATTTCTACACTAAGATG
TGGGTTCTCTGTTATATATGTGTGTGTAATATAATATGGAACTGATATATTCTAAGACTTGGATGGTATGTTTGGATTAT
CAAGCTACTTATTGCTGTACTAATTATTGTACATGGTATTGTACTATACACTGCAGAATAAACATGCCCACGGTCCATGG
TAATGCCCACTATTTATAATTATATCTTCCATGCGATTCCATGTCGTTCTATAAGTAGAACTACTTTCCAGTACTAGTAG
ACAAATC--TATA--GTGTCTCAAGCTTGTTTTTATCAGTAATATCTGAATTTTAAGGTTAAAGTTGGTCTCTATTATCT
GTACACGTATAGTACAGAAATGTTACATATTTTCCAAGACGAAGGAGAGTGGGGTACACAAACTGACCATGGCCCTCCCT
TGCACGACCAACCACAAATTAGATGCCCACAAAAAAAATTCAACCTAGCAATCAGGCCCATTATTAGTAGTCTGTTAGCC
TAAAAATTGTAGTTTCATGATGAGAACATGTGGTGACAGCAGGGGGTCGTGGCTGCTCCTGGTGCACAGCTATTATTAGG
TAGTTGCACATATAGGTGTGAGATGCTCATGTCGTGCTGAATTATGCATTTGCTTGCATGTCATCAGCGTTGTGTGGTCG
TGCACATACAAGCCTGTTATTAGTATGTTCCATATATTGATCCGAGATGTTCCTGTGGTGCTGAATTATGCATCACCATG
TATATGTGATTGCGGCTGCGCGCTTATATAAGCATGTCACAAGCATCGATCCTAACTTGTCATTCAGAGTTTTACAATCC
CAGATAAGTGTACATTTTACAGGGCGCGTTTTGGCAGATACAAATAAGGAAGAATGGAGTCATCACACAAGCTTTTCCCG
GCCGTTGCCATCCTCCTCCTGCTCGTCGTCGCCACCGGTAAGTACCATTTCGCTCCTGTTGCGAGAACAAAACAATGTAA
ACATGCATATGATATTAGTGTCCTCCAATTCTTGGGTTGGTTTATTATTGTTGATTGGTGTTCAAAAAACTAACCATGTG
CGCTTATTCATGTTTGTCTTCAGAGGTGGTGCCAGCGCAGGCACGAGAGTGTGAGACAGAGAGCGAGCGGTTCAACGGGC
TGTGCTTCGTGTCCGAAAACTGCGCCGGTGTGTGCGGTGCGGAGGGGTTCACCGGTGGCAAGTGCTCCGGCTTGAAGAGG
AGGTGCATGTGCACGAAGGAGTGCTAGACGATATCATGATATATTTAGGTGGTTGGACGGCGACAATTATGAACTTATTC
TTTGCATGGTTTGAATTACCTTTGTTCGTATGTTTGATAAAGTTCCAGGTTCACCGCGATGTTATCCTTGGGTTCGAATG
AAGGAAAATGTTTTGTTTCTTTAAAGAAAAGAAAATGTGTGGCCCATGAGAGTGTTCATGGGATCACATGTATCTCCTTT
TTTTCC--GTATGTTTCTCTTCTTTCTGGGTGTGCCTAGCTCTTATCTAGATGAGACATAACTAAGTACCATCTAACTCC
TATGCCATTTGATTTTACATAAAGATTCGTGAAGA-TTTTTTCCTTTCCTTTTTCTTTGATTAATCAAATGGGGTACAAG
TTAGATGGACATTGTTAATTCTCGTCTAGACGAGAATTAGCAAATCCGTTTCTTTATATATAGAAGTT------------
------------TTTTTTTTGAGATAGATTTCACTGTAGCTGAACTATCAGAGTTTTGAT-TTTTTTAGCGGAACCAGAT
TTCGGGTACAAATGTCCAACTAGTCAAGCCAATAATTGAGAAGATTTAGCCCAAGAATAGCTGGACAGGTCTACGAATGA
AACAGGATGTGAATAGTGTTGGGTTAAGTCCCTCCACATGGAGGTGTGTTGGAAGCCCAACATCAGCCCATAAGTCTAAC
ACACGTCAGCCGTTGATCTTGTTG--------------------------------------------------------
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>chr2D_1
TTTCCGGCGCAACCGATGCAGGAGGTGCAAGCAATAATGCTGAAATATCAAATGCTAAAACTACTGCTGCCACGGAGTCC
CACCGTGACGTCTCATGGGATCAGTTCCGTGGTATCATCATCCACACCCACCAGGTCAAGAAACCATAATGATGAACTAA
GACAAACGACCATGGGCACCAATCTGATATATATCCATGGATGAACAAATTATCAAGTTGGCAATTTCTACACTAAGATG
TGGGTTCTCTGTTATATATGTGTGTGTAATATAATATGGAACTGATATATTCTAAGACTTGGATGGTATGTTTGGAGTAT
CAAGCTACTTATTGCTGTACTAATTATTGTACATGGTATTGTACTATACACTGCAGAATAAACATGCCCACGGTCCATGG
TAATGCCCACTATTTATAATTATATCTTCCATGCGATTCCATGTCGTTCTATAAGTAGAACTACTTTCCAGTACTAGTAG
AATAATCTATATA--GTGTCTCAAGCTTGTTTTTATCAGTAATATCTGAATTTTAAGGTTAAAGTTGGTCTCTATTATCT
GTACACGTATAGTACAGAAATGTTACATATTTTCCAAGACGAAGGAGAGTGGGGTACACAAACTGACCATGGCCCTCCCC
TGCACGACCAACCACAAATTAGATGCCCACAAAAAAAATTCAACCTAGCAATCAGGCCCATTATTAGTAGTCTGTTAGCC
TAAAAATTGTAGTTTCATGATGAGAACATGTGGTGACAGCAGGGGGTCGTGGCTGCTCCTGGTGCACAGCTATTATTAGG
TAGTTGCACATATAGGTGTGAGATGCTCATGTCGTGCTGAATTATGCATTTGCTTGCATGTCATCAGCGTTGTCTGGTCG
TGCACATACAAGCCTGTTATTAGTATGTTCCATATATTGATCCGAGATGTTCCTGTGGTGCTGAATTATGCATCACCATG
TATATGTGATTGCGGCTGCGCGCGTATATAAGCATG-CACAAGCATCGATCCTAACTTGTCATTCAGAGTTTTACAATCC
CAGATAAGTGTACATTTTACAGGGCGCGTTTTGGCAGATACAAATAAGGAAGAATGGAGTCATCACACAAGCTTTTCCCG
GCCGTTGCCATCCTCCTCCTGCTCGTCGTCGCCACCGGTAAGTACCATTTCGCTCCTGTTGCGAGAACAAAACAATGTAA
ACATGCATATGATATTAGTGTCCTCCAATTCTTGGGTTGGTTTATTATTGTTGATTGGTGTTCAAAAAACTAACCATGTG
CGCTTATTCATGTTTGTCTTCAGAGGTGGCGCCAGCGCAGGCACGAGAGTGTGAGACAGAGAGCGAGCGGTTCAACGGGC
TGTGCTTCGTGTCCGAAAACTGCGCCGGTGTGTGCGTTGCGGAGGGGTTCACCGGTGGCAAGTGCTCCGGCTTGAAGAGG
AGGTGCATGTGCACGAAGGAGTGCTAGACGATATCATGATATATTTAGGTGGTTGGACGGCGACAATTATGAACTTATTC
TTTGCATGGTTTGAATTACCTTTGTTCGTATGTTTGATAAAGTTCCAGGTTCACCGCGATGTTATCCTTGGGTTCGAATG
AAGGAAAATGTTTTGTTTCTTTAAAGAAAAGAAAATGTGTGGCCCATGAGAGTGTTCATGGGATCACATGTATCTCCTTT
TTTTCC--GTATGTTTCTCTTCTTTCTGGGTGTGCCTAGCTCTTATCTAGATGAGACATAACTAAGTACCATCTAACTCC
TATGCCATTTGATTTTACATAAAGATTCGTGAAGA-TTTTTTCCTTTCCTTTTTCTTTGATTAATCAAATGGGGTACAAG
TTAGATGGACATTGTTAATTCTCGTCTAGATGAGAATTAGCAAATCCGTTTCTTTATATATAGAAGTT------------
------------TTT--T--TAGATAGATTTCACTGTAGCTGAACTATCAGAGTTTTGAT-TTTTTTAGCGGAACCAGAT
TTCGGGTACAAATGTCCAACTAGTCAAGCCACTAATTGAGAAGATTTAGCCCAAGAATAGCTGGACAGGTCTACGAATGA
AACAGGATGTGAATAGTGTTGGGTTAAGTCCCTCCACATGGAGGTGTGTTGGAAGCCCAACATCAGCCCATAAGTCTAAC
ACACGTCAGCCGTTGATCTTGTTG--------------------------------------------------------
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>SNPs
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-----------------------------------S--------------------------------------------
----------------------S---------------------------------------------------------
---S----------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
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-----------------------------------S--------------------------------------------
---------------------------------------------------SSSSSS-----------------------
-----------------------S--------------------------------------------------------
------------S-----------------------------------S------------------------------S
--------------------S-----------S-----------------------------------S-----S-----
--------------S----------S-----S----------------S------------------------S------
--------------------------------------------------------------------------------
------------------------S-------S-----------------------------------------------
-----S----------------------------------------S--------S------S-------S--S------
---------------S-----S--------------------------------------------S-------S-----
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---------------S-------------------SS-------------------------------------------
--------------------------------------------------------------------------------
--S----------------S-------------S-------------------------S--------------------
--------------S-----------S----------------------------------S------------------
------SS----S-S-----------S---------------S------S-------S-----------------S----
----------------------------S----S-S---------------------S--------------S-------
--------------S---------------S------------------------------------SSSSSSSSSSSSS
SSSSSSSSSSSS-------------S---S---------S-------------------------------------S--
---S--S---S----------S------------------------------------------S-----S---------
--SSS---------------------------------------------------------------------------
-------------------S-----S------SS---------------------------S-S----------------
------------SS-----------------------S---S---------S---------S------------------
--------------------S---S------------------S------------------------------------
-------S-----S-----S----S--------------------------------S----------------S
>forward_833
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-------------AGGTGTGGGATGCTCATGTG-----------------------------------------------
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>reverse_1909
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--------------------------------------------------------------------GCCCGGACTAGC
AGTTTGTA------------------------------------------------------------------------
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