Multiple sequence alignment - TraesCS2B01G049000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G049000 chr2B 100.000 2642 0 0 1 2642 24133837 24136478 0.000000e+00 4879.0
1 TraesCS2B01G049000 chr2A 86.375 2378 171 75 1 2276 15588898 15591224 0.000000e+00 2455.0
2 TraesCS2B01G049000 chr2A 78.491 265 45 11 246 505 62308375 62308118 2.100000e-36 163.0
3 TraesCS2B01G049000 chr2A 81.776 214 18 6 2274 2479 15591257 15591457 2.720000e-35 159.0
4 TraesCS2B01G049000 chr2D 88.751 1369 70 32 944 2274 13487610 13488932 0.000000e+00 1598.0
5 TraesCS2B01G049000 chr2D 82.730 359 21 7 621 957 13487249 13487588 5.570000e-72 281.0
6 TraesCS2B01G049000 chr5A 77.966 295 55 8 250 537 498180660 498180369 2.700000e-40 176.0
7 TraesCS2B01G049000 chr7A 77.381 252 48 6 275 524 201169734 201169978 9.860000e-30 141.0
8 TraesCS2B01G049000 chr7A 76.289 194 39 5 379 567 20584290 20584481 2.160000e-16 97.1
9 TraesCS2B01G049000 chr3A 76.515 264 53 8 274 533 488107028 488106770 4.590000e-28 135.0
10 TraesCS2B01G049000 chr3A 74.809 262 59 6 274 533 428612333 428612077 7.730000e-21 111.0
11 TraesCS2B01G049000 chr5B 78.333 180 35 4 259 436 292159456 292159279 2.150000e-21 113.0
12 TraesCS2B01G049000 chr4D 74.740 289 55 14 250 537 28783848 28784119 2.150000e-21 113.0
13 TraesCS2B01G049000 chr4D 100.000 29 0 0 575 603 300242398 300242370 1.000000e-03 54.7
14 TraesCS2B01G049000 chr1D 73.649 296 66 11 248 537 258414536 258414825 1.290000e-18 104.0
15 TraesCS2B01G049000 chr1D 84.211 76 8 3 386 461 256552352 256552423 1.310000e-08 71.3
16 TraesCS2B01G049000 chr7D 78.947 152 27 5 247 396 83863810 83863958 6.020000e-17 99.0
17 TraesCS2B01G049000 chr6A 75.248 202 45 5 262 461 478290856 478291054 1.010000e-14 91.6
18 TraesCS2B01G049000 chr4A 94.286 35 2 0 573 607 118633721 118633687 1.000000e-03 54.7
19 TraesCS2B01G049000 chr7B 100.000 28 0 0 574 601 378389896 378389923 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G049000 chr2B 24133837 24136478 2641 False 4879.0 4879 100.0000 1 2642 1 chr2B.!!$F1 2641
1 TraesCS2B01G049000 chr2A 15588898 15591457 2559 False 1307.0 2455 84.0755 1 2479 2 chr2A.!!$F1 2478
2 TraesCS2B01G049000 chr2D 13487249 13488932 1683 False 939.5 1598 85.7405 621 2274 2 chr2D.!!$F1 1653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
897 922 0.032813 CCTTCCCACTACTCCCCGTA 60.033 60.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2551 2755 0.037975 CCAACCACCAGCAAATCAGC 60.038 55.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.633116 ACAACGCCCTACCGCCTT 61.633 61.111 0.00 0.00 0.00 4.35
58 59 1.509004 GAGAGTCTGCGACCTGTCC 59.491 63.158 0.00 0.00 32.18 4.02
59 60 1.228583 AGAGTCTGCGACCTGTCCA 60.229 57.895 0.00 0.00 32.18 4.02
61 62 0.179124 GAGTCTGCGACCTGTCCATC 60.179 60.000 5.29 0.00 32.18 3.51
89 90 2.073056 TCAATGGATGTTGACGGTTCG 58.927 47.619 0.00 0.00 33.41 3.95
90 91 1.804151 CAATGGATGTTGACGGTTCGT 59.196 47.619 0.00 0.00 45.10 3.85
123 124 1.077501 CACATGCACCCCCGAAGAT 60.078 57.895 0.00 0.00 0.00 2.40
124 125 1.077501 ACATGCACCCCCGAAGATG 60.078 57.895 0.00 0.00 0.00 2.90
147 148 1.582968 CGTTTTCCTCCTCGACCGA 59.417 57.895 0.00 0.00 0.00 4.69
152 153 4.180946 CCTCCTCGACCGACTGCG 62.181 72.222 0.00 0.00 37.24 5.18
153 154 4.838486 CTCCTCGACCGACTGCGC 62.838 72.222 0.00 0.00 35.83 6.09
195 196 1.080772 CTGCGTCCGTGTCTTGCTA 60.081 57.895 0.00 0.00 0.00 3.49
199 200 1.080705 GTCCGTGTCTTGCTACGCT 60.081 57.895 0.00 0.00 38.87 5.07
231 233 0.726827 CGACGGCACATTAAGCACAT 59.273 50.000 0.00 0.00 0.00 3.21
253 255 4.200283 CCTCGTGGAGCGCCTCTC 62.200 72.222 8.34 0.00 41.07 3.20
254 256 3.443925 CTCGTGGAGCGCCTCTCA 61.444 66.667 8.34 0.00 43.70 3.27
284 286 2.664851 CTTCAGTGTCGGCGCCAA 60.665 61.111 28.98 4.39 0.00 4.52
303 305 2.437343 CGAAAGGACGCGTCTGCTC 61.437 63.158 35.50 25.83 39.65 4.26
408 410 2.214216 GGAAGGTTTTGGGTGGGCC 61.214 63.158 0.00 0.00 0.00 5.80
413 415 4.247130 TTTTGGGTGGGCCAGGGG 62.247 66.667 6.40 0.00 36.17 4.79
430 432 2.184579 GTAGTCAGGAGTGGGCGC 59.815 66.667 0.00 0.00 0.00 6.53
474 477 1.152963 CCCCCGCCCTCAGTTTATG 60.153 63.158 0.00 0.00 0.00 1.90
486 489 2.811431 TCAGTTTATGTCAGGTTTGCGG 59.189 45.455 0.00 0.00 0.00 5.69
487 490 2.095263 CAGTTTATGTCAGGTTTGCGGG 60.095 50.000 0.00 0.00 0.00 6.13
525 528 2.363038 CCCACCTACGGATCGATACAAA 59.637 50.000 8.69 0.00 0.00 2.83
531 534 2.264813 ACGGATCGATACAAAACCACG 58.735 47.619 8.69 0.71 0.00 4.94
537 540 2.801679 TCGATACAAAACCACGTTGGAC 59.198 45.455 10.46 0.00 40.96 4.02
538 541 2.544686 CGATACAAAACCACGTTGGACA 59.455 45.455 10.46 0.00 40.96 4.02
553 556 4.219033 GTTGGACAGCAAAATACGTTCAG 58.781 43.478 0.00 0.00 0.00 3.02
557 560 1.539388 CAGCAAAATACGTTCAGGCCA 59.461 47.619 5.01 0.00 0.00 5.36
559 562 1.268352 GCAAAATACGTTCAGGCCACA 59.732 47.619 5.01 0.00 0.00 4.17
566 569 1.586154 CGTTCAGGCCACATGGTTCC 61.586 60.000 5.01 0.00 37.57 3.62
571 574 1.984026 GGCCACATGGTTCCAAGGG 60.984 63.158 0.00 0.00 37.57 3.95
573 576 1.464722 CCACATGGTTCCAAGGGGT 59.535 57.895 7.15 0.00 34.93 4.95
587 590 1.971695 GGGGTTTTGAGGGTCAGCG 60.972 63.158 0.00 0.00 0.00 5.18
612 615 2.449031 GATGCCCTCACGTCACACCA 62.449 60.000 0.00 0.00 0.00 4.17
617 620 1.432514 CCTCACGTCACACCATTGAG 58.567 55.000 0.00 0.00 34.63 3.02
624 627 3.521524 GTCACACCATTGAGACGTTTC 57.478 47.619 0.00 0.00 34.25 2.78
643 646 5.107837 CGTTTCTAGACACAACACATGAGAC 60.108 44.000 9.60 0.00 0.00 3.36
647 650 4.077300 AGACACAACACATGAGACACAT 57.923 40.909 0.00 0.00 40.17 3.21
833 858 3.680786 TCACTCGCCACTCCACGG 61.681 66.667 0.00 0.00 0.00 4.94
841 866 4.803426 CACTCCACGGCCGAGCTC 62.803 72.222 35.90 2.73 0.00 4.09
897 922 0.032813 CCTTCCCACTACTCCCCGTA 60.033 60.000 0.00 0.00 0.00 4.02
957 1017 3.157949 TGACCACACCTCCACGCA 61.158 61.111 0.00 0.00 0.00 5.24
986 1046 3.451902 AGCAAAGAATCCTCTCCTCTCAG 59.548 47.826 0.00 0.00 0.00 3.35
987 1047 3.197549 GCAAAGAATCCTCTCCTCTCAGT 59.802 47.826 0.00 0.00 0.00 3.41
1041 1109 2.767496 CTCCCCTGCCTCCTCCTG 60.767 72.222 0.00 0.00 0.00 3.86
1263 1340 4.221422 TGCTCCGCCTACATCGGC 62.221 66.667 0.00 0.00 46.05 5.54
1273 1350 2.664835 CTACATCGGCTCCCCCTCCT 62.665 65.000 0.00 0.00 0.00 3.69
1644 1730 2.579657 CGTCCACCACCAGTAGCCA 61.580 63.158 0.00 0.00 0.00 4.75
1652 1738 1.306141 ACCAGTAGCCAGCCAGCTA 60.306 57.895 1.27 1.27 42.70 3.32
1657 1743 2.822215 TAGCCAGCCAGCTACCTAC 58.178 57.895 1.27 0.00 42.70 3.18
1658 1744 0.759436 TAGCCAGCCAGCTACCTACC 60.759 60.000 1.27 0.00 42.70 3.18
1659 1745 2.066999 GCCAGCCAGCTACCTACCT 61.067 63.158 0.00 0.00 0.00 3.08
1660 1746 0.759436 GCCAGCCAGCTACCTACCTA 60.759 60.000 0.00 0.00 0.00 3.08
1661 1747 1.041437 CCAGCCAGCTACCTACCTAC 58.959 60.000 0.00 0.00 0.00 3.18
1706 1822 3.830192 CCCTTCGCCATTGCTGCC 61.830 66.667 0.00 0.00 34.43 4.85
1737 1854 8.229811 CCACATATGTAATGTACGGATCAATTG 58.770 37.037 8.32 0.00 0.00 2.32
1796 1927 1.596709 GCATTGTTTTGTTTTGCCGGC 60.597 47.619 22.73 22.73 0.00 6.13
1799 1930 1.227002 GTTTTGTTTTGCCGGCCGA 60.227 52.632 30.73 10.22 0.00 5.54
1800 1931 1.227002 TTTTGTTTTGCCGGCCGAC 60.227 52.632 30.73 18.13 0.00 4.79
1930 2061 0.179215 CGGCAATCTTTCACGAGCAC 60.179 55.000 0.00 0.00 0.00 4.40
1933 2064 0.443869 CAATCTTTCACGAGCACGGG 59.556 55.000 8.74 3.35 45.08 5.28
1937 2068 3.454587 TTTCACGAGCACGGGCAGT 62.455 57.895 14.57 9.07 43.22 4.40
1962 2093 1.728490 GGGCACCGATCTTGATTGGC 61.728 60.000 15.00 7.56 40.86 4.52
1964 2095 2.016961 CACCGATCTTGATTGGCGG 58.983 57.895 15.00 11.03 46.83 6.13
1993 2130 3.968568 CCGGGTCACGTCACGTCA 61.969 66.667 0.00 0.00 38.32 4.35
2038 2176 5.570344 TCATCTGTAGACGAAGACGAATTC 58.430 41.667 0.00 0.00 42.66 2.17
2088 2227 2.410939 CACTCCATCGCCATCAGTATG 58.589 52.381 0.00 0.00 37.54 2.39
2125 2264 2.780014 CAGTCATTGCGAATTTGCGATC 59.220 45.455 16.42 7.75 36.84 3.69
2149 2288 2.871080 CGTTGCATTTCGCTGCCG 60.871 61.111 0.00 0.00 41.58 5.69
2201 2362 3.727258 CCGCCCCCATCTCACCAA 61.727 66.667 0.00 0.00 0.00 3.67
2202 2363 2.354729 CGCCCCCATCTCACCAAA 59.645 61.111 0.00 0.00 0.00 3.28
2203 2364 1.076777 CGCCCCCATCTCACCAAAT 60.077 57.895 0.00 0.00 0.00 2.32
2204 2365 0.684153 CGCCCCCATCTCACCAAATT 60.684 55.000 0.00 0.00 0.00 1.82
2205 2366 1.571955 GCCCCCATCTCACCAAATTT 58.428 50.000 0.00 0.00 0.00 1.82
2219 2381 3.069443 ACCAAATTTACCAGCCAACACAG 59.931 43.478 0.00 0.00 0.00 3.66
2241 2403 2.124109 TGCAGTTCGTGGCCCAAA 60.124 55.556 0.00 0.00 0.00 3.28
2243 2405 1.299850 GCAGTTCGTGGCCCAAAAC 60.300 57.895 0.00 1.22 0.00 2.43
2244 2406 2.010582 GCAGTTCGTGGCCCAAAACA 62.011 55.000 0.00 0.00 0.00 2.83
2245 2407 0.457851 CAGTTCGTGGCCCAAAACAA 59.542 50.000 0.00 0.00 0.00 2.83
2246 2408 0.744281 AGTTCGTGGCCCAAAACAAG 59.256 50.000 0.00 0.00 0.00 3.16
2247 2409 0.741915 GTTCGTGGCCCAAAACAAGA 59.258 50.000 0.00 0.00 0.00 3.02
2263 2425 7.254084 CCAAAACAAGAAAGAAAATCCGTCTTG 60.254 37.037 14.38 14.38 46.82 3.02
2267 2429 5.438761 AGAAAGAAAATCCGTCTTGGTTG 57.561 39.130 0.00 0.00 35.50 3.77
2310 2507 4.179579 GCCAAGGATCGCGGCAAC 62.180 66.667 6.13 0.00 45.52 4.17
2323 2520 2.106844 GGCAACGGTGATGGATTCC 58.893 57.895 3.55 0.00 0.00 3.01
2324 2521 0.679640 GGCAACGGTGATGGATTCCA 60.680 55.000 3.55 8.08 38.19 3.53
2326 2523 1.750778 GCAACGGTGATGGATTCCATT 59.249 47.619 19.13 3.67 45.26 3.16
2327 2524 2.223572 GCAACGGTGATGGATTCCATTC 60.224 50.000 19.13 14.45 45.26 2.67
2328 2525 3.282021 CAACGGTGATGGATTCCATTCT 58.718 45.455 19.13 0.00 45.26 2.40
2329 2526 3.199880 ACGGTGATGGATTCCATTCTC 57.800 47.619 19.13 8.58 45.26 2.87
2330 2527 2.158755 ACGGTGATGGATTCCATTCTCC 60.159 50.000 19.13 18.05 45.26 3.71
2331 2528 2.498167 GGTGATGGATTCCATTCTCCG 58.502 52.381 19.13 0.00 45.26 4.63
2332 2529 2.498167 GTGATGGATTCCATTCTCCGG 58.502 52.381 19.13 0.00 45.26 5.14
2333 2530 2.126882 TGATGGATTCCATTCTCCGGT 58.873 47.619 19.13 0.00 45.26 5.28
2339 2536 3.476552 GATTCCATTCTCCGGTGCAATA 58.523 45.455 0.00 0.00 0.00 1.90
2341 2538 3.576078 TCCATTCTCCGGTGCAATATT 57.424 42.857 0.00 0.00 0.00 1.28
2347 2544 2.434336 TCTCCGGTGCAATATTACTGCT 59.566 45.455 0.00 0.00 40.59 4.24
2348 2545 2.545526 CTCCGGTGCAATATTACTGCTG 59.454 50.000 0.00 0.00 40.59 4.41
2375 2572 0.240945 GTGAAACTGTTCCGCCATGG 59.759 55.000 7.63 7.63 40.09 3.66
2386 2583 1.293179 CGCCATGGATCGCAGGATA 59.707 57.895 18.40 0.00 31.51 2.59
2387 2584 1.016130 CGCCATGGATCGCAGGATAC 61.016 60.000 18.40 0.00 33.77 2.24
2420 2624 2.226330 TGCTTATTCGTGGTTGCAACT 58.774 42.857 27.64 10.54 0.00 3.16
2421 2625 2.621055 TGCTTATTCGTGGTTGCAACTT 59.379 40.909 27.64 9.56 0.00 2.66
2422 2626 2.979813 GCTTATTCGTGGTTGCAACTTG 59.020 45.455 27.64 17.49 0.00 3.16
2423 2627 2.697431 TATTCGTGGTTGCAACTTGC 57.303 45.000 27.64 16.62 45.29 4.01
2440 2644 3.006323 ACTTGCAACCTGAACAACACAAA 59.994 39.130 0.00 0.00 0.00 2.83
2441 2645 3.883830 TGCAACCTGAACAACACAAAT 57.116 38.095 0.00 0.00 0.00 2.32
2448 2652 4.328712 ACCTGAACAACACAAATTTTTCGC 59.671 37.500 0.00 0.00 0.00 4.70
2468 2672 1.538276 CGCTTTTATTCGGCTTGCTG 58.462 50.000 0.00 0.00 0.00 4.41
2474 2678 4.621068 TTTATTCGGCTTGCTGATTCTG 57.379 40.909 4.87 0.00 0.00 3.02
2479 2683 0.449388 GGCTTGCTGATTCTGGTTCG 59.551 55.000 0.00 0.00 0.00 3.95
2480 2684 1.160137 GCTTGCTGATTCTGGTTCGT 58.840 50.000 0.00 0.00 0.00 3.85
2481 2685 1.129437 GCTTGCTGATTCTGGTTCGTC 59.871 52.381 0.00 0.00 0.00 4.20
2482 2686 1.391485 CTTGCTGATTCTGGTTCGTCG 59.609 52.381 0.00 0.00 0.00 5.12
2483 2687 0.317160 TGCTGATTCTGGTTCGTCGT 59.683 50.000 0.00 0.00 0.00 4.34
2484 2688 0.992802 GCTGATTCTGGTTCGTCGTC 59.007 55.000 0.00 0.00 0.00 4.20
2485 2689 1.630148 CTGATTCTGGTTCGTCGTCC 58.370 55.000 0.00 0.00 0.00 4.79
2486 2690 0.963225 TGATTCTGGTTCGTCGTCCA 59.037 50.000 10.35 10.35 0.00 4.02
2489 2693 2.432628 CTGGTTCGTCGTCCAGGC 60.433 66.667 22.08 0.00 45.11 4.85
2490 2694 3.934391 CTGGTTCGTCGTCCAGGCC 62.934 68.421 22.08 0.00 45.11 5.19
2496 2700 4.452733 GTCGTCCAGGCCGGGAAG 62.453 72.222 27.41 27.46 39.05 3.46
2517 2721 3.801997 CCAGGCCCCAGCGATCTT 61.802 66.667 0.00 0.00 41.24 2.40
2518 2722 2.273449 CAGGCCCCAGCGATCTTT 59.727 61.111 0.00 0.00 41.24 2.52
2519 2723 1.821332 CAGGCCCCAGCGATCTTTC 60.821 63.158 0.00 0.00 41.24 2.62
2559 2763 4.481112 GGCACCGGCGCTGATTTG 62.481 66.667 20.25 12.73 42.47 2.32
2561 2765 3.434319 CACCGGCGCTGATTTGCT 61.434 61.111 20.25 0.00 0.00 3.91
2562 2766 3.434319 ACCGGCGCTGATTTGCTG 61.434 61.111 20.25 0.58 37.22 4.41
2564 2768 3.434319 CGGCGCTGATTTGCTGGT 61.434 61.111 11.90 0.00 33.80 4.00
2565 2769 2.180017 GGCGCTGATTTGCTGGTG 59.820 61.111 7.64 0.00 0.00 4.17
2566 2770 2.180017 GCGCTGATTTGCTGGTGG 59.820 61.111 0.00 0.00 0.00 4.61
2567 2771 2.629656 GCGCTGATTTGCTGGTGGT 61.630 57.895 0.00 0.00 0.00 4.16
2568 2772 1.959085 CGCTGATTTGCTGGTGGTT 59.041 52.632 0.00 0.00 0.00 3.67
2569 2773 0.387622 CGCTGATTTGCTGGTGGTTG 60.388 55.000 0.00 0.00 0.00 3.77
2570 2774 0.037975 GCTGATTTGCTGGTGGTTGG 60.038 55.000 0.00 0.00 0.00 3.77
2571 2775 0.037975 CTGATTTGCTGGTGGTTGGC 60.038 55.000 0.00 0.00 0.00 4.52
2572 2776 0.469705 TGATTTGCTGGTGGTTGGCT 60.470 50.000 0.00 0.00 0.00 4.75
2573 2777 0.037975 GATTTGCTGGTGGTTGGCTG 60.038 55.000 0.00 0.00 0.00 4.85
2574 2778 2.103339 ATTTGCTGGTGGTTGGCTGC 62.103 55.000 0.00 0.00 0.00 5.25
2575 2779 3.736996 TTGCTGGTGGTTGGCTGCT 62.737 57.895 0.00 0.00 0.00 4.24
2576 2780 3.677648 GCTGGTGGTTGGCTGCTG 61.678 66.667 0.00 0.00 0.00 4.41
2577 2781 3.677648 CTGGTGGTTGGCTGCTGC 61.678 66.667 7.10 7.10 38.76 5.25
2588 2792 4.045771 CTGCTGCCATTGCGTGCA 62.046 61.111 8.52 8.52 43.78 4.57
2589 2793 3.561217 CTGCTGCCATTGCGTGCAA 62.561 57.895 10.02 10.02 44.73 4.08
2590 2794 2.807895 GCTGCCATTGCGTGCAAG 60.808 61.111 13.25 0.00 41.78 4.01
2591 2795 2.646719 CTGCCATTGCGTGCAAGT 59.353 55.556 13.25 0.00 41.78 3.16
2592 2796 1.443194 CTGCCATTGCGTGCAAGTC 60.443 57.895 13.25 5.23 41.78 3.01
2593 2797 2.502510 GCCATTGCGTGCAAGTCG 60.503 61.111 13.25 4.25 39.47 4.18
2594 2798 2.965147 GCCATTGCGTGCAAGTCGA 61.965 57.895 13.25 0.00 39.47 4.20
2595 2799 1.796151 CCATTGCGTGCAAGTCGAT 59.204 52.632 13.25 0.00 39.47 3.59
2596 2800 0.247814 CCATTGCGTGCAAGTCGATC 60.248 55.000 13.25 0.00 39.47 3.69
2597 2801 0.247814 CATTGCGTGCAAGTCGATCC 60.248 55.000 13.25 0.00 39.47 3.36
2598 2802 1.695893 ATTGCGTGCAAGTCGATCCG 61.696 55.000 13.25 0.00 39.47 4.18
2599 2803 2.809601 GCGTGCAAGTCGATCCGT 60.810 61.111 0.59 0.00 0.00 4.69
2600 2804 1.515519 GCGTGCAAGTCGATCCGTA 60.516 57.895 0.59 0.00 0.00 4.02
2601 2805 1.472276 GCGTGCAAGTCGATCCGTAG 61.472 60.000 0.59 0.00 0.00 3.51
2602 2806 0.179171 CGTGCAAGTCGATCCGTAGT 60.179 55.000 0.00 0.00 0.00 2.73
2603 2807 1.546834 GTGCAAGTCGATCCGTAGTC 58.453 55.000 0.00 0.00 0.00 2.59
2604 2808 0.098200 TGCAAGTCGATCCGTAGTCG 59.902 55.000 0.00 0.00 40.30 4.18
2605 2809 0.376152 GCAAGTCGATCCGTAGTCGA 59.624 55.000 0.00 0.70 44.93 4.20
2623 2827 2.331805 CGGATACCGGTGAGCTCG 59.668 66.667 19.93 10.15 44.15 5.03
2624 2828 2.478890 CGGATACCGGTGAGCTCGT 61.479 63.158 19.93 3.10 44.15 4.18
2625 2829 1.359475 GGATACCGGTGAGCTCGTC 59.641 63.158 19.93 4.68 0.00 4.20
2626 2830 1.009900 GATACCGGTGAGCTCGTCG 60.010 63.158 19.93 17.93 0.00 5.12
2627 2831 1.434622 GATACCGGTGAGCTCGTCGA 61.435 60.000 19.93 10.17 0.00 4.20
2628 2832 1.712977 ATACCGGTGAGCTCGTCGAC 61.713 60.000 19.93 5.18 0.00 4.20
2629 2833 3.733960 CCGGTGAGCTCGTCGACA 61.734 66.667 23.98 1.87 0.00 4.35
2630 2834 2.485582 CGGTGAGCTCGTCGACAT 59.514 61.111 19.51 0.00 0.00 3.06
2631 2835 1.869574 CGGTGAGCTCGTCGACATG 60.870 63.158 19.51 8.37 0.00 3.21
2632 2836 1.517257 GGTGAGCTCGTCGACATGG 60.517 63.158 17.16 5.73 0.00 3.66
2633 2837 2.161486 GTGAGCTCGTCGACATGGC 61.161 63.158 17.16 15.29 0.00 4.40
2634 2838 2.583593 GAGCTCGTCGACATGGCC 60.584 66.667 17.16 0.00 0.00 5.36
2635 2839 4.498520 AGCTCGTCGACATGGCCG 62.499 66.667 17.16 0.00 0.00 6.13
2636 2840 4.492160 GCTCGTCGACATGGCCGA 62.492 66.667 17.16 4.82 0.00 5.54
2640 2844 2.879462 GTCGACATGGCCGACGTC 60.879 66.667 21.23 5.18 45.23 4.34
2641 2845 3.366915 TCGACATGGCCGACGTCA 61.367 61.111 17.16 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.207089 CGAGGTTGAGTAGGGCATGAA 59.793 52.381 0.00 0.00 0.00 2.57
52 53 0.176449 TGACATCAGCGATGGACAGG 59.824 55.000 18.34 0.00 43.60 4.00
58 59 2.876550 ACATCCATTGACATCAGCGATG 59.123 45.455 14.34 14.34 44.71 3.84
59 60 3.204306 ACATCCATTGACATCAGCGAT 57.796 42.857 0.00 0.00 0.00 4.58
61 62 2.679336 TCAACATCCATTGACATCAGCG 59.321 45.455 0.00 0.00 33.62 5.18
195 196 2.358003 GCAACTCAGAGCCAGCGT 60.358 61.111 0.00 0.00 0.00 5.07
199 200 2.049156 CGTCGCAACTCAGAGCCA 60.049 61.111 0.00 0.00 0.00 4.75
219 221 2.113860 AGGACGCATGTGCTTAATGT 57.886 45.000 6.08 0.00 45.45 2.71
268 270 2.970324 GTTGGCGCCGACACTGAA 60.970 61.111 36.88 15.34 0.00 3.02
275 277 4.302509 TCCTTTCGTTGGCGCCGA 62.303 61.111 23.90 19.26 38.14 5.54
278 280 4.736631 GCGTCCTTTCGTTGGCGC 62.737 66.667 0.00 0.00 40.53 6.53
284 286 2.733593 GCAGACGCGTCCTTTCGT 60.734 61.111 34.08 13.29 42.09 3.85
326 328 3.391665 ATGCCACTGTAGAGCGGCC 62.392 63.158 15.71 0.00 44.22 6.13
354 356 0.681887 TTCCCGTCCGACATCAGCTA 60.682 55.000 0.00 0.00 0.00 3.32
360 362 3.014085 ATGCGTTCCCGTCCGACAT 62.014 57.895 0.00 0.00 36.15 3.06
361 363 3.687102 ATGCGTTCCCGTCCGACA 61.687 61.111 0.00 0.00 36.15 4.35
377 379 4.880537 CTTCCTCCTCGCGCGCAT 62.881 66.667 32.61 0.00 0.00 4.73
382 384 1.298859 CCAAAACCTTCCTCCTCGCG 61.299 60.000 0.00 0.00 0.00 5.87
393 395 2.201210 CTGGCCCACCCAAAACCT 59.799 61.111 0.00 0.00 44.81 3.50
408 410 0.978146 CCCACTCCTGACTACCCCTG 60.978 65.000 0.00 0.00 0.00 4.45
413 415 2.184579 GCGCCCACTCCTGACTAC 59.815 66.667 0.00 0.00 0.00 2.73
459 461 1.656652 CTGACATAAACTGAGGGCGG 58.343 55.000 0.00 0.00 0.00 6.13
465 467 2.811431 CCGCAAACCTGACATAAACTGA 59.189 45.455 0.00 0.00 0.00 3.41
468 470 2.156098 TCCCGCAAACCTGACATAAAC 58.844 47.619 0.00 0.00 0.00 2.01
474 477 1.868109 GCTTTTTCCCGCAAACCTGAC 60.868 52.381 0.00 0.00 0.00 3.51
486 489 3.045492 TCCGGACGCGCTTTTTCC 61.045 61.111 5.73 3.91 0.00 3.13
487 490 2.172659 GTCCGGACGCGCTTTTTC 59.827 61.111 20.85 0.00 0.00 2.29
510 513 3.119531 ACGTGGTTTTGTATCGATCCGTA 60.120 43.478 0.00 0.00 0.00 4.02
525 528 1.178276 TTTTGCTGTCCAACGTGGTT 58.822 45.000 0.00 0.00 39.03 3.67
531 534 4.217754 TGAACGTATTTTGCTGTCCAAC 57.782 40.909 0.00 0.00 31.97 3.77
537 540 1.539388 TGGCCTGAACGTATTTTGCTG 59.461 47.619 3.32 0.00 0.00 4.41
538 541 1.539827 GTGGCCTGAACGTATTTTGCT 59.460 47.619 3.32 0.00 0.00 3.91
553 556 1.984026 CCCTTGGAACCATGTGGCC 60.984 63.158 0.00 0.00 39.32 5.36
557 560 2.046292 CAAAACCCCTTGGAACCATGT 58.954 47.619 0.00 0.00 34.81 3.21
559 562 2.608623 CTCAAAACCCCTTGGAACCAT 58.391 47.619 0.00 0.00 34.81 3.55
566 569 1.620822 CTGACCCTCAAAACCCCTTG 58.379 55.000 0.00 0.00 0.00 3.61
571 574 0.310854 CAACGCTGACCCTCAAAACC 59.689 55.000 0.00 0.00 0.00 3.27
573 576 0.181587 TCCAACGCTGACCCTCAAAA 59.818 50.000 0.00 0.00 0.00 2.44
587 590 0.741221 GACGTGAGGGCATCTCCAAC 60.741 60.000 0.00 0.00 41.76 3.77
612 615 5.462398 GTGTTGTGTCTAGAAACGTCTCAAT 59.538 40.000 8.55 0.00 35.12 2.57
617 620 4.743151 TCATGTGTTGTGTCTAGAAACGTC 59.257 41.667 8.55 4.73 0.00 4.34
624 627 4.620982 TGTGTCTCATGTGTTGTGTCTAG 58.379 43.478 0.00 0.00 0.00 2.43
643 646 9.131416 TGTACTACGTACACTCAAAATAATGTG 57.869 33.333 2.93 0.00 42.99 3.21
685 688 7.030768 GCTTCTTCTTACGATGATATACTCCC 58.969 42.308 0.00 0.00 0.00 4.30
897 922 2.509336 CGCCGGCGAATCAAGTCT 60.509 61.111 44.86 0.00 42.83 3.24
957 1017 3.817647 GAGAGGATTCTTTGCTTGTGTGT 59.182 43.478 0.00 0.00 32.53 3.72
1263 1340 2.612251 GAGGAGGAGGAGGGGGAG 59.388 72.222 0.00 0.00 0.00 4.30
1264 1341 3.036959 GGAGGAGGAGGAGGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
1265 1342 3.039526 AGGAGGAGGAGGAGGGGG 61.040 72.222 0.00 0.00 0.00 5.40
1266 1343 2.612251 GAGGAGGAGGAGGAGGGG 59.388 72.222 0.00 0.00 0.00 4.79
1267 1344 0.703056 TAGGAGGAGGAGGAGGAGGG 60.703 65.000 0.00 0.00 0.00 4.30
1268 1345 0.481128 GTAGGAGGAGGAGGAGGAGG 59.519 65.000 0.00 0.00 0.00 4.30
1273 1350 2.192443 CGCGTAGGAGGAGGAGGA 59.808 66.667 0.00 0.00 0.00 3.71
1644 1730 0.935194 AGGTAGGTAGGTAGCTGGCT 59.065 55.000 4.27 0.00 35.39 4.75
1652 1738 2.123982 CCGGCGAGGTAGGTAGGT 60.124 66.667 9.30 0.00 34.51 3.08
1653 1739 3.603671 GCCGGCGAGGTAGGTAGG 61.604 72.222 12.58 0.00 43.70 3.18
1654 1740 2.518825 AGCCGGCGAGGTAGGTAG 60.519 66.667 23.20 0.00 43.70 3.18
1655 1741 2.517875 GAGCCGGCGAGGTAGGTA 60.518 66.667 23.20 0.00 43.70 3.08
1706 1822 1.225855 ACATTACATATGTGGCGGCG 58.774 50.000 18.81 0.51 0.00 6.46
1713 1829 7.661437 AGCAATTGATCCGTACATTACATATGT 59.339 33.333 13.93 13.93 36.13 2.29
1737 1854 3.019933 TGAAATTGTTTTACCGGCAGC 57.980 42.857 0.00 0.00 0.00 5.25
1800 1931 5.514204 ACTTCCTTAATTATTCACGTCGACG 59.486 40.000 34.58 34.58 46.33 5.12
1802 1933 6.183360 GCAACTTCCTTAATTATTCACGTCGA 60.183 38.462 0.00 0.00 0.00 4.20
1813 1944 3.057806 CGAAACCGGCAACTTCCTTAATT 60.058 43.478 0.00 0.00 0.00 1.40
1819 1950 1.572941 GACGAAACCGGCAACTTCC 59.427 57.895 0.00 0.00 34.60 3.46
2009 2146 4.508492 GTCTTCGTCTACAGATGAGATCGA 59.492 45.833 1.66 0.00 40.73 3.59
2010 2147 4.607336 CGTCTTCGTCTACAGATGAGATCG 60.607 50.000 1.66 4.73 40.73 3.69
2011 2148 4.508492 TCGTCTTCGTCTACAGATGAGATC 59.492 45.833 1.66 0.00 40.73 2.75
2012 2149 4.443621 TCGTCTTCGTCTACAGATGAGAT 58.556 43.478 1.66 0.00 40.73 2.75
2013 2150 3.858247 TCGTCTTCGTCTACAGATGAGA 58.142 45.455 1.66 0.51 40.73 3.27
2014 2151 4.601621 TTCGTCTTCGTCTACAGATGAG 57.398 45.455 1.66 0.00 40.73 2.90
2064 2203 1.592669 GATGGCGATGGAGTGGACG 60.593 63.158 0.00 0.00 0.00 4.79
2088 2227 1.515519 CTGCCAACATCATGTGCGC 60.516 57.895 0.00 0.00 0.00 6.09
2195 2356 3.068873 GTGTTGGCTGGTAAATTTGGTGA 59.931 43.478 0.00 0.00 0.00 4.02
2197 2358 3.034635 TGTGTTGGCTGGTAAATTTGGT 58.965 40.909 0.00 0.00 0.00 3.67
2198 2359 3.652274 CTGTGTTGGCTGGTAAATTTGG 58.348 45.455 0.00 0.00 0.00 3.28
2199 2360 3.059166 GCTGTGTTGGCTGGTAAATTTG 58.941 45.455 0.00 0.00 0.00 2.32
2201 2362 1.269448 CGCTGTGTTGGCTGGTAAATT 59.731 47.619 0.00 0.00 0.00 1.82
2202 2363 0.881118 CGCTGTGTTGGCTGGTAAAT 59.119 50.000 0.00 0.00 0.00 1.40
2203 2364 0.179043 TCGCTGTGTTGGCTGGTAAA 60.179 50.000 0.00 0.00 0.00 2.01
2204 2365 0.882927 GTCGCTGTGTTGGCTGGTAA 60.883 55.000 0.00 0.00 0.00 2.85
2205 2366 1.301401 GTCGCTGTGTTGGCTGGTA 60.301 57.895 0.00 0.00 0.00 3.25
2219 2381 4.077188 GCCACGAACTGCAGTCGC 62.077 66.667 27.32 19.28 39.24 5.19
2241 2403 5.359860 ACCAAGACGGATTTTCTTTCTTGTT 59.640 36.000 8.41 0.00 40.99 2.83
2243 2405 5.438761 ACCAAGACGGATTTTCTTTCTTG 57.561 39.130 0.00 0.00 41.84 3.02
2244 2406 5.592688 TCAACCAAGACGGATTTTCTTTCTT 59.407 36.000 0.00 0.00 38.63 2.52
2245 2407 5.130350 TCAACCAAGACGGATTTTCTTTCT 58.870 37.500 0.00 0.00 38.63 2.52
2246 2408 5.008712 ACTCAACCAAGACGGATTTTCTTTC 59.991 40.000 0.00 0.00 38.63 2.62
2247 2409 4.887655 ACTCAACCAAGACGGATTTTCTTT 59.112 37.500 0.00 0.00 38.63 2.52
2263 2425 1.597742 TTCAGCTTGCTGACTCAACC 58.402 50.000 22.92 0.00 32.47 3.77
2267 2429 4.201891 CCATGTTATTCAGCTTGCTGACTC 60.202 45.833 22.92 14.00 32.47 3.36
2310 2507 2.498167 GGAGAATGGAATCCATCACCG 58.502 52.381 16.08 0.00 44.40 4.94
2321 2518 3.576078 AATATTGCACCGGAGAATGGA 57.424 42.857 9.46 0.00 0.00 3.41
2323 2520 4.319766 GCAGTAATATTGCACCGGAGAATG 60.320 45.833 9.46 0.00 41.17 2.67
2324 2521 3.815401 GCAGTAATATTGCACCGGAGAAT 59.185 43.478 9.46 5.49 41.17 2.40
2325 2522 3.118408 AGCAGTAATATTGCACCGGAGAA 60.118 43.478 9.46 0.00 43.92 2.87
2326 2523 2.434336 AGCAGTAATATTGCACCGGAGA 59.566 45.455 9.46 0.00 43.92 3.71
2327 2524 2.545526 CAGCAGTAATATTGCACCGGAG 59.454 50.000 9.46 0.00 43.92 4.63
2328 2525 2.560504 CAGCAGTAATATTGCACCGGA 58.439 47.619 9.46 0.00 43.92 5.14
2329 2526 1.002468 GCAGCAGTAATATTGCACCGG 60.002 52.381 10.32 0.00 43.92 5.28
2330 2527 1.942657 AGCAGCAGTAATATTGCACCG 59.057 47.619 10.32 0.00 43.92 4.94
2331 2528 2.542411 GCAGCAGCAGTAATATTGCACC 60.542 50.000 10.32 0.79 43.92 5.01
2332 2529 2.724349 GCAGCAGCAGTAATATTGCAC 58.276 47.619 10.32 2.11 43.92 4.57
2347 2544 2.159254 GGAACAGTTTCACTTTGCAGCA 60.159 45.455 0.00 0.00 32.80 4.41
2348 2545 2.463876 GGAACAGTTTCACTTTGCAGC 58.536 47.619 0.00 0.00 32.80 5.25
2405 2609 3.568093 GCAAGTTGCAACCACGAAT 57.432 47.368 25.62 3.24 44.26 3.34
2420 2624 3.667497 TTTGTGTTGTTCAGGTTGCAA 57.333 38.095 0.00 0.00 0.00 4.08
2421 2625 3.883830 ATTTGTGTTGTTCAGGTTGCA 57.116 38.095 0.00 0.00 0.00 4.08
2422 2626 5.544136 AAAATTTGTGTTGTTCAGGTTGC 57.456 34.783 0.00 0.00 0.00 4.17
2423 2627 6.239945 CGAAAAATTTGTGTTGTTCAGGTTG 58.760 36.000 0.00 0.00 0.00 3.77
2424 2628 5.163903 GCGAAAAATTTGTGTTGTTCAGGTT 60.164 36.000 0.00 0.00 0.00 3.50
2425 2629 4.328712 GCGAAAAATTTGTGTTGTTCAGGT 59.671 37.500 0.00 0.00 0.00 4.00
2426 2630 4.260172 GGCGAAAAATTTGTGTTGTTCAGG 60.260 41.667 0.00 0.00 0.00 3.86
2440 2644 3.175929 CCGAATAAAAGCGGCGAAAAAT 58.824 40.909 12.98 0.00 41.17 1.82
2441 2645 2.586900 CCGAATAAAAGCGGCGAAAAA 58.413 42.857 12.98 0.00 41.17 1.94
2468 2672 3.806591 TGGACGACGAACCAGAATC 57.193 52.632 0.00 0.00 0.00 2.52
2479 2683 4.452733 CTTCCCGGCCTGGACGAC 62.453 72.222 26.47 0.00 42.00 4.34
2500 2704 3.350031 AAAGATCGCTGGGGCCTGG 62.350 63.158 0.84 0.00 34.44 4.45
2501 2705 1.821332 GAAAGATCGCTGGGGCCTG 60.821 63.158 0.84 0.00 34.44 4.85
2502 2706 2.592308 GAAAGATCGCTGGGGCCT 59.408 61.111 0.84 0.00 34.44 5.19
2503 2707 2.897350 CGAAAGATCGCTGGGGCC 60.897 66.667 0.00 0.00 42.96 5.80
2542 2746 4.481112 CAAATCAGCGCCGGTGCC 62.481 66.667 35.27 18.14 34.65 5.01
2544 2748 3.434319 AGCAAATCAGCGCCGGTG 61.434 61.111 11.67 11.67 40.15 4.94
2545 2749 3.434319 CAGCAAATCAGCGCCGGT 61.434 61.111 2.29 0.00 40.15 5.28
2546 2750 4.183686 CCAGCAAATCAGCGCCGG 62.184 66.667 2.29 0.00 40.15 6.13
2547 2751 3.434319 ACCAGCAAATCAGCGCCG 61.434 61.111 2.29 0.00 40.15 6.46
2548 2752 2.180017 CACCAGCAAATCAGCGCC 59.820 61.111 2.29 0.00 40.15 6.53
2549 2753 2.146073 AACCACCAGCAAATCAGCGC 62.146 55.000 0.00 0.00 40.15 5.92
2550 2754 0.387622 CAACCACCAGCAAATCAGCG 60.388 55.000 0.00 0.00 40.15 5.18
2551 2755 0.037975 CCAACCACCAGCAAATCAGC 60.038 55.000 0.00 0.00 0.00 4.26
2552 2756 0.037975 GCCAACCACCAGCAAATCAG 60.038 55.000 0.00 0.00 0.00 2.90
2553 2757 0.469705 AGCCAACCACCAGCAAATCA 60.470 50.000 0.00 0.00 0.00 2.57
2554 2758 0.037975 CAGCCAACCACCAGCAAATC 60.038 55.000 0.00 0.00 0.00 2.17
2555 2759 2.051941 CAGCCAACCACCAGCAAAT 58.948 52.632 0.00 0.00 0.00 2.32
2556 2760 2.795110 GCAGCCAACCACCAGCAAA 61.795 57.895 0.00 0.00 0.00 3.68
2557 2761 3.225798 GCAGCCAACCACCAGCAA 61.226 61.111 0.00 0.00 0.00 3.91
2558 2762 4.208403 AGCAGCCAACCACCAGCA 62.208 61.111 0.00 0.00 0.00 4.41
2559 2763 3.677648 CAGCAGCCAACCACCAGC 61.678 66.667 0.00 0.00 0.00 4.85
2560 2764 3.677648 GCAGCAGCCAACCACCAG 61.678 66.667 0.00 0.00 33.58 4.00
2571 2775 3.561217 TTGCACGCAATGGCAGCAG 62.561 57.895 8.95 0.00 46.77 4.24
2572 2776 3.561217 CTTGCACGCAATGGCAGCA 62.561 57.895 4.68 5.15 45.35 4.41
2573 2777 2.807895 CTTGCACGCAATGGCAGC 60.808 61.111 4.68 0.00 41.68 5.25
2574 2778 1.443194 GACTTGCACGCAATGGCAG 60.443 57.895 4.68 0.00 41.68 4.85
2575 2779 2.644418 GACTTGCACGCAATGGCA 59.356 55.556 4.68 0.00 41.24 4.92
2576 2780 2.257286 ATCGACTTGCACGCAATGGC 62.257 55.000 4.68 1.33 35.20 4.40
2577 2781 0.247814 GATCGACTTGCACGCAATGG 60.248 55.000 4.68 0.00 35.20 3.16
2578 2782 0.247814 GGATCGACTTGCACGCAATG 60.248 55.000 4.68 2.68 35.20 2.82
2579 2783 1.695893 CGGATCGACTTGCACGCAAT 61.696 55.000 4.68 0.00 35.20 3.56
2580 2784 2.379634 CGGATCGACTTGCACGCAA 61.380 57.895 4.12 4.12 0.00 4.85
2581 2785 2.202703 TACGGATCGACTTGCACGCA 62.203 55.000 0.00 0.00 0.00 5.24
2582 2786 1.472276 CTACGGATCGACTTGCACGC 61.472 60.000 0.00 0.00 0.00 5.34
2583 2787 0.179171 ACTACGGATCGACTTGCACG 60.179 55.000 0.00 0.00 0.00 5.34
2584 2788 1.546834 GACTACGGATCGACTTGCAC 58.453 55.000 0.00 0.00 0.00 4.57
2585 2789 0.098200 CGACTACGGATCGACTTGCA 59.902 55.000 0.00 0.00 42.25 4.08
2586 2790 0.376152 TCGACTACGGATCGACTTGC 59.624 55.000 4.11 0.00 43.38 4.01
2598 2802 0.305922 CACCGGTATCCGTCGACTAC 59.694 60.000 6.87 9.31 46.80 2.73
2599 2803 0.177836 TCACCGGTATCCGTCGACTA 59.822 55.000 6.87 1.58 46.80 2.59
2600 2804 1.078214 TCACCGGTATCCGTCGACT 60.078 57.895 6.87 0.00 46.80 4.18
2601 2805 1.354506 CTCACCGGTATCCGTCGAC 59.645 63.158 6.87 5.18 46.80 4.20
2602 2806 2.475466 GCTCACCGGTATCCGTCGA 61.475 63.158 6.87 0.00 46.80 4.20
2603 2807 2.025727 GCTCACCGGTATCCGTCG 59.974 66.667 6.87 0.00 46.80 5.12
2604 2808 1.359475 GAGCTCACCGGTATCCGTC 59.641 63.158 6.87 0.00 46.80 4.79
2605 2809 2.478890 CGAGCTCACCGGTATCCGT 61.479 63.158 15.40 0.00 46.80 4.69
2607 2811 1.359475 GACGAGCTCACCGGTATCC 59.641 63.158 15.40 0.00 0.00 2.59
2608 2812 1.009900 CGACGAGCTCACCGGTATC 60.010 63.158 15.40 2.18 0.00 2.24
2609 2813 1.450848 TCGACGAGCTCACCGGTAT 60.451 57.895 20.11 0.00 0.00 2.73
2610 2814 2.046988 TCGACGAGCTCACCGGTA 60.047 61.111 20.11 0.00 0.00 4.02
2611 2815 3.735029 GTCGACGAGCTCACCGGT 61.735 66.667 20.11 0.00 0.00 5.28
2612 2816 3.052620 ATGTCGACGAGCTCACCGG 62.053 63.158 20.11 0.00 0.00 5.28
2613 2817 1.869574 CATGTCGACGAGCTCACCG 60.870 63.158 15.40 15.73 0.00 4.94
2614 2818 1.517257 CCATGTCGACGAGCTCACC 60.517 63.158 15.40 3.29 0.00 4.02
2615 2819 2.161486 GCCATGTCGACGAGCTCAC 61.161 63.158 15.40 4.66 0.00 3.51
2616 2820 2.181777 GCCATGTCGACGAGCTCA 59.818 61.111 15.40 0.00 0.00 4.26
2617 2821 2.583593 GGCCATGTCGACGAGCTC 60.584 66.667 19.50 2.73 0.00 4.09
2618 2822 4.498520 CGGCCATGTCGACGAGCT 62.499 66.667 19.50 0.00 29.41 4.09
2619 2823 4.492160 TCGGCCATGTCGACGAGC 62.492 66.667 11.62 12.99 33.73 5.03
2624 2828 3.366915 TGACGTCGGCCATGTCGA 61.367 61.111 11.62 4.58 43.29 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.