>input_sequence_73079
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---------------------------ATGAGCCGGCGCCACCTCGTCCTCCTCCCCTGCCTCCTCCTGCTCCTGGCCGG
CGCCG---------CGTCGGCGTCGAGTCCCCCGAAGGCGAGCCGGGCGGAGGCGGAGGGCTACGTGCGGCGGTGCTGCC
GGGCCACGAGCTACCCGCGCGCGTGCGAGCGGAGCCTGGTGCCGCGCGCGCCGGCCGTGGGGCTCAGCCCGCGCCGGCTG
GCGCAGGCGGCGCTCGCGGCCGCCGCCGACGCCGCGCGCAACTGCTCCGCCTACATCGGCTCCCCCTCCT---CCTCCTC
CTCCTACGCGTCGTCCAAGGGGAAGGGGAAG---GGCGGCGCCATGGGGGACTGCGCGGAGACGGTGCGCGACGCGGCGG
ACCTGCTGAAGCAGTCGGCCGCGGAGCTGGGCGGGCGGGTGGGGCGCGCCTCGTCCCCGCGCTTCGCGTGGTGCCTCAGC
AACGTGCAGACCTGGGCCAGCGCCGCGCTCACCGACGCCGAGACCTGCCTCGACTCCCTCGCCACCTACGCCGGCGCCGG
CGCGCCCCGGGAGGACGTGAGGCGCCGCGTCGTCGCCGTCGAGCAGGCCGCCGGCATCGCCCTCGCCCTCGTCAACCGCC
TCCAGCCCGCGCGCCGCCCCGCCGCCGCCGTCCA---CCACCAGTAG---------------------------------
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>chr2B_1_TraesCS2B01G049000
ACACAACGCCCTACCGCCTTTCATGCCCTACTCAACCTCGGAGAGTCTGCGACCTGTCCATCGCTGATGTCAATGGATGT
TGACGGTTCGTTACTGCCCACCGGCCACATGCACCCCCGAAGATGGCGGCGTTTTCCTCCTCGACCGACTGCGCTGCCTG
CGCGTGTGCGGCTACGGCTGCGTCCGTGTCTTGCTACGCTGGCTCTGAGTTGCGA-CGGCACATTAAGCACATGCGTCCT
CGTGGAGCGCCTCTCAGCCGGTGCGCCGCTTCAGTGTCGGCGCCAACGAAAGGACGCGTCTGCTCTGGGCCAGCGCCATT
GCAGAGCGGCCGCTCTACAGTGGCATGAATGCGGGTAGCTGATGTCGGACGGGAACGCATGCGCGCGAGGAGGAAGGTTT
TGGGTGGGCCAGGGGTAGTCAGGAGTGGGCGCGGTAGTGGTCCGGACGCCCGCAAAGCCCCCGCCCTCAG-TTTATGTCA
GGTTTGCGGGAAAAAGCGCGTCCGGACCCACCTACGGATCGATACAAAACCACGTTGGACAGCAAAATACGTTCAGGCCA
CATGGTTCCAAGGGGTTTTGAGGGTCAGCGTTGGAGATGCCCTCACGTCACACCATTGAGACGTTTCTAGACACAACACA
TGAGACACATTATTTTGAGTGTACGTAGTACATACTACAAATTTATAGGGAGTATATCATCGTAAGAAGAAGCCGGGCAC
GACGCCCGACTTTGCCTAACATTTTCCTTTTCCAAAGAAAGACCGGAG----------------------AAGAAGAAGG
CGTGACGACCGCTGAATGTGCAAGGCCACGGCTGGTCTGGTCACTCGCCACTCCACGGCCGAGCTCCTCTGCCTAACAAA
TCTTATATATTCCCTCTTCTGCCCTTCCCACTACTCCCCGTAGACTTGATTCGCCGGCGCCGACGAGCAACCCCGACTTG
ACTCTGAC-CACACC----------------------------------TCCACGCACACACAAGCAAAGAATCCTCTCC
TCTCAGT------GG--CAAAGCCAAGATGAGCCGGCGCCACCTCGTCCTCCTCCCCTGCCTCCTCCTGCTCCTGGCCGG
CGCCG---------CGTCGGCGTCGAGTCCCCCGAAGGCGAGCCGGGCGGAGGCGGAGGGCTACGTGCGGCGGTGCTGCC
GGGCCACGAGCTACCCGCGCGCGTGCGAGCGGAGCCTGGTGCCGCGCGCGCCGGCCGTGGGGCTCAGCCCGCGCCGGCTG
GCGCAGGCGGCGCTCGCGGCCGCCGCCGACGCCGCGCGCAACTGCTCCGCCTACATCGGCTCCCCCTCCT---CCTCCTC
CTCCTACGCGTCGTCCAAGGGGAAGGGGAAG---GGCGGCGCCATGGGGGACTGCGCGGAGACGGTGCGCGACGCGGCGG
ACCTGCTGAAGCAGTCGGCCGCGGAGCTGGGCGGGCGGGTGGGGCGCGCCTCGTCCCCGCGCTTCGCGTGGTGCCTCAGC
AACGTGCAGACCTGGGCCAGCGCCGCGCTCACCGACGCCGAGACCTGCCTCGACTCCCTCGCCACCTACGCCGGCGCCGG
CGCGCCCCGGGAGGACGTGAGGCGCCGCGTCGTCGCCGTCGAGCAGGCCGCCGGCATCGCCCTCGCCCTCGTCAACCGCC
TCCAGCCCGCGCGCCGCCCCGCCGCCGCCGTCCA---CCACCAGTAGCCAGCCAGCTACCTACCTACCTCGCCGGCTCCC
TCATCCATTC------------------------------ATTCCCCTTCGCCATTGCTGCCGCCGCCACATATGTAATG
TACGGATCA-ATTGCTGCCGGTAAAACAATTTCATCAC--------------CATCATCGTTGATCGCATTGTTTTGTTT
TGCCGGCCGACGTCGACGTGAATAATTAAGGAAGTTGCCGGTTTCGTCGGCGCCTGGATCCACCGTACGCACCGCCTTCA
TTGCGATCGCTAATTCTGTCTCGTCCATGACGGGACAGAGCCGGCAATCTTTCACGAGCACGGGCAGTGGGTGGGGCACC
GATCTTGATTGGCGGTTTGGCGGTGGC------CGGGTCACGTCACGTCACGGCGTCGAGGTCGATCGATCTC-ATCTGT
AGACGAAGACGAATTCGGTGAAC-TCGCCGACATGGCGTGTGCGTCCACTCCATCGCCATCAGTATGCGCACATGATGTT
GGCAGTCATTGCGAATTTGCGATCGGTCCCCGTTGCATTTCGCTGCCGCCTCCCTCCCA-----------GGGCAATTGA
TGGCAT-----------GGCATGGCCGCCCCCATCTCACCAAATTT-ACCAGCCAACACAGCGACTGCAGTTCGTGGCCC
AAAACAAGAAAGAAAATCCGTCTTGGTTGAGTCAGCA-----------------------------------AGCTGAAT
AACATGGGCGCCAAGGATCGCGGCAACGGTGATGGATTCCATTCTCCGGTGCAATATTACTGCTGCTGCAAAGTGAAACT
GTTCCGCCATGGATCGCAGGATACT-------TTTTTCCTTGTTGCTTATTCGTGGTTGCAACTTGCAACCTGAACAACA
CAAATTTTTCGCCGCTTTTATTCGGCTTGCTGATTCTGGTTCGTCGTCCAGGCCGGGAAGGCCCCAGGCCCCAGCGATCT
TTCGCGAGCGATGGCCGGGAGGTGGGGCACCGGCGCTGATTTGCTGGTGGTTGGCTGCTGCCATTGCGTGCAAGTCGATC
CGTAGTCGACGGATACCGGTGAGCTCGTCGACATGGCCGACGTCA
>chr2A_1
ACACAATGCCCTACCGCCTCTCATGCCCTACTCAACCTCGGAGAGTCTGCGAACTGTCTGTGGCTGATGTCAATGGATGT
TGACGGTCCACTACTGCCCACCGGCCACATGCGCCCCCGAAGACAGCGGCGTTTTCCTCCTCGACCGTCTGCTTTGCCCG
CGTGTGTGC------GGCTGCGTCCGCGTCTTGCTGCGCCGGCTCTGAGTTGCGAGCGGCGCATTAAGCACACGCGTCCT
CGTGGAGCGCCTCTAGGCCGGTGCGCCGC-TCAGTGCCGACGCCAGCGAAAGGACGCGTCTGCTTTGGGCCAGCGTCATT
GCAGAGCAGCCGCTCGACGGTGGCATGAATGCGGGCAGCTGGCGTCAGACGGGAACGCTCGCGGGCGAGGAGGAGGGTTT
TGGGTGGGCAAGGG-TAGTCAGGAGTGGGCGAGGTAGTGGTCCGGACGCCCGCAAAGCCCTCGCCCCCACTTTTATCTCA
GGTTTGCGAAAAAAAGCGCGTCCGGACCCATCCACGGATCGATACAAGACCACATTGGATGGCAAAATACGTTCATGCCG
CGTGGTTCGAAGGAGATTTGAGGGTCAGCATTGGAGATGCCCTCACGTCACACCGTTGAAACATTTTTAGACACAACACA
TGAGATACAATATTTTGAGTGTACGTAGTAGATACTACAAATTTATACGGAGTATATCATCATAAGAAGAAGCCGGGCAC
GACGCCCGACTTTGCCTAACATTTTCCTTTTCCAAGGAAAGACCGGAGAAGAAGAAGCCGTGGCGAGTAAAAGAAGAAGG
TGTGACGACCGCTGAATCTGCAACGCCACGGCTGGTCTGGTCACTCGCAACTCCACGTCCGAGCTGCTCTGCCTAACAAA
TCTTATATATTCCCTCTTCTGCCCTTCCCACTACTCCCCGTCGACTTGATTCGCCGGCGCCGACGACGAG-CCCGATTCG
ACTCCGACGCACACCACCACGCTGA-----------CACAACTCCACAGTCCACGCGCACACAAGCAAAGAATCCTTTCC
TCTCCTCCCAGCGACAACAAAGCCAAGATGAGCGGGCGCCACCTCGTCCTCCTCCCCTGCCTCCTCCTCCTCCTGGCCGC
CGCCGGCAGCGTTGCGTCGGCGTCGAGCCCCCCGAAGGTGAGCCCGGCGGAGGCGACGGGCTTCGTGCGCCGGTGCTGCC
GGGCCACGAGCTACCCGCGCGCGTGCGAGCGGAGCCTGGTCCCGCGCGCGCCCGCGGTGGGCCTCAGCCCGCGCCGGCTC
GCGCAGGCCGCGCTCGCCGCCGCCGCCGACGCCGCGCGCAACTGCTCCGCCTACATCGG------CTCCC---CCTCCTC
CTCCTACGCGTCGTCCAAGGGGAAGGG------------CGCGATGGGGGACTGCGCCGAGATGGTGCGCGACGCGGCGG
ACCTGCTGAGGCAGTCGGCGGCGGAGCTGGGCGGGCGGGTGGGGCGCGCCTCGTCGCCGCGCTTCGCGTGGTGCCTCAGC
AACGTGCAGACCTGGGCCAGCGCCGCGCTCACGGACGCCGAGACCTGCCTCGACTCCCTCGCCACCTACGCCGGCGCCGG
CGCGCCCCGGGAGGACGTGAGGCGCCGCGTCGTCGCCGTCGAGCAGGCCGCCGGCATCGCCCTCGCCCTCGTCAACCGCC
TCCAGCCCGCGCGCCGCACCGCCACCGCCAGCGCCAGCCACCAGTAGCCGCTGCTGCTATCT------------------
--ATCCATTCCCCGTCGCCGTTGTAGCTACTACATATTCTATTCCCCTTCGCCATTGCTGCGGCCTCTGCCAGACATGTG
TACGGATTACATTACTGCTAGTGAAACAATTTCACCAT--------------CACCATCACCATCGTCTACATGATTTTG
GCTTGGACGTGGATCACA-------------AAGTTGTCGGTTTCGTCGGCGCCTGGATCCACCGTACGCACCGCCTTCA
TTGCGATCGCTAATTCTGTCTCGTCCATGACGAGACAGGGCCGGCAATCTTTCACGAGCAGGGACAGGCGGTGGGGCACC
GATCTTGATGGGTGTTTTGGCGGTGGCGGTGGTCGGGTCACGTCACGTCGCGGCGTCGAGGTCGAGGTCGATCGATCTGT
AGACGAAGACGAATTGGGTGAACCTCGTCGACATGGCGTGTGTGTCCACTCCATCGCCATCAGTATACGCACATGATGTT
GGCAGTCATTGCGAATTTGCGATTGGTCCCCGTTGCATTTCGCTGCCACCTCCCTCCCACTCCCAGGGCAGGGCAATTGA
TG------------------ATGGCCGCCCCCATCACCAAATTAACCACCAGCCAACACAACGACTGCAGTTCGTGGCCC
AAGAT----AAGAAAATCCGTCTTCGTTCAGTCAGCAGTCCACCATCGGCTTCGACTCTGTACGTAGCGGCAAGCTGAAT
AACATCGGCGCCAAGGATCGCGGCAAGGGTGATGGATCCTCCAGC-----GCAATGTGACTGCCACTGCAAAGTGAAACT
GTTCCGCTAGGAGGGATGAGATCTCATCATACTTTTTCCTTGTTGCTTGTTCGTGGTTGCAAC-------CTGAACAACA
CAACATTTTCGGCGCTTTTATTCGGCTTGCTAATTCTTGTTC--------------------------------------
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>chr2D_621
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--------------------------------------------------------------GTTTGTAGATACAACACA
TGAGATACAATATATTGAGTCTACATAGTAT---CTACAAATTTATCCTCATCACCTCCCAGTAAGAAGAAGCCGGGC--
-ACGCCCGACTTTGCCTAACATTTTCCTTTTCCAAAGAAAGACCAGAGAAGAAGAAGCCGCGGCGAGTAAAAGAAGAAGG
CGTGACGACCGCTGAATGTGCAAGGCCACGGCTGGTCTGGTCACTCGCCACTCCACG-------------GCCTAACAAA
TCTTATATATTCGCTCTTCTGCCCTTCCCACTACTCCCCGTCGACTTGATTCGCCGGCGCCGACGAGCAACCCCGACTTG
ACTCTGAC-CACACCACCACGCCAACACCTTTCCCTCACAACTCCACAGTCCACGCGCACACAAGCAAAGAATCCTCTCC
TAACACCGGCACCGG--CAAAGCCAAGATGAGCCGGCGCCACCTCGTCCTCCTCCCCTGCCTCCTCCTCCTCCTGGCCGC
CG------GCGTCGCGTCGGCGTCGAGCCCCCCGAAGGTGAGCCCGGCGGAGGCGACGGGCTTCGTGCGCCGGTGCTGCC
GGGCCACGAGCTACCCGCGCGCGTGCGAGCGGAGCCTGGTGCCGCGCGCGCCCGCGGTGGGCCTCAGCCCGCGGCGGCTC
GCGCAGGCGGCGCTCGCGGCCGCCGCCGACGCCGCGCGCAACTGCTCCGCCTACATCGG------GTCCCCCTCCTCCTC
CTCCTACGCGTCGTCCAAGGGGAAGGGGAAGGGCGGCGGCGCCATGGGGGACTGCGCCGAGACGGTGCGCGACGCGGCGG
ACCTGCTGAAGCAGTCGGTGGCGGAGCTGGGCGGGCGGGTGGGGCGCGCCTCGTCCCCGCGCTTCGCGTGGTGCCTCAGC
AACGTGCAGACCTGGGCCAGCGCCGCGCTCACCGACGCCGAGACCTGCCTCGACTCCCTCGCCGCCTCCGCCGGCGCCGG
CGCGCCCCGGGAGGACGTGAGGCGCCGCGTCGTCGCCGTCGAGCAGGCCGCCGGCGTCGCCCTCGCGCTCGTCAACCGCC
TCCAGCCAGCGCGCCGCCCCGCCGCCGCCGTCCA---CCA---GTAGCCGGCCAGCTCG--------CTCGCCGGCTCCC
TCATCCATTCCCCTTCGCCGGCA---------------------------------GCCGCTGCCGCCGCATATGTAATG
TACGGATCA-ATTACTGCCGGTAAAACGATTTCGTCACCATCATCATCGATTCATCATCGTTGATCGCATTGTTTTGTTT
TGCCGC-------CGACGTGAATGATTAACGAAGTTGCCGGTTTCGTCGGCGCCTGGATCCACCGTACGCACCGCCTTCA
TTGCGATCGCTAATTCTGTCTCGTCCATGACGGGACAGAGCCGGCAATCTTTCACGAGCATGGACAGGGGGTGGGGCACC
GGTCTTGA--------TTGGCGGTGGCGGTGGTCGGGTCACGTCACGTCGCGGCGT------CGAGATCGATCGATCTGT
AGACGAAGACGAATTGGGTGAA-CTCGCCGACATGGCGTGTGTGTCCACTCCATCGCCATCAGCAGACGCACATGATGTT
GGTAGTCATTGCGATTGC-CGATTGGTCCCCGTTGCATTTCGCTCCCAGGG------CA-----------GGGCGATTGA
TGGATCCAGCACGCATGGGCATGGCCGCCCCCATCACCAAATTAACCA---GCCAACACAATGACAGCAGTTCGTGGTCC
AAGAT----AAGAAAATCCGTCTTCGTTCAGTCAG---------------------------------------------
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>SNPs
------S------------S--------------------------------S-----SS-S------------------
-------S-SS---------------------S----------SS----------------------S----SS----S-
--S------SSSSSS-----------S--------S---S--------------------S-----------S-------
--------------SS-------------S------S--S-----S------------------S----------S----
-------S-------S--S----------------S-----SS---S-----------SS---S----------S-----
---------S----S----------------S----------------------------S-----S--S------S---
--------SS--------------------S-S--------------S-----S-----SS--------------S---S
-S------S----S-S-------------S------------------------S----S------S-------------
-----S---S--------------------S----------------S--------------------------------
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---------------------------------------------------------S-------S--------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------S-----------------------
-----SS-------------------------------------------------------------S----------S
---------------------------S----------S-----S----------SS-----S------S----------
----------------------------------------------------S--S-----S-----------------S
-----------------------------------------------------------SSSSSS----S----------
---------------------------------------------------------S----------------------
-------------------S------------------------------------------------------------
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-------------------------------------------------S-------SSSSSSSSSS-------------
-------------------------------------------------------------S------S-----------
-------------S------------------------------------------------------------------
------S--SS-S----------S-----S--------------------------------------------------
------------------------------------------------------------S--S---S------------
---------S--S-S----------------------------------S---------------SSSSSS---------
---------------S--------------------------S-----------------------S-------------
-----------------------S-----------------------S--------------------------------
---SSS-----------------------------S-SSS-SSSSS--------------S-------------------
--S-SSSSS---------------S---S---------------------------------------------------
-----S--------------------S----------S-SSSSSSSSSSS-----S-S-----SS---------------
-------S-S-SSSSSSSS---SSS-----------------------S--------------SSSSSSS----------
---SS------S-------------------S-----S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_922
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----------------------CCTTCCCACTACTCCCCGTA--------------------------------------
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>reverse_2755
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----------------------------------GCTGATTTGCTGGTGGTTGG--------------------------
---------------------------------------------
