Multiple sequence alignment - TraesCS2B01G051400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G051400 chr2B 100.000 2649 0 0 1 2649 25187522 25184874 0.000000e+00 4892.0
1 TraesCS2B01G051400 chr2D 91.642 2010 121 25 660 2649 13839292 13837310 0.000000e+00 2737.0
2 TraesCS2B01G051400 chr2D 84.017 463 54 13 1505 1956 13813405 13812952 6.780000e-116 427.0
3 TraesCS2B01G051400 chr2D 93.452 168 6 4 268 434 373883437 373883600 7.320000e-61 244.0
4 TraesCS2B01G051400 chr2A 90.736 1263 48 30 659 1874 16026096 16024856 0.000000e+00 1620.0
5 TraesCS2B01G051400 chr2A 91.358 243 16 4 1631 1872 16014884 16014646 7.070000e-86 327.0
6 TraesCS2B01G051400 chr2A 81.416 113 14 7 2044 2154 200360220 200360327 4.700000e-13 86.1
7 TraesCS2B01G051400 chr5D 88.163 245 16 9 1 233 551732926 551733169 2.010000e-71 279.0
8 TraesCS2B01G051400 chr5D 89.130 230 15 2 13 233 294614165 294614393 7.220000e-71 278.0
9 TraesCS2B01G051400 chr5D 87.149 249 17 6 1 240 494233247 494233489 4.350000e-68 268.0
10 TraesCS2B01G051400 chr5D 83.696 92 10 4 2052 2140 456679822 456679911 6.080000e-12 82.4
11 TraesCS2B01G051400 chr5D 76.786 112 18 7 1982 2092 24128807 24128911 3.680000e-04 56.5
12 TraesCS2B01G051400 chr3D 87.500 240 19 3 13 242 55785229 55785467 1.560000e-67 267.0
13 TraesCS2B01G051400 chr7D 87.879 231 16 6 13 233 611342733 611342505 7.270000e-66 261.0
14 TraesCS2B01G051400 chr7D 94.479 163 8 1 266 428 183790423 183790262 1.570000e-62 250.0
15 TraesCS2B01G051400 chr3A 87.773 229 17 5 15 233 222048766 222048993 9.410000e-65 257.0
16 TraesCS2B01G051400 chr3A 92.814 167 10 2 266 431 600923240 600923075 9.470000e-60 241.0
17 TraesCS2B01G051400 chr3A 91.860 172 12 2 257 428 585298150 585297981 3.410000e-59 239.0
18 TraesCS2B01G051400 chr1D 86.290 248 18 9 1 233 48876134 48875888 3.380000e-64 255.0
19 TraesCS2B01G051400 chr1D 85.106 235 20 4 13 233 442679972 442680205 2.650000e-55 226.0
20 TraesCS2B01G051400 chr5A 93.865 163 9 1 266 428 320214244 320214405 7.320000e-61 244.0
21 TraesCS2B01G051400 chr1A 93.373 166 10 1 263 428 181769424 181769588 7.320000e-61 244.0
22 TraesCS2B01G051400 chr6D 91.908 173 12 2 260 431 90112406 90112235 9.470000e-60 241.0
23 TraesCS2B01G051400 chr6D 80.702 171 17 13 1995 2159 367774386 367774226 4.630000e-23 119.0
24 TraesCS2B01G051400 chr6B 91.525 177 12 3 266 440 226361679 226361504 9.470000e-60 241.0
25 TraesCS2B01G051400 chr6A 92.353 170 11 2 260 428 108947696 108947864 9.470000e-60 241.0
26 TraesCS2B01G051400 chr6A 78.992 238 33 13 1984 2212 448154637 448154866 2.120000e-31 147.0
27 TraesCS2B01G051400 chr6A 81.395 129 18 6 2064 2186 508279873 508279745 1.680000e-17 100.0
28 TraesCS2B01G051400 chr4A 81.651 218 26 10 13 226 651566202 651566409 4.530000e-38 169.0
29 TraesCS2B01G051400 chr7A 77.366 243 41 12 1976 2216 55347726 55347496 5.950000e-27 132.0
30 TraesCS2B01G051400 chr7B 86.667 60 6 2 2052 2109 595688502 595688561 6.120000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G051400 chr2B 25184874 25187522 2648 True 4892 4892 100.000 1 2649 1 chr2B.!!$R1 2648
1 TraesCS2B01G051400 chr2D 13837310 13839292 1982 True 2737 2737 91.642 660 2649 1 chr2D.!!$R2 1989
2 TraesCS2B01G051400 chr2A 16024856 16026096 1240 True 1620 1620 90.736 659 1874 1 chr2A.!!$R2 1215

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 163 0.030501 TTACGGGATCAGGTGGGGAT 60.031 55.0 0.00 0.0 0.0 3.85 F
164 165 0.030501 ACGGGATCAGGTGGGGATAA 60.031 55.0 0.00 0.0 0.0 1.75 F
699 701 0.179070 GCTGGGCTACTGCTTACTCC 60.179 60.0 4.18 0.0 40.5 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1553 1588 0.807667 CTGAAGAAGCCACCGATCGG 60.808 60.000 32.2 32.2 42.03 4.18 R
1556 1595 1.078143 GCCTGAAGAAGCCACCGAT 60.078 57.895 0.0 0.0 0.00 4.18 R
2477 2540 0.666374 GTGGGGGTGTCGAAGTTTTG 59.334 55.000 0.0 0.0 0.00 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.787085 TTTCTTTCGTTGAGAAGAAGGATC 57.213 37.500 0.00 0.00 40.40 3.36
24 25 4.822026 TCTTTCGTTGAGAAGAAGGATCC 58.178 43.478 2.48 2.48 40.40 3.36
25 26 3.611766 TTCGTTGAGAAGAAGGATCCC 57.388 47.619 8.55 0.00 34.26 3.85
26 27 2.821437 TCGTTGAGAAGAAGGATCCCT 58.179 47.619 8.55 0.00 33.87 4.20
27 28 2.497675 TCGTTGAGAAGAAGGATCCCTG 59.502 50.000 8.55 0.00 32.13 4.45
28 29 2.234908 CGTTGAGAAGAAGGATCCCTGT 59.765 50.000 8.55 0.00 32.13 4.00
29 30 3.604582 GTTGAGAAGAAGGATCCCTGTG 58.395 50.000 8.55 0.00 32.13 3.66
30 31 2.191400 TGAGAAGAAGGATCCCTGTGG 58.809 52.381 8.55 0.00 32.13 4.17
32 33 2.433970 GAGAAGAAGGATCCCTGTGGAG 59.566 54.545 8.55 0.00 46.08 3.86
33 34 2.045047 AGAAGAAGGATCCCTGTGGAGA 59.955 50.000 8.55 0.00 46.08 3.71
34 35 2.649742 AGAAGGATCCCTGTGGAGAA 57.350 50.000 8.55 0.00 46.08 2.87
35 36 2.476199 AGAAGGATCCCTGTGGAGAAG 58.524 52.381 8.55 0.00 46.08 2.85
36 37 1.488393 GAAGGATCCCTGTGGAGAAGG 59.512 57.143 8.55 0.00 46.08 3.46
37 38 0.719015 AGGATCCCTGTGGAGAAGGA 59.281 55.000 8.55 0.00 46.08 3.36
38 39 1.081174 AGGATCCCTGTGGAGAAGGAA 59.919 52.381 8.55 0.00 46.08 3.36
39 40 1.488393 GGATCCCTGTGGAGAAGGAAG 59.512 57.143 0.00 0.00 46.08 3.46
40 41 2.192263 GATCCCTGTGGAGAAGGAAGT 58.808 52.381 0.00 0.00 46.08 3.01
41 42 1.352083 TCCCTGTGGAGAAGGAAGTG 58.648 55.000 0.00 0.00 36.91 3.16
42 43 1.059913 CCCTGTGGAGAAGGAAGTGT 58.940 55.000 0.00 0.00 36.91 3.55
43 44 1.271054 CCCTGTGGAGAAGGAAGTGTG 60.271 57.143 0.00 0.00 36.91 3.82
44 45 1.271054 CCTGTGGAGAAGGAAGTGTGG 60.271 57.143 0.00 0.00 36.91 4.17
45 46 0.764890 TGTGGAGAAGGAAGTGTGGG 59.235 55.000 0.00 0.00 0.00 4.61
46 47 0.606673 GTGGAGAAGGAAGTGTGGGC 60.607 60.000 0.00 0.00 0.00 5.36
47 48 1.376037 GGAGAAGGAAGTGTGGGCG 60.376 63.158 0.00 0.00 0.00 6.13
48 49 1.671742 GAGAAGGAAGTGTGGGCGA 59.328 57.895 0.00 0.00 0.00 5.54
49 50 0.390472 GAGAAGGAAGTGTGGGCGAG 60.390 60.000 0.00 0.00 0.00 5.03
50 51 1.376037 GAAGGAAGTGTGGGCGAGG 60.376 63.158 0.00 0.00 0.00 4.63
51 52 2.804828 GAAGGAAGTGTGGGCGAGGG 62.805 65.000 0.00 0.00 0.00 4.30
52 53 4.410400 GGAAGTGTGGGCGAGGGG 62.410 72.222 0.00 0.00 0.00 4.79
53 54 3.637273 GAAGTGTGGGCGAGGGGT 61.637 66.667 0.00 0.00 0.00 4.95
54 55 3.901797 GAAGTGTGGGCGAGGGGTG 62.902 68.421 0.00 0.00 0.00 4.61
71 72 4.821589 GCGTGGAGGCTTCGGGAG 62.822 72.222 9.02 0.00 0.00 4.30
72 73 3.382832 CGTGGAGGCTTCGGGAGT 61.383 66.667 0.00 0.00 0.00 3.85
73 74 2.943978 CGTGGAGGCTTCGGGAGTT 61.944 63.158 0.00 0.00 0.00 3.01
74 75 1.601419 CGTGGAGGCTTCGGGAGTTA 61.601 60.000 0.00 0.00 0.00 2.24
75 76 0.175989 GTGGAGGCTTCGGGAGTTAG 59.824 60.000 0.00 0.00 0.00 2.34
76 77 0.252103 TGGAGGCTTCGGGAGTTAGT 60.252 55.000 0.00 0.00 0.00 2.24
77 78 0.175989 GGAGGCTTCGGGAGTTAGTG 59.824 60.000 0.00 0.00 0.00 2.74
78 79 0.460459 GAGGCTTCGGGAGTTAGTGC 60.460 60.000 0.00 0.00 0.00 4.40
79 80 1.810030 GGCTTCGGGAGTTAGTGCG 60.810 63.158 0.00 0.00 0.00 5.34
80 81 2.453638 GCTTCGGGAGTTAGTGCGC 61.454 63.158 0.00 0.00 0.00 6.09
81 82 1.215647 CTTCGGGAGTTAGTGCGCT 59.784 57.895 9.73 4.58 0.00 5.92
82 83 0.454600 CTTCGGGAGTTAGTGCGCTA 59.545 55.000 9.73 1.99 0.00 4.26
83 84 1.067212 CTTCGGGAGTTAGTGCGCTAT 59.933 52.381 9.73 0.00 0.00 2.97
84 85 0.666913 TCGGGAGTTAGTGCGCTATC 59.333 55.000 9.73 7.55 0.00 2.08
85 86 0.384309 CGGGAGTTAGTGCGCTATCA 59.616 55.000 9.73 0.00 0.00 2.15
86 87 1.854227 GGGAGTTAGTGCGCTATCAC 58.146 55.000 9.73 9.12 37.24 3.06
87 88 1.478137 GGAGTTAGTGCGCTATCACG 58.522 55.000 9.73 0.00 41.61 4.35
88 89 1.202268 GGAGTTAGTGCGCTATCACGT 60.202 52.381 9.73 0.00 41.61 4.49
89 90 1.846782 GAGTTAGTGCGCTATCACGTG 59.153 52.381 9.94 9.94 41.61 4.49
90 91 1.471287 AGTTAGTGCGCTATCACGTGA 59.529 47.619 22.48 22.48 41.61 4.35
91 92 2.099263 AGTTAGTGCGCTATCACGTGAT 59.901 45.455 31.93 31.93 41.61 3.06
92 93 3.314357 AGTTAGTGCGCTATCACGTGATA 59.686 43.478 30.84 30.84 41.61 2.15
93 94 2.121116 AGTGCGCTATCACGTGATAC 57.879 50.000 29.79 23.04 41.61 2.24
94 95 1.129326 GTGCGCTATCACGTGATACC 58.871 55.000 29.79 23.28 36.05 2.73
95 96 0.317519 TGCGCTATCACGTGATACCG 60.318 55.000 33.56 33.56 38.46 4.02
96 97 0.040692 GCGCTATCACGTGATACCGA 60.041 55.000 38.34 22.51 37.97 4.69
97 98 1.401148 GCGCTATCACGTGATACCGAT 60.401 52.381 38.34 20.78 37.97 4.18
98 99 2.506865 CGCTATCACGTGATACCGATC 58.493 52.381 34.12 19.85 37.97 3.69
99 100 2.506865 GCTATCACGTGATACCGATCG 58.493 52.381 29.79 20.79 36.05 3.69
100 101 2.095869 GCTATCACGTGATACCGATCGT 60.096 50.000 29.79 10.59 36.05 3.73
101 102 2.682952 ATCACGTGATACCGATCGTC 57.317 50.000 29.05 5.79 34.49 4.20
102 103 0.659427 TCACGTGATACCGATCGTCC 59.341 55.000 15.76 0.51 34.49 4.79
103 104 0.661552 CACGTGATACCGATCGTCCT 59.338 55.000 10.90 0.00 34.49 3.85
104 105 1.065102 CACGTGATACCGATCGTCCTT 59.935 52.381 10.90 0.00 34.49 3.36
105 106 1.747355 ACGTGATACCGATCGTCCTTT 59.253 47.619 15.09 0.00 34.49 3.11
106 107 2.117137 CGTGATACCGATCGTCCTTTG 58.883 52.381 15.09 0.00 34.49 2.77
107 108 2.479049 CGTGATACCGATCGTCCTTTGT 60.479 50.000 15.09 6.03 34.49 2.83
108 109 3.518590 GTGATACCGATCGTCCTTTGTT 58.481 45.455 15.09 0.00 34.49 2.83
109 110 3.930848 GTGATACCGATCGTCCTTTGTTT 59.069 43.478 15.09 0.00 34.49 2.83
110 111 4.390909 GTGATACCGATCGTCCTTTGTTTT 59.609 41.667 15.09 0.00 34.49 2.43
111 112 4.628333 TGATACCGATCGTCCTTTGTTTTC 59.372 41.667 15.09 5.29 34.49 2.29
112 113 3.121738 ACCGATCGTCCTTTGTTTTCT 57.878 42.857 15.09 0.00 0.00 2.52
113 114 2.806244 ACCGATCGTCCTTTGTTTTCTG 59.194 45.455 15.09 0.00 0.00 3.02
114 115 3.064207 CCGATCGTCCTTTGTTTTCTGA 58.936 45.455 15.09 0.00 0.00 3.27
115 116 3.684788 CCGATCGTCCTTTGTTTTCTGAT 59.315 43.478 15.09 0.00 0.00 2.90
116 117 4.154195 CCGATCGTCCTTTGTTTTCTGATT 59.846 41.667 15.09 0.00 0.00 2.57
117 118 5.316770 CGATCGTCCTTTGTTTTCTGATTC 58.683 41.667 7.03 0.00 0.00 2.52
118 119 5.120830 CGATCGTCCTTTGTTTTCTGATTCT 59.879 40.000 7.03 0.00 0.00 2.40
119 120 6.347725 CGATCGTCCTTTGTTTTCTGATTCTT 60.348 38.462 7.03 0.00 0.00 2.52
120 121 6.300354 TCGTCCTTTGTTTTCTGATTCTTC 57.700 37.500 0.00 0.00 0.00 2.87
121 122 5.820423 TCGTCCTTTGTTTTCTGATTCTTCA 59.180 36.000 0.00 0.00 0.00 3.02
122 123 5.909610 CGTCCTTTGTTTTCTGATTCTTCAC 59.090 40.000 0.00 0.00 0.00 3.18
123 124 5.909610 GTCCTTTGTTTTCTGATTCTTCACG 59.090 40.000 0.00 0.00 0.00 4.35
124 125 5.008613 TCCTTTGTTTTCTGATTCTTCACGG 59.991 40.000 0.00 0.00 0.00 4.94
125 126 4.829064 TTGTTTTCTGATTCTTCACGGG 57.171 40.909 0.00 0.00 0.00 5.28
126 127 3.815809 TGTTTTCTGATTCTTCACGGGT 58.184 40.909 0.00 0.00 0.00 5.28
127 128 3.813166 TGTTTTCTGATTCTTCACGGGTC 59.187 43.478 0.00 0.00 0.00 4.46
128 129 2.363788 TTCTGATTCTTCACGGGTCG 57.636 50.000 0.00 0.00 0.00 4.79
129 130 0.530744 TCTGATTCTTCACGGGTCGG 59.469 55.000 0.00 0.00 0.00 4.79
130 131 0.530744 CTGATTCTTCACGGGTCGGA 59.469 55.000 0.00 0.00 0.00 4.55
131 132 0.970640 TGATTCTTCACGGGTCGGAA 59.029 50.000 0.00 0.00 0.00 4.30
132 133 1.337447 TGATTCTTCACGGGTCGGAAC 60.337 52.381 0.00 0.00 0.00 3.62
133 134 0.682852 ATTCTTCACGGGTCGGAACA 59.317 50.000 0.00 0.00 0.00 3.18
134 135 0.464870 TTCTTCACGGGTCGGAACAA 59.535 50.000 0.00 0.00 0.00 2.83
135 136 0.464870 TCTTCACGGGTCGGAACAAA 59.535 50.000 0.00 0.00 0.00 2.83
136 137 0.865769 CTTCACGGGTCGGAACAAAG 59.134 55.000 0.00 0.00 0.00 2.77
137 138 0.178533 TTCACGGGTCGGAACAAAGT 59.821 50.000 0.00 0.00 0.00 2.66
138 139 0.178533 TCACGGGTCGGAACAAAGTT 59.821 50.000 0.00 0.00 0.00 2.66
139 140 0.584876 CACGGGTCGGAACAAAGTTC 59.415 55.000 0.00 1.37 0.00 3.01
140 141 0.466963 ACGGGTCGGAACAAAGTTCT 59.533 50.000 9.46 0.00 0.00 3.01
141 142 1.145803 CGGGTCGGAACAAAGTTCTC 58.854 55.000 9.46 0.41 0.00 2.87
142 143 1.270147 CGGGTCGGAACAAAGTTCTCT 60.270 52.381 9.46 0.00 0.00 3.10
143 144 2.805657 CGGGTCGGAACAAAGTTCTCTT 60.806 50.000 9.46 0.00 35.14 2.85
144 145 3.211865 GGGTCGGAACAAAGTTCTCTTT 58.788 45.455 9.46 0.00 43.66 2.52
145 146 4.383173 GGGTCGGAACAAAGTTCTCTTTA 58.617 43.478 9.46 0.00 41.31 1.85
146 147 4.212847 GGGTCGGAACAAAGTTCTCTTTAC 59.787 45.833 9.46 2.43 41.31 2.01
147 148 4.084693 GGTCGGAACAAAGTTCTCTTTACG 60.085 45.833 9.46 4.29 41.31 3.18
148 149 4.053295 TCGGAACAAAGTTCTCTTTACGG 58.947 43.478 9.46 0.00 41.31 4.02
149 150 3.185797 CGGAACAAAGTTCTCTTTACGGG 59.814 47.826 9.46 0.00 41.31 5.28
150 151 4.383173 GGAACAAAGTTCTCTTTACGGGA 58.617 43.478 9.46 0.00 41.31 5.14
151 152 5.001874 GGAACAAAGTTCTCTTTACGGGAT 58.998 41.667 9.46 0.00 41.31 3.85
152 153 5.121925 GGAACAAAGTTCTCTTTACGGGATC 59.878 44.000 9.46 0.00 41.31 3.36
153 154 5.223449 ACAAAGTTCTCTTTACGGGATCA 57.777 39.130 0.00 0.00 41.31 2.92
154 155 5.238583 ACAAAGTTCTCTTTACGGGATCAG 58.761 41.667 0.00 0.00 41.31 2.90
155 156 4.473477 AAGTTCTCTTTACGGGATCAGG 57.527 45.455 0.00 0.00 0.00 3.86
156 157 3.442076 AGTTCTCTTTACGGGATCAGGT 58.558 45.455 0.00 0.00 0.00 4.00
157 158 3.195825 AGTTCTCTTTACGGGATCAGGTG 59.804 47.826 0.00 0.00 0.00 4.00
158 159 2.108168 TCTCTTTACGGGATCAGGTGG 58.892 52.381 0.00 0.00 0.00 4.61
159 160 1.139058 CTCTTTACGGGATCAGGTGGG 59.861 57.143 0.00 0.00 0.00 4.61
160 161 0.180406 CTTTACGGGATCAGGTGGGG 59.820 60.000 0.00 0.00 0.00 4.96
161 162 0.252789 TTTACGGGATCAGGTGGGGA 60.253 55.000 0.00 0.00 0.00 4.81
162 163 0.030501 TTACGGGATCAGGTGGGGAT 60.031 55.000 0.00 0.00 0.00 3.85
163 164 0.861854 TACGGGATCAGGTGGGGATA 59.138 55.000 0.00 0.00 0.00 2.59
164 165 0.030501 ACGGGATCAGGTGGGGATAA 60.031 55.000 0.00 0.00 0.00 1.75
165 166 1.136828 CGGGATCAGGTGGGGATAAA 58.863 55.000 0.00 0.00 0.00 1.40
166 167 1.493022 CGGGATCAGGTGGGGATAAAA 59.507 52.381 0.00 0.00 0.00 1.52
167 168 2.092103 CGGGATCAGGTGGGGATAAAAA 60.092 50.000 0.00 0.00 0.00 1.94
168 169 3.566351 GGGATCAGGTGGGGATAAAAAG 58.434 50.000 0.00 0.00 0.00 2.27
169 170 3.052869 GGGATCAGGTGGGGATAAAAAGT 60.053 47.826 0.00 0.00 0.00 2.66
170 171 4.572007 GGGATCAGGTGGGGATAAAAAGTT 60.572 45.833 0.00 0.00 0.00 2.66
171 172 5.340528 GGGATCAGGTGGGGATAAAAAGTTA 60.341 44.000 0.00 0.00 0.00 2.24
172 173 5.593095 GGATCAGGTGGGGATAAAAAGTTAC 59.407 44.000 0.00 0.00 0.00 2.50
173 174 5.853572 TCAGGTGGGGATAAAAAGTTACT 57.146 39.130 0.00 0.00 0.00 2.24
174 175 6.208840 TCAGGTGGGGATAAAAAGTTACTT 57.791 37.500 0.00 0.00 0.00 2.24
175 176 6.616577 TCAGGTGGGGATAAAAAGTTACTTT 58.383 36.000 4.30 4.30 34.94 2.66
176 177 7.070629 TCAGGTGGGGATAAAAAGTTACTTTT 58.929 34.615 16.34 16.34 44.27 2.27
233 234 3.827898 GCTAGCCAGACGCGTCCT 61.828 66.667 34.08 25.40 44.76 3.85
234 235 2.885861 CTAGCCAGACGCGTCCTT 59.114 61.111 34.08 15.71 44.76 3.36
235 236 1.517257 CTAGCCAGACGCGTCCTTG 60.517 63.158 34.08 25.74 44.76 3.61
236 237 1.934220 CTAGCCAGACGCGTCCTTGA 61.934 60.000 34.08 15.79 44.76 3.02
237 238 1.529152 TAGCCAGACGCGTCCTTGAA 61.529 55.000 34.08 15.69 44.76 2.69
238 239 1.959226 GCCAGACGCGTCCTTGAAA 60.959 57.895 34.08 0.00 0.00 2.69
239 240 1.503818 GCCAGACGCGTCCTTGAAAA 61.504 55.000 34.08 0.00 0.00 2.29
240 241 0.941542 CCAGACGCGTCCTTGAAAAA 59.058 50.000 34.08 0.00 0.00 1.94
274 275 9.997172 TCATGTATATATGAATGTACTCCCTCT 57.003 33.333 9.51 0.00 34.32 3.69
276 277 9.775539 ATGTATATATGAATGTACTCCCTCTGT 57.224 33.333 0.00 0.00 32.49 3.41
277 278 9.601810 TGTATATATGAATGTACTCCCTCTGTT 57.398 33.333 0.00 0.00 32.49 3.16
279 280 8.964533 ATATATGAATGTACTCCCTCTGTTCT 57.035 34.615 0.00 0.00 0.00 3.01
280 281 7.682787 ATATGAATGTACTCCCTCTGTTCTT 57.317 36.000 0.00 0.00 0.00 2.52
281 282 8.783660 ATATGAATGTACTCCCTCTGTTCTTA 57.216 34.615 0.00 0.00 0.00 2.10
282 283 6.928348 TGAATGTACTCCCTCTGTTCTTAA 57.072 37.500 0.00 0.00 0.00 1.85
283 284 7.311092 TGAATGTACTCCCTCTGTTCTTAAA 57.689 36.000 0.00 0.00 0.00 1.52
284 285 7.918076 TGAATGTACTCCCTCTGTTCTTAAAT 58.082 34.615 0.00 0.00 0.00 1.40
285 286 9.042450 TGAATGTACTCCCTCTGTTCTTAAATA 57.958 33.333 0.00 0.00 0.00 1.40
292 293 9.495382 ACTCCCTCTGTTCTTAAATATAAGTCT 57.505 33.333 0.00 0.00 39.65 3.24
326 327 8.854614 ATTCCAATACAGAATACATAAGGAGC 57.145 34.615 0.00 0.00 32.20 4.70
327 328 7.373617 TCCAATACAGAATACATAAGGAGCA 57.626 36.000 0.00 0.00 0.00 4.26
328 329 7.801104 TCCAATACAGAATACATAAGGAGCAA 58.199 34.615 0.00 0.00 0.00 3.91
329 330 8.271458 TCCAATACAGAATACATAAGGAGCAAA 58.729 33.333 0.00 0.00 0.00 3.68
330 331 8.902806 CCAATACAGAATACATAAGGAGCAAAA 58.097 33.333 0.00 0.00 0.00 2.44
333 334 9.851686 ATACAGAATACATAAGGAGCAAAATGA 57.148 29.630 0.00 0.00 0.00 2.57
334 335 8.218338 ACAGAATACATAAGGAGCAAAATGAG 57.782 34.615 0.00 0.00 0.00 2.90
335 336 7.831193 ACAGAATACATAAGGAGCAAAATGAGT 59.169 33.333 0.00 0.00 0.00 3.41
336 337 8.127327 CAGAATACATAAGGAGCAAAATGAGTG 58.873 37.037 0.00 0.00 0.00 3.51
337 338 8.049117 AGAATACATAAGGAGCAAAATGAGTGA 58.951 33.333 0.00 0.00 0.00 3.41
338 339 8.579850 AATACATAAGGAGCAAAATGAGTGAA 57.420 30.769 0.00 0.00 0.00 3.18
339 340 8.757982 ATACATAAGGAGCAAAATGAGTGAAT 57.242 30.769 0.00 0.00 0.00 2.57
340 341 7.093322 ACATAAGGAGCAAAATGAGTGAATC 57.907 36.000 0.00 0.00 0.00 2.52
341 342 6.888632 ACATAAGGAGCAAAATGAGTGAATCT 59.111 34.615 0.00 0.00 0.00 2.40
342 343 8.049117 ACATAAGGAGCAAAATGAGTGAATCTA 58.951 33.333 0.00 0.00 0.00 1.98
343 344 6.749923 AAGGAGCAAAATGAGTGAATCTAC 57.250 37.500 0.00 0.00 0.00 2.59
344 345 5.809001 AGGAGCAAAATGAGTGAATCTACA 58.191 37.500 0.00 0.00 0.00 2.74
345 346 5.645497 AGGAGCAAAATGAGTGAATCTACAC 59.355 40.000 0.00 0.00 40.60 2.90
386 387 4.832248 ACATCCGTATGTAGCCCATATTG 58.168 43.478 0.00 0.00 44.66 1.90
387 388 4.530553 ACATCCGTATGTAGCCCATATTGA 59.469 41.667 0.00 0.00 44.66 2.57
388 389 5.012664 ACATCCGTATGTAGCCCATATTGAA 59.987 40.000 0.00 0.00 44.66 2.69
389 390 5.554437 TCCGTATGTAGCCCATATTGAAA 57.446 39.130 0.00 0.00 38.29 2.69
390 391 6.121776 TCCGTATGTAGCCCATATTGAAAT 57.878 37.500 0.00 0.00 38.29 2.17
391 392 6.170506 TCCGTATGTAGCCCATATTGAAATC 58.829 40.000 0.00 0.00 38.29 2.17
392 393 6.013725 TCCGTATGTAGCCCATATTGAAATCT 60.014 38.462 0.00 0.00 38.29 2.40
393 394 6.313905 CCGTATGTAGCCCATATTGAAATCTC 59.686 42.308 0.00 0.00 38.29 2.75
394 395 7.099764 CGTATGTAGCCCATATTGAAATCTCT 58.900 38.462 0.00 0.00 38.29 3.10
395 396 8.251026 CGTATGTAGCCCATATTGAAATCTCTA 58.749 37.037 0.00 0.00 38.29 2.43
396 397 9.944376 GTATGTAGCCCATATTGAAATCTCTAA 57.056 33.333 0.00 0.00 38.29 2.10
398 399 9.866655 ATGTAGCCCATATTGAAATCTCTAAAA 57.133 29.630 0.00 0.00 29.82 1.52
399 400 9.693739 TGTAGCCCATATTGAAATCTCTAAAAA 57.306 29.630 0.00 0.00 0.00 1.94
423 424 8.919777 AAAGAATTATATTTAGGAACGGAGGG 57.080 34.615 0.00 0.00 0.00 4.30
424 425 7.867160 AGAATTATATTTAGGAACGGAGGGA 57.133 36.000 0.00 0.00 0.00 4.20
425 426 7.908453 AGAATTATATTTAGGAACGGAGGGAG 58.092 38.462 0.00 0.00 0.00 4.30
426 427 7.513091 AGAATTATATTTAGGAACGGAGGGAGT 59.487 37.037 0.00 0.00 0.00 3.85
427 428 8.731591 AATTATATTTAGGAACGGAGGGAGTA 57.268 34.615 0.00 0.00 0.00 2.59
428 429 7.771927 TTATATTTAGGAACGGAGGGAGTAG 57.228 40.000 0.00 0.00 0.00 2.57
429 430 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
430 431 3.744940 TTAGGAACGGAGGGAGTAGAA 57.255 47.619 0.00 0.00 0.00 2.10
431 432 2.850695 AGGAACGGAGGGAGTAGAAT 57.149 50.000 0.00 0.00 0.00 2.40
432 433 2.389715 AGGAACGGAGGGAGTAGAATG 58.610 52.381 0.00 0.00 0.00 2.67
433 434 2.024273 AGGAACGGAGGGAGTAGAATGA 60.024 50.000 0.00 0.00 0.00 2.57
434 435 2.764572 GGAACGGAGGGAGTAGAATGAA 59.235 50.000 0.00 0.00 0.00 2.57
435 436 3.197116 GGAACGGAGGGAGTAGAATGAAA 59.803 47.826 0.00 0.00 0.00 2.69
436 437 4.141688 GGAACGGAGGGAGTAGAATGAAAT 60.142 45.833 0.00 0.00 0.00 2.17
437 438 5.070047 GGAACGGAGGGAGTAGAATGAAATA 59.930 44.000 0.00 0.00 0.00 1.40
438 439 6.407752 GGAACGGAGGGAGTAGAATGAAATAA 60.408 42.308 0.00 0.00 0.00 1.40
439 440 6.555463 ACGGAGGGAGTAGAATGAAATAAA 57.445 37.500 0.00 0.00 0.00 1.40
440 441 7.138054 ACGGAGGGAGTAGAATGAAATAAAT 57.862 36.000 0.00 0.00 0.00 1.40
441 442 7.217906 ACGGAGGGAGTAGAATGAAATAAATC 58.782 38.462 0.00 0.00 0.00 2.17
442 443 6.651225 CGGAGGGAGTAGAATGAAATAAATCC 59.349 42.308 0.00 0.00 0.00 3.01
443 444 7.518188 GGAGGGAGTAGAATGAAATAAATCCA 58.482 38.462 0.00 0.00 0.00 3.41
444 445 7.998964 GGAGGGAGTAGAATGAAATAAATCCAA 59.001 37.037 0.00 0.00 0.00 3.53
445 446 9.408648 GAGGGAGTAGAATGAAATAAATCCAAA 57.591 33.333 0.00 0.00 0.00 3.28
446 447 9.768215 AGGGAGTAGAATGAAATAAATCCAAAA 57.232 29.630 0.00 0.00 0.00 2.44
540 541 9.549923 GAATACGAAAAGAAATGAAACAAAACG 57.450 29.630 0.00 0.00 0.00 3.60
541 542 6.937886 ACGAAAAGAAATGAAACAAAACGT 57.062 29.167 0.00 0.00 0.00 3.99
542 543 9.719279 ATACGAAAAGAAATGAAACAAAACGTA 57.281 25.926 0.00 0.00 35.26 3.57
543 544 8.099746 ACGAAAAGAAATGAAACAAAACGTAG 57.900 30.769 0.00 0.00 0.00 3.51
544 545 7.964011 ACGAAAAGAAATGAAACAAAACGTAGA 59.036 29.630 0.00 0.00 0.00 2.59
545 546 8.790674 CGAAAAGAAATGAAACAAAACGTAGAA 58.209 29.630 0.00 0.00 0.00 2.10
547 548 9.849166 AAAAGAAATGAAACAAAACGTAGAAGA 57.151 25.926 0.00 0.00 0.00 2.87
548 549 9.849166 AAAGAAATGAAACAAAACGTAGAAGAA 57.151 25.926 0.00 0.00 0.00 2.52
549 550 9.849166 AAGAAATGAAACAAAACGTAGAAGAAA 57.151 25.926 0.00 0.00 0.00 2.52
550 551 9.849166 AGAAATGAAACAAAACGTAGAAGAAAA 57.151 25.926 0.00 0.00 0.00 2.29
642 643 1.165270 AAAAATGGAGAAGACCGGCG 58.835 50.000 0.00 0.00 0.00 6.46
643 644 1.305930 AAAATGGAGAAGACCGGCGC 61.306 55.000 0.00 0.00 0.00 6.53
644 645 3.682292 AATGGAGAAGACCGGCGCC 62.682 63.158 19.07 19.07 0.00 6.53
673 674 0.593128 CCAAGAAGCCCAGTCAAACG 59.407 55.000 0.00 0.00 0.00 3.60
691 693 2.188994 GAGCTGGCTGGGCTACTG 59.811 66.667 0.00 0.00 40.40 2.74
699 701 0.179070 GCTGGGCTACTGCTTACTCC 60.179 60.000 4.18 0.00 40.50 3.85
715 717 3.283259 ACTCCACTAATTAAGCAGGCC 57.717 47.619 0.00 0.00 0.00 5.19
745 747 2.966309 GAGCCCAGTTCAAACGGCG 61.966 63.158 4.80 4.80 0.00 6.46
855 872 6.350445 CGAGAAAACAATCCATGGATCCTTTT 60.350 38.462 27.45 27.33 33.08 2.27
856 873 6.939622 AGAAAACAATCCATGGATCCTTTTC 58.060 36.000 33.64 33.64 38.53 2.29
857 874 5.682234 AAACAATCCATGGATCCTTTTCC 57.318 39.130 27.45 0.00 33.08 3.13
858 875 4.614967 ACAATCCATGGATCCTTTTCCT 57.385 40.909 27.45 6.59 36.68 3.36
859 876 4.951603 ACAATCCATGGATCCTTTTCCTT 58.048 39.130 27.45 6.66 36.68 3.36
860 877 5.344566 ACAATCCATGGATCCTTTTCCTTT 58.655 37.500 27.45 5.89 36.68 3.11
867 884 0.541764 ATCCTTTTCCTTTGCCCGCA 60.542 50.000 0.00 0.00 0.00 5.69
888 905 0.873743 CCTCAAGCCTCGAATCGCTC 60.874 60.000 0.00 0.00 33.09 5.03
899 916 0.737715 GAATCGCTCGCAACCTCTGT 60.738 55.000 0.00 0.00 0.00 3.41
908 930 2.086869 CGCAACCTCTGTCATTCCATT 58.913 47.619 0.00 0.00 0.00 3.16
919 941 1.011293 TCATTCCATTCCTCCCCTCCT 59.989 52.381 0.00 0.00 0.00 3.69
1067 1096 1.694696 CCCATTACTCTCCACCTAGCC 59.305 57.143 0.00 0.00 0.00 3.93
1068 1097 1.694696 CCATTACTCTCCACCTAGCCC 59.305 57.143 0.00 0.00 0.00 5.19
1075 1104 0.400213 CTCCACCTAGCCCAACAACA 59.600 55.000 0.00 0.00 0.00 3.33
1110 1139 0.319813 GCCATGGCTTCCAACAACAC 60.320 55.000 29.98 0.00 36.95 3.32
1165 1194 1.372997 CGACCTCAACGACCACCTG 60.373 63.158 0.00 0.00 0.00 4.00
1300 1332 2.363361 GAGGGGGACGAGGAGGAA 59.637 66.667 0.00 0.00 0.00 3.36
1494 1526 1.968540 GTGAGGTGGCCAAGTGAGC 60.969 63.158 7.24 0.00 0.00 4.26
1553 1588 2.096013 GCTTCTACTCAATTTGGTCGGC 59.904 50.000 0.00 0.00 0.00 5.54
1556 1595 0.609151 TACTCAATTTGGTCGGCCGA 59.391 50.000 27.28 27.28 37.67 5.54
1571 1610 1.218047 CCGATCGGTGGCTTCTTCA 59.782 57.895 26.35 0.00 0.00 3.02
1622 1661 6.128363 CCCTGAGTCGTTTGGAGTTTATTTAC 60.128 42.308 0.00 0.00 0.00 2.01
1763 1810 4.154015 TGTGCGGTTCTGAAATATTCACTG 59.846 41.667 0.00 0.00 35.46 3.66
1782 1829 3.583086 ACTGCTCCTAGCTTTTAAGGTCA 59.417 43.478 0.00 0.00 42.97 4.02
1783 1830 3.935828 CTGCTCCTAGCTTTTAAGGTCAC 59.064 47.826 0.00 0.00 42.97 3.67
1784 1831 2.930682 GCTCCTAGCTTTTAAGGTCACG 59.069 50.000 0.00 0.00 38.45 4.35
1785 1832 3.368116 GCTCCTAGCTTTTAAGGTCACGA 60.368 47.826 0.00 0.00 38.45 4.35
1786 1833 4.680975 GCTCCTAGCTTTTAAGGTCACGAT 60.681 45.833 0.00 0.00 38.45 3.73
1878 1940 4.614555 TTAACAGCAATGCTACGGATTG 57.385 40.909 7.70 0.00 36.40 2.67
1906 1968 9.221775 CGGTGATTCTTATGCAATTAGTTTTAC 57.778 33.333 0.00 0.00 0.00 2.01
1919 1981 7.592938 CAATTAGTTTTACAGGCTGACATGAA 58.407 34.615 23.66 6.50 0.00 2.57
1925 1987 3.498774 ACAGGCTGACATGAAAGTCTT 57.501 42.857 23.66 0.00 39.27 3.01
1932 1994 5.812127 GGCTGACATGAAAGTCTTTGTTTTT 59.188 36.000 1.60 0.00 39.27 1.94
1988 2050 7.120726 CACTCCCCTCTAAATACGTTGAATTTT 59.879 37.037 0.00 0.00 0.00 1.82
2026 2088 9.807649 GGATGAACATTTTCTTTATAATGCACT 57.192 29.630 0.00 0.00 35.63 4.40
2040 2102 9.685828 TTTATAATGCACTGTGAACCTTTTTAC 57.314 29.630 12.86 0.00 0.00 2.01
2041 2103 5.852282 AATGCACTGTGAACCTTTTTACT 57.148 34.783 12.86 0.00 0.00 2.24
2047 2109 9.899661 TGCACTGTGAACCTTTTTACTATATAT 57.100 29.630 12.86 0.00 0.00 0.86
2207 2270 5.079689 ACCGAAACAAAACCACTGAAAAT 57.920 34.783 0.00 0.00 0.00 1.82
2209 2272 4.206200 CCGAAACAAAACCACTGAAAATCG 59.794 41.667 0.00 0.00 0.00 3.34
2213 2276 3.697045 ACAAAACCACTGAAAATCGGACA 59.303 39.130 0.00 0.00 0.00 4.02
2263 2326 4.874966 CCCTACAGAAGAAAGAAGATGCAG 59.125 45.833 0.00 0.00 0.00 4.41
2264 2327 5.486526 CCTACAGAAGAAAGAAGATGCAGT 58.513 41.667 0.00 0.00 0.00 4.40
2279 2342 2.416747 TGCAGTGAGAAAAGATGTCGG 58.583 47.619 0.00 0.00 0.00 4.79
2281 2344 2.413453 GCAGTGAGAAAAGATGTCGGAC 59.587 50.000 0.00 0.00 0.00 4.79
2315 2378 2.514013 CCGGCATTGCGTCGACTAC 61.514 63.158 14.70 6.24 0.00 2.73
2325 2388 1.292223 GTCGACTACTTGCTGCCCA 59.708 57.895 8.70 0.00 0.00 5.36
2331 2394 3.545124 TACTTGCTGCCCACGGGTG 62.545 63.158 3.54 0.00 37.65 4.61
2353 2416 4.227300 TGGCAAATAGGACCTGTTATCAGT 59.773 41.667 3.53 0.00 39.82 3.41
2384 2447 5.890424 AGTCACTACTTCTACAAGCTCTC 57.110 43.478 0.00 0.00 32.09 3.20
2449 2512 2.198406 CGACAACGAGTTTTCCTCACA 58.802 47.619 0.00 0.00 40.48 3.58
2450 2513 2.605818 CGACAACGAGTTTTCCTCACAA 59.394 45.455 0.00 0.00 40.48 3.33
2457 2520 0.608130 GTTTTCCTCACAATGGGCCC 59.392 55.000 17.59 17.59 0.00 5.80
2464 2527 1.825191 CACAATGGGCCCTCGATGG 60.825 63.158 25.70 8.55 0.00 3.51
2477 2540 0.465705 TCGATGGATGCAGGAGGAAC 59.534 55.000 0.00 0.00 0.00 3.62
2485 2548 3.057245 GGATGCAGGAGGAACAAAACTTC 60.057 47.826 0.00 0.00 0.00 3.01
2496 2559 0.666374 CAAAACTTCGACACCCCCAC 59.334 55.000 0.00 0.00 0.00 4.61
2508 2571 1.084018 ACCCCCACAGATTTGGATGT 58.916 50.000 0.00 0.00 39.24 3.06
2516 2579 6.295802 CCCCACAGATTTGGATGTATTGTTTT 60.296 38.462 0.00 0.00 39.24 2.43
2518 2581 8.310382 CCCACAGATTTGGATGTATTGTTTTAA 58.690 33.333 0.00 0.00 39.24 1.52
2519 2582 9.357652 CCACAGATTTGGATGTATTGTTTTAAG 57.642 33.333 0.00 0.00 39.24 1.85
2528 2591 9.562408 TGGATGTATTGTTTTAAGTTCTACACA 57.438 29.630 0.00 0.00 0.00 3.72
2540 2603 5.031066 AGTTCTACACAGGTGCTTTTGTA 57.969 39.130 0.00 0.00 0.00 2.41
2550 2613 2.805671 GGTGCTTTTGTAATGGTTTGGC 59.194 45.455 0.00 0.00 0.00 4.52
2576 2639 7.393515 CCTACTTAATATATGACCTTTTGGCCC 59.606 40.741 0.00 0.00 45.59 5.80
2583 2646 1.216678 TGACCTTTTGGCCCTTTCTCA 59.783 47.619 0.00 0.00 45.59 3.27
2640 2703 1.154338 GCAAGCATGACACGCTGAC 60.154 57.895 0.00 0.00 40.35 3.51
2642 2705 0.870393 CAAGCATGACACGCTGACTT 59.130 50.000 0.00 0.00 40.35 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.701290 GGATCCTTCTTCTCAACGAAAGAAA 59.299 40.000 3.84 0.00 32.60 2.52
1 2 5.238583 GGATCCTTCTTCTCAACGAAAGAA 58.761 41.667 3.84 0.00 0.00 2.52
2 3 4.322801 GGGATCCTTCTTCTCAACGAAAGA 60.323 45.833 12.58 0.00 0.00 2.52
3 4 3.935828 GGGATCCTTCTTCTCAACGAAAG 59.064 47.826 12.58 0.00 0.00 2.62
4 5 3.583086 AGGGATCCTTCTTCTCAACGAAA 59.417 43.478 12.58 0.00 0.00 3.46
5 6 3.055819 CAGGGATCCTTCTTCTCAACGAA 60.056 47.826 12.58 0.00 0.00 3.85
6 7 2.497675 CAGGGATCCTTCTTCTCAACGA 59.502 50.000 12.58 0.00 0.00 3.85
7 8 2.234908 ACAGGGATCCTTCTTCTCAACG 59.765 50.000 12.58 0.00 0.00 4.10
8 9 3.604582 CACAGGGATCCTTCTTCTCAAC 58.395 50.000 12.58 0.00 0.00 3.18
9 10 2.573462 CCACAGGGATCCTTCTTCTCAA 59.427 50.000 12.58 0.00 35.59 3.02
10 11 2.191400 CCACAGGGATCCTTCTTCTCA 58.809 52.381 12.58 0.00 35.59 3.27
11 12 2.433970 CTCCACAGGGATCCTTCTTCTC 59.566 54.545 12.58 0.00 43.91 2.87
12 13 2.045047 TCTCCACAGGGATCCTTCTTCT 59.955 50.000 12.58 0.00 43.91 2.85
13 14 2.472029 TCTCCACAGGGATCCTTCTTC 58.528 52.381 12.58 0.00 43.91 2.87
14 15 2.649742 TCTCCACAGGGATCCTTCTT 57.350 50.000 12.58 0.00 43.91 2.52
15 16 2.476199 CTTCTCCACAGGGATCCTTCT 58.524 52.381 12.58 0.00 43.91 2.85
16 17 1.488393 CCTTCTCCACAGGGATCCTTC 59.512 57.143 12.58 0.00 43.91 3.46
17 18 1.081174 TCCTTCTCCACAGGGATCCTT 59.919 52.381 12.58 0.00 43.91 3.36
18 19 0.719015 TCCTTCTCCACAGGGATCCT 59.281 55.000 12.58 0.00 43.91 3.24
19 20 1.488393 CTTCCTTCTCCACAGGGATCC 59.512 57.143 1.92 1.92 43.91 3.36
20 21 2.093235 CACTTCCTTCTCCACAGGGATC 60.093 54.545 0.00 0.00 43.91 3.36
21 22 1.912043 CACTTCCTTCTCCACAGGGAT 59.088 52.381 0.00 0.00 43.91 3.85
22 23 1.352083 CACTTCCTTCTCCACAGGGA 58.648 55.000 0.00 0.00 42.29 4.20
23 24 1.059913 ACACTTCCTTCTCCACAGGG 58.940 55.000 0.00 0.00 31.50 4.45
24 25 1.271054 CCACACTTCCTTCTCCACAGG 60.271 57.143 0.00 0.00 0.00 4.00
25 26 1.271054 CCCACACTTCCTTCTCCACAG 60.271 57.143 0.00 0.00 0.00 3.66
26 27 0.764890 CCCACACTTCCTTCTCCACA 59.235 55.000 0.00 0.00 0.00 4.17
27 28 0.606673 GCCCACACTTCCTTCTCCAC 60.607 60.000 0.00 0.00 0.00 4.02
28 29 1.761174 GCCCACACTTCCTTCTCCA 59.239 57.895 0.00 0.00 0.00 3.86
29 30 1.376037 CGCCCACACTTCCTTCTCC 60.376 63.158 0.00 0.00 0.00 3.71
30 31 0.390472 CTCGCCCACACTTCCTTCTC 60.390 60.000 0.00 0.00 0.00 2.87
31 32 1.674057 CTCGCCCACACTTCCTTCT 59.326 57.895 0.00 0.00 0.00 2.85
32 33 1.376037 CCTCGCCCACACTTCCTTC 60.376 63.158 0.00 0.00 0.00 3.46
33 34 2.750350 CCTCGCCCACACTTCCTT 59.250 61.111 0.00 0.00 0.00 3.36
34 35 3.322466 CCCTCGCCCACACTTCCT 61.322 66.667 0.00 0.00 0.00 3.36
35 36 4.410400 CCCCTCGCCCACACTTCC 62.410 72.222 0.00 0.00 0.00 3.46
36 37 3.637273 ACCCCTCGCCCACACTTC 61.637 66.667 0.00 0.00 0.00 3.01
37 38 3.953775 CACCCCTCGCCCACACTT 61.954 66.667 0.00 0.00 0.00 3.16
54 55 4.821589 CTCCCGAAGCCTCCACGC 62.822 72.222 0.00 0.00 0.00 5.34
55 56 1.601419 TAACTCCCGAAGCCTCCACG 61.601 60.000 0.00 0.00 0.00 4.94
56 57 0.175989 CTAACTCCCGAAGCCTCCAC 59.824 60.000 0.00 0.00 0.00 4.02
57 58 0.252103 ACTAACTCCCGAAGCCTCCA 60.252 55.000 0.00 0.00 0.00 3.86
58 59 0.175989 CACTAACTCCCGAAGCCTCC 59.824 60.000 0.00 0.00 0.00 4.30
59 60 0.460459 GCACTAACTCCCGAAGCCTC 60.460 60.000 0.00 0.00 0.00 4.70
60 61 1.597461 GCACTAACTCCCGAAGCCT 59.403 57.895 0.00 0.00 0.00 4.58
61 62 1.810030 CGCACTAACTCCCGAAGCC 60.810 63.158 0.00 0.00 0.00 4.35
62 63 2.453638 GCGCACTAACTCCCGAAGC 61.454 63.158 0.30 0.00 0.00 3.86
63 64 0.454600 TAGCGCACTAACTCCCGAAG 59.545 55.000 11.47 0.00 0.00 3.79
64 65 1.066605 GATAGCGCACTAACTCCCGAA 59.933 52.381 11.47 0.00 30.45 4.30
65 66 0.666913 GATAGCGCACTAACTCCCGA 59.333 55.000 11.47 0.00 30.45 5.14
66 67 0.384309 TGATAGCGCACTAACTCCCG 59.616 55.000 11.47 0.00 30.45 5.14
67 68 1.854227 GTGATAGCGCACTAACTCCC 58.146 55.000 11.47 0.00 35.91 4.30
68 69 1.202268 ACGTGATAGCGCACTAACTCC 60.202 52.381 11.47 0.00 36.65 3.85
69 70 1.846782 CACGTGATAGCGCACTAACTC 59.153 52.381 10.90 0.00 36.65 3.01
70 71 1.471287 TCACGTGATAGCGCACTAACT 59.529 47.619 15.76 0.00 36.65 2.24
71 72 1.904144 TCACGTGATAGCGCACTAAC 58.096 50.000 15.76 1.20 36.65 2.34
72 73 2.863401 ATCACGTGATAGCGCACTAA 57.137 45.000 29.05 0.00 36.65 2.24
73 74 2.031420 GGTATCACGTGATAGCGCACTA 60.031 50.000 37.55 18.00 43.01 2.74
74 75 1.269102 GGTATCACGTGATAGCGCACT 60.269 52.381 37.55 18.03 43.01 4.40
75 76 1.129326 GGTATCACGTGATAGCGCAC 58.871 55.000 37.55 27.59 43.01 5.34
76 77 3.562639 GGTATCACGTGATAGCGCA 57.437 52.632 37.55 19.94 43.01 6.09
79 80 2.095869 ACGATCGGTATCACGTGATAGC 60.096 50.000 39.18 39.18 46.45 2.97
80 81 3.424565 GGACGATCGGTATCACGTGATAG 60.425 52.174 33.05 23.62 37.67 2.08
81 82 2.481568 GGACGATCGGTATCACGTGATA 59.518 50.000 29.79 29.79 39.04 2.15
82 83 1.266175 GGACGATCGGTATCACGTGAT 59.734 52.381 31.93 31.93 39.04 3.06
83 84 0.659427 GGACGATCGGTATCACGTGA 59.341 55.000 22.48 22.48 39.04 4.35
84 85 0.661552 AGGACGATCGGTATCACGTG 59.338 55.000 20.98 9.94 39.04 4.49
85 86 1.386533 AAGGACGATCGGTATCACGT 58.613 50.000 20.98 0.00 41.57 4.49
86 87 2.117137 CAAAGGACGATCGGTATCACG 58.883 52.381 20.98 0.00 31.93 4.35
87 88 3.160777 ACAAAGGACGATCGGTATCAC 57.839 47.619 20.98 2.62 31.93 3.06
88 89 3.880047 AACAAAGGACGATCGGTATCA 57.120 42.857 20.98 0.00 31.93 2.15
89 90 4.868734 AGAAAACAAAGGACGATCGGTATC 59.131 41.667 20.98 7.90 0.00 2.24
90 91 4.630069 CAGAAAACAAAGGACGATCGGTAT 59.370 41.667 20.98 0.00 0.00 2.73
91 92 3.991773 CAGAAAACAAAGGACGATCGGTA 59.008 43.478 20.98 0.00 0.00 4.02
92 93 2.806244 CAGAAAACAAAGGACGATCGGT 59.194 45.455 20.98 4.89 0.00 4.69
93 94 3.064207 TCAGAAAACAAAGGACGATCGG 58.936 45.455 20.98 2.40 0.00 4.18
94 95 4.928661 ATCAGAAAACAAAGGACGATCG 57.071 40.909 14.88 14.88 0.00 3.69
95 96 6.487689 AGAATCAGAAAACAAAGGACGATC 57.512 37.500 0.00 0.00 0.00 3.69
96 97 6.486657 TGAAGAATCAGAAAACAAAGGACGAT 59.513 34.615 0.00 0.00 0.00 3.73
97 98 5.820423 TGAAGAATCAGAAAACAAAGGACGA 59.180 36.000 0.00 0.00 0.00 4.20
98 99 5.909610 GTGAAGAATCAGAAAACAAAGGACG 59.090 40.000 0.00 0.00 35.88 4.79
99 100 5.909610 CGTGAAGAATCAGAAAACAAAGGAC 59.090 40.000 0.00 0.00 35.88 3.85
100 101 5.008613 CCGTGAAGAATCAGAAAACAAAGGA 59.991 40.000 0.00 0.00 35.88 3.36
101 102 5.215160 CCGTGAAGAATCAGAAAACAAAGG 58.785 41.667 0.00 0.00 35.88 3.11
102 103 5.215160 CCCGTGAAGAATCAGAAAACAAAG 58.785 41.667 0.00 0.00 35.88 2.77
103 104 4.642885 ACCCGTGAAGAATCAGAAAACAAA 59.357 37.500 0.00 0.00 35.88 2.83
104 105 4.204012 ACCCGTGAAGAATCAGAAAACAA 58.796 39.130 0.00 0.00 35.88 2.83
105 106 3.813166 GACCCGTGAAGAATCAGAAAACA 59.187 43.478 0.00 0.00 35.88 2.83
106 107 3.120649 CGACCCGTGAAGAATCAGAAAAC 60.121 47.826 0.00 0.00 35.88 2.43
107 108 3.064207 CGACCCGTGAAGAATCAGAAAA 58.936 45.455 0.00 0.00 35.88 2.29
108 109 2.611971 CCGACCCGTGAAGAATCAGAAA 60.612 50.000 0.00 0.00 35.88 2.52
109 110 1.067142 CCGACCCGTGAAGAATCAGAA 60.067 52.381 0.00 0.00 35.88 3.02
110 111 0.530744 CCGACCCGTGAAGAATCAGA 59.469 55.000 0.00 0.00 35.88 3.27
111 112 0.530744 TCCGACCCGTGAAGAATCAG 59.469 55.000 0.00 0.00 35.88 2.90
112 113 0.970640 TTCCGACCCGTGAAGAATCA 59.029 50.000 0.00 0.00 0.00 2.57
113 114 1.337447 TGTTCCGACCCGTGAAGAATC 60.337 52.381 0.00 0.00 0.00 2.52
114 115 0.682852 TGTTCCGACCCGTGAAGAAT 59.317 50.000 0.00 0.00 0.00 2.40
115 116 0.464870 TTGTTCCGACCCGTGAAGAA 59.535 50.000 0.00 0.00 0.00 2.52
116 117 0.464870 TTTGTTCCGACCCGTGAAGA 59.535 50.000 0.00 0.00 0.00 2.87
117 118 0.865769 CTTTGTTCCGACCCGTGAAG 59.134 55.000 0.00 0.00 0.00 3.02
118 119 0.178533 ACTTTGTTCCGACCCGTGAA 59.821 50.000 0.00 0.00 0.00 3.18
119 120 0.178533 AACTTTGTTCCGACCCGTGA 59.821 50.000 0.00 0.00 0.00 4.35
120 121 0.584876 GAACTTTGTTCCGACCCGTG 59.415 55.000 0.00 0.00 0.00 4.94
121 122 0.466963 AGAACTTTGTTCCGACCCGT 59.533 50.000 6.80 0.00 0.00 5.28
122 123 1.145803 GAGAACTTTGTTCCGACCCG 58.854 55.000 6.80 0.00 0.00 5.28
123 124 2.545537 AGAGAACTTTGTTCCGACCC 57.454 50.000 6.80 0.00 0.00 4.46
124 125 4.084693 CGTAAAGAGAACTTTGTTCCGACC 60.085 45.833 6.80 0.00 44.67 4.79
125 126 4.084693 CCGTAAAGAGAACTTTGTTCCGAC 60.085 45.833 6.80 0.83 44.67 4.79
126 127 4.053295 CCGTAAAGAGAACTTTGTTCCGA 58.947 43.478 6.80 0.00 44.67 4.55
127 128 3.185797 CCCGTAAAGAGAACTTTGTTCCG 59.814 47.826 6.80 3.11 44.67 4.30
128 129 4.383173 TCCCGTAAAGAGAACTTTGTTCC 58.617 43.478 6.80 0.25 44.67 3.62
129 130 5.699458 TGATCCCGTAAAGAGAACTTTGTTC 59.301 40.000 0.00 2.54 44.67 3.18
130 131 5.617252 TGATCCCGTAAAGAGAACTTTGTT 58.383 37.500 0.00 0.00 44.67 2.83
131 132 5.223449 TGATCCCGTAAAGAGAACTTTGT 57.777 39.130 0.00 0.00 44.67 2.83
132 133 4.631813 CCTGATCCCGTAAAGAGAACTTTG 59.368 45.833 0.00 0.00 44.67 2.77
133 134 4.286291 ACCTGATCCCGTAAAGAGAACTTT 59.714 41.667 0.00 0.00 46.36 2.66
134 135 3.838903 ACCTGATCCCGTAAAGAGAACTT 59.161 43.478 0.00 0.00 38.05 2.66
135 136 3.195825 CACCTGATCCCGTAAAGAGAACT 59.804 47.826 0.00 0.00 0.00 3.01
136 137 3.522553 CACCTGATCCCGTAAAGAGAAC 58.477 50.000 0.00 0.00 0.00 3.01
137 138 2.500098 CCACCTGATCCCGTAAAGAGAA 59.500 50.000 0.00 0.00 0.00 2.87
138 139 2.108168 CCACCTGATCCCGTAAAGAGA 58.892 52.381 0.00 0.00 0.00 3.10
139 140 1.139058 CCCACCTGATCCCGTAAAGAG 59.861 57.143 0.00 0.00 0.00 2.85
140 141 1.200519 CCCACCTGATCCCGTAAAGA 58.799 55.000 0.00 0.00 0.00 2.52
141 142 0.180406 CCCCACCTGATCCCGTAAAG 59.820 60.000 0.00 0.00 0.00 1.85
142 143 0.252789 TCCCCACCTGATCCCGTAAA 60.253 55.000 0.00 0.00 0.00 2.01
143 144 0.030501 ATCCCCACCTGATCCCGTAA 60.031 55.000 0.00 0.00 0.00 3.18
144 145 0.861854 TATCCCCACCTGATCCCGTA 59.138 55.000 0.00 0.00 0.00 4.02
145 146 0.030501 TTATCCCCACCTGATCCCGT 60.031 55.000 0.00 0.00 0.00 5.28
146 147 1.136828 TTTATCCCCACCTGATCCCG 58.863 55.000 0.00 0.00 0.00 5.14
147 148 3.052869 ACTTTTTATCCCCACCTGATCCC 60.053 47.826 0.00 0.00 0.00 3.85
148 149 4.251103 ACTTTTTATCCCCACCTGATCC 57.749 45.455 0.00 0.00 0.00 3.36
149 150 6.424032 AGTAACTTTTTATCCCCACCTGATC 58.576 40.000 0.00 0.00 0.00 2.92
150 151 6.402981 AGTAACTTTTTATCCCCACCTGAT 57.597 37.500 0.00 0.00 0.00 2.90
151 152 5.853572 AGTAACTTTTTATCCCCACCTGA 57.146 39.130 0.00 0.00 0.00 3.86
152 153 6.911250 AAAGTAACTTTTTATCCCCACCTG 57.089 37.500 0.00 0.00 28.27 4.00
193 194 4.819761 TTGGCCTGCTAGCGCTCG 62.820 66.667 16.34 9.56 36.97 5.03
194 195 3.198489 GTTGGCCTGCTAGCGCTC 61.198 66.667 16.34 0.00 36.97 5.03
216 217 3.358076 AAGGACGCGTCTGGCTAGC 62.358 63.158 35.50 18.86 40.44 3.42
217 218 1.517257 CAAGGACGCGTCTGGCTAG 60.517 63.158 35.50 17.33 40.44 3.42
218 219 1.529152 TTCAAGGACGCGTCTGGCTA 61.529 55.000 35.50 17.58 40.44 3.93
219 220 2.377628 TTTCAAGGACGCGTCTGGCT 62.378 55.000 35.50 22.89 40.44 4.75
220 221 1.503818 TTTTCAAGGACGCGTCTGGC 61.504 55.000 35.50 21.02 38.69 4.85
221 222 0.941542 TTTTTCAAGGACGCGTCTGG 59.058 50.000 35.50 24.66 0.00 3.86
248 249 9.997172 AGAGGGAGTACATTCATATATACATGA 57.003 33.333 0.00 0.00 33.10 3.07
250 251 9.775539 ACAGAGGGAGTACATTCATATATACAT 57.224 33.333 0.00 0.00 0.00 2.29
251 252 9.601810 AACAGAGGGAGTACATTCATATATACA 57.398 33.333 0.00 0.00 0.00 2.29
254 255 8.964533 AGAACAGAGGGAGTACATTCATATAT 57.035 34.615 0.00 0.00 0.00 0.86
255 256 8.783660 AAGAACAGAGGGAGTACATTCATATA 57.216 34.615 0.00 0.00 0.00 0.86
256 257 7.682787 AAGAACAGAGGGAGTACATTCATAT 57.317 36.000 0.00 0.00 0.00 1.78
257 258 8.603898 TTAAGAACAGAGGGAGTACATTCATA 57.396 34.615 0.00 0.00 0.00 2.15
258 259 7.496346 TTAAGAACAGAGGGAGTACATTCAT 57.504 36.000 0.00 0.00 0.00 2.57
259 260 6.928348 TTAAGAACAGAGGGAGTACATTCA 57.072 37.500 0.00 0.00 0.00 2.57
266 267 9.495382 AGACTTATATTTAAGAACAGAGGGAGT 57.505 33.333 9.58 0.00 38.56 3.85
300 301 8.940952 GCTCCTTATGTATTCTGTATTGGAATC 58.059 37.037 0.00 0.00 35.40 2.52
301 302 8.439971 TGCTCCTTATGTATTCTGTATTGGAAT 58.560 33.333 0.00 0.00 37.24 3.01
302 303 7.801104 TGCTCCTTATGTATTCTGTATTGGAA 58.199 34.615 0.00 0.00 0.00 3.53
303 304 7.373617 TGCTCCTTATGTATTCTGTATTGGA 57.626 36.000 0.00 0.00 0.00 3.53
304 305 8.450578 TTTGCTCCTTATGTATTCTGTATTGG 57.549 34.615 0.00 0.00 0.00 3.16
307 308 9.851686 TCATTTTGCTCCTTATGTATTCTGTAT 57.148 29.630 0.00 0.00 0.00 2.29
308 309 9.330063 CTCATTTTGCTCCTTATGTATTCTGTA 57.670 33.333 0.00 0.00 0.00 2.74
309 310 7.831193 ACTCATTTTGCTCCTTATGTATTCTGT 59.169 33.333 0.00 0.00 0.00 3.41
310 311 8.127327 CACTCATTTTGCTCCTTATGTATTCTG 58.873 37.037 0.00 0.00 0.00 3.02
311 312 8.049117 TCACTCATTTTGCTCCTTATGTATTCT 58.951 33.333 0.00 0.00 0.00 2.40
312 313 8.213518 TCACTCATTTTGCTCCTTATGTATTC 57.786 34.615 0.00 0.00 0.00 1.75
313 314 8.579850 TTCACTCATTTTGCTCCTTATGTATT 57.420 30.769 0.00 0.00 0.00 1.89
314 315 8.757982 ATTCACTCATTTTGCTCCTTATGTAT 57.242 30.769 0.00 0.00 0.00 2.29
315 316 8.049117 AGATTCACTCATTTTGCTCCTTATGTA 58.951 33.333 0.00 0.00 0.00 2.29
316 317 6.888632 AGATTCACTCATTTTGCTCCTTATGT 59.111 34.615 0.00 0.00 0.00 2.29
317 318 7.330900 AGATTCACTCATTTTGCTCCTTATG 57.669 36.000 0.00 0.00 0.00 1.90
318 319 8.049117 TGTAGATTCACTCATTTTGCTCCTTAT 58.951 33.333 0.00 0.00 0.00 1.73
319 320 7.334421 GTGTAGATTCACTCATTTTGCTCCTTA 59.666 37.037 0.00 0.00 35.68 2.69
320 321 6.150140 GTGTAGATTCACTCATTTTGCTCCTT 59.850 38.462 0.00 0.00 35.68 3.36
321 322 5.645497 GTGTAGATTCACTCATTTTGCTCCT 59.355 40.000 0.00 0.00 35.68 3.69
322 323 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
323 324 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
353 354 9.281371 GGCTACATACGGATGTATATAGACATA 57.719 37.037 20.64 0.00 43.01 2.29
354 355 7.230913 GGGCTACATACGGATGTATATAGACAT 59.769 40.741 20.64 12.70 44.57 3.06
355 356 6.544931 GGGCTACATACGGATGTATATAGACA 59.455 42.308 20.64 2.07 44.57 3.41
356 357 6.544931 TGGGCTACATACGGATGTATATAGAC 59.455 42.308 20.64 12.94 42.85 2.59
357 358 6.665695 TGGGCTACATACGGATGTATATAGA 58.334 40.000 20.64 0.00 45.42 1.98
358 359 6.954487 TGGGCTACATACGGATGTATATAG 57.046 41.667 20.64 12.04 45.42 1.31
359 360 9.596308 AATATGGGCTACATACGGATGTATATA 57.404 33.333 20.64 15.64 45.42 0.86
360 361 8.367911 CAATATGGGCTACATACGGATGTATAT 58.632 37.037 20.64 13.01 45.42 0.86
361 362 7.562088 TCAATATGGGCTACATACGGATGTATA 59.438 37.037 20.64 11.30 45.42 1.47
362 363 6.382859 TCAATATGGGCTACATACGGATGTAT 59.617 38.462 20.64 9.39 45.42 2.29
363 364 5.717654 TCAATATGGGCTACATACGGATGTA 59.282 40.000 19.32 19.32 44.77 2.29
365 366 5.084818 TCAATATGGGCTACATACGGATG 57.915 43.478 5.94 5.94 44.41 3.51
366 367 5.755409 TTCAATATGGGCTACATACGGAT 57.245 39.130 4.22 0.00 44.41 4.18
367 368 5.554437 TTTCAATATGGGCTACATACGGA 57.446 39.130 4.22 3.27 44.41 4.69
368 369 6.173339 AGATTTCAATATGGGCTACATACGG 58.827 40.000 4.22 1.38 44.41 4.02
369 370 7.099764 AGAGATTTCAATATGGGCTACATACG 58.900 38.462 4.22 0.00 44.41 3.06
370 371 9.944376 TTAGAGATTTCAATATGGGCTACATAC 57.056 33.333 4.22 0.00 44.41 2.39
372 373 9.866655 TTTTAGAGATTTCAATATGGGCTACAT 57.133 29.630 0.46 0.46 43.68 2.29
373 374 9.693739 TTTTTAGAGATTTCAATATGGGCTACA 57.306 29.630 0.00 0.00 0.00 2.74
397 398 9.350951 CCCTCCGTTCCTAAATATAATTCTTTT 57.649 33.333 0.00 0.00 0.00 2.27
398 399 8.720537 TCCCTCCGTTCCTAAATATAATTCTTT 58.279 33.333 0.00 0.00 0.00 2.52
399 400 8.271398 TCCCTCCGTTCCTAAATATAATTCTT 57.729 34.615 0.00 0.00 0.00 2.52
400 401 7.513091 ACTCCCTCCGTTCCTAAATATAATTCT 59.487 37.037 0.00 0.00 0.00 2.40
401 402 7.677892 ACTCCCTCCGTTCCTAAATATAATTC 58.322 38.462 0.00 0.00 0.00 2.17
402 403 7.628501 ACTCCCTCCGTTCCTAAATATAATT 57.371 36.000 0.00 0.00 0.00 1.40
403 404 8.175431 TCTACTCCCTCCGTTCCTAAATATAAT 58.825 37.037 0.00 0.00 0.00 1.28
404 405 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
405 406 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
406 407 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
407 408 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
408 409 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
409 410 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
410 411 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
411 412 3.203710 TCATTCTACTCCCTCCGTTCCTA 59.796 47.826 0.00 0.00 0.00 2.94
412 413 2.024273 TCATTCTACTCCCTCCGTTCCT 60.024 50.000 0.00 0.00 0.00 3.36
413 414 2.385803 TCATTCTACTCCCTCCGTTCC 58.614 52.381 0.00 0.00 0.00 3.62
414 415 4.467198 TTTCATTCTACTCCCTCCGTTC 57.533 45.455 0.00 0.00 0.00 3.95
415 416 6.555463 TTATTTCATTCTACTCCCTCCGTT 57.445 37.500 0.00 0.00 0.00 4.44
416 417 6.555463 TTTATTTCATTCTACTCCCTCCGT 57.445 37.500 0.00 0.00 0.00 4.69
417 418 6.651225 GGATTTATTTCATTCTACTCCCTCCG 59.349 42.308 0.00 0.00 0.00 4.63
418 419 7.518188 TGGATTTATTTCATTCTACTCCCTCC 58.482 38.462 0.00 0.00 0.00 4.30
419 420 8.980481 TTGGATTTATTTCATTCTACTCCCTC 57.020 34.615 0.00 0.00 0.00 4.30
420 421 9.768215 TTTTGGATTTATTTCATTCTACTCCCT 57.232 29.630 0.00 0.00 0.00 4.20
514 515 9.549923 CGTTTTGTTTCATTTCTTTTCGTATTC 57.450 29.630 0.00 0.00 0.00 1.75
515 516 9.078753 ACGTTTTGTTTCATTTCTTTTCGTATT 57.921 25.926 0.00 0.00 0.00 1.89
516 517 8.623310 ACGTTTTGTTTCATTTCTTTTCGTAT 57.377 26.923 0.00 0.00 0.00 3.06
517 518 9.212687 CTACGTTTTGTTTCATTTCTTTTCGTA 57.787 29.630 0.00 0.00 0.00 3.43
518 519 6.937886 ACGTTTTGTTTCATTTCTTTTCGT 57.062 29.167 0.00 0.00 0.00 3.85
519 520 8.318000 TCTACGTTTTGTTTCATTTCTTTTCG 57.682 30.769 0.00 0.00 0.00 3.46
521 522 9.849166 TCTTCTACGTTTTGTTTCATTTCTTTT 57.151 25.926 0.00 0.00 0.00 2.27
522 523 9.849166 TTCTTCTACGTTTTGTTTCATTTCTTT 57.151 25.926 0.00 0.00 0.00 2.52
523 524 9.849166 TTTCTTCTACGTTTTGTTTCATTTCTT 57.151 25.926 0.00 0.00 0.00 2.52
524 525 9.849166 TTTTCTTCTACGTTTTGTTTCATTTCT 57.151 25.926 0.00 0.00 0.00 2.52
623 624 1.165270 CGCCGGTCTTCTCCATTTTT 58.835 50.000 1.90 0.00 0.00 1.94
624 625 1.305930 GCGCCGGTCTTCTCCATTTT 61.306 55.000 1.90 0.00 0.00 1.82
625 626 1.745489 GCGCCGGTCTTCTCCATTT 60.745 57.895 1.90 0.00 0.00 2.32
626 627 2.125106 GCGCCGGTCTTCTCCATT 60.125 61.111 1.90 0.00 0.00 3.16
627 628 4.162690 GGCGCCGGTCTTCTCCAT 62.163 66.667 12.58 0.00 0.00 3.41
643 644 3.628646 CTTCTTGGGGGCTGTCGGG 62.629 68.421 0.00 0.00 0.00 5.14
644 645 2.045926 CTTCTTGGGGGCTGTCGG 60.046 66.667 0.00 0.00 0.00 4.79
645 646 2.747855 GCTTCTTGGGGGCTGTCG 60.748 66.667 0.00 0.00 0.00 4.35
646 647 2.361737 GGCTTCTTGGGGGCTGTC 60.362 66.667 0.00 0.00 0.00 3.51
647 648 3.984732 GGGCTTCTTGGGGGCTGT 61.985 66.667 0.00 0.00 0.00 4.40
648 649 3.951769 CTGGGCTTCTTGGGGGCTG 62.952 68.421 0.00 0.00 0.00 4.85
649 650 3.665971 CTGGGCTTCTTGGGGGCT 61.666 66.667 0.00 0.00 0.00 5.19
650 651 3.946126 GACTGGGCTTCTTGGGGGC 62.946 68.421 0.00 0.00 0.00 5.80
651 652 2.080336 TTGACTGGGCTTCTTGGGGG 62.080 60.000 0.00 0.00 0.00 5.40
652 653 0.178964 TTTGACTGGGCTTCTTGGGG 60.179 55.000 0.00 0.00 0.00 4.96
653 654 0.961753 GTTTGACTGGGCTTCTTGGG 59.038 55.000 0.00 0.00 0.00 4.12
654 655 0.593128 CGTTTGACTGGGCTTCTTGG 59.407 55.000 0.00 0.00 0.00 3.61
655 656 0.593128 CCGTTTGACTGGGCTTCTTG 59.407 55.000 0.00 0.00 0.00 3.02
656 657 0.472471 TCCGTTTGACTGGGCTTCTT 59.528 50.000 0.00 0.00 0.00 2.52
657 658 0.035458 CTCCGTTTGACTGGGCTTCT 59.965 55.000 0.00 0.00 0.00 2.85
673 674 3.086600 AGTAGCCCAGCCAGCTCC 61.087 66.667 0.00 0.00 41.83 4.70
699 701 1.308998 CCCGGCCTGCTTAATTAGTG 58.691 55.000 0.00 0.00 0.00 2.74
745 747 0.247736 TTCTCTCCGCTTCTTCTGCC 59.752 55.000 0.00 0.00 0.00 4.85
757 759 3.126000 CGAAGCAAAGGATTGTTCTCTCC 59.874 47.826 0.00 0.00 38.85 3.71
807 809 2.455032 CGAGTTCAGATCGATGGACAC 58.545 52.381 0.54 0.00 42.76 3.67
855 872 2.135903 TTGAGGATGCGGGCAAAGGA 62.136 55.000 0.00 0.00 0.00 3.36
856 873 1.660560 CTTGAGGATGCGGGCAAAGG 61.661 60.000 0.00 0.00 0.00 3.11
857 874 1.805254 CTTGAGGATGCGGGCAAAG 59.195 57.895 0.00 0.00 0.00 2.77
858 875 2.342650 GCTTGAGGATGCGGGCAAA 61.343 57.895 0.00 0.00 0.00 3.68
859 876 2.751436 GCTTGAGGATGCGGGCAA 60.751 61.111 0.00 0.00 0.00 4.52
860 877 4.802051 GGCTTGAGGATGCGGGCA 62.802 66.667 0.00 0.00 0.00 5.36
867 884 0.249657 GCGATTCGAGGCTTGAGGAT 60.250 55.000 10.88 0.00 0.00 3.24
888 905 1.742761 ATGGAATGACAGAGGTTGCG 58.257 50.000 0.00 0.00 0.00 4.85
894 911 2.158696 GGGGAGGAATGGAATGACAGAG 60.159 54.545 0.00 0.00 0.00 3.35
895 912 1.846439 GGGGAGGAATGGAATGACAGA 59.154 52.381 0.00 0.00 0.00 3.41
899 916 1.011293 AGGAGGGGAGGAATGGAATGA 59.989 52.381 0.00 0.00 0.00 2.57
908 930 3.992641 TGCGTGAGGAGGGGAGGA 61.993 66.667 0.00 0.00 0.00 3.71
919 941 2.736995 GGTAGCTTGCGTGCGTGA 60.737 61.111 0.00 0.00 38.13 4.35
1067 1096 2.415426 GGCGGTGGTTGTTGTTGG 59.585 61.111 0.00 0.00 0.00 3.77
1068 1097 2.025441 CGGCGGTGGTTGTTGTTG 59.975 61.111 0.00 0.00 0.00 3.33
1196 1228 1.003839 TGATGACGGTGGTCTTGCC 60.004 57.895 0.00 0.00 43.79 4.52
1300 1332 4.049817 ACCTCCTCGTCCTCGCCT 62.050 66.667 0.00 0.00 36.96 5.52
1524 1559 6.072286 ACCAAATTGAGTAGAAGCAGAACATG 60.072 38.462 0.00 0.00 0.00 3.21
1553 1588 0.807667 CTGAAGAAGCCACCGATCGG 60.808 60.000 32.20 32.20 42.03 4.18
1556 1595 1.078143 GCCTGAAGAAGCCACCGAT 60.078 57.895 0.00 0.00 0.00 4.18
1571 1610 1.377725 CAGCATCTCCAAACGGCCT 60.378 57.895 0.00 0.00 0.00 5.19
1578 1617 1.136305 GGTAGTACGCAGCATCTCCAA 59.864 52.381 0.00 0.00 0.00 3.53
1622 1661 9.249457 TGATCAAACGCTTATGTAGATAGAAAG 57.751 33.333 0.00 0.00 0.00 2.62
1630 1669 5.200454 GTGCATGATCAAACGCTTATGTAG 58.800 41.667 14.07 0.00 0.00 2.74
1631 1670 4.633565 TGTGCATGATCAAACGCTTATGTA 59.366 37.500 14.07 0.00 0.00 2.29
1632 1671 3.439825 TGTGCATGATCAAACGCTTATGT 59.560 39.130 14.07 0.00 0.00 2.29
1633 1672 4.018649 TGTGCATGATCAAACGCTTATG 57.981 40.909 14.07 1.35 0.00 1.90
1763 1810 2.930682 CGTGACCTTAAAAGCTAGGAGC 59.069 50.000 7.28 0.03 42.84 4.70
1783 1830 1.438651 AACACATTCCACGTGGATCG 58.561 50.000 36.52 29.79 44.98 3.69
1784 1831 2.811431 TCAAACACATTCCACGTGGATC 59.189 45.455 36.52 0.00 44.98 3.36
1785 1832 2.857483 TCAAACACATTCCACGTGGAT 58.143 42.857 36.52 23.11 44.98 3.41
1786 1833 2.333688 TCAAACACATTCCACGTGGA 57.666 45.000 33.23 33.23 43.73 4.02
1794 1847 4.874970 ACAGATTGGCTTCAAACACATTC 58.125 39.130 0.00 0.00 33.67 2.67
1878 1940 3.715628 AATTGCATAAGAATCACCGGC 57.284 42.857 0.00 0.00 0.00 6.13
1906 1968 3.567164 ACAAAGACTTTCATGTCAGCCTG 59.433 43.478 0.00 0.00 39.27 4.85
1940 2002 8.691661 AGTGGTCTTTTGTAAACATAATCTGT 57.308 30.769 0.00 0.00 40.84 3.41
1947 2009 4.141018 AGGGGAGTGGTCTTTTGTAAACAT 60.141 41.667 0.00 0.00 0.00 2.71
1954 2016 4.367039 TTTAGAGGGGAGTGGTCTTTTG 57.633 45.455 0.00 0.00 0.00 2.44
2000 2062 9.807649 AGTGCATTATAAAGAAAATGTTCATCC 57.192 29.630 0.00 0.00 35.86 3.51
2013 2075 8.816640 AAAAAGGTTCACAGTGCATTATAAAG 57.183 30.769 0.00 0.00 0.00 1.85
2092 2154 9.953697 TTGTGTATTATACAAAAAGTTCACCAC 57.046 29.630 6.64 0.00 40.93 4.16
2207 2270 4.942483 TGGTTTTCTTAGTGTTTTGTCCGA 59.058 37.500 0.00 0.00 0.00 4.55
2209 2272 7.381408 GCTTATGGTTTTCTTAGTGTTTTGTCC 59.619 37.037 0.00 0.00 0.00 4.02
2213 2276 9.830975 ATTTGCTTATGGTTTTCTTAGTGTTTT 57.169 25.926 0.00 0.00 0.00 2.43
2263 2326 3.040147 TGGTCCGACATCTTTTCTCAC 57.960 47.619 0.00 0.00 0.00 3.51
2264 2327 3.071023 AGTTGGTCCGACATCTTTTCTCA 59.929 43.478 12.05 0.00 0.00 3.27
2279 2342 2.358737 CGGTGGAGCCAGTTGGTC 60.359 66.667 0.00 0.00 40.86 4.02
2298 2361 1.076533 AAGTAGTCGACGCAATGCCG 61.077 55.000 10.46 0.00 0.00 5.69
2306 2369 1.805945 GGGCAGCAAGTAGTCGACG 60.806 63.158 10.46 0.00 0.00 5.12
2307 2370 1.014564 GTGGGCAGCAAGTAGTCGAC 61.015 60.000 7.70 7.70 0.00 4.20
2313 2376 3.246112 ACCCGTGGGCAGCAAGTA 61.246 61.111 4.41 0.00 39.32 2.24
2325 2388 1.205460 AGGTCCTATTTGCCACCCGT 61.205 55.000 0.00 0.00 0.00 5.28
2384 2447 2.577449 AGCAAACTTGTTTGAACCCG 57.423 45.000 24.85 3.24 33.95 5.28
2449 2512 1.457604 CATCCATCGAGGGCCCATT 59.542 57.895 27.56 2.92 38.24 3.16
2450 2513 3.164479 CATCCATCGAGGGCCCAT 58.836 61.111 27.56 9.36 38.24 4.00
2457 2520 0.755079 TTCCTCCTGCATCCATCGAG 59.245 55.000 0.00 0.00 0.00 4.04
2464 2527 3.365364 CGAAGTTTTGTTCCTCCTGCATC 60.365 47.826 0.00 0.00 0.00 3.91
2477 2540 0.666374 GTGGGGGTGTCGAAGTTTTG 59.334 55.000 0.00 0.00 0.00 2.44
2485 2548 0.960364 CCAAATCTGTGGGGGTGTCG 60.960 60.000 0.00 0.00 34.77 4.35
2508 2571 7.717875 AGCACCTGTGTAGAACTTAAAACAATA 59.282 33.333 0.00 0.00 0.00 1.90
2516 2579 5.433526 ACAAAAGCACCTGTGTAGAACTTA 58.566 37.500 0.00 0.00 0.00 2.24
2518 2581 3.886123 ACAAAAGCACCTGTGTAGAACT 58.114 40.909 0.00 0.00 0.00 3.01
2519 2582 5.744666 TTACAAAAGCACCTGTGTAGAAC 57.255 39.130 0.00 0.00 0.00 3.01
2525 2588 4.320608 AACCATTACAAAAGCACCTGTG 57.679 40.909 0.00 0.00 0.00 3.66
2527 2590 4.057432 CCAAACCATTACAAAAGCACCTG 58.943 43.478 0.00 0.00 0.00 4.00
2528 2591 3.494223 GCCAAACCATTACAAAAGCACCT 60.494 43.478 0.00 0.00 0.00 4.00
2540 2603 9.297037 GTCATATATTAAGTAGGCCAAACCATT 57.703 33.333 5.01 0.00 43.14 3.16
2550 2613 7.393515 GGGCCAAAAGGTCATATATTAAGTAGG 59.606 40.741 4.39 0.00 0.00 3.18
2595 2658 6.879962 TGTGGACTAAAATAAGAACGTTTCG 58.120 36.000 0.46 0.00 34.02 3.46
2606 2669 5.973899 TGCTTGCAATGTGGACTAAAATA 57.026 34.783 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.