Multiple sequence alignment - TraesCS2B01G023200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G023200 chr2B 100.000 4557 0 0 1 4557 10863297 10858741 0.000000e+00 8416.0
1 TraesCS2B01G023200 chr2A 89.616 2032 153 28 1 1995 499615 501625 0.000000e+00 2531.0
2 TraesCS2B01G023200 chr2A 92.686 1668 70 20 2383 4019 502007 503653 0.000000e+00 2357.0
3 TraesCS2B01G023200 chr2A 86.978 407 20 13 4044 4429 503770 504164 1.170000e-115 427.0
4 TraesCS2B01G023200 chr2A 86.571 350 28 7 2030 2373 501626 501962 7.200000e-98 368.0
5 TraesCS2B01G023200 chr2A 81.081 259 10 16 3812 4031 509371 509629 2.180000e-38 171.0
6 TraesCS2B01G023200 chr2A 92.381 105 8 0 4162 4266 510531 510635 2.840000e-32 150.0
7 TraesCS2B01G023200 chr2A 82.955 88 7 3 3377 3456 618304 618217 6.320000e-09 73.1
8 TraesCS2B01G023200 chr2D 93.645 1495 61 10 2575 4046 387997 389480 0.000000e+00 2204.0
9 TraesCS2B01G023200 chr2D 93.590 1404 43 15 621 1995 385999 387384 0.000000e+00 2050.0
10 TraesCS2B01G023200 chr2D 81.793 1071 117 37 2891 3920 634833304 634834337 0.000000e+00 826.0
11 TraesCS2B01G023200 chr2D 83.838 594 62 3 1 561 385379 385971 6.710000e-148 534.0
12 TraesCS2B01G023200 chr2D 88.728 346 29 7 2030 2373 387385 387722 9.120000e-112 414.0
13 TraesCS2B01G023200 chr2D 93.434 198 10 2 2373 2570 387757 387951 1.600000e-74 291.0
14 TraesCS2B01G023200 chr2D 86.159 289 16 11 4043 4311 389517 389801 1.600000e-74 291.0
15 TraesCS2B01G023200 chr2D 94.595 74 4 0 3973 4046 634834913 634834986 1.040000e-21 115.0
16 TraesCS2B01G023200 chr2D 94.340 53 3 0 4365 4417 389809 389861 1.050000e-11 82.4
17 TraesCS2B01G023200 chr3B 81.895 475 78 7 2889 3359 733436237 733435767 1.190000e-105 394.0
18 TraesCS2B01G023200 chr1D 75.870 431 45 27 4043 4434 452995551 452995141 1.010000e-36 165.0
19 TraesCS2B01G023200 chr1A 75.694 432 45 28 4043 4434 547827585 547827174 1.310000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G023200 chr2B 10858741 10863297 4556 True 8416.000000 8416 100.000000 1 4557 1 chr2B.!!$R1 4556
1 TraesCS2B01G023200 chr2A 499615 504164 4549 False 1420.750000 2531 88.962750 1 4429 4 chr2A.!!$F1 4428
2 TraesCS2B01G023200 chr2D 385379 389861 4482 False 838.057143 2204 90.533429 1 4417 7 chr2D.!!$F1 4416
3 TraesCS2B01G023200 chr2D 634833304 634834986 1682 False 470.500000 826 88.194000 2891 4046 2 chr2D.!!$F2 1155

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
688 739 0.179062 CGATGGGCTCTTTCTGGAGG 60.179 60.000 0.0 0.0 34.21 4.30 F
1484 1559 1.228228 GCAATGGGAGGGATCAGCA 59.772 57.895 0.0 0.0 0.00 4.41 F
2026 2121 0.519961 AAATTACACCGACGCCAAGC 59.480 50.000 0.0 0.0 0.00 4.01 F
3413 3599 0.179073 CCAGAATAGGACCGCACCAG 60.179 60.000 0.0 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1491 1566 0.251634 CCCTCTTCCTCTTCAGCACC 59.748 60.0 0.0 0.0 0.00 5.01 R
2847 3026 0.175760 GCTCGCCTGTTCTATGACCA 59.824 55.0 0.0 0.0 0.00 4.02 R
3507 3693 0.461339 ACTCTGAACGCAAACGGTGT 60.461 50.0 0.0 0.0 41.26 4.16 R
4332 5229 0.532115 CACCACCAAAGCTAATGCCC 59.468 55.0 0.0 0.0 40.80 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
186 228 4.287781 TTGGTTGCGGCTCGTCGA 62.288 61.111 0.00 0.00 0.00 4.20
232 274 0.247460 CATGCCAGACTTCTCGACCA 59.753 55.000 0.00 0.00 0.00 4.02
258 300 2.127708 GGAGTATGGAAGTGGGGTGAT 58.872 52.381 0.00 0.00 0.00 3.06
277 319 2.052690 GCAGGTGAGGGACTAGCGA 61.053 63.158 0.00 0.00 41.55 4.93
279 321 0.895530 CAGGTGAGGGACTAGCGAAA 59.104 55.000 0.00 0.00 41.55 3.46
308 350 1.146041 GCCATGGCCGATGTAGTGA 59.854 57.895 27.24 0.00 34.56 3.41
324 366 0.947244 GTGAGATTAGGGGCATTGCG 59.053 55.000 1.91 0.00 0.00 4.85
328 370 2.887152 GAGATTAGGGGCATTGCGATTT 59.113 45.455 1.91 0.00 0.00 2.17
341 389 6.311200 GGCATTGCGATTTCTTTTTCACTTAT 59.689 34.615 1.91 0.00 0.00 1.73
342 390 7.148590 GGCATTGCGATTTCTTTTTCACTTATT 60.149 33.333 1.91 0.00 0.00 1.40
346 394 7.421599 TGCGATTTCTTTTTCACTTATTGACA 58.578 30.769 0.00 0.00 32.26 3.58
351 399 7.889873 TTCTTTTTCACTTATTGACAGGGAA 57.110 32.000 0.00 0.00 32.26 3.97
368 416 1.558294 GGAAGTTAGGGATTCACGGGT 59.442 52.381 0.00 0.00 0.00 5.28
432 482 1.067416 GGCGTCCATCTCGTGCATA 59.933 57.895 0.00 0.00 0.00 3.14
437 487 2.803133 CGTCCATCTCGTGCATATTGGT 60.803 50.000 0.00 0.00 0.00 3.67
454 504 1.503542 GTGGCTCCACGCAATGAAG 59.496 57.895 2.97 0.00 41.67 3.02
456 506 2.409870 GGCTCCACGCAATGAAGGG 61.410 63.158 0.00 0.00 41.67 3.95
504 554 1.003118 AGCGCCATCTAGGTCAAAACA 59.997 47.619 2.29 0.00 40.61 2.83
540 590 2.483745 GACCGTCGAGCGATGTCA 59.516 61.111 15.78 0.00 44.77 3.58
541 591 1.064296 GACCGTCGAGCGATGTCAT 59.936 57.895 15.78 0.00 44.77 3.06
561 611 3.461773 CGAGGCGATCCCACTGGT 61.462 66.667 3.45 0.00 35.39 4.00
562 612 2.187946 GAGGCGATCCCACTGGTG 59.812 66.667 3.45 0.00 35.39 4.17
576 627 3.319198 GGTGGGGGAAGACGCTGA 61.319 66.667 0.00 0.00 0.00 4.26
579 630 0.322546 GTGGGGGAAGACGCTGATTT 60.323 55.000 0.00 0.00 0.00 2.17
581 632 1.209504 TGGGGGAAGACGCTGATTTAG 59.790 52.381 0.00 0.00 0.00 1.85
599 650 2.431771 CCATCACGACGACCGCAA 60.432 61.111 0.00 0.00 43.32 4.85
603 654 1.554042 ATCACGACGACCGCAAACAC 61.554 55.000 0.00 0.00 43.32 3.32
604 655 2.963320 ACGACGACCGCAAACACC 60.963 61.111 0.00 0.00 43.32 4.16
605 656 3.708734 CGACGACCGCAAACACCC 61.709 66.667 0.00 0.00 0.00 4.61
647 698 4.816385 ACCCGCTTACATCATCTTGTTATG 59.184 41.667 0.00 0.00 0.00 1.90
683 734 1.134280 CATGGACGATGGGCTCTTTCT 60.134 52.381 0.00 0.00 0.00 2.52
688 739 0.179062 CGATGGGCTCTTTCTGGAGG 60.179 60.000 0.00 0.00 34.21 4.30
727 782 5.962433 AGAATACTTCCGAAATCTGTTCGA 58.038 37.500 9.89 0.00 43.97 3.71
826 881 7.095695 TGCCTAAAGTAATTGCTCCAAATAC 57.904 36.000 0.00 0.00 31.96 1.89
1155 1215 2.757099 GAGGTCTACCCCGGCGAA 60.757 66.667 9.30 0.00 36.42 4.70
1271 1331 3.063084 GTCCTCGTCGCCCTCTGT 61.063 66.667 0.00 0.00 0.00 3.41
1272 1332 2.750637 TCCTCGTCGCCCTCTGTC 60.751 66.667 0.00 0.00 0.00 3.51
1273 1333 4.180946 CCTCGTCGCCCTCTGTCG 62.181 72.222 0.00 0.00 0.00 4.35
1274 1334 4.180946 CTCGTCGCCCTCTGTCGG 62.181 72.222 0.00 0.00 0.00 4.79
1423 1483 2.755876 ACGAGATGCGGCAGGAGA 60.756 61.111 9.25 0.00 46.49 3.71
1462 1525 2.092753 GCCAATGGAGTTGAGATGGAGA 60.093 50.000 2.05 0.00 40.37 3.71
1484 1559 1.228228 GCAATGGGAGGGATCAGCA 59.772 57.895 0.00 0.00 0.00 4.41
1488 1563 1.992519 ATGGGAGGGATCAGCAGCAC 61.993 60.000 0.00 0.00 0.00 4.40
1491 1566 3.746949 GAGGGATCAGCAGCACGGG 62.747 68.421 0.00 0.00 0.00 5.28
1493 1568 4.101448 GGATCAGCAGCACGGGGT 62.101 66.667 0.00 0.00 0.00 4.95
1820 1900 8.437360 TTGGATTACTTCAGCAATACATACAG 57.563 34.615 0.00 0.00 0.00 2.74
1821 1901 6.483307 TGGATTACTTCAGCAATACATACAGC 59.517 38.462 0.00 0.00 0.00 4.40
1822 1902 6.483307 GGATTACTTCAGCAATACATACAGCA 59.517 38.462 0.00 0.00 0.00 4.41
1826 1906 7.864108 ACTTCAGCAATACATACAGCAATAA 57.136 32.000 0.00 0.00 0.00 1.40
1828 1908 8.184192 ACTTCAGCAATACATACAGCAATAAAC 58.816 33.333 0.00 0.00 0.00 2.01
1913 2008 5.477637 TCGTTTTCCTTTTAAATACCCCTGG 59.522 40.000 0.00 0.00 0.00 4.45
1914 2009 5.477637 CGTTTTCCTTTTAAATACCCCTGGA 59.522 40.000 0.00 0.00 0.00 3.86
1915 2010 6.015265 CGTTTTCCTTTTAAATACCCCTGGAA 60.015 38.462 0.00 0.00 0.00 3.53
1916 2011 7.471679 CGTTTTCCTTTTAAATACCCCTGGAAA 60.472 37.037 0.00 0.00 39.57 3.13
1995 2090 4.255301 TGCTCGTGGTCGGTAATTTAAAT 58.745 39.130 0.00 0.00 37.69 1.40
1996 2091 5.417811 TGCTCGTGGTCGGTAATTTAAATA 58.582 37.500 0.01 0.00 37.69 1.40
1997 2092 5.291614 TGCTCGTGGTCGGTAATTTAAATAC 59.708 40.000 0.01 0.90 37.69 1.89
1998 2093 5.277011 GCTCGTGGTCGGTAATTTAAATACC 60.277 44.000 0.01 5.69 37.69 2.73
1999 2094 5.976458 TCGTGGTCGGTAATTTAAATACCT 58.024 37.500 15.02 0.00 37.69 3.08
2000 2095 6.042143 TCGTGGTCGGTAATTTAAATACCTC 58.958 40.000 15.02 11.56 37.69 3.85
2001 2096 5.234972 CGTGGTCGGTAATTTAAATACCTCC 59.765 44.000 15.02 16.74 0.00 4.30
2002 2097 5.234972 GTGGTCGGTAATTTAAATACCTCCG 59.765 44.000 15.02 16.90 38.36 4.63
2003 2098 5.104982 TGGTCGGTAATTTAAATACCTCCGT 60.105 40.000 21.16 3.52 38.21 4.69
2004 2099 6.097554 TGGTCGGTAATTTAAATACCTCCGTA 59.902 38.462 21.16 12.37 38.21 4.02
2005 2100 7.154656 GGTCGGTAATTTAAATACCTCCGTAT 58.845 38.462 21.16 2.43 36.72 3.06
2006 2101 7.329471 GGTCGGTAATTTAAATACCTCCGTATC 59.671 40.741 21.16 15.88 33.90 2.24
2007 2102 7.867403 GTCGGTAATTTAAATACCTCCGTATCA 59.133 37.037 21.16 9.01 33.90 2.15
2008 2103 8.420222 TCGGTAATTTAAATACCTCCGTATCAA 58.580 33.333 21.16 8.78 33.90 2.57
2009 2104 9.044150 CGGTAATTTAAATACCTCCGTATCAAA 57.956 33.333 17.40 0.00 33.90 2.69
2016 2111 7.797038 AAATACCTCCGTATCAAATTACACC 57.203 36.000 0.00 0.00 33.90 4.16
2017 2112 3.788937 ACCTCCGTATCAAATTACACCG 58.211 45.455 0.00 0.00 0.00 4.94
2018 2113 3.448301 ACCTCCGTATCAAATTACACCGA 59.552 43.478 0.00 0.00 0.00 4.69
2019 2114 3.800506 CCTCCGTATCAAATTACACCGAC 59.199 47.826 0.00 0.00 0.00 4.79
2020 2115 3.437428 TCCGTATCAAATTACACCGACG 58.563 45.455 0.00 0.00 0.00 5.12
2021 2116 2.034339 CCGTATCAAATTACACCGACGC 60.034 50.000 0.00 0.00 0.00 5.19
2022 2117 2.034339 CGTATCAAATTACACCGACGCC 60.034 50.000 0.00 0.00 0.00 5.68
2023 2118 2.102070 ATCAAATTACACCGACGCCA 57.898 45.000 0.00 0.00 0.00 5.69
2024 2119 1.880271 TCAAATTACACCGACGCCAA 58.120 45.000 0.00 0.00 0.00 4.52
2025 2120 1.801771 TCAAATTACACCGACGCCAAG 59.198 47.619 0.00 0.00 0.00 3.61
2026 2121 0.519961 AAATTACACCGACGCCAAGC 59.480 50.000 0.00 0.00 0.00 4.01
2052 2147 2.301870 CCTTAGTGCCACTGGACTGTAA 59.698 50.000 7.83 0.00 0.00 2.41
2058 2153 2.280628 GCCACTGGACTGTAATAGTGC 58.719 52.381 0.00 0.00 46.86 4.40
2067 2162 4.372656 GACTGTAATAGTGCAGATCCACC 58.627 47.826 15.29 0.00 39.68 4.61
2166 2265 8.458843 GTCTTTTCATTAGTGCTTTAATGCCTA 58.541 33.333 10.54 8.58 39.67 3.93
2174 2273 5.766590 AGTGCTTTAATGCCTAAATACCCT 58.233 37.500 10.54 0.00 0.00 4.34
2220 2319 3.456380 ACCCTACAAATGGAGCATTGT 57.544 42.857 0.00 0.00 34.04 2.71
2242 2341 9.678941 ATTGTCGTTCCTTTTCTTTCTAATTTC 57.321 29.630 0.00 0.00 0.00 2.17
2269 2368 3.018856 TGCAGATTGGATGCTGGTAAAG 58.981 45.455 0.00 0.00 44.17 1.85
2280 2379 4.301072 TGCTGGTAAAGGAGCATTTAGT 57.699 40.909 0.00 0.00 40.30 2.24
2282 2381 6.001449 TGCTGGTAAAGGAGCATTTAGTAT 57.999 37.500 0.00 0.00 40.30 2.12
2283 2382 6.423182 TGCTGGTAAAGGAGCATTTAGTATT 58.577 36.000 0.00 0.00 40.30 1.89
2284 2383 6.889722 TGCTGGTAAAGGAGCATTTAGTATTT 59.110 34.615 0.00 0.00 40.30 1.40
2286 2385 7.915923 GCTGGTAAAGGAGCATTTAGTATTTTC 59.084 37.037 0.00 0.00 34.32 2.29
2331 2430 5.010820 TGCATCAATCTTCATTTTGGTGACA 59.989 36.000 0.35 0.00 36.30 3.58
2334 2433 6.653526 TCAATCTTCATTTTGGTGACATGT 57.346 33.333 0.00 0.00 42.32 3.21
2342 2441 8.586879 TTCATTTTGGTGACATGTTATATGGA 57.413 30.769 0.00 0.00 42.32 3.41
2373 2472 1.336440 TGTGTGAACTTCCCATTTGCG 59.664 47.619 0.00 0.00 0.00 4.85
2375 2474 1.243902 GTGAACTTCCCATTTGCGGA 58.756 50.000 0.00 0.00 0.00 5.54
2376 2475 1.818674 GTGAACTTCCCATTTGCGGAT 59.181 47.619 0.00 0.00 0.00 4.18
2377 2476 2.091541 TGAACTTCCCATTTGCGGATC 58.908 47.619 0.00 0.00 0.00 3.36
2379 2478 0.625849 ACTTCCCATTTGCGGATCCT 59.374 50.000 10.75 0.00 0.00 3.24
2436 2572 7.271223 GCTTAAGCATTACACTGTGTACAATTG 59.729 37.037 22.59 14.86 41.59 2.32
2467 2603 6.440647 ACAGTATCTTTACTCCCTGATGTTCA 59.559 38.462 0.00 0.00 36.50 3.18
2468 2604 6.983307 CAGTATCTTTACTCCCTGATGTTCAG 59.017 42.308 0.00 0.00 39.13 3.02
2469 2605 6.098982 AGTATCTTTACTCCCTGATGTTCAGG 59.901 42.308 15.26 15.26 45.14 3.86
2491 2627 3.402110 GCATGTATCATTGGGATGACGA 58.598 45.455 0.00 0.00 44.64 4.20
2551 2687 1.335145 CCCCGGATATTACCTGTCGT 58.665 55.000 0.73 0.00 0.00 4.34
2632 2809 8.993424 TCCCCTATAAATAGAGCTATGAAATCC 58.007 37.037 0.00 0.00 32.05 3.01
2644 2821 5.893824 AGCTATGAAATCCTACCTTTTTGGG 59.106 40.000 0.00 0.00 41.11 4.12
2696 2873 7.277981 ACATTTCGTATTCATAGTCACTGAACC 59.722 37.037 0.00 0.00 35.57 3.62
2798 2977 4.033932 GCAAAATTGTTCAACAACCTGGTC 59.966 41.667 4.73 0.00 41.40 4.02
2847 3026 5.512298 TGTTGATGTGAATGGATCCTCAAT 58.488 37.500 14.23 5.96 0.00 2.57
2927 3106 2.305052 AGGAACAAACTACTAGTGGGCC 59.695 50.000 11.30 0.00 0.00 5.80
2989 3168 2.285083 CCTGAAAATTACGGCGATCCA 58.715 47.619 16.62 0.33 0.00 3.41
3087 3266 3.129287 CGTATTGGCAAAGGCAGAGAATT 59.871 43.478 3.01 0.00 43.71 2.17
3088 3267 3.881937 ATTGGCAAAGGCAGAGAATTC 57.118 42.857 3.01 0.00 43.71 2.17
3296 3475 2.507944 CGCCATCTCCAGGAAGGG 59.492 66.667 0.00 0.00 38.24 3.95
3413 3599 0.179073 CCAGAATAGGACCGCACCAG 60.179 60.000 0.00 0.00 0.00 4.00
3518 3704 2.353376 CCAAGCACACCGTTTGCG 60.353 61.111 4.06 0.00 45.15 4.85
3593 3779 2.623418 TCTAGGAGGCTGGTTGAAGA 57.377 50.000 0.00 0.00 0.00 2.87
3609 3795 7.332557 TGGTTGAAGACTGTTAAGTAGTTTGA 58.667 34.615 0.00 0.00 36.52 2.69
3643 3840 4.714308 GGTCCCCATTCATTGATTTGGTTA 59.286 41.667 12.61 1.66 0.00 2.85
3644 3841 5.366477 GGTCCCCATTCATTGATTTGGTTAT 59.634 40.000 12.61 0.00 0.00 1.89
3645 3842 6.282930 GTCCCCATTCATTGATTTGGTTATG 58.717 40.000 12.61 1.78 0.00 1.90
3646 3843 5.058490 CCCCATTCATTGATTTGGTTATGC 58.942 41.667 12.61 0.00 0.00 3.14
3647 3844 5.058490 CCCATTCATTGATTTGGTTATGCC 58.942 41.667 12.61 0.00 37.90 4.40
3648 3845 5.058490 CCATTCATTGATTTGGTTATGCCC 58.942 41.667 7.63 0.00 36.04 5.36
3649 3846 5.396548 CCATTCATTGATTTGGTTATGCCCA 60.397 40.000 7.63 0.00 36.04 5.36
3650 3847 5.954153 TTCATTGATTTGGTTATGCCCAT 57.046 34.783 0.00 0.00 33.60 4.00
3668 3865 3.056393 CCCATGACATTGCACATCAGTTT 60.056 43.478 0.00 0.00 0.00 2.66
3669 3866 4.561938 CCCATGACATTGCACATCAGTTTT 60.562 41.667 0.00 0.00 0.00 2.43
3736 3938 2.557924 TGCCAGCAATCGAAGTTTTGAT 59.442 40.909 0.72 0.00 32.69 2.57
3743 3965 5.066505 AGCAATCGAAGTTTTGATATGGACC 59.933 40.000 0.72 0.00 31.13 4.46
3823 4056 2.594131 GAGGCCCCAACAGTAAACTTT 58.406 47.619 0.00 0.00 0.00 2.66
3824 4057 2.296190 GAGGCCCCAACAGTAAACTTTG 59.704 50.000 0.00 0.00 0.00 2.77
3866 4099 5.494341 TGAGGAGGATATATAGAGGCAGAGT 59.506 44.000 0.00 0.00 0.00 3.24
3953 4707 2.890311 CAGAGAGAACCTGACTGAGTGT 59.110 50.000 0.00 0.00 33.65 3.55
3974 4753 9.627395 GAGTGTTATCATCATGTATACCTGTAC 57.373 37.037 7.86 0.00 0.00 2.90
4070 4941 6.984474 TGTTGAGGTTAGTCTTGTGAAACTAG 59.016 38.462 0.00 0.00 41.16 2.57
4076 4947 6.018180 GGTTAGTCTTGTGAAACTAGTGTTGG 60.018 42.308 0.00 0.00 40.64 3.77
4084 4955 5.353123 TGTGAAACTAGTGTTGGAGTTGTTC 59.647 40.000 0.00 0.00 36.05 3.18
4160 5045 8.150945 ACATGTCTGTTTTAGTCTATGAGTTGT 58.849 33.333 0.00 0.00 28.70 3.32
4161 5046 8.993121 CATGTCTGTTTTAGTCTATGAGTTGTT 58.007 33.333 0.00 0.00 0.00 2.83
4162 5047 8.958119 TGTCTGTTTTAGTCTATGAGTTGTTT 57.042 30.769 0.00 0.00 0.00 2.83
4219 5104 8.800370 TGTCAAATATTATCAACCTAAGCACA 57.200 30.769 0.00 0.00 0.00 4.57
4221 5106 9.503427 GTCAAATATTATCAACCTAAGCACAAC 57.497 33.333 0.00 0.00 0.00 3.32
4223 5108 9.289303 CAAATATTATCAACCTAAGCACAACAC 57.711 33.333 0.00 0.00 0.00 3.32
4224 5109 8.807948 AATATTATCAACCTAAGCACAACACT 57.192 30.769 0.00 0.00 0.00 3.55
4226 5111 4.836125 ATCAACCTAAGCACAACACTTG 57.164 40.909 0.00 0.00 0.00 3.16
4244 5136 4.508124 CACTTGTTTACTCCTCTGTCACAC 59.492 45.833 0.00 0.00 0.00 3.82
4273 5165 3.476552 GACAGATAAATGGGAATCGGCA 58.523 45.455 0.00 0.00 0.00 5.69
4274 5166 3.480470 ACAGATAAATGGGAATCGGCAG 58.520 45.455 0.00 0.00 0.00 4.85
4314 5211 9.475620 TCTGATGTACTAGAATCTAGTTCCAAA 57.524 33.333 25.74 14.55 37.56 3.28
4356 5253 2.940994 TTAGCTTTGGTGGTGCTGTA 57.059 45.000 0.00 0.00 37.62 2.74
4404 5301 3.499737 GGTGCAAGATGACGGCGG 61.500 66.667 13.24 0.00 0.00 6.13
4421 5318 2.641559 GCGTCTTGCTGCTGCTTT 59.358 55.556 17.00 0.00 41.73 3.51
4422 5319 1.728426 GCGTCTTGCTGCTGCTTTG 60.728 57.895 17.00 6.88 41.73 2.77
4423 5320 1.728426 CGTCTTGCTGCTGCTTTGC 60.728 57.895 17.00 3.60 40.48 3.68
4424 5321 1.728426 GTCTTGCTGCTGCTTTGCG 60.728 57.895 17.00 1.19 40.48 4.85
4425 5322 1.893335 TCTTGCTGCTGCTTTGCGA 60.893 52.632 17.00 2.17 40.48 5.10
4426 5323 1.728426 CTTGCTGCTGCTTTGCGAC 60.728 57.895 17.00 0.00 40.48 5.19
4427 5324 2.126417 CTTGCTGCTGCTTTGCGACT 62.126 55.000 17.00 0.00 40.48 4.18
4428 5325 2.126965 GCTGCTGCTTTGCGACTG 60.127 61.111 8.53 0.00 36.03 3.51
4429 5326 2.559840 CTGCTGCTTTGCGACTGG 59.440 61.111 0.00 0.00 35.36 4.00
4430 5327 3.606065 CTGCTGCTTTGCGACTGGC 62.606 63.158 0.00 0.00 43.96 4.85
4431 5328 4.410743 GCTGCTTTGCGACTGGCC 62.411 66.667 0.00 0.00 42.61 5.36
4432 5329 2.979676 CTGCTTTGCGACTGGCCA 60.980 61.111 4.71 4.71 42.61 5.36
4433 5330 2.282391 TGCTTTGCGACTGGCCAT 60.282 55.556 5.51 0.00 42.61 4.40
4434 5331 2.180017 GCTTTGCGACTGGCCATG 59.820 61.111 5.51 2.78 42.61 3.66
4435 5332 2.629656 GCTTTGCGACTGGCCATGT 61.630 57.895 5.51 6.74 42.61 3.21
4436 5333 1.959085 CTTTGCGACTGGCCATGTT 59.041 52.632 5.51 0.00 42.61 2.71
4437 5334 0.314935 CTTTGCGACTGGCCATGTTT 59.685 50.000 5.51 0.00 42.61 2.83
4438 5335 1.539388 CTTTGCGACTGGCCATGTTTA 59.461 47.619 5.51 0.00 42.61 2.01
4439 5336 1.832883 TTGCGACTGGCCATGTTTAT 58.167 45.000 5.51 0.00 42.61 1.40
4440 5337 1.093972 TGCGACTGGCCATGTTTATG 58.906 50.000 5.51 0.00 42.61 1.90
4441 5338 1.094785 GCGACTGGCCATGTTTATGT 58.905 50.000 5.51 0.00 34.80 2.29
4442 5339 1.472480 GCGACTGGCCATGTTTATGTT 59.528 47.619 5.51 0.00 34.80 2.71
4443 5340 2.094752 GCGACTGGCCATGTTTATGTTT 60.095 45.455 5.51 0.00 34.80 2.83
4444 5341 3.500982 CGACTGGCCATGTTTATGTTTG 58.499 45.455 5.51 0.00 32.21 2.93
4445 5342 3.057596 CGACTGGCCATGTTTATGTTTGT 60.058 43.478 5.51 0.00 32.21 2.83
4446 5343 4.155099 CGACTGGCCATGTTTATGTTTGTA 59.845 41.667 5.51 0.00 32.21 2.41
4447 5344 5.640732 GACTGGCCATGTTTATGTTTGTAG 58.359 41.667 5.51 0.00 32.21 2.74
4448 5345 5.076873 ACTGGCCATGTTTATGTTTGTAGT 58.923 37.500 5.51 0.00 32.21 2.73
4449 5346 5.048083 ACTGGCCATGTTTATGTTTGTAGTG 60.048 40.000 5.51 0.00 32.21 2.74
4450 5347 4.830046 TGGCCATGTTTATGTTTGTAGTGT 59.170 37.500 0.00 0.00 32.21 3.55
4451 5348 6.004574 TGGCCATGTTTATGTTTGTAGTGTA 58.995 36.000 0.00 0.00 32.21 2.90
4452 5349 6.490381 TGGCCATGTTTATGTTTGTAGTGTAA 59.510 34.615 0.00 0.00 32.21 2.41
4453 5350 7.177568 TGGCCATGTTTATGTTTGTAGTGTAAT 59.822 33.333 0.00 0.00 32.21 1.89
4454 5351 8.679100 GGCCATGTTTATGTTTGTAGTGTAATA 58.321 33.333 0.00 0.00 32.21 0.98
4465 5362 9.562408 TGTTTGTAGTGTAATAACCAAATCTGA 57.438 29.630 0.00 0.00 0.00 3.27
4468 5365 9.653287 TTGTAGTGTAATAACCAAATCTGAGAG 57.347 33.333 0.00 0.00 0.00 3.20
4469 5366 7.764443 TGTAGTGTAATAACCAAATCTGAGAGC 59.236 37.037 0.00 0.00 0.00 4.09
4470 5367 6.951971 AGTGTAATAACCAAATCTGAGAGCT 58.048 36.000 0.00 0.00 0.00 4.09
4471 5368 6.820656 AGTGTAATAACCAAATCTGAGAGCTG 59.179 38.462 0.00 0.00 0.00 4.24
4472 5369 5.586243 TGTAATAACCAAATCTGAGAGCTGC 59.414 40.000 0.00 0.00 0.00 5.25
4473 5370 2.574006 AACCAAATCTGAGAGCTGCA 57.426 45.000 1.02 0.00 0.00 4.41
4474 5371 2.574006 ACCAAATCTGAGAGCTGCAA 57.426 45.000 1.02 0.00 0.00 4.08
4475 5372 2.157738 ACCAAATCTGAGAGCTGCAAC 58.842 47.619 1.02 0.00 0.00 4.17
4476 5373 2.224719 ACCAAATCTGAGAGCTGCAACT 60.225 45.455 1.02 0.09 0.00 3.16
4477 5374 2.161808 CCAAATCTGAGAGCTGCAACTG 59.838 50.000 1.02 0.00 0.00 3.16
4478 5375 2.812591 CAAATCTGAGAGCTGCAACTGT 59.187 45.455 1.02 0.00 0.00 3.55
4479 5376 3.969287 AATCTGAGAGCTGCAACTGTA 57.031 42.857 1.02 0.00 0.00 2.74
4480 5377 3.969287 ATCTGAGAGCTGCAACTGTAA 57.031 42.857 1.02 0.00 0.00 2.41
4481 5378 3.751479 TCTGAGAGCTGCAACTGTAAA 57.249 42.857 1.02 0.00 0.00 2.01
4482 5379 3.393800 TCTGAGAGCTGCAACTGTAAAC 58.606 45.455 1.02 0.00 0.00 2.01
4483 5380 3.070159 TCTGAGAGCTGCAACTGTAAACT 59.930 43.478 1.02 0.00 0.00 2.66
4484 5381 4.280929 TCTGAGAGCTGCAACTGTAAACTA 59.719 41.667 1.02 0.00 0.00 2.24
4485 5382 4.560128 TGAGAGCTGCAACTGTAAACTAG 58.440 43.478 1.02 0.00 0.00 2.57
4486 5383 3.330267 AGAGCTGCAACTGTAAACTAGC 58.670 45.455 1.02 0.00 0.00 3.42
4487 5384 3.007398 AGAGCTGCAACTGTAAACTAGCT 59.993 43.478 1.02 0.00 42.18 3.32
4488 5385 3.744660 AGCTGCAACTGTAAACTAGCTT 58.255 40.909 1.02 0.00 36.72 3.74
4489 5386 3.499918 AGCTGCAACTGTAAACTAGCTTG 59.500 43.478 1.02 0.00 36.72 4.01
4490 5387 3.251004 GCTGCAACTGTAAACTAGCTTGT 59.749 43.478 0.00 0.00 0.00 3.16
4491 5388 4.776743 CTGCAACTGTAAACTAGCTTGTG 58.223 43.478 0.36 0.00 0.00 3.33
4492 5389 3.563808 TGCAACTGTAAACTAGCTTGTGG 59.436 43.478 0.36 0.00 0.00 4.17
4493 5390 3.609409 GCAACTGTAAACTAGCTTGTGGC 60.609 47.826 0.36 0.00 42.19 5.01
4502 5399 3.132084 GCTTGTGGCTTGTGGCTT 58.868 55.556 0.00 0.00 41.46 4.35
4503 5400 1.442987 GCTTGTGGCTTGTGGCTTT 59.557 52.632 0.00 0.00 41.46 3.51
4504 5401 0.877213 GCTTGTGGCTTGTGGCTTTG 60.877 55.000 0.00 0.00 41.46 2.77
4505 5402 0.746063 CTTGTGGCTTGTGGCTTTGA 59.254 50.000 0.00 0.00 41.46 2.69
4506 5403 1.136695 CTTGTGGCTTGTGGCTTTGAA 59.863 47.619 0.00 0.00 41.46 2.69
4507 5404 1.189752 TGTGGCTTGTGGCTTTGAAA 58.810 45.000 0.00 0.00 41.46 2.69
4508 5405 1.761784 TGTGGCTTGTGGCTTTGAAAT 59.238 42.857 0.00 0.00 41.46 2.17
4509 5406 2.224018 TGTGGCTTGTGGCTTTGAAATC 60.224 45.455 0.00 0.00 41.46 2.17
4510 5407 2.036346 GTGGCTTGTGGCTTTGAAATCT 59.964 45.455 0.00 0.00 41.46 2.40
4511 5408 2.036217 TGGCTTGTGGCTTTGAAATCTG 59.964 45.455 0.00 0.00 41.46 2.90
4512 5409 2.064014 GCTTGTGGCTTTGAAATCTGC 58.936 47.619 0.00 0.00 38.06 4.26
4513 5410 2.546373 GCTTGTGGCTTTGAAATCTGCA 60.546 45.455 0.00 0.00 38.06 4.41
4514 5411 3.314553 CTTGTGGCTTTGAAATCTGCAG 58.685 45.455 7.63 7.63 0.00 4.41
4515 5412 2.309613 TGTGGCTTTGAAATCTGCAGT 58.690 42.857 14.67 0.00 0.00 4.40
4516 5413 2.294233 TGTGGCTTTGAAATCTGCAGTC 59.706 45.455 14.67 4.61 0.00 3.51
4517 5414 2.555757 GTGGCTTTGAAATCTGCAGTCT 59.444 45.455 14.67 0.00 0.00 3.24
4518 5415 3.005155 GTGGCTTTGAAATCTGCAGTCTT 59.995 43.478 14.67 8.18 0.00 3.01
4519 5416 3.005050 TGGCTTTGAAATCTGCAGTCTTG 59.995 43.478 14.67 0.62 0.00 3.02
4520 5417 3.005155 GGCTTTGAAATCTGCAGTCTTGT 59.995 43.478 14.67 0.00 0.00 3.16
4521 5418 4.225208 GCTTTGAAATCTGCAGTCTTGTC 58.775 43.478 14.67 5.54 0.00 3.18
4522 5419 4.261322 GCTTTGAAATCTGCAGTCTTGTCA 60.261 41.667 14.67 8.09 0.00 3.58
4523 5420 5.428496 TTTGAAATCTGCAGTCTTGTCAG 57.572 39.130 14.67 0.00 32.93 3.51
4524 5421 4.077300 TGAAATCTGCAGTCTTGTCAGT 57.923 40.909 14.67 0.00 33.22 3.41
4525 5422 3.811497 TGAAATCTGCAGTCTTGTCAGTG 59.189 43.478 14.67 0.00 33.22 3.66
4526 5423 3.482156 AATCTGCAGTCTTGTCAGTGT 57.518 42.857 14.67 0.00 33.22 3.55
4527 5424 2.229675 TCTGCAGTCTTGTCAGTGTG 57.770 50.000 14.67 0.00 33.22 3.82
4528 5425 1.202568 TCTGCAGTCTTGTCAGTGTGG 60.203 52.381 14.67 0.00 33.22 4.17
4529 5426 0.541392 TGCAGTCTTGTCAGTGTGGT 59.459 50.000 0.00 0.00 0.00 4.16
4530 5427 1.065491 TGCAGTCTTGTCAGTGTGGTT 60.065 47.619 0.00 0.00 0.00 3.67
4531 5428 2.017049 GCAGTCTTGTCAGTGTGGTTT 58.983 47.619 0.00 0.00 0.00 3.27
4532 5429 2.032178 GCAGTCTTGTCAGTGTGGTTTC 59.968 50.000 0.00 0.00 0.00 2.78
4533 5430 3.270027 CAGTCTTGTCAGTGTGGTTTCA 58.730 45.455 0.00 0.00 0.00 2.69
4534 5431 3.879295 CAGTCTTGTCAGTGTGGTTTCAT 59.121 43.478 0.00 0.00 0.00 2.57
4535 5432 4.336433 CAGTCTTGTCAGTGTGGTTTCATT 59.664 41.667 0.00 0.00 0.00 2.57
4536 5433 4.949856 AGTCTTGTCAGTGTGGTTTCATTT 59.050 37.500 0.00 0.00 0.00 2.32
4537 5434 5.418840 AGTCTTGTCAGTGTGGTTTCATTTT 59.581 36.000 0.00 0.00 0.00 1.82
4538 5435 5.516339 GTCTTGTCAGTGTGGTTTCATTTTG 59.484 40.000 0.00 0.00 0.00 2.44
4539 5436 5.184864 TCTTGTCAGTGTGGTTTCATTTTGT 59.815 36.000 0.00 0.00 0.00 2.83
4540 5437 5.398603 TGTCAGTGTGGTTTCATTTTGTT 57.601 34.783 0.00 0.00 0.00 2.83
4541 5438 5.167121 TGTCAGTGTGGTTTCATTTTGTTG 58.833 37.500 0.00 0.00 0.00 3.33
4542 5439 4.032786 GTCAGTGTGGTTTCATTTTGTTGC 59.967 41.667 0.00 0.00 0.00 4.17
4543 5440 4.081752 TCAGTGTGGTTTCATTTTGTTGCT 60.082 37.500 0.00 0.00 0.00 3.91
4544 5441 4.033129 CAGTGTGGTTTCATTTTGTTGCTG 59.967 41.667 0.00 0.00 0.00 4.41
4545 5442 2.935201 TGTGGTTTCATTTTGTTGCTGC 59.065 40.909 0.00 0.00 0.00 5.25
4546 5443 2.935201 GTGGTTTCATTTTGTTGCTGCA 59.065 40.909 0.00 0.00 0.00 4.41
4547 5444 3.560896 GTGGTTTCATTTTGTTGCTGCAT 59.439 39.130 1.84 0.00 0.00 3.96
4548 5445 4.035441 GTGGTTTCATTTTGTTGCTGCATT 59.965 37.500 1.84 0.00 0.00 3.56
4549 5446 4.035324 TGGTTTCATTTTGTTGCTGCATTG 59.965 37.500 1.84 0.00 0.00 2.82
4550 5447 4.035441 GGTTTCATTTTGTTGCTGCATTGT 59.965 37.500 1.84 0.00 0.00 2.71
4551 5448 5.236047 GGTTTCATTTTGTTGCTGCATTGTA 59.764 36.000 1.84 0.00 0.00 2.41
4552 5449 5.903764 TTCATTTTGTTGCTGCATTGTAC 57.096 34.783 1.84 0.00 0.00 2.90
4553 5450 3.980134 TCATTTTGTTGCTGCATTGTACG 59.020 39.130 1.84 0.00 0.00 3.67
4554 5451 1.764851 TTTGTTGCTGCATTGTACGC 58.235 45.000 1.84 0.00 0.00 4.42
4555 5452 0.665298 TTGTTGCTGCATTGTACGCA 59.335 45.000 1.84 0.00 37.88 5.24
4556 5453 0.880441 TGTTGCTGCATTGTACGCAT 59.120 45.000 1.84 0.00 39.02 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 8.004215 AGATTATCCTTTTACCATGCCAACATA 58.996 33.333 0.00 0.00 33.67 2.29
49 50 5.988561 CCTCGCTTCTAGAAAGCTCATAATT 59.011 40.000 18.51 0.00 40.94 1.40
186 228 6.552725 TCTCAATCTAGTATGAGATGTGGCTT 59.447 38.462 19.51 0.00 45.27 4.35
232 274 2.482494 CCACTTCCATACTCCTCCCTT 58.518 52.381 0.00 0.00 0.00 3.95
258 300 2.351244 CGCTAGTCCCTCACCTGCA 61.351 63.158 0.00 0.00 0.00 4.41
277 319 2.203625 ATGGCGCCCACCTTGTTT 60.204 55.556 26.77 0.00 35.80 2.83
297 339 2.028930 GCCCCTAATCTCACTACATCGG 60.029 54.545 0.00 0.00 0.00 4.18
308 350 2.664402 AATCGCAATGCCCCTAATCT 57.336 45.000 0.00 0.00 0.00 2.40
324 366 8.576442 TCCCTGTCAATAAGTGAAAAAGAAATC 58.424 33.333 0.00 0.00 38.23 2.17
328 370 7.060421 ACTTCCCTGTCAATAAGTGAAAAAGA 58.940 34.615 0.00 0.00 38.23 2.52
341 389 3.913799 TGAATCCCTAACTTCCCTGTCAA 59.086 43.478 0.00 0.00 0.00 3.18
342 390 3.263425 GTGAATCCCTAACTTCCCTGTCA 59.737 47.826 0.00 0.00 0.00 3.58
346 394 1.838077 CCGTGAATCCCTAACTTCCCT 59.162 52.381 0.00 0.00 0.00 4.20
351 399 2.027469 GTGAACCCGTGAATCCCTAACT 60.027 50.000 0.00 0.00 0.00 2.24
368 416 0.183492 GCCCCCTAGCATCATGTGAA 59.817 55.000 0.00 0.00 0.00 3.18
411 460 4.530857 CACGAGATGGACGCCCCC 62.531 72.222 0.00 0.00 0.00 5.40
423 473 0.940126 GAGCCACCAATATGCACGAG 59.060 55.000 0.00 0.00 0.00 4.18
471 521 2.107141 GCGCTGCCCGACTATTCT 59.893 61.111 0.00 0.00 40.02 2.40
489 539 3.785505 GCGCGAATGTTTTGACCTAGATG 60.786 47.826 12.10 0.00 0.00 2.90
524 574 0.308068 CTATGACATCGCTCGACGGT 59.692 55.000 0.00 0.00 43.89 4.83
535 585 0.244994 GGATCGCCTCGCTATGACAT 59.755 55.000 0.00 0.00 0.00 3.06
536 586 1.660355 GGATCGCCTCGCTATGACA 59.340 57.895 0.00 0.00 0.00 3.58
540 590 1.531840 AGTGGGATCGCCTCGCTAT 60.532 57.895 7.38 0.00 37.69 2.97
541 591 2.123854 AGTGGGATCGCCTCGCTA 60.124 61.111 7.38 0.00 37.69 4.26
561 611 1.209504 CTAAATCAGCGTCTTCCCCCA 59.790 52.381 0.00 0.00 0.00 4.96
562 612 1.954927 CTAAATCAGCGTCTTCCCCC 58.045 55.000 0.00 0.00 0.00 5.40
576 627 1.801395 CGGTCGTCGTGATGGCTAAAT 60.801 52.381 0.00 0.00 0.00 1.40
579 630 2.795973 CGGTCGTCGTGATGGCTA 59.204 61.111 0.00 0.00 0.00 3.93
599 650 2.093128 CCTCACTATTAAGCGGGGTGTT 60.093 50.000 0.00 0.00 0.00 3.32
603 654 4.562963 GGTTATCCTCACTATTAAGCGGGG 60.563 50.000 0.00 0.00 0.00 5.73
604 655 4.562963 GGGTTATCCTCACTATTAAGCGGG 60.563 50.000 0.00 0.00 0.00 6.13
605 656 4.566987 GGGTTATCCTCACTATTAAGCGG 58.433 47.826 0.00 0.00 0.00 5.52
647 698 2.029649 TCCATGAAGAGCAAAAGCAAGC 60.030 45.455 0.00 0.00 0.00 4.01
683 734 4.079154 TCTCCTTACTTCTAGATGCCTCCA 60.079 45.833 5.57 0.00 0.00 3.86
857 912 4.781775 TGGGGAAACAAAGTTGAGAGTA 57.218 40.909 0.00 0.00 0.00 2.59
859 914 3.507622 GGATGGGGAAACAAAGTTGAGAG 59.492 47.826 0.00 0.00 0.00 3.20
860 915 3.117322 TGGATGGGGAAACAAAGTTGAGA 60.117 43.478 0.00 0.00 0.00 3.27
1255 1315 2.750637 GACAGAGGGCGACGAGGA 60.751 66.667 0.00 0.00 0.00 3.71
1256 1316 4.180946 CGACAGAGGGCGACGAGG 62.181 72.222 0.00 0.00 0.00 4.63
1462 1525 1.002069 TGATCCCTCCCATTGCAGTT 58.998 50.000 0.00 0.00 0.00 3.16
1488 1563 1.078848 CTTCCTCTTCAGCACCCCG 60.079 63.158 0.00 0.00 0.00 5.73
1491 1566 0.251634 CCCTCTTCCTCTTCAGCACC 59.748 60.000 0.00 0.00 0.00 5.01
1493 1568 1.905215 CTTCCCTCTTCCTCTTCAGCA 59.095 52.381 0.00 0.00 0.00 4.41
1497 1572 4.512484 CAATGTCTTCCCTCTTCCTCTTC 58.488 47.826 0.00 0.00 0.00 2.87
1820 1900 5.751028 TGTTGCCAACTAACAAGTTTATTGC 59.249 36.000 9.30 0.00 35.29 3.56
1821 1901 7.867403 AGATGTTGCCAACTAACAAGTTTATTG 59.133 33.333 9.30 0.00 40.95 1.90
1822 1902 7.867403 CAGATGTTGCCAACTAACAAGTTTATT 59.133 33.333 9.30 0.00 40.95 1.40
1826 1906 4.644685 ACAGATGTTGCCAACTAACAAGTT 59.355 37.500 9.30 0.00 40.95 2.66
1828 1908 4.836125 ACAGATGTTGCCAACTAACAAG 57.164 40.909 9.30 0.00 40.95 3.16
1836 1923 3.737559 AAGGGATACAGATGTTGCCAA 57.262 42.857 0.00 0.00 39.74 4.52
1931 2026 7.521509 AAACGACAATCTTATCTTTCGGTAG 57.478 36.000 0.00 0.00 0.00 3.18
1939 2034 7.504924 TGGAAACAAAACGACAATCTTATCT 57.495 32.000 0.00 0.00 37.44 1.98
1995 2090 4.644234 TCGGTGTAATTTGATACGGAGGTA 59.356 41.667 0.00 0.00 0.00 3.08
1996 2091 3.448301 TCGGTGTAATTTGATACGGAGGT 59.552 43.478 0.00 0.00 0.00 3.85
1997 2092 3.800506 GTCGGTGTAATTTGATACGGAGG 59.199 47.826 0.00 0.00 0.00 4.30
1998 2093 3.484649 CGTCGGTGTAATTTGATACGGAG 59.515 47.826 0.00 0.00 0.00 4.63
1999 2094 3.437428 CGTCGGTGTAATTTGATACGGA 58.563 45.455 0.00 0.00 0.00 4.69
2000 2095 2.034339 GCGTCGGTGTAATTTGATACGG 60.034 50.000 0.00 0.00 0.00 4.02
2001 2096 2.034339 GGCGTCGGTGTAATTTGATACG 60.034 50.000 0.00 0.00 0.00 3.06
2002 2097 2.931325 TGGCGTCGGTGTAATTTGATAC 59.069 45.455 0.00 0.00 0.00 2.24
2003 2098 3.248495 TGGCGTCGGTGTAATTTGATA 57.752 42.857 0.00 0.00 0.00 2.15
2004 2099 2.102070 TGGCGTCGGTGTAATTTGAT 57.898 45.000 0.00 0.00 0.00 2.57
2005 2100 1.801771 CTTGGCGTCGGTGTAATTTGA 59.198 47.619 0.00 0.00 0.00 2.69
2006 2101 1.727857 GCTTGGCGTCGGTGTAATTTG 60.728 52.381 0.00 0.00 0.00 2.32
2007 2102 0.519961 GCTTGGCGTCGGTGTAATTT 59.480 50.000 0.00 0.00 0.00 1.82
2008 2103 2.168054 GCTTGGCGTCGGTGTAATT 58.832 52.632 0.00 0.00 0.00 1.40
2009 2104 3.884900 GCTTGGCGTCGGTGTAAT 58.115 55.556 0.00 0.00 0.00 1.89
2021 2116 3.499737 CACTAAGGCCGCGCTTGG 61.500 66.667 5.56 4.25 0.00 3.61
2022 2117 4.166011 GCACTAAGGCCGCGCTTG 62.166 66.667 5.56 0.00 0.00 4.01
2052 2147 8.901472 TTATCTAATAGGTGGATCTGCACTAT 57.099 34.615 1.81 0.00 0.00 2.12
2188 2287 4.644163 TTTGTAGGGTAGCTAGCCAAAA 57.356 40.909 36.59 28.93 46.03 2.44
2220 2319 7.718272 TCGAAATTAGAAAGAAAAGGAACGA 57.282 32.000 0.00 0.00 0.00 3.85
2242 2341 1.674441 AGCATCCAATCTGCACAATCG 59.326 47.619 0.00 0.00 42.15 3.34
2297 2396 9.932207 AAATGAAGATTGATGCAGTTAATTTCA 57.068 25.926 0.00 0.00 0.00 2.69
2300 2399 9.158233 CCAAAATGAAGATTGATGCAGTTAATT 57.842 29.630 0.00 0.00 0.00 1.40
2301 2400 8.316214 ACCAAAATGAAGATTGATGCAGTTAAT 58.684 29.630 0.00 0.00 0.00 1.40
2308 2407 5.472148 TGTCACCAAAATGAAGATTGATGC 58.528 37.500 0.00 0.00 0.00 3.91
2310 2409 7.235935 ACATGTCACCAAAATGAAGATTGAT 57.764 32.000 0.00 0.00 0.00 2.57
2331 2430 5.774690 ACATTTTGCCCGATCCATATAACAT 59.225 36.000 0.00 0.00 0.00 2.71
2334 2433 5.009510 CACACATTTTGCCCGATCCATATAA 59.990 40.000 0.00 0.00 0.00 0.98
2340 2439 1.173043 TCACACATTTTGCCCGATCC 58.827 50.000 0.00 0.00 0.00 3.36
2342 2441 2.238521 AGTTCACACATTTTGCCCGAT 58.761 42.857 0.00 0.00 0.00 4.18
2373 2472 2.327325 TGCCCTCTGGTATAGGATCC 57.673 55.000 2.48 2.48 36.08 3.36
2375 2474 4.916424 AGATTTTGCCCTCTGGTATAGGAT 59.084 41.667 0.00 0.00 36.08 3.24
2376 2475 4.103153 CAGATTTTGCCCTCTGGTATAGGA 59.897 45.833 0.00 0.00 36.15 2.94
2377 2476 4.392940 CAGATTTTGCCCTCTGGTATAGG 58.607 47.826 0.00 0.00 36.15 2.57
2436 2572 6.321690 TCAGGGAGTAAAGATACTGTAGCTTC 59.678 42.308 17.61 7.46 42.47 3.86
2467 2603 2.718062 TCATCCCAATGATACATGCCCT 59.282 45.455 0.00 0.00 36.98 5.19
2468 2604 2.821969 GTCATCCCAATGATACATGCCC 59.178 50.000 0.00 0.00 43.62 5.36
2469 2605 2.485426 CGTCATCCCAATGATACATGCC 59.515 50.000 0.00 0.00 43.62 4.40
2470 2606 3.402110 TCGTCATCCCAATGATACATGC 58.598 45.455 0.00 0.00 43.62 4.06
2522 2658 1.072266 ATATCCGGGGCCAAAGCATA 58.928 50.000 4.39 0.00 42.56 3.14
2551 2687 3.367646 TTTTCAACCACCCACAGTACA 57.632 42.857 0.00 0.00 0.00 2.90
2632 2809 3.062122 TCGGCTTACCCAAAAAGGTAG 57.938 47.619 0.00 0.00 43.24 3.18
2640 2817 2.419574 GCTGAGTAATCGGCTTACCCAA 60.420 50.000 16.53 0.00 40.60 4.12
2644 2821 3.307242 CAGTTGCTGAGTAATCGGCTTAC 59.693 47.826 23.25 19.55 42.22 2.34
2659 2836 6.112734 TGAATACGAAATGTATCCAGTTGCT 58.887 36.000 0.00 0.00 43.04 3.91
2677 2854 9.220767 AGAAAAAGGTTCAGTGACTATGAATAC 57.779 33.333 0.00 0.00 38.81 1.89
2696 2873 2.415090 CCTGCGCCATCAGAAGAAAAAG 60.415 50.000 4.18 0.00 36.19 2.27
2847 3026 0.175760 GCTCGCCTGTTCTATGACCA 59.824 55.000 0.00 0.00 0.00 4.02
2927 3106 2.159198 GCACCACTGCTTGATAATTGGG 60.159 50.000 0.00 0.00 40.63 4.12
2989 3168 1.550869 CCCAGCCATTTGAGGGTTTCT 60.551 52.381 0.00 0.00 37.26 2.52
3296 3475 5.684704 TGACTGGAGATGGTTCCATAAATC 58.315 41.667 4.18 3.99 45.80 2.17
3413 3599 8.806429 TCCTCATCATCACTATCTATCTTCTC 57.194 38.462 0.00 0.00 0.00 2.87
3460 3646 2.106857 ACTTTGTCCCATACGGTTTCCA 59.893 45.455 0.00 0.00 0.00 3.53
3507 3693 0.461339 ACTCTGAACGCAAACGGTGT 60.461 50.000 0.00 0.00 41.26 4.16
3518 3704 3.056536 TCCATGCAGTGAGTACTCTGAAC 60.057 47.826 23.01 13.27 39.18 3.18
3643 3840 1.411246 GATGTGCAATGTCATGGGCAT 59.589 47.619 13.65 4.52 38.68 4.40
3644 3841 0.818938 GATGTGCAATGTCATGGGCA 59.181 50.000 8.03 8.03 0.00 5.36
3645 3842 0.818938 TGATGTGCAATGTCATGGGC 59.181 50.000 0.00 3.39 0.00 5.36
3646 3843 2.097036 ACTGATGTGCAATGTCATGGG 58.903 47.619 0.00 0.00 0.00 4.00
3647 3844 3.861276 AACTGATGTGCAATGTCATGG 57.139 42.857 0.00 0.00 0.00 3.66
3648 3845 5.464057 ACAAAAACTGATGTGCAATGTCATG 59.536 36.000 0.00 0.00 0.00 3.07
3649 3846 5.464057 CACAAAAACTGATGTGCAATGTCAT 59.536 36.000 0.00 0.00 40.32 3.06
3650 3847 4.804665 CACAAAAACTGATGTGCAATGTCA 59.195 37.500 0.00 0.00 40.32 3.58
3668 3865 4.776349 TGGTCTAACTCTTTGCTCACAAA 58.224 39.130 0.00 0.00 43.45 2.83
3669 3866 4.415881 TGGTCTAACTCTTTGCTCACAA 57.584 40.909 0.00 0.00 0.00 3.33
3778 4011 4.800471 CCTGCAGTTCTCTGTTTCAAAAAC 59.200 41.667 13.81 0.00 43.05 2.43
3823 4056 5.304357 TCCTCATCTCTCACTTGTACAAACA 59.696 40.000 10.03 0.00 0.00 2.83
3824 4057 5.784177 TCCTCATCTCTCACTTGTACAAAC 58.216 41.667 10.03 0.00 0.00 2.93
3866 4099 2.998670 CTCTCAGCTCGAAAGATTGCAA 59.001 45.455 0.00 0.00 40.84 4.08
3869 4102 3.516981 TCCTCTCAGCTCGAAAGATTG 57.483 47.619 0.00 0.00 40.84 2.67
3870 4103 4.751767 AATCCTCTCAGCTCGAAAGATT 57.248 40.909 0.00 0.00 40.84 2.40
3871 4104 5.127845 TGTTAATCCTCTCAGCTCGAAAGAT 59.872 40.000 0.00 0.00 40.84 2.40
3872 4105 4.462834 TGTTAATCCTCTCAGCTCGAAAGA 59.537 41.667 0.00 0.00 39.12 2.52
3873 4106 4.748892 TGTTAATCCTCTCAGCTCGAAAG 58.251 43.478 0.00 0.00 0.00 2.62
3874 4107 4.801330 TGTTAATCCTCTCAGCTCGAAA 57.199 40.909 0.00 0.00 0.00 3.46
3875 4108 4.160439 ACATGTTAATCCTCTCAGCTCGAA 59.840 41.667 0.00 0.00 0.00 3.71
3876 4109 3.701542 ACATGTTAATCCTCTCAGCTCGA 59.298 43.478 0.00 0.00 0.00 4.04
3878 4111 5.181748 ACAACATGTTAATCCTCTCAGCTC 58.818 41.667 11.53 0.00 0.00 4.09
3879 4112 5.171339 ACAACATGTTAATCCTCTCAGCT 57.829 39.130 11.53 0.00 0.00 4.24
3920 4167 7.489757 GTCAGGTTCTCTCTGATAACAACATAC 59.510 40.741 0.00 0.00 42.36 2.39
3953 4707 8.177456 AGAGGGTACAGGTATACATGATGATAA 58.823 37.037 23.38 0.00 0.00 1.75
3974 4753 2.795231 ACATGTCAATCCACAGAGGG 57.205 50.000 0.00 0.00 38.24 4.30
4015 4794 2.910688 ACGGGCTAATGTCAGGTATG 57.089 50.000 0.00 0.00 0.00 2.39
4019 4798 1.656652 CAGAACGGGCTAATGTCAGG 58.343 55.000 0.00 0.00 0.00 3.86
4026 4853 2.303600 ACATACAACCAGAACGGGCTAA 59.696 45.455 0.00 0.00 40.22 3.09
4070 4941 3.612423 GCAACAAAGAACAACTCCAACAC 59.388 43.478 0.00 0.00 0.00 3.32
4076 4947 4.736793 CAGACATGCAACAAAGAACAACTC 59.263 41.667 0.00 0.00 0.00 3.01
4203 5088 5.825679 ACAAGTGTTGTGCTTAGGTTGATAA 59.174 36.000 0.00 0.00 43.48 1.75
4207 5092 4.370364 AACAAGTGTTGTGCTTAGGTTG 57.630 40.909 0.00 0.00 44.59 3.77
4209 5094 5.190677 AGTAAACAAGTGTTGTGCTTAGGT 58.809 37.500 0.00 0.00 44.59 3.08
4211 5096 5.527582 AGGAGTAAACAAGTGTTGTGCTTAG 59.472 40.000 0.00 0.00 44.59 2.18
4212 5097 5.433526 AGGAGTAAACAAGTGTTGTGCTTA 58.566 37.500 0.00 0.00 44.59 3.09
4213 5098 4.270008 AGGAGTAAACAAGTGTTGTGCTT 58.730 39.130 0.00 0.00 44.59 3.91
4214 5099 3.877508 GAGGAGTAAACAAGTGTTGTGCT 59.122 43.478 0.00 0.00 44.59 4.40
4215 5100 3.877508 AGAGGAGTAAACAAGTGTTGTGC 59.122 43.478 0.00 0.00 44.59 4.57
4216 5101 4.876107 ACAGAGGAGTAAACAAGTGTTGTG 59.124 41.667 0.00 0.00 44.59 3.33
4218 5103 5.006746 GTGACAGAGGAGTAAACAAGTGTTG 59.993 44.000 0.00 0.00 38.44 3.33
4219 5104 5.116882 GTGACAGAGGAGTAAACAAGTGTT 58.883 41.667 0.00 0.00 40.50 3.32
4221 5106 4.508124 GTGTGACAGAGGAGTAAACAAGTG 59.492 45.833 0.00 0.00 0.00 3.16
4223 5108 4.693283 TGTGTGACAGAGGAGTAAACAAG 58.307 43.478 0.00 0.00 0.00 3.16
4224 5109 4.746535 TGTGTGACAGAGGAGTAAACAA 57.253 40.909 0.00 0.00 0.00 2.83
4226 5111 6.147328 GGTTAATGTGTGACAGAGGAGTAAAC 59.853 42.308 0.00 0.00 0.00 2.01
4244 5136 6.935741 TTCCCATTTATCTGTCGGTTAATG 57.064 37.500 0.00 0.00 0.00 1.90
4273 5165 7.230747 AGTACATCAGATCAGACTATGCTACT 58.769 38.462 0.00 0.00 0.00 2.57
4274 5166 7.447374 AGTACATCAGATCAGACTATGCTAC 57.553 40.000 0.00 0.00 0.00 3.58
4314 5211 9.657419 CTAATGCCCAAAATTCAAAGAGTTTAT 57.343 29.630 0.00 0.00 0.00 1.40
4315 5212 7.602265 GCTAATGCCCAAAATTCAAAGAGTTTA 59.398 33.333 0.00 0.00 0.00 2.01
4316 5213 6.427853 GCTAATGCCCAAAATTCAAAGAGTTT 59.572 34.615 0.00 0.00 0.00 2.66
4317 5214 5.934043 GCTAATGCCCAAAATTCAAAGAGTT 59.066 36.000 0.00 0.00 0.00 3.01
4318 5215 5.246883 AGCTAATGCCCAAAATTCAAAGAGT 59.753 36.000 0.00 0.00 40.80 3.24
4319 5216 5.727434 AGCTAATGCCCAAAATTCAAAGAG 58.273 37.500 0.00 0.00 40.80 2.85
4320 5217 5.743636 AGCTAATGCCCAAAATTCAAAGA 57.256 34.783 0.00 0.00 40.80 2.52
4321 5218 6.348704 CCAAAGCTAATGCCCAAAATTCAAAG 60.349 38.462 0.00 0.00 40.80 2.77
4332 5229 0.532115 CACCACCAAAGCTAATGCCC 59.468 55.000 0.00 0.00 40.80 5.36
4356 5253 2.184830 CAGCACAGCACAGCACAGT 61.185 57.895 0.00 0.00 0.00 3.55
4404 5301 1.728426 CAAAGCAGCAGCAAGACGC 60.728 57.895 3.17 0.00 45.49 5.19
4421 5318 1.093972 CATAAACATGGCCAGTCGCA 58.906 50.000 13.05 0.00 40.31 5.10
4422 5319 1.094785 ACATAAACATGGCCAGTCGC 58.905 50.000 13.05 0.00 0.00 5.19
4423 5320 3.057596 ACAAACATAAACATGGCCAGTCG 60.058 43.478 13.05 4.61 0.00 4.18
4424 5321 4.519540 ACAAACATAAACATGGCCAGTC 57.480 40.909 13.05 0.00 0.00 3.51
4425 5322 5.048083 CACTACAAACATAAACATGGCCAGT 60.048 40.000 13.05 6.82 0.00 4.00
4426 5323 5.048083 ACACTACAAACATAAACATGGCCAG 60.048 40.000 13.05 6.08 0.00 4.85
4427 5324 4.830046 ACACTACAAACATAAACATGGCCA 59.170 37.500 8.56 8.56 0.00 5.36
4428 5325 5.385509 ACACTACAAACATAAACATGGCC 57.614 39.130 0.00 0.00 0.00 5.36
4439 5336 9.562408 TCAGATTTGGTTATTACACTACAAACA 57.438 29.630 0.00 0.00 31.61 2.83
4442 5339 9.653287 CTCTCAGATTTGGTTATTACACTACAA 57.347 33.333 0.00 0.00 0.00 2.41
4443 5340 7.764443 GCTCTCAGATTTGGTTATTACACTACA 59.236 37.037 0.00 0.00 0.00 2.74
4444 5341 7.982354 AGCTCTCAGATTTGGTTATTACACTAC 59.018 37.037 0.00 0.00 0.00 2.73
4445 5342 7.981789 CAGCTCTCAGATTTGGTTATTACACTA 59.018 37.037 0.00 0.00 0.00 2.74
4446 5343 6.820656 CAGCTCTCAGATTTGGTTATTACACT 59.179 38.462 0.00 0.00 0.00 3.55
4447 5344 6.457528 GCAGCTCTCAGATTTGGTTATTACAC 60.458 42.308 0.00 0.00 0.00 2.90
4448 5345 5.586243 GCAGCTCTCAGATTTGGTTATTACA 59.414 40.000 0.00 0.00 0.00 2.41
4449 5346 5.586243 TGCAGCTCTCAGATTTGGTTATTAC 59.414 40.000 0.00 0.00 0.00 1.89
4450 5347 5.744171 TGCAGCTCTCAGATTTGGTTATTA 58.256 37.500 0.00 0.00 0.00 0.98
4451 5348 4.592942 TGCAGCTCTCAGATTTGGTTATT 58.407 39.130 0.00 0.00 0.00 1.40
4452 5349 4.226427 TGCAGCTCTCAGATTTGGTTAT 57.774 40.909 0.00 0.00 0.00 1.89
4453 5350 3.701205 TGCAGCTCTCAGATTTGGTTA 57.299 42.857 0.00 0.00 0.00 2.85
4454 5351 2.555757 GTTGCAGCTCTCAGATTTGGTT 59.444 45.455 0.00 0.00 0.00 3.67
4455 5352 2.157738 GTTGCAGCTCTCAGATTTGGT 58.842 47.619 0.00 0.00 0.00 3.67
4456 5353 2.161808 CAGTTGCAGCTCTCAGATTTGG 59.838 50.000 0.00 0.00 0.00 3.28
4457 5354 2.812591 ACAGTTGCAGCTCTCAGATTTG 59.187 45.455 0.00 0.00 0.00 2.32
4458 5355 3.137446 ACAGTTGCAGCTCTCAGATTT 57.863 42.857 0.00 0.00 0.00 2.17
4459 5356 2.855209 ACAGTTGCAGCTCTCAGATT 57.145 45.000 0.00 0.00 0.00 2.40
4460 5357 3.969287 TTACAGTTGCAGCTCTCAGAT 57.031 42.857 0.00 0.00 0.00 2.90
4461 5358 3.070159 AGTTTACAGTTGCAGCTCTCAGA 59.930 43.478 0.00 0.00 0.00 3.27
4462 5359 3.397482 AGTTTACAGTTGCAGCTCTCAG 58.603 45.455 0.00 0.00 0.00 3.35
4463 5360 3.475566 AGTTTACAGTTGCAGCTCTCA 57.524 42.857 0.00 0.00 0.00 3.27
4464 5361 3.369451 GCTAGTTTACAGTTGCAGCTCTC 59.631 47.826 0.00 0.00 0.00 3.20
4465 5362 3.007398 AGCTAGTTTACAGTTGCAGCTCT 59.993 43.478 0.00 0.00 32.66 4.09
4466 5363 3.330267 AGCTAGTTTACAGTTGCAGCTC 58.670 45.455 0.00 0.00 32.66 4.09
4467 5364 3.409026 AGCTAGTTTACAGTTGCAGCT 57.591 42.857 0.00 0.00 33.23 4.24
4468 5365 3.251004 ACAAGCTAGTTTACAGTTGCAGC 59.749 43.478 0.00 0.00 0.00 5.25
4469 5366 4.319766 CCACAAGCTAGTTTACAGTTGCAG 60.320 45.833 0.00 0.00 0.00 4.41
4470 5367 3.563808 CCACAAGCTAGTTTACAGTTGCA 59.436 43.478 0.00 0.00 0.00 4.08
4471 5368 3.609409 GCCACAAGCTAGTTTACAGTTGC 60.609 47.826 0.00 0.00 38.99 4.17
4472 5369 4.147219 GCCACAAGCTAGTTTACAGTTG 57.853 45.455 0.00 0.00 38.99 3.16
4485 5382 0.877213 CAAAGCCACAAGCCACAAGC 60.877 55.000 0.00 0.00 45.47 4.01
4486 5383 0.746063 TCAAAGCCACAAGCCACAAG 59.254 50.000 0.00 0.00 45.47 3.16
4487 5384 1.189752 TTCAAAGCCACAAGCCACAA 58.810 45.000 0.00 0.00 45.47 3.33
4488 5385 1.189752 TTTCAAAGCCACAAGCCACA 58.810 45.000 0.00 0.00 45.47 4.17
4489 5386 2.036346 AGATTTCAAAGCCACAAGCCAC 59.964 45.455 0.00 0.00 45.47 5.01
4490 5387 2.036217 CAGATTTCAAAGCCACAAGCCA 59.964 45.455 0.00 0.00 45.47 4.75
4491 5388 2.680577 CAGATTTCAAAGCCACAAGCC 58.319 47.619 0.00 0.00 45.47 4.35
4492 5389 2.064014 GCAGATTTCAAAGCCACAAGC 58.936 47.619 0.00 0.00 44.25 4.01
4493 5390 3.243636 ACTGCAGATTTCAAAGCCACAAG 60.244 43.478 23.35 0.00 0.00 3.16
4494 5391 2.694628 ACTGCAGATTTCAAAGCCACAA 59.305 40.909 23.35 0.00 0.00 3.33
4495 5392 2.294233 GACTGCAGATTTCAAAGCCACA 59.706 45.455 23.35 0.00 0.00 4.17
4496 5393 2.555757 AGACTGCAGATTTCAAAGCCAC 59.444 45.455 23.35 0.00 0.00 5.01
4497 5394 2.867624 AGACTGCAGATTTCAAAGCCA 58.132 42.857 23.35 0.00 0.00 4.75
4498 5395 3.005155 ACAAGACTGCAGATTTCAAAGCC 59.995 43.478 23.35 0.00 0.00 4.35
4499 5396 4.225208 GACAAGACTGCAGATTTCAAAGC 58.775 43.478 23.35 0.00 0.00 3.51
4500 5397 5.008415 ACTGACAAGACTGCAGATTTCAAAG 59.992 40.000 23.35 12.26 33.51 2.77
4501 5398 4.883585 ACTGACAAGACTGCAGATTTCAAA 59.116 37.500 23.35 0.00 33.51 2.69
4502 5399 4.274214 CACTGACAAGACTGCAGATTTCAA 59.726 41.667 23.35 0.00 33.51 2.69
4503 5400 3.811497 CACTGACAAGACTGCAGATTTCA 59.189 43.478 23.35 16.87 33.51 2.69
4504 5401 3.812053 ACACTGACAAGACTGCAGATTTC 59.188 43.478 23.35 7.82 33.51 2.17
4505 5402 3.562973 CACACTGACAAGACTGCAGATTT 59.437 43.478 23.35 11.15 33.51 2.17
4506 5403 3.136763 CACACTGACAAGACTGCAGATT 58.863 45.455 23.35 11.96 33.51 2.40
4507 5404 2.549563 CCACACTGACAAGACTGCAGAT 60.550 50.000 23.35 5.42 33.51 2.90
4508 5405 1.202568 CCACACTGACAAGACTGCAGA 60.203 52.381 23.35 0.00 33.51 4.26
4509 5406 1.224075 CCACACTGACAAGACTGCAG 58.776 55.000 13.48 13.48 34.67 4.41
4510 5407 0.541392 ACCACACTGACAAGACTGCA 59.459 50.000 0.00 0.00 0.00 4.41
4511 5408 1.668419 AACCACACTGACAAGACTGC 58.332 50.000 0.00 0.00 0.00 4.40
4512 5409 3.270027 TGAAACCACACTGACAAGACTG 58.730 45.455 0.00 0.00 0.00 3.51
4513 5410 3.627395 TGAAACCACACTGACAAGACT 57.373 42.857 0.00 0.00 0.00 3.24
4514 5411 4.900635 AATGAAACCACACTGACAAGAC 57.099 40.909 0.00 0.00 0.00 3.01
4515 5412 5.184864 ACAAAATGAAACCACACTGACAAGA 59.815 36.000 0.00 0.00 0.00 3.02
4516 5413 5.410067 ACAAAATGAAACCACACTGACAAG 58.590 37.500 0.00 0.00 0.00 3.16
4517 5414 5.398603 ACAAAATGAAACCACACTGACAA 57.601 34.783 0.00 0.00 0.00 3.18
4518 5415 5.167121 CAACAAAATGAAACCACACTGACA 58.833 37.500 0.00 0.00 0.00 3.58
4519 5416 4.032786 GCAACAAAATGAAACCACACTGAC 59.967 41.667 0.00 0.00 0.00 3.51
4520 5417 4.081752 AGCAACAAAATGAAACCACACTGA 60.082 37.500 0.00 0.00 0.00 3.41
4521 5418 4.033129 CAGCAACAAAATGAAACCACACTG 59.967 41.667 0.00 0.00 0.00 3.66
4522 5419 4.183101 CAGCAACAAAATGAAACCACACT 58.817 39.130 0.00 0.00 0.00 3.55
4523 5420 3.242381 GCAGCAACAAAATGAAACCACAC 60.242 43.478 0.00 0.00 0.00 3.82
4524 5421 2.935201 GCAGCAACAAAATGAAACCACA 59.065 40.909 0.00 0.00 0.00 4.17
4525 5422 2.935201 TGCAGCAACAAAATGAAACCAC 59.065 40.909 0.00 0.00 0.00 4.16
4526 5423 3.257469 TGCAGCAACAAAATGAAACCA 57.743 38.095 0.00 0.00 0.00 3.67
4527 5424 4.035441 ACAATGCAGCAACAAAATGAAACC 59.965 37.500 0.00 0.00 0.00 3.27
4528 5425 5.159399 ACAATGCAGCAACAAAATGAAAC 57.841 34.783 0.00 0.00 0.00 2.78
4529 5426 5.051173 CGTACAATGCAGCAACAAAATGAAA 60.051 36.000 0.00 0.00 0.00 2.69
4530 5427 4.443725 CGTACAATGCAGCAACAAAATGAA 59.556 37.500 0.00 0.00 0.00 2.57
4531 5428 3.980134 CGTACAATGCAGCAACAAAATGA 59.020 39.130 0.00 0.00 0.00 2.57
4532 5429 3.422085 GCGTACAATGCAGCAACAAAATG 60.422 43.478 0.00 0.00 0.00 2.32
4533 5430 2.730928 GCGTACAATGCAGCAACAAAAT 59.269 40.909 0.00 0.00 0.00 1.82
4534 5431 2.123342 GCGTACAATGCAGCAACAAAA 58.877 42.857 0.00 0.00 0.00 2.44
4535 5432 1.066152 TGCGTACAATGCAGCAACAAA 59.934 42.857 0.00 0.00 34.76 2.83
4536 5433 0.665298 TGCGTACAATGCAGCAACAA 59.335 45.000 0.00 0.00 34.76 2.83
4537 5434 0.880441 ATGCGTACAATGCAGCAACA 59.120 45.000 0.00 0.00 44.19 3.33
4538 5435 3.700577 ATGCGTACAATGCAGCAAC 57.299 47.368 0.00 0.00 44.19 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.