>input_sequence_72836
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----------------------------------------------------------------ACCCATCCATCCATC-
---GATCCATCAGCCTCCATTGCTAGCCAGCCACCCCCATTACTCTCCACCTAGCCCAACAACAACCACCGCCGCCGCTG
CCATGGCTTCCAACAACACCACCAACGCGGCCTCCGAGGTGAGCAACGCCATCACCGACCTCAACGACCACCTGGCCACC
GCCCTCGGCGCCGGCGACGAG---GCCGGCAAGACCACCGTCATCACGCTGGCGGGGGAGAACAACGGCGCGGCCATGGA
CGCGGAGGACCTGGTCGTCGTCGAGGCCGGCGGCGAGGGGGACGAGGAGGAAGGCGAGGACGAGGAGGTGCACGTGGCCG
CCTACACCAACAGCAACTACCAGGCGGTGAACAACTCGGTGCTCCTCGCCGGCAGCTGCGCCGTCAGGGACCCCGGCGTC
CACGTCGTCATCGTGGAGCACGTCGACGACATCCGCGACTGCGACGGCGACGAGATCTTCGAGGACGGTGAGGTGGCCAA
GTGAGCCAATCTATC---GAGCGGTGCGGATGACGATGCATGTTCTGCTTCTACTCAATTTGGTCGGC----CGATCGGT
GGCTTCTTCAGGCCGTTTGGAGATGCTGCGTACTACCCTGAGTCGTTTGGAGTTTATTTACTTTCTATCTACATAAGCGT
TTGATCA-------------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G051400
TTTCTTTCGTTGAGAAGAAGGATCCCTGTGGAGAAGGAAGTGTGGGCGAGGGGTGCGTGGAGGCTTCGGGAGTTAGTGCG
CTATCACGTGATACCGATCGTCCTTTGTTTTCTGATTCTTCACGGGTCGGAACAAAGTTCTCTTTACGGGATCAGGTGGG
GATAAAAAGTTACTTTTTTCGGCTGGCCGCTCGCGAGCGCTAGCAGGCCAACGGCCGCTAGCCAGACGCGTCCTTGAAAA
AATGTTGATCATGTATATATGAATGTACTCCCTCTGTTCTTAAATATAAGTCTTTTTAGAGATTCCAATACAGAATACAT
AAGGAGCAAAATGAGTGAATCTACACTCTAAAATATGTCTATATACATCCGTATGTAGCCCATATTGAAATCTCTAAAAA
AGAATTATATTTAGGAACGGAGGGAGTAGAATGAAATAAATCCAAAAAAAAGTGTAGAAGGAAAAAGAAAAAAAATATGA
AAAAAACAGAGAAGAATAAAGAAATGAAACAAAAGAATACGAAAAGAAATGAAACAAAACGTAGAAGAAAAAATAAAGAA
TGAAAAAATTGAGCGGAGAAAAAAATAAATAAAACAAAAGAAAAGAAAACGAAAAAAGAAGGAAAAAATGGAGAAGACCG
GCGCCCGACAGCCCCCAAGAAGCCCAGTCAAACGGAGCTGG-CTGGGCTACTGCTTACTCCACTAATTAAGCAGGCCGGG
CTCAACTGGAGCCCAGTTCAAACGGCGGCAGAAGAAGCGGAGAGAACAATCCTTTGCTTCGGTCCGAAGTCACTTGACGA
GCGGCGGCGTGTCCATCGATCTGAACTCGGCCG---------------AGAAAACAATCCATGGATCCTTTTCCTTTGCC
CGCATCCTCAAGCCTCGAATCGCTCGCAACCTCTGT-----CATTCCATTCCTCCCCTCCTCACGCACGCAAGCTACCCG
CCTCCCTCCTCCC---CTGCCCTCCTCTGCTATATATGCTCCCCGCCATGGACACCCTACTCCCACCCATCCATCCATC-
---GATCCATCAGCCTCCATTGCTAGCCAGCCACCCCCATTACTCTCCACCTAGCCCAACAACAACCACCGCCGCCGCTG
CCATGGCTTCCAACAACACCACCAACGCGGCCTCCGAGGTGAGCAACGCCATCACCGACCTCAACGACCACCTGGCCACC
GCCCTCGGCGCCGGCGACGAG---GCCGGCAAGACCACCGTCATCACGCTGGCGGGGGAGAACAACGGCGCGGCCATGGA
CGCGGAGGACCTGGTCGTCGTCGAGGCCGGCGGCGAGGGGGACGAGGAGGAAGGCGAGGACGAGGAGGTGCACGTGGCCG
CCTACACCAACAGCAACTACCAGGCGGTGAACAACTCGGTGCTCCTCGCCGGCAGCTGCGCCGTCAGGGACCCCGGCGTC
CACGTCGTCATCGTGGAGCACGTCGACGACATCCGCGACTGCGACGGCGACGAGATCTTCGAGGACGGTGAGGTGGCCAA
GTGAGCCAATCTATC---GAGCGGTGCGGATGACGATGCATGTTCTGCTTCTACTCAATTTGGTCGGC----CGATCGGT
GGCTTCTTCAGGCCGTTTGGAGATGCTGCGTACTACCCTGAGTCGTTTGGAGTTTATTTACTTTCTATCTACATAAGCGT
TTGATCATGCACATGTATGCATGTGTTTATGTATTGCATTTATATGTATACGTCCT---AGTGTCTG-----AAAACATA
TTTGTATGTTATGTAAGTTTGCTTCATGTGCGGTTCTGAAATATTCACTGCTCCTAGCTTTTAAGGTCACGAT-CCAC--
---GTGGAATGTGTTTGAAGCCAATCTGTTTCAGGCTCACTTTT---------TATGTAACTGCTTTCGACCATTAATTT
AACAGCAATGCTACGGATTGCCGGTGATTCTTATGCAATTAGTTTTACAGGCTGACATGAAAGTCTTTGTTTTTTTAGAT
TACAGATTATGTTTACAAAAGACCACTCCCCTCTAAATACGTTGAATTTTTTTTTAATACAGGATGAACATTTTCTTTAT
AATGCACTGTGAACCTTTTTACTATATATAGAGTTAACATCTTCTTAATATATGATGAACATTTTTGTAATACGTGGTGA
ACTTTTTGTATAATACACAAAAAAAGAGAAGAAAAAACTAAAATGAAAAAAGAAAAACAACAAAGAAAAAGAAATCAAAA
CAAAAA-ACCGAAACAAAACCACTGAAAATCGGACAAAACACTAAGAAAACCATAAGCAAATCCCTACAGAAGAAAGAAG
ATGCAGTGAGAAAAGATGTCGGACCAACTGGCTCCACCGCCGGCATTGCGTCGACTACTTGCTGCCCACGGGTGGCAAAT
AGGACCTGTTATCAGTGACTTCCTAGTCACTACTTCTACAAGCTCTCGGGTTCAAACAAGTTTGCTATGTTAAGACAGAG
GCCTGGAGAGACGACAACGAGTTTTCCTCACAATGGGCCCTCGATGGATGCAGGAGGAACAAAACTTCGACACCCCCACA
GATTTGGATGTATTGTTTTAAGTTCTACACAGGTGCTTTTGTAATGGTTTGGCCTACTTAATATATGACCTTTTGGCCCT
TTCTCACAAAAAACTCACGAAACGTTCTTATTTTAGTCCACATTGCAAGCATGACACGCTGACTTAGCTCG
>chr2A_659
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------------------GAAGCCCGGTCAAACAGAGCTGGGCTGGGCTACTACTTACTCTACTAATTAAGCAGGCTGGG
CTCAACTGGAGCCCAGTTCAAACAGCTGCAGAAGAAGCAGAGGGAACAATCCTTTGCTTCGGTCCGAAGTCACTTGACGA
GTGGCGGCATGTCCATCGATCTGAACTCTGAACTCACCTGACCGACCAAGAAAACAATCCATGGATCCTTT------GCC
CGCGTCCTCAAGCCTCGAATCGCTTGCAACTCCTGCCATGCCATTCCATACCTCCCCTCCCCACGCACCCAAGCTACCCG
CCCCCCTCCTCCTCTGCTCCTCTCCTCTGCTATATATTCATCGCACCATGGACACCCTACTCCCACCCATCCATCCATCC
ATCGATCCATCAGCCTCCATTGCTAGCCAGCCACCCCCATTACTCTCCACCTAGCT---CAACCACCACCGCCGCCGCTG
CCATGGCTTCCAACAACAGCACCAACGCGGCCTCCGAGGTGAGCAACGCCATCACCGACCTCAACGACCACCTCGCCACC
GCCCTCGGCACCGGCGACGAG---G---GCAAGACCACCGTCATCACGCTGGCGGGGGAGAACAACGGCGCGGCCATGGA
CGCGGAGGACCTGGTCGTCGTCGAGGCCGGCGGCGAGGGGGACGAGGAGGAGGGCGAGGACGAGGAGGTGCACGTGGCCG
CCTACACCAACAGCAACTACCAGGCGGTGAACAACTCGGTGCTCCTCGCCGGCAGCTGCGCCGTCAGGGACCCCGGCGTC
CACGTCGTCATCGTGGAGCACGTCGACGACATCCGCGACTGCGACGGCGACGAGATCTTCGAGGACGGCGAGGTGGCCAA
GTGAGGCCATCTATC---GAGCGGTGCGGATGACG----ATGTTCTGCTTCTACTCAATTTGGTCGGTCGGTCGGTCGGT
GGCTTCTTCGGGCCGTCTGGAGATGCTGCGTACTACCATGAGTCGTTTGGAGTTTATTTAATTTCTAT----ATAAGCGT
TTGATCATGCACATGTATGCATATGTTTATGTATTGCATTTATATGTATACGTGCT---AGTGGGTGTCTGAAAAACATA
TTTGTATGTTATGTAAGTTTGCTTCATGTGCGGTTCTGAAATATTCACTACTCCTAGCTTTTAAGATCCATGACCCAC--
---GTGTAATGTGTTTGAAGCCAATGTGTTTCAGGCTCACTATTTCCCCGTAATATATAACTGCTA-CGACCAATAATTT
AACAG-AATGCTACG-----------------------------------------------------------------
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>chr2D_660
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-------------------AAGCCCAGTCAAACAGAGCTGGGCTGGGCTTGCACTTACTCTACTAGTTAAGCAGGCTGGG
CTCAACTGAAGCCCAGTTCAAACGGCTGCGGAAGAAGCAGAGAGAACAATCCTTTGCTTCGGTCCGAAGTCACTTCACGA
GCGGCGGCATGTCCATCGATCTGAACTCGGCCG---------------AGAAAACAATCCATGGATCCTTT------GCC
CGCGTCCTCAAGCCTCGAATCGCTTGCAACTCCTGCCATTCCATTCC-----TCCCCTCCCCACGCACGCAAGCTACCCG
CCTCCCTCCTCCC---CTGCCCTCCTCTCCTATATATGCTCCCCGCCATGGACGTGCTACTCCCACCCATCAATCCACCC
ATCCCTCAGCGCT----CATTGCTAGCCAGCCACCCCCATTACTCTCCACCTAGCTTAACAACCACCGCCGCCGCCGCTG
CTATGGCTTCCAACACCG---CCAACGCGGCCTCCGAGGTGAGCAACGCCATCACCGACCTCAACGACCACCTCGCCACC
GCCCTCGGAGCCGGCGACGAGGCCG---GCAAGACGACCGTCATCACGCTGGCGGGGGAGAACAACGGCGCCGTGATGGA
CGCGGAGGACCTGGTCGTTGTCGAGGCCGGCGGCGAGGGGGAGGAGGGCGAG---GAGGAGGAGGAGGTGCACGTGGCCG
CCTACACCAACAGCAACTACCAGGCGGTGAACAACTCGGTGCTCCTCGCCGGCAGCTGCGCCGTCAGGGACCCCGGCGTG
CACGTCGTCATCGTGGAGCACGTCGACGACATCCGCGACTGCGACGGCGACGAGATCTTCGAGGACGGTGAGGTGGCCAA
GTGAGGCCATCTATCATCGAGCGGTGCGGATGACG----ATGTTCTGCTTCTACTCAATTTGGTCGGTCGGTCGGTCGGT
GGCTTCTTCGGGCCGTCTGGAGATGTTGCGTACTACCCTGAGTCGTTTGGAGTTTATTTAATTTCTAT----ATGAGCGT
TTGATCATGCACATGTATGCATATGTTTATGTATTGCATTTATATGTATACGTCCTCCTAGTGTCTG-----CAAACATA
TTTGTATGTTATGTAAGTTTGCCTCATGTGCGGTTCTGAAATATTTGCCACTCCTAGCTTTTAAGGTCCATGACCGGACC
CATGTGTAATGTGTTTGAAGCCAATCTGTTTCAGGCTCACTTTT---------TATGTAACTGCTTTCGAGCATCAATTT
AACAGCAATGCTATGGATTACCGGTGATTCTTATGCAATTAGTTTTATAGGCTGACATGACAGTCTGTGTTTTCTTAGAT
TGCAGATTGTGTTTAGAAAAGACCACTCCCCTCTAAATACGTTGAATTT-TTTTTAATACACGATGAACATTTT-TTTAT
AATGCACGGTGAACCTTTTTATAATATAGGGTG--AACATCTTCTTAATATATGATGAACATTTTTGTAATACATGGTGA
ACTTTTTGTATAATACACAAAAAAAGAGAAGGAAAAAGAAAAATG-AAAAAGAAAAACAGCAAAGAAAAAGGAATCAAAA
CAAAAAAACCGAAACAAAACCACTGAAAACCAGACGAAACACTAAGAAAACCATAAGCAAATCCCTACAGAAGAAAGAAG
ATGCAACGAGAAAAGATGTCGAATCAACTGGCTCCACCGCAGGCATTGTATCGACCATTTGCTGCCCGCGGGTACCAAAT
AGGACCTGTTATCAGCGACTTCCTAGTCACTACTTCTACAAGCTCTTGGGTTCAAACAAGTTTGCTATGTTAAGACAGAG
GCCTGGAGAGACGACAACGAGTTTTCCTCACGGTGGGCCGTCGATGTATGCAGGAGGAAAAAAACTTTGACACCCCCAAA
GATTTGGATGCATTGTTTAAGTTTCTATAGGGGTGCTTTTGTGATGGTTTGGGCTACTTAATATATGACCTTTTGGCCTT
TTCTCGCAAAAAACTCATGAAACGTTCTCATTTTAGTCCACATTGCAAGCATGACACGCTGAGTCAGCTCG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS---------------S------------------S-------S---------------S---
--------------------------S-----------S-----------------------------------------
--------S--------------------------------------------------------------SSSSSS---
---S--------------------S-----SS---S-------------S----------S-------------------
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-------------------------------------------------------SS------S----------------
------------------S------------------------------------------------------S------
-------------------------SSS----------------------------------------------------
---------------------------------------------------S----------------------------
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-----S-S---------------------------SSSS----------------------------S------S-----
---------S------S-------------------------------------------S-------SSSS--------
----------------------S---------------------------------------------------------
-------------------------------------------------S------------------SSSSS-------
------S-------------------------------------------------------------------------
-------------------S---------------------------S------------S-----S------S------
-S------S------S---------------------------------S-----------S------------S-----
-------S-------------SS-----SS-S-SS--------------------------------------S------
-------------------------------S-----SS------S-------------S-----------S--------
-----------------------------S-S---S--------------------------------------------
-----SS--------------S-S----------------S-------SS-----S-S---------S-----SS-----
---------------S------------------------------S---------------------------------
-------------------------------SS------S------S------------S-------S----------S-
----------S-------S-SS-----S-SS-----------S---------S-------------------------S-
-----S-----------S----------S---------------------------------S-S------
>forward_163
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---------------------------------------------------------------TTACGGGATCAGGTGGG
GAT-----------------------------------------------------------------------------
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>reverse_1588
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-------------------------------------------------------------------CCGATCGGTGGCT
TCTTCAG-------------------------------------------------------------------------
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>forward_165
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-----------------------------------------------------------------ACGGGATCAGGTGGG
GATAA---------------------------------------------------------------------------
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>reverse_1595
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--------------------------------------------------------------------------ATCGGT
GGCTTCTTCAGGC-------------------------------------------------------------------
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>forward_701
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-----------------------------------------GCTGGGCTACTGCTTACTCC-------------------
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>reverse_2540
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-----------------------------------------------------------CAAAACTTCGACACCCCCAC-
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