Multiple sequence alignment - TraesCS2B01G028000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G028000 chr2B 100.000 2609 0 0 1 2609 13167479 13164871 0.000000e+00 4819.0
1 TraesCS2B01G028000 chr2B 94.190 1962 45 22 675 2609 13238910 13236991 0.000000e+00 2928.0
2 TraesCS2B01G028000 chr2B 78.115 626 98 27 993 1609 151628154 151627559 6.860000e-96 361.0
3 TraesCS2B01G028000 chr2B 78.154 531 95 16 1082 1610 150948504 150947993 4.190000e-83 318.0
4 TraesCS2B01G028000 chr2B 85.437 206 22 5 2356 2554 610601342 610601546 9.460000e-50 207.0
5 TraesCS2B01G028000 chr6B 94.179 670 37 1 5 674 620186951 620186284 0.000000e+00 1020.0
6 TraesCS2B01G028000 chr6B 93.047 676 44 2 1 676 714465964 714466636 0.000000e+00 985.0
7 TraesCS2B01G028000 chr6B 92.614 677 46 3 2 677 378383114 378383787 0.000000e+00 970.0
8 TraesCS2B01G028000 chr6B 80.354 509 61 25 2077 2554 308517797 308517297 1.490000e-92 350.0
9 TraesCS2B01G028000 chr6B 81.792 346 53 7 2217 2554 32088523 32088866 5.500000e-72 281.0
10 TraesCS2B01G028000 chrUn 92.962 682 46 2 6 686 49582443 49583123 0.000000e+00 992.0
11 TraesCS2B01G028000 chrUn 92.996 671 44 3 6 675 15533356 15532688 0.000000e+00 976.0
12 TraesCS2B01G028000 chrUn 92.996 671 44 3 6 675 213001927 213001259 0.000000e+00 976.0
13 TraesCS2B01G028000 chr5B 93.452 672 39 4 1 672 36889791 36890457 0.000000e+00 992.0
14 TraesCS2B01G028000 chr4B 92.836 684 47 2 1 683 206527802 206528484 0.000000e+00 990.0
15 TraesCS2B01G028000 chr3B 93.323 674 40 3 1 672 684642179 684642849 0.000000e+00 990.0
16 TraesCS2B01G028000 chr3B 80.906 508 61 22 2077 2554 693647650 693648151 4.100000e-98 368.0
17 TraesCS2B01G028000 chr3B 78.474 511 69 27 2072 2554 141706879 141706382 1.960000e-76 296.0
18 TraesCS2B01G028000 chr2A 83.522 619 89 8 996 1609 19913925 19914535 1.360000e-157 566.0
19 TraesCS2B01G028000 chr2A 80.097 618 106 16 997 1609 98603420 98604025 6.630000e-121 444.0
20 TraesCS2B01G028000 chr2A 78.422 621 108 13 993 1609 99159800 99159202 5.270000e-102 381.0
21 TraesCS2B01G028000 chr2D 81.784 527 86 8 1086 1610 99683453 99683971 1.430000e-117 433.0
22 TraesCS2B01G028000 chr2D 80.943 530 91 8 1080 1607 99703701 99704222 6.720000e-111 411.0
23 TraesCS2B01G028000 chr2D 81.925 509 52 20 2077 2554 637374030 637373531 6.770000e-106 394.0
24 TraesCS2B01G028000 chr2D 78.768 617 100 17 998 1609 99737329 99736739 4.070000e-103 385.0
25 TraesCS2B01G028000 chr2D 77.323 635 109 15 982 1610 99723344 99723949 2.490000e-90 342.0
26 TraesCS2B01G028000 chr7B 79.608 510 63 17 2077 2554 13804946 13804446 6.960000e-86 327.0
27 TraesCS2B01G028000 chr6A 79.151 518 67 24 2069 2554 54007267 54007775 1.160000e-83 320.0
28 TraesCS2B01G028000 chr3D 80.363 331 36 17 2252 2554 519601721 519602050 9.400000e-55 224.0
29 TraesCS2B01G028000 chr7D 86.957 92 11 1 2463 2554 109790062 109789972 4.590000e-18 102.0
30 TraesCS2B01G028000 chr1B 100.000 33 0 0 2523 2555 345305516 345305484 7.800000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G028000 chr2B 13164871 13167479 2608 True 4819 4819 100.000 1 2609 1 chr2B.!!$R1 2608
1 TraesCS2B01G028000 chr2B 13236991 13238910 1919 True 2928 2928 94.190 675 2609 1 chr2B.!!$R2 1934
2 TraesCS2B01G028000 chr2B 151627559 151628154 595 True 361 361 78.115 993 1609 1 chr2B.!!$R4 616
3 TraesCS2B01G028000 chr2B 150947993 150948504 511 True 318 318 78.154 1082 1610 1 chr2B.!!$R3 528
4 TraesCS2B01G028000 chr6B 620186284 620186951 667 True 1020 1020 94.179 5 674 1 chr6B.!!$R2 669
5 TraesCS2B01G028000 chr6B 714465964 714466636 672 False 985 985 93.047 1 676 1 chr6B.!!$F3 675
6 TraesCS2B01G028000 chr6B 378383114 378383787 673 False 970 970 92.614 2 677 1 chr6B.!!$F2 675
7 TraesCS2B01G028000 chr6B 308517297 308517797 500 True 350 350 80.354 2077 2554 1 chr6B.!!$R1 477
8 TraesCS2B01G028000 chrUn 49582443 49583123 680 False 992 992 92.962 6 686 1 chrUn.!!$F1 680
9 TraesCS2B01G028000 chrUn 15532688 15533356 668 True 976 976 92.996 6 675 1 chrUn.!!$R1 669
10 TraesCS2B01G028000 chrUn 213001259 213001927 668 True 976 976 92.996 6 675 1 chrUn.!!$R2 669
11 TraesCS2B01G028000 chr5B 36889791 36890457 666 False 992 992 93.452 1 672 1 chr5B.!!$F1 671
12 TraesCS2B01G028000 chr4B 206527802 206528484 682 False 990 990 92.836 1 683 1 chr4B.!!$F1 682
13 TraesCS2B01G028000 chr3B 684642179 684642849 670 False 990 990 93.323 1 672 1 chr3B.!!$F1 671
14 TraesCS2B01G028000 chr3B 693647650 693648151 501 False 368 368 80.906 2077 2554 1 chr3B.!!$F2 477
15 TraesCS2B01G028000 chr2A 19913925 19914535 610 False 566 566 83.522 996 1609 1 chr2A.!!$F1 613
16 TraesCS2B01G028000 chr2A 98603420 98604025 605 False 444 444 80.097 997 1609 1 chr2A.!!$F2 612
17 TraesCS2B01G028000 chr2A 99159202 99159800 598 True 381 381 78.422 993 1609 1 chr2A.!!$R1 616
18 TraesCS2B01G028000 chr2D 99683453 99683971 518 False 433 433 81.784 1086 1610 1 chr2D.!!$F1 524
19 TraesCS2B01G028000 chr2D 99703701 99704222 521 False 411 411 80.943 1080 1607 1 chr2D.!!$F2 527
20 TraesCS2B01G028000 chr2D 99736739 99737329 590 True 385 385 78.768 998 1609 1 chr2D.!!$R1 611
21 TraesCS2B01G028000 chr2D 99723344 99723949 605 False 342 342 77.323 982 1610 1 chr2D.!!$F3 628
22 TraesCS2B01G028000 chr7B 13804446 13804946 500 True 327 327 79.608 2077 2554 1 chr7B.!!$R1 477
23 TraesCS2B01G028000 chr6A 54007267 54007775 508 False 320 320 79.151 2069 2554 1 chr6A.!!$F1 485

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
870 888 0.539986 TACGATTCTCAAGGCACCCC 59.46 55.0 0.0 0.0 0.0 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2505 2604 0.106894 GGATTCCATCCGTGAGACCC 59.893 60.0 0.0 0.0 40.13 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 124 4.018490 TGTCTATTGCACATGAATTGCCT 58.982 39.130 0.00 0.00 39.39 4.75
225 229 9.557061 AAACGGAGAATTAAGAAACTAGACTTT 57.443 29.630 0.00 0.00 0.00 2.66
246 250 7.151976 ACTTTCCATGCACCATAAACTAAAAC 58.848 34.615 0.00 0.00 0.00 2.43
254 258 5.410067 CACCATAAACTAAAACTGCCATGG 58.590 41.667 7.63 7.63 38.11 3.66
345 349 6.372381 GCCATCATCAAAAACTAAAATTGCCT 59.628 34.615 0.00 0.00 0.00 4.75
431 435 2.328319 ACATCATGGCAACTTTTGGGT 58.672 42.857 0.00 0.00 37.61 4.51
433 437 3.900601 ACATCATGGCAACTTTTGGGTAA 59.099 39.130 0.00 0.00 37.61 2.85
617 624 5.423886 TCATACGTGGCAAAATGAGTGATA 58.576 37.500 0.00 0.00 0.00 2.15
657 664 0.819666 TGCAAACGCCCACACATGTA 60.820 50.000 0.00 0.00 0.00 2.29
704 712 4.724399 TGGGAAGATACTTTGCTTGTCAA 58.276 39.130 0.00 0.00 0.00 3.18
770 788 3.961480 TCTGGTAAGCCGATGATATGG 57.039 47.619 0.00 0.00 37.67 2.74
778 796 2.749280 CCGATGATATGGCTACAGCA 57.251 50.000 3.24 0.00 44.36 4.41
779 797 2.614779 CCGATGATATGGCTACAGCAG 58.385 52.381 3.24 0.00 44.36 4.24
780 798 2.232208 CCGATGATATGGCTACAGCAGA 59.768 50.000 3.24 0.00 44.36 4.26
781 799 3.509740 CGATGATATGGCTACAGCAGAG 58.490 50.000 3.24 0.00 44.36 3.35
782 800 3.675502 CGATGATATGGCTACAGCAGAGG 60.676 52.174 3.24 0.00 44.36 3.69
783 801 1.345741 TGATATGGCTACAGCAGAGGC 59.654 52.381 3.24 0.00 44.36 4.70
785 803 2.665000 TGGCTACAGCAGAGGCAC 59.335 61.111 3.24 0.00 43.87 5.01
786 804 2.124942 GGCTACAGCAGAGGCACC 60.125 66.667 3.24 0.00 44.61 5.01
787 805 2.510238 GCTACAGCAGAGGCACCG 60.510 66.667 0.00 0.00 44.61 4.94
811 829 2.619177 CAGTATCTAGCTACCACGCACT 59.381 50.000 0.10 0.00 0.00 4.40
870 888 0.539986 TACGATTCTCAAGGCACCCC 59.460 55.000 0.00 0.00 0.00 4.95
882 900 1.594310 GCACCCCACTCTCTGTCTC 59.406 63.158 0.00 0.00 0.00 3.36
1149 1186 2.235016 GAGATGACGCTCTACCTCCAT 58.765 52.381 0.00 0.00 32.16 3.41
1476 1539 0.034767 TGTACGAGGTCACGAGGGAT 60.035 55.000 0.00 0.00 37.03 3.85
1566 1629 3.257624 CCTACGAGGGAACAGTGTACTTT 59.742 47.826 0.00 0.00 0.00 2.66
1610 1673 4.452795 GCTCTACGAGTGCTACATCTGATA 59.547 45.833 0.00 0.00 32.42 2.15
1611 1674 5.049336 GCTCTACGAGTGCTACATCTGATAA 60.049 44.000 0.00 0.00 32.42 1.75
1612 1675 6.301687 TCTACGAGTGCTACATCTGATAAC 57.698 41.667 0.00 0.00 0.00 1.89
1613 1676 6.056236 TCTACGAGTGCTACATCTGATAACT 58.944 40.000 0.00 0.00 0.00 2.24
1614 1677 5.584253 ACGAGTGCTACATCTGATAACTT 57.416 39.130 0.00 0.00 0.00 2.66
1615 1678 6.694877 ACGAGTGCTACATCTGATAACTTA 57.305 37.500 0.00 0.00 0.00 2.24
1616 1679 6.496571 ACGAGTGCTACATCTGATAACTTAC 58.503 40.000 0.00 0.00 0.00 2.34
1617 1680 6.319152 ACGAGTGCTACATCTGATAACTTACT 59.681 38.462 0.00 0.00 0.00 2.24
1618 1681 6.634837 CGAGTGCTACATCTGATAACTTACTG 59.365 42.308 0.00 0.00 0.00 2.74
1619 1682 6.276847 AGTGCTACATCTGATAACTTACTGC 58.723 40.000 0.00 0.00 0.00 4.40
1620 1683 6.097554 AGTGCTACATCTGATAACTTACTGCT 59.902 38.462 0.00 0.00 0.00 4.24
1621 1684 7.285629 AGTGCTACATCTGATAACTTACTGCTA 59.714 37.037 0.00 0.00 0.00 3.49
1622 1685 7.380065 GTGCTACATCTGATAACTTACTGCTAC 59.620 40.741 0.00 0.00 0.00 3.58
1623 1686 7.285629 TGCTACATCTGATAACTTACTGCTACT 59.714 37.037 0.00 0.00 0.00 2.57
1624 1687 8.138712 GCTACATCTGATAACTTACTGCTACTT 58.861 37.037 0.00 0.00 0.00 2.24
1625 1688 9.672086 CTACATCTGATAACTTACTGCTACTTC 57.328 37.037 0.00 0.00 0.00 3.01
1626 1689 8.299990 ACATCTGATAACTTACTGCTACTTCT 57.700 34.615 0.00 0.00 0.00 2.85
1627 1690 8.194104 ACATCTGATAACTTACTGCTACTTCTG 58.806 37.037 0.00 0.00 0.00 3.02
1628 1691 7.704578 TCTGATAACTTACTGCTACTTCTGT 57.295 36.000 0.00 0.00 0.00 3.41
1629 1692 8.123639 TCTGATAACTTACTGCTACTTCTGTT 57.876 34.615 0.00 0.00 0.00 3.16
1647 1710 7.927092 ACTTCTGTTAACTTACTCCTCAAGTTC 59.073 37.037 7.22 0.00 43.40 3.01
1660 1723 2.880268 CTCAAGTTCACATTGAGCCACA 59.120 45.455 3.02 0.00 45.07 4.17
1661 1724 3.286353 TCAAGTTCACATTGAGCCACAA 58.714 40.909 0.00 0.00 42.95 3.33
1707 1773 2.668550 AAAGCACGGGCCTTCGTC 60.669 61.111 5.73 0.00 41.86 4.20
1794 1862 2.618709 GCTTCTATGTGTGCCCATAACC 59.381 50.000 0.00 0.00 0.00 2.85
2044 2112 8.674263 ATCTCTTCCAGAATCAAATCATGTAC 57.326 34.615 0.00 0.00 33.62 2.90
2135 2205 0.455815 CATCCCCCGTTTTTAGCTGC 59.544 55.000 0.00 0.00 0.00 5.25
2240 2310 3.664551 TCTTCCTTCTCCACTCGGATA 57.335 47.619 0.00 0.00 41.79 2.59
2326 2397 3.823330 GTGTCTCCGGTCGGCGAT 61.823 66.667 14.79 0.00 31.18 4.58
2340 2411 2.100031 GCGATGTGCCGTGTGATGA 61.100 57.895 0.00 0.00 37.76 2.92
2458 2557 4.344865 TTGGTTCTCTGGGGGCGC 62.345 66.667 0.00 0.00 0.00 6.53
2583 2682 1.809619 CGGTGCTGTGTATGGTCCG 60.810 63.158 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 86 5.914898 ATAGACATGGCAACTTTTAACCC 57.085 39.130 0.00 0.00 37.61 4.11
120 124 8.147058 ACATGGCAATTTTAGTGTAAACATCAA 58.853 29.630 0.00 0.00 0.00 2.57
198 202 8.760103 AGTCTAGTTTCTTAATTCTCCGTTTC 57.240 34.615 0.00 0.00 0.00 2.78
225 229 5.336372 GCAGTTTTAGTTTATGGTGCATGGA 60.336 40.000 0.00 0.00 0.00 3.41
246 250 1.466856 AAGTGCATGTACCATGGCAG 58.533 50.000 13.04 0.00 36.86 4.85
345 349 7.946207 TGTGGCACTTTTAATTTGTAGATCAA 58.054 30.769 19.83 0.00 0.00 2.57
382 386 3.891977 TGTAGTTGCCATGGTGCTTAAAA 59.108 39.130 14.67 0.00 0.00 1.52
440 445 7.254624 CCCATGTTGATATGTTTCGACGAATTA 60.255 37.037 11.71 3.97 33.42 1.40
503 509 9.594478 AAAGTGAATTAAAAATCCGTTTTCACT 57.406 25.926 9.03 9.03 39.98 3.41
589 596 2.697431 TTTTGCCACGTATGAACAGC 57.303 45.000 0.00 0.00 0.00 4.40
657 664 2.684374 ACAAACGGAAAAACTAACGCCT 59.316 40.909 0.00 0.00 0.00 5.52
704 712 0.675522 CGACCGGGTGTTTGCCTATT 60.676 55.000 3.30 0.00 0.00 1.73
770 788 1.945354 TACGGTGCCTCTGCTGTAGC 61.945 60.000 0.00 0.00 42.50 3.58
772 790 0.896479 TGTACGGTGCCTCTGCTGTA 60.896 55.000 0.00 0.00 38.71 2.74
773 791 2.159819 CTGTACGGTGCCTCTGCTGT 62.160 60.000 0.00 0.00 38.71 4.40
774 792 1.446792 CTGTACGGTGCCTCTGCTG 60.447 63.158 0.00 0.00 38.71 4.41
775 793 0.611062 TACTGTACGGTGCCTCTGCT 60.611 55.000 17.87 0.00 38.71 4.24
776 794 0.460311 ATACTGTACGGTGCCTCTGC 59.540 55.000 17.87 0.00 38.26 4.26
777 795 2.025155 AGATACTGTACGGTGCCTCTG 58.975 52.381 17.87 0.00 0.00 3.35
778 796 2.438800 AGATACTGTACGGTGCCTCT 57.561 50.000 17.87 12.86 0.00 3.69
779 797 2.030981 GCTAGATACTGTACGGTGCCTC 60.031 54.545 17.87 10.93 0.00 4.70
780 798 1.955080 GCTAGATACTGTACGGTGCCT 59.045 52.381 17.87 15.07 0.00 4.75
781 799 1.955080 AGCTAGATACTGTACGGTGCC 59.045 52.381 17.87 8.68 0.00 5.01
782 800 3.058363 GGTAGCTAGATACTGTACGGTGC 60.058 52.174 17.87 11.44 0.00 5.01
783 801 4.024218 GTGGTAGCTAGATACTGTACGGTG 60.024 50.000 17.87 1.07 0.00 4.94
784 802 4.133078 GTGGTAGCTAGATACTGTACGGT 58.867 47.826 17.18 12.92 0.00 4.83
785 803 3.186001 CGTGGTAGCTAGATACTGTACGG 59.814 52.174 22.85 0.00 30.95 4.02
786 804 3.363772 GCGTGGTAGCTAGATACTGTACG 60.364 52.174 24.61 24.61 34.16 3.67
787 805 3.562973 TGCGTGGTAGCTAGATACTGTAC 59.437 47.826 17.18 12.55 38.13 2.90
837 855 5.163519 TGAGAATCGTAGCACATCAATCAGA 60.164 40.000 0.00 0.00 38.61 3.27
870 888 2.279741 CCGAGAGAGAGACAGAGAGTG 58.720 57.143 0.00 0.00 0.00 3.51
882 900 4.141287 CCATATATAGGGAGCCGAGAGAG 58.859 52.174 7.72 0.00 0.00 3.20
1149 1186 3.973305 TGGCACCATTATAGAGGATGTCA 59.027 43.478 0.02 0.77 0.00 3.58
1446 1509 1.807226 CTCGTACATGAGGTCCGCA 59.193 57.895 0.00 0.00 32.18 5.69
1476 1539 2.782222 GCCGCCGACCACAGAGATA 61.782 63.158 0.00 0.00 0.00 1.98
1566 1629 1.144716 GATGTCCATCTGCAGCCGA 59.855 57.895 9.47 0.56 35.04 5.54
1610 1673 9.473640 GTAAGTTAACAGAAGTAGCAGTAAGTT 57.526 33.333 8.61 0.00 0.00 2.66
1611 1674 8.858094 AGTAAGTTAACAGAAGTAGCAGTAAGT 58.142 33.333 8.61 0.00 0.00 2.24
1612 1675 9.344309 GAGTAAGTTAACAGAAGTAGCAGTAAG 57.656 37.037 8.61 0.00 0.00 2.34
1613 1676 8.302438 GGAGTAAGTTAACAGAAGTAGCAGTAA 58.698 37.037 8.61 0.00 0.00 2.24
1614 1677 7.668886 AGGAGTAAGTTAACAGAAGTAGCAGTA 59.331 37.037 8.61 0.00 0.00 2.74
1615 1678 6.494146 AGGAGTAAGTTAACAGAAGTAGCAGT 59.506 38.462 8.61 0.00 0.00 4.40
1616 1679 6.926313 AGGAGTAAGTTAACAGAAGTAGCAG 58.074 40.000 8.61 0.00 0.00 4.24
1617 1680 6.492429 TGAGGAGTAAGTTAACAGAAGTAGCA 59.508 38.462 8.61 0.00 0.00 3.49
1618 1681 6.921914 TGAGGAGTAAGTTAACAGAAGTAGC 58.078 40.000 8.61 0.00 0.00 3.58
1619 1682 8.578151 ACTTGAGGAGTAAGTTAACAGAAGTAG 58.422 37.037 8.61 0.00 36.65 2.57
1620 1683 8.474710 ACTTGAGGAGTAAGTTAACAGAAGTA 57.525 34.615 8.61 0.00 36.65 2.24
1621 1684 7.362802 ACTTGAGGAGTAAGTTAACAGAAGT 57.637 36.000 8.61 0.00 36.65 3.01
1622 1685 7.926555 TGAACTTGAGGAGTAAGTTAACAGAAG 59.073 37.037 8.61 0.00 45.52 2.85
1623 1686 7.709613 GTGAACTTGAGGAGTAAGTTAACAGAA 59.290 37.037 8.61 0.00 45.52 3.02
1624 1687 7.147794 TGTGAACTTGAGGAGTAAGTTAACAGA 60.148 37.037 13.92 2.38 46.77 3.41
1625 1688 6.984474 TGTGAACTTGAGGAGTAAGTTAACAG 59.016 38.462 13.92 0.00 46.77 3.16
1627 1690 7.964604 ATGTGAACTTGAGGAGTAAGTTAAC 57.035 36.000 9.96 9.96 45.52 2.01
1628 1691 8.208224 TCAATGTGAACTTGAGGAGTAAGTTAA 58.792 33.333 3.39 0.00 45.52 2.01
1629 1692 7.732025 TCAATGTGAACTTGAGGAGTAAGTTA 58.268 34.615 3.39 0.00 45.52 2.24
1647 1710 6.319658 ACTCCTTATTATTGTGGCTCAATGTG 59.680 38.462 21.52 9.31 45.14 3.21
1660 1723 5.036117 ACGGCACATCACTCCTTATTATT 57.964 39.130 0.00 0.00 0.00 1.40
1661 1724 4.689612 ACGGCACATCACTCCTTATTAT 57.310 40.909 0.00 0.00 0.00 1.28
1662 1725 4.188462 CAACGGCACATCACTCCTTATTA 58.812 43.478 0.00 0.00 0.00 0.98
1707 1773 2.016318 ACACACACACACACAATCCAG 58.984 47.619 0.00 0.00 0.00 3.86
1862 1930 3.961408 GTCACCTCACCTGTATATCACCT 59.039 47.826 0.00 0.00 0.00 4.00
2040 2108 0.963962 AGCTTTCGGGAACTCGTACA 59.036 50.000 0.00 0.00 0.00 2.90
2044 2112 0.110192 GCAAAGCTTTCGGGAACTCG 60.110 55.000 9.23 0.00 0.00 4.18
2126 2196 0.685097 ACGAGGGACAGCAGCTAAAA 59.315 50.000 0.00 0.00 0.00 1.52
2135 2205 3.391382 GGTGGGGACGAGGGACAG 61.391 72.222 0.00 0.00 0.00 3.51
2326 2397 2.039974 GCCATCATCACACGGCACA 61.040 57.895 0.00 0.00 44.25 4.57
2333 2404 1.221566 CCAGGACGCCATCATCACA 59.778 57.895 0.00 0.00 0.00 3.58
2335 2406 2.190313 GCCAGGACGCCATCATCA 59.810 61.111 0.00 0.00 0.00 3.07
2336 2407 1.451927 TTGCCAGGACGCCATCATC 60.452 57.895 0.00 0.00 0.00 2.92
2338 2409 2.359850 GTTGCCAGGACGCCATCA 60.360 61.111 0.00 0.00 0.00 3.07
2340 2411 2.360350 CAGTTGCCAGGACGCCAT 60.360 61.111 0.00 0.00 0.00 4.40
2458 2557 3.365265 GCTCCAACCGCCACCAAG 61.365 66.667 0.00 0.00 0.00 3.61
2505 2604 0.106894 GGATTCCATCCGTGAGACCC 59.893 60.000 0.00 0.00 40.13 4.46
2561 2660 2.125713 CATACACAGCACCGCGGA 60.126 61.111 35.90 6.79 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.