Multiple sequence alignment - TraesCS2B01G022800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G022800 chr2B 100.000 3083 0 0 1 3083 10787170 10784088 0.000000e+00 5694.0
1 TraesCS2B01G022800 chr2D 93.338 1501 61 15 954 2447 674071 675539 0.000000e+00 2182.0
2 TraesCS2B01G022800 chr2D 85.898 1397 143 39 954 2323 648746945 648748314 0.000000e+00 1439.0
3 TraesCS2B01G022800 chr2D 95.714 280 10 1 2806 3083 675934 676213 1.690000e-122 449.0
4 TraesCS2B01G022800 chr2D 92.748 262 16 3 2449 2708 675570 675830 2.900000e-100 375.0
5 TraesCS2B01G022800 chr2D 93.464 153 10 0 474 626 673365 673517 8.600000e-56 228.0
6 TraesCS2B01G022800 chr2D 97.674 129 3 0 634 762 673752 673880 4.000000e-54 222.0
7 TraesCS2B01G022800 chr2D 92.073 164 4 3 796 959 673880 674034 4.000000e-54 222.0
8 TraesCS2B01G022800 chr2A 87.555 1591 115 40 1368 2916 527722 529271 0.000000e+00 1764.0
9 TraesCS2B01G022800 chr2A 94.033 486 27 2 954 1438 527238 527722 0.000000e+00 736.0
10 TraesCS2B01G022800 chr2A 91.940 335 15 4 633 959 526871 527201 2.800000e-125 459.0
11 TraesCS2B01G022800 chr2A 94.681 188 5 2 2898 3083 529288 529472 1.400000e-73 287.0
12 TraesCS2B01G022800 chr2A 88.387 155 7 6 470 614 526469 526622 3.160000e-40 176.0
13 TraesCS2B01G022800 chr2A 97.500 40 1 0 1 40 525645 525684 5.520000e-08 69.4
14 TraesCS2B01G022800 chr5A 88.144 835 69 17 954 1764 219451936 219451108 0.000000e+00 966.0
15 TraesCS2B01G022800 chr3D 85.414 857 61 30 954 1782 462477335 462476515 0.000000e+00 832.0
16 TraesCS2B01G022800 chr4D 86.008 243 17 9 345 586 182204448 182204674 8.540000e-61 244.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G022800 chr2B 10784088 10787170 3082 True 5694.0 5694 100.000000 1 3083 1 chr2B.!!$R1 3082
1 TraesCS2B01G022800 chr2D 648746945 648748314 1369 False 1439.0 1439 85.898000 954 2323 1 chr2D.!!$F1 1369
2 TraesCS2B01G022800 chr2D 673365 676213 2848 False 613.0 2182 94.168500 474 3083 6 chr2D.!!$F2 2609
3 TraesCS2B01G022800 chr2A 525645 529472 3827 False 581.9 1764 92.349333 1 3083 6 chr2A.!!$F1 3082
4 TraesCS2B01G022800 chr5A 219451108 219451936 828 True 966.0 966 88.144000 954 1764 1 chr5A.!!$R1 810
5 TraesCS2B01G022800 chr3D 462476515 462477335 820 True 832.0 832 85.414000 954 1782 1 chr3D.!!$R1 828

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.096454 GATCGGCGTACCTTTGTTGC 59.904 55.0 6.85 0.0 0.0 4.17 F
158 180 0.120377 TTCCCCCTCCCTCTGCTTAA 59.880 55.0 0.00 0.0 0.0 1.85 F
1764 2582 0.399949 TCGGATGGGGCCTACAGATT 60.400 55.0 0.84 0.0 0.0 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1779 2597 1.519751 CGCCCATCGAGTAGAGGAGG 61.520 65.000 0.0 0.0 41.67 4.30 R
1884 2703 2.034305 CACGTAGTATGAGTAGGCCCAC 59.966 54.545 0.0 0.0 41.61 4.61 R
2726 3608 2.023673 TGTGTTCTCAACAAAGCTGGG 58.976 47.619 0.0 0.0 44.16 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.935873 TGTTACCTACCTCGTCGATCG 59.064 52.381 9.36 9.36 41.41 3.69
44 45 1.281960 CGATCGATCGGCGTACCTT 59.718 57.895 34.54 0.00 45.93 3.50
46 47 1.129326 GATCGATCGGCGTACCTTTG 58.871 55.000 16.41 0.00 41.80 2.77
47 48 0.458669 ATCGATCGGCGTACCTTTGT 59.541 50.000 16.41 0.00 41.80 2.83
49 50 0.368907 CGATCGGCGTACCTTTGTTG 59.631 55.000 7.38 0.00 34.64 3.33
50 51 0.096454 GATCGGCGTACCTTTGTTGC 59.904 55.000 6.85 0.00 0.00 4.17
51 52 0.604243 ATCGGCGTACCTTTGTTGCA 60.604 50.000 6.85 0.00 0.00 4.08
52 53 1.082366 CGGCGTACCTTTGTTGCAC 60.082 57.895 0.00 0.00 0.00 4.57
55 56 0.383860 GCGTACCTTTGTTGCACGAC 60.384 55.000 0.00 0.00 34.66 4.34
77 99 3.610114 CGCGATTGGATTGGATTGGATTC 60.610 47.826 0.00 0.00 0.00 2.52
88 110 5.772825 TGGATTGGATTCGATTGGATTTC 57.227 39.130 0.00 0.00 0.00 2.17
94 116 4.202419 TGGATTCGATTGGATTTCGGGTAT 60.202 41.667 0.00 0.00 37.22 2.73
95 117 4.760204 GGATTCGATTGGATTTCGGGTATT 59.240 41.667 0.00 0.00 37.22 1.89
97 119 5.744666 TTCGATTGGATTTCGGGTATTTC 57.255 39.130 0.00 0.00 37.22 2.17
101 123 6.037830 TCGATTGGATTTCGGGTATTTCTTTC 59.962 38.462 0.00 0.00 37.22 2.62
102 124 5.907866 TTGGATTTCGGGTATTTCTTTCC 57.092 39.130 0.00 0.00 0.00 3.13
105 127 5.417580 TGGATTTCGGGTATTTCTTTCCTTG 59.582 40.000 0.00 0.00 0.00 3.61
106 128 5.417894 GGATTTCGGGTATTTCTTTCCTTGT 59.582 40.000 0.00 0.00 0.00 3.16
108 130 7.121611 GGATTTCGGGTATTTCTTTCCTTGTTA 59.878 37.037 0.00 0.00 0.00 2.41
109 131 7.443259 TTTCGGGTATTTCTTTCCTTGTTAG 57.557 36.000 0.00 0.00 0.00 2.34
110 132 6.117975 TCGGGTATTTCTTTCCTTGTTAGT 57.882 37.500 0.00 0.00 0.00 2.24
111 133 6.536447 TCGGGTATTTCTTTCCTTGTTAGTT 58.464 36.000 0.00 0.00 0.00 2.24
115 137 7.303261 GGTATTTCTTTCCTTGTTAGTTTCGG 58.697 38.462 0.00 0.00 0.00 4.30
138 160 5.915196 GGTCCACGATTCTTTCTTTTCTTTG 59.085 40.000 0.00 0.00 0.00 2.77
140 162 6.972901 GTCCACGATTCTTTCTTTTCTTTGTT 59.027 34.615 0.00 0.00 0.00 2.83
141 163 7.165977 GTCCACGATTCTTTCTTTTCTTTGTTC 59.834 37.037 0.00 0.00 0.00 3.18
142 164 6.417930 CCACGATTCTTTCTTTTCTTTGTTCC 59.582 38.462 0.00 0.00 0.00 3.62
143 165 6.417930 CACGATTCTTTCTTTTCTTTGTTCCC 59.582 38.462 0.00 0.00 0.00 3.97
144 166 5.920840 CGATTCTTTCTTTTCTTTGTTCCCC 59.079 40.000 0.00 0.00 0.00 4.81
145 167 5.607939 TTCTTTCTTTTCTTTGTTCCCCC 57.392 39.130 0.00 0.00 0.00 5.40
146 168 4.878968 TCTTTCTTTTCTTTGTTCCCCCT 58.121 39.130 0.00 0.00 0.00 4.79
147 169 4.893524 TCTTTCTTTTCTTTGTTCCCCCTC 59.106 41.667 0.00 0.00 0.00 4.30
148 170 3.238788 TCTTTTCTTTGTTCCCCCTCC 57.761 47.619 0.00 0.00 0.00 4.30
149 171 2.158370 TCTTTTCTTTGTTCCCCCTCCC 60.158 50.000 0.00 0.00 0.00 4.30
151 173 1.073098 TTCTTTGTTCCCCCTCCCTC 58.927 55.000 0.00 0.00 0.00 4.30
152 174 0.196118 TCTTTGTTCCCCCTCCCTCT 59.804 55.000 0.00 0.00 0.00 3.69
154 176 1.789576 TTTGTTCCCCCTCCCTCTGC 61.790 60.000 0.00 0.00 0.00 4.26
155 177 2.285743 GTTCCCCCTCCCTCTGCT 60.286 66.667 0.00 0.00 0.00 4.24
157 179 0.620700 GTTCCCCCTCCCTCTGCTTA 60.621 60.000 0.00 0.00 0.00 3.09
158 180 0.120377 TTCCCCCTCCCTCTGCTTAA 59.880 55.000 0.00 0.00 0.00 1.85
159 181 0.620700 TCCCCCTCCCTCTGCTTAAC 60.621 60.000 0.00 0.00 0.00 2.01
160 182 1.636769 CCCCCTCCCTCTGCTTAACC 61.637 65.000 0.00 0.00 0.00 2.85
161 183 0.914417 CCCCTCCCTCTGCTTAACCA 60.914 60.000 0.00 0.00 0.00 3.67
171 202 8.506196 TCCCTCTGCTTAACCAGTATTATTAT 57.494 34.615 0.00 0.00 34.47 1.28
172 203 8.945193 TCCCTCTGCTTAACCAGTATTATTATT 58.055 33.333 0.00 0.00 34.47 1.40
202 233 6.347859 ACTATTACTATTAGTGCCTCTGCC 57.652 41.667 6.60 0.00 36.33 4.85
203 234 6.078664 ACTATTACTATTAGTGCCTCTGCCT 58.921 40.000 6.60 0.00 36.33 4.75
204 235 4.672587 TTACTATTAGTGCCTCTGCCTG 57.327 45.455 6.60 0.00 36.33 4.85
205 236 2.472029 ACTATTAGTGCCTCTGCCTGT 58.528 47.619 0.00 0.00 36.33 4.00
217 248 3.260884 CCTCTGCCTGTCTTGTTAGGTTA 59.739 47.826 0.00 0.00 36.44 2.85
219 250 3.260884 TCTGCCTGTCTTGTTAGGTTAGG 59.739 47.826 0.00 0.00 36.44 2.69
221 252 3.393278 TGCCTGTCTTGTTAGGTTAGGTT 59.607 43.478 0.00 0.00 36.44 3.50
222 253 4.594062 TGCCTGTCTTGTTAGGTTAGGTTA 59.406 41.667 0.00 0.00 36.44 2.85
223 254 5.176592 GCCTGTCTTGTTAGGTTAGGTTAG 58.823 45.833 0.00 0.00 36.44 2.34
224 255 5.731591 CCTGTCTTGTTAGGTTAGGTTAGG 58.268 45.833 0.00 0.00 0.00 2.69
225 256 5.247792 CCTGTCTTGTTAGGTTAGGTTAGGT 59.752 44.000 0.00 0.00 0.00 3.08
226 257 6.239800 CCTGTCTTGTTAGGTTAGGTTAGGTT 60.240 42.308 0.00 0.00 0.00 3.50
227 258 7.038799 CCTGTCTTGTTAGGTTAGGTTAGGTTA 60.039 40.741 0.00 0.00 0.00 2.85
228 259 7.899973 TGTCTTGTTAGGTTAGGTTAGGTTAG 58.100 38.462 0.00 0.00 0.00 2.34
229 260 7.038799 TGTCTTGTTAGGTTAGGTTAGGTTAGG 60.039 40.741 0.00 0.00 0.00 2.69
230 261 7.018769 TCTTGTTAGGTTAGGTTAGGTTAGGT 58.981 38.462 0.00 0.00 0.00 3.08
231 262 7.513781 TCTTGTTAGGTTAGGTTAGGTTAGGTT 59.486 37.037 0.00 0.00 0.00 3.50
232 263 7.008021 TGTTAGGTTAGGTTAGGTTAGGTTG 57.992 40.000 0.00 0.00 0.00 3.77
252 283 1.681166 GGATCCAATCTGCTGCACACT 60.681 52.381 6.95 0.00 0.00 3.55
253 284 2.089980 GATCCAATCTGCTGCACACTT 58.910 47.619 0.00 0.00 0.00 3.16
254 285 1.985473 TCCAATCTGCTGCACACTTT 58.015 45.000 0.00 0.00 0.00 2.66
255 286 3.138884 TCCAATCTGCTGCACACTTTA 57.861 42.857 0.00 0.00 0.00 1.85
256 287 3.689347 TCCAATCTGCTGCACACTTTAT 58.311 40.909 0.00 0.00 0.00 1.40
257 288 4.081406 TCCAATCTGCTGCACACTTTATT 58.919 39.130 0.00 0.00 0.00 1.40
291 322 5.704978 ACAGATTTTGCCTCTTCTTCTTCTC 59.295 40.000 0.00 0.00 0.00 2.87
292 323 5.939296 CAGATTTTGCCTCTTCTTCTTCTCT 59.061 40.000 0.00 0.00 0.00 3.10
296 327 4.799564 TGCCTCTTCTTCTTCTCTTCTC 57.200 45.455 0.00 0.00 0.00 2.87
297 328 4.415596 TGCCTCTTCTTCTTCTCTTCTCT 58.584 43.478 0.00 0.00 0.00 3.10
298 329 4.837860 TGCCTCTTCTTCTTCTCTTCTCTT 59.162 41.667 0.00 0.00 0.00 2.85
299 330 5.047377 TGCCTCTTCTTCTTCTCTTCTCTTC 60.047 44.000 0.00 0.00 0.00 2.87
300 331 5.185828 GCCTCTTCTTCTTCTCTTCTCTTCT 59.814 44.000 0.00 0.00 0.00 2.85
301 332 6.625960 GCCTCTTCTTCTTCTCTTCTCTTCTC 60.626 46.154 0.00 0.00 0.00 2.87
302 333 6.660949 CCTCTTCTTCTTCTCTTCTCTTCTCT 59.339 42.308 0.00 0.00 0.00 3.10
306 337 7.687941 TCTTCTTCTCTTCTCTTCTCTTCTC 57.312 40.000 0.00 0.00 0.00 2.87
323 354 4.712337 TCTTCTCTTCTAGCCGATTTCCTT 59.288 41.667 0.00 0.00 0.00 3.36
324 355 5.187967 TCTTCTCTTCTAGCCGATTTCCTTT 59.812 40.000 0.00 0.00 0.00 3.11
325 356 5.012328 TCTCTTCTAGCCGATTTCCTTTC 57.988 43.478 0.00 0.00 0.00 2.62
326 357 4.123506 CTCTTCTAGCCGATTTCCTTTCC 58.876 47.826 0.00 0.00 0.00 3.13
327 358 3.775316 TCTTCTAGCCGATTTCCTTTCCT 59.225 43.478 0.00 0.00 0.00 3.36
328 359 4.960469 TCTTCTAGCCGATTTCCTTTCCTA 59.040 41.667 0.00 0.00 0.00 2.94
329 360 4.667519 TCTAGCCGATTTCCTTTCCTAC 57.332 45.455 0.00 0.00 0.00 3.18
330 361 4.287552 TCTAGCCGATTTCCTTTCCTACT 58.712 43.478 0.00 0.00 0.00 2.57
331 362 3.268023 AGCCGATTTCCTTTCCTACTG 57.732 47.619 0.00 0.00 0.00 2.74
332 363 1.671328 GCCGATTTCCTTTCCTACTGC 59.329 52.381 0.00 0.00 0.00 4.40
333 364 2.289565 CCGATTTCCTTTCCTACTGCC 58.710 52.381 0.00 0.00 0.00 4.85
334 365 2.092914 CCGATTTCCTTTCCTACTGCCT 60.093 50.000 0.00 0.00 0.00 4.75
335 366 3.198872 CGATTTCCTTTCCTACTGCCTC 58.801 50.000 0.00 0.00 0.00 4.70
336 367 3.546724 GATTTCCTTTCCTACTGCCTCC 58.453 50.000 0.00 0.00 0.00 4.30
338 369 2.270434 TCCTTTCCTACTGCCTCCAT 57.730 50.000 0.00 0.00 0.00 3.41
339 370 1.839994 TCCTTTCCTACTGCCTCCATG 59.160 52.381 0.00 0.00 0.00 3.66
340 371 1.133976 CCTTTCCTACTGCCTCCATGG 60.134 57.143 4.97 4.97 39.35 3.66
341 372 1.839994 CTTTCCTACTGCCTCCATGGA 59.160 52.381 15.27 15.27 38.35 3.41
342 373 2.196742 TTCCTACTGCCTCCATGGAT 57.803 50.000 16.63 1.87 38.35 3.41
343 374 1.722034 TCCTACTGCCTCCATGGATC 58.278 55.000 16.63 10.95 38.35 3.36
344 375 1.062198 TCCTACTGCCTCCATGGATCA 60.062 52.381 16.63 15.03 38.35 2.92
345 376 1.071385 CCTACTGCCTCCATGGATCAC 59.929 57.143 16.63 8.36 38.35 3.06
346 377 1.764723 CTACTGCCTCCATGGATCACA 59.235 52.381 16.63 12.67 38.35 3.58
347 378 0.545171 ACTGCCTCCATGGATCACAG 59.455 55.000 25.82 25.82 38.35 3.66
349 380 0.915872 TGCCTCCATGGATCACAGGT 60.916 55.000 16.63 0.00 38.35 4.00
365 683 7.338449 GGATCACAGGTAGACTAGAGGATAATC 59.662 44.444 0.00 0.00 0.00 1.75
388 711 1.547372 CTTGCCCCTCTTGTTTCATGG 59.453 52.381 0.00 0.00 0.00 3.66
391 714 1.180029 CCCCTCTTGTTTCATGGCAG 58.820 55.000 0.00 0.00 0.00 4.85
397 720 4.083110 CCTCTTGTTTCATGGCAGTTACTG 60.083 45.833 8.18 8.18 34.12 2.74
400 723 4.085357 TGTTTCATGGCAGTTACTGACT 57.915 40.909 19.76 2.04 40.76 3.41
419 742 3.077359 ACTGAGGTGCTTGCAGAATTAC 58.923 45.455 0.00 0.00 33.94 1.89
431 754 8.996271 TGCTTGCAGAATTACATAGATATTCAG 58.004 33.333 0.00 0.00 32.11 3.02
446 772 6.051717 AGATATTCAGACTTGTACCATGTGC 58.948 40.000 0.00 0.00 0.00 4.57
537 951 5.846528 AGCTAGGCTAGGTGTACTACTAT 57.153 43.478 24.39 0.00 36.99 2.12
543 957 6.305411 AGGCTAGGTGTACTACTATAACTGG 58.695 44.000 0.00 0.00 0.00 4.00
564 978 4.202398 TGGCATCTAGGAATGATGGTTCTC 60.202 45.833 0.00 0.00 40.98 2.87
606 1020 4.026356 ACTCAACTGCTTGCTATTTCCT 57.974 40.909 0.00 0.00 0.00 3.36
621 1039 7.201145 TGCTATTTCCTCGTCTTTACTCATAC 58.799 38.462 0.00 0.00 0.00 2.39
626 1044 6.132791 TCCTCGTCTTTACTCATACACATC 57.867 41.667 0.00 0.00 0.00 3.06
627 1045 5.650703 TCCTCGTCTTTACTCATACACATCA 59.349 40.000 0.00 0.00 0.00 3.07
631 1049 9.516314 CTCGTCTTTACTCATACACATCAATAA 57.484 33.333 0.00 0.00 0.00 1.40
710 1372 8.991243 TCACTTGTTTACACTACATATGGTAC 57.009 34.615 7.80 0.00 0.00 3.34
791 1453 8.174733 AGGAATTATTTGAATGGCATGACTAG 57.825 34.615 0.00 0.00 0.00 2.57
792 1454 7.781693 AGGAATTATTTGAATGGCATGACTAGT 59.218 33.333 0.00 0.00 0.00 2.57
793 1455 9.066892 GGAATTATTTGAATGGCATGACTAGTA 57.933 33.333 0.00 0.00 0.00 1.82
805 1467 6.183360 TGGCATGACTAGTAGTGCTTAAGTAG 60.183 42.308 23.45 0.00 37.70 2.57
827 1489 1.940613 CGAAATTACTACCCTGCCTGC 59.059 52.381 0.00 0.00 0.00 4.85
910 1578 6.183360 ACGGTTGCACCTTATGTTATGTTATG 60.183 38.462 0.00 0.00 35.66 1.90
1080 1792 0.912486 AGCCTGGTCCCTATGACAAC 59.088 55.000 0.00 0.00 46.38 3.32
1144 1856 5.426325 AGGAGTATATGGGGAGAAGTTCT 57.574 43.478 4.68 4.68 0.00 3.01
1222 1958 1.501170 TCCCCCTGGTGTTTCAAATCA 59.499 47.619 0.00 0.00 0.00 2.57
1223 1959 2.111613 TCCCCCTGGTGTTTCAAATCAT 59.888 45.455 0.00 0.00 0.00 2.45
1409 2150 4.703897 ACACTGGATATGTATTGGGTTCG 58.296 43.478 0.00 0.00 0.00 3.95
1646 2464 2.501223 TTACCTTCTCCAGCCACGCG 62.501 60.000 3.53 3.53 0.00 6.01
1679 2497 2.963599 TCAAACCTGGGGTTCCTAAC 57.036 50.000 2.25 0.00 46.20 2.34
1764 2582 0.399949 TCGGATGGGGCCTACAGATT 60.400 55.000 0.84 0.00 0.00 2.40
1779 2597 6.403746 GCCTACAGATTGTCTTCTTAAAAGGC 60.404 42.308 0.00 0.00 0.00 4.35
2258 3100 3.795877 AGTTGTGAATTTTGCAGTTGGG 58.204 40.909 0.00 0.00 0.00 4.12
2402 3249 5.217978 ACTGGCATTGTTTGAATGTTCAT 57.782 34.783 0.00 0.00 37.00 2.57
2428 3275 9.613428 TTCAGTGAAAGTATATGGATTTTCGAT 57.387 29.630 2.20 0.00 33.40 3.59
2447 3294 3.728221 CGATGATAAAGACAGTCAGCTCG 59.272 47.826 2.66 0.00 0.00 5.03
2542 3421 8.432110 TTTTTGAACCTAAAAAGAGATTTGGC 57.568 30.769 0.00 0.00 35.32 4.52
2707 3589 4.442073 GCATTAGCAACAAGTGAACAAGTG 59.558 41.667 0.00 0.00 41.58 3.16
2709 3591 1.818060 AGCAACAAGTGAACAAGTGCA 59.182 42.857 0.00 0.00 0.00 4.57
2710 3592 2.230992 AGCAACAAGTGAACAAGTGCAA 59.769 40.909 0.00 0.00 0.00 4.08
2713 3595 4.434593 GCAACAAGTGAACAAGTGCAAAAG 60.435 41.667 0.00 0.00 0.00 2.27
2719 3601 4.937015 AGTGAACAAGTGCAAAAGCAAAAT 59.063 33.333 0.00 0.00 0.00 1.82
2721 3603 6.256321 AGTGAACAAGTGCAAAAGCAAAATAG 59.744 34.615 0.00 0.00 0.00 1.73
2722 3604 5.523188 TGAACAAGTGCAAAAGCAAAATAGG 59.477 36.000 0.00 0.00 0.00 2.57
2723 3605 5.275067 ACAAGTGCAAAAGCAAAATAGGA 57.725 34.783 0.00 0.00 0.00 2.94
2725 3607 6.112058 ACAAGTGCAAAAGCAAAATAGGAAA 58.888 32.000 0.00 0.00 0.00 3.13
2726 3608 6.037062 ACAAGTGCAAAAGCAAAATAGGAAAC 59.963 34.615 0.00 0.00 0.00 2.78
2727 3609 5.056480 AGTGCAAAAGCAAAATAGGAAACC 58.944 37.500 0.00 0.00 0.00 3.27
2736 3648 4.503123 GCAAAATAGGAAACCCAGCTTTGT 60.503 41.667 0.00 0.00 0.00 2.83
2737 3649 5.610398 CAAAATAGGAAACCCAGCTTTGTT 58.390 37.500 0.00 0.00 0.00 2.83
2739 3651 2.452600 AGGAAACCCAGCTTTGTTGA 57.547 45.000 0.00 0.00 0.00 3.18
2767 3679 3.961480 AAAGCAAAATAGGTTCCCAGC 57.039 42.857 0.00 0.00 0.00 4.85
2769 3681 2.450476 AGCAAAATAGGTTCCCAGCTG 58.550 47.619 6.78 6.78 31.45 4.24
2788 3700 3.495193 CTGAATTCATTCACAAGCACGG 58.505 45.455 8.96 0.00 41.51 4.94
2797 3709 0.457509 CACAAGCACGGCAACAAACA 60.458 50.000 0.00 0.00 0.00 2.83
2799 3711 1.226547 AAGCACGGCAACAAACACG 60.227 52.632 0.00 0.00 0.00 4.49
2803 3715 0.377554 CACGGCAACAAACACGGTTA 59.622 50.000 0.00 0.00 0.00 2.85
2809 3721 3.057876 GGCAACAAACACGGTTATCATGA 60.058 43.478 0.00 0.00 0.00 3.07
2818 3730 6.757897 ACACGGTTATCATGAATTTCACAT 57.242 33.333 0.00 0.00 0.00 3.21
2937 3884 3.451178 ACGACTATGGGTACAAGAGCAAT 59.549 43.478 0.00 0.00 0.00 3.56
2992 3939 6.805713 ACAAGAAAATACCCTGTCAAACTTG 58.194 36.000 0.00 0.00 37.56 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 0.096454 GCAACAAAGGTACGCCGATC 59.904 55.000 0.00 0.00 40.50 3.69
40 41 2.713154 GCGTCGTGCAACAAAGGT 59.287 55.556 0.00 0.00 45.45 3.50
41 42 2.170260 ATCGCGTCGTGCAACAAAGG 62.170 55.000 5.77 0.00 46.97 3.11
44 45 1.083080 CAATCGCGTCGTGCAACAA 60.083 52.632 5.77 0.00 46.97 2.83
46 47 1.966493 ATCCAATCGCGTCGTGCAAC 61.966 55.000 5.77 0.00 46.97 4.17
47 48 1.295357 AATCCAATCGCGTCGTGCAA 61.295 50.000 5.77 0.00 46.97 4.08
49 50 1.296867 CAATCCAATCGCGTCGTGC 60.297 57.895 5.77 0.00 41.47 5.34
50 51 1.081556 TCCAATCCAATCGCGTCGTG 61.082 55.000 5.77 0.00 0.00 4.35
51 52 0.179084 ATCCAATCCAATCGCGTCGT 60.179 50.000 5.77 0.00 0.00 4.34
52 53 0.937304 AATCCAATCCAATCGCGTCG 59.063 50.000 5.77 0.00 0.00 5.12
55 56 1.308047 TCCAATCCAATCCAATCGCG 58.692 50.000 0.00 0.00 0.00 5.87
77 99 5.751243 AAGAAATACCCGAAATCCAATCG 57.249 39.130 0.00 0.00 39.92 3.34
88 110 6.812879 AACTAACAAGGAAAGAAATACCCG 57.187 37.500 0.00 0.00 0.00 5.28
94 116 5.297527 GGACCGAAACTAACAAGGAAAGAAA 59.702 40.000 0.00 0.00 0.00 2.52
95 117 4.818005 GGACCGAAACTAACAAGGAAAGAA 59.182 41.667 0.00 0.00 0.00 2.52
97 119 4.024302 GTGGACCGAAACTAACAAGGAAAG 60.024 45.833 0.00 0.00 0.00 2.62
101 123 1.796459 CGTGGACCGAAACTAACAAGG 59.204 52.381 0.00 0.00 39.56 3.61
102 124 2.746269 TCGTGGACCGAAACTAACAAG 58.254 47.619 0.00 0.00 44.03 3.16
115 137 6.495706 ACAAAGAAAAGAAAGAATCGTGGAC 58.504 36.000 0.00 0.00 0.00 4.02
129 151 2.158310 AGGGAGGGGGAACAAAGAAAAG 60.158 50.000 0.00 0.00 0.00 2.27
132 154 1.073098 GAGGGAGGGGGAACAAAGAA 58.927 55.000 0.00 0.00 0.00 2.52
133 155 0.196118 AGAGGGAGGGGGAACAAAGA 59.804 55.000 0.00 0.00 0.00 2.52
138 160 0.620700 TAAGCAGAGGGAGGGGGAAC 60.621 60.000 0.00 0.00 0.00 3.62
140 162 0.620700 GTTAAGCAGAGGGAGGGGGA 60.621 60.000 0.00 0.00 0.00 4.81
141 163 1.636769 GGTTAAGCAGAGGGAGGGGG 61.637 65.000 0.00 0.00 0.00 5.40
142 164 0.914417 TGGTTAAGCAGAGGGAGGGG 60.914 60.000 2.54 0.00 0.00 4.79
143 165 0.543749 CTGGTTAAGCAGAGGGAGGG 59.456 60.000 26.83 0.46 0.00 4.30
144 166 1.280457 ACTGGTTAAGCAGAGGGAGG 58.720 55.000 34.80 12.96 0.00 4.30
145 167 4.762289 AATACTGGTTAAGCAGAGGGAG 57.238 45.455 34.80 13.63 0.00 4.30
146 168 6.824958 AATAATACTGGTTAAGCAGAGGGA 57.175 37.500 34.80 19.66 0.00 4.20
176 207 8.532819 GGCAGAGGCACTAATAGTAATAGTAAT 58.467 37.037 0.00 0.00 41.55 1.89
177 208 7.728981 AGGCAGAGGCACTAATAGTAATAGTAA 59.271 37.037 0.00 0.00 41.55 2.24
178 209 7.176865 CAGGCAGAGGCACTAATAGTAATAGTA 59.823 40.741 0.00 0.00 41.55 1.82
179 210 6.015010 CAGGCAGAGGCACTAATAGTAATAGT 60.015 42.308 0.00 0.00 41.55 2.12
180 211 6.015010 ACAGGCAGAGGCACTAATAGTAATAG 60.015 42.308 0.00 0.00 41.55 1.73
181 212 5.839063 ACAGGCAGAGGCACTAATAGTAATA 59.161 40.000 0.00 0.00 41.55 0.98
182 213 4.656112 ACAGGCAGAGGCACTAATAGTAAT 59.344 41.667 0.00 0.00 41.55 1.89
183 214 4.030913 ACAGGCAGAGGCACTAATAGTAA 58.969 43.478 0.00 0.00 41.55 2.24
184 215 3.637229 GACAGGCAGAGGCACTAATAGTA 59.363 47.826 0.00 0.00 41.55 1.82
185 216 2.432510 GACAGGCAGAGGCACTAATAGT 59.567 50.000 0.00 0.00 41.55 2.12
186 217 2.697751 AGACAGGCAGAGGCACTAATAG 59.302 50.000 0.00 0.00 41.55 1.73
187 218 2.752030 AGACAGGCAGAGGCACTAATA 58.248 47.619 0.00 0.00 41.55 0.98
188 219 1.577736 AGACAGGCAGAGGCACTAAT 58.422 50.000 0.00 0.00 41.55 1.73
189 220 1.002430 CAAGACAGGCAGAGGCACTAA 59.998 52.381 0.00 0.00 41.55 2.24
190 221 0.610174 CAAGACAGGCAGAGGCACTA 59.390 55.000 0.00 0.00 41.55 2.74
192 223 0.536006 AACAAGACAGGCAGAGGCAC 60.536 55.000 0.00 0.00 43.71 5.01
193 224 1.002430 CTAACAAGACAGGCAGAGGCA 59.998 52.381 0.00 0.00 43.71 4.75
194 225 1.677217 CCTAACAAGACAGGCAGAGGC 60.677 57.143 0.00 0.00 40.13 4.70
195 226 1.625818 ACCTAACAAGACAGGCAGAGG 59.374 52.381 0.00 0.00 35.14 3.69
196 227 3.409026 AACCTAACAAGACAGGCAGAG 57.591 47.619 0.00 0.00 35.14 3.35
197 228 3.260884 CCTAACCTAACAAGACAGGCAGA 59.739 47.826 0.00 0.00 35.14 4.26
198 229 3.008049 ACCTAACCTAACAAGACAGGCAG 59.992 47.826 0.00 0.00 35.14 4.85
199 230 2.976882 ACCTAACCTAACAAGACAGGCA 59.023 45.455 0.00 0.00 35.14 4.75
200 231 3.697619 ACCTAACCTAACAAGACAGGC 57.302 47.619 0.00 0.00 35.14 4.85
201 232 5.247792 ACCTAACCTAACCTAACAAGACAGG 59.752 44.000 0.00 0.00 37.97 4.00
202 233 6.356186 ACCTAACCTAACCTAACAAGACAG 57.644 41.667 0.00 0.00 0.00 3.51
203 234 6.752285 AACCTAACCTAACCTAACAAGACA 57.248 37.500 0.00 0.00 0.00 3.41
204 235 7.038729 ACCTAACCTAACCTAACCTAACAAGAC 60.039 40.741 0.00 0.00 0.00 3.01
205 236 7.018769 ACCTAACCTAACCTAACCTAACAAGA 58.981 38.462 0.00 0.00 0.00 3.02
217 248 3.810623 TGGATCCAACCTAACCTAACCT 58.189 45.455 13.46 0.00 0.00 3.50
219 250 5.823045 CAGATTGGATCCAACCTAACCTAAC 59.177 44.000 29.32 2.87 38.88 2.34
221 252 4.141482 GCAGATTGGATCCAACCTAACCTA 60.141 45.833 29.32 4.19 38.88 3.08
222 253 3.372025 GCAGATTGGATCCAACCTAACCT 60.372 47.826 29.32 11.84 38.88 3.50
223 254 2.952310 GCAGATTGGATCCAACCTAACC 59.048 50.000 29.32 12.74 38.88 2.85
224 255 3.629398 CAGCAGATTGGATCCAACCTAAC 59.371 47.826 29.32 19.42 38.88 2.34
225 256 3.889815 CAGCAGATTGGATCCAACCTAA 58.110 45.455 29.32 7.51 38.88 2.69
226 257 2.421952 GCAGCAGATTGGATCCAACCTA 60.422 50.000 29.32 7.94 38.88 3.08
227 258 1.684248 GCAGCAGATTGGATCCAACCT 60.684 52.381 29.32 23.15 38.88 3.50
228 259 0.743097 GCAGCAGATTGGATCCAACC 59.257 55.000 29.32 20.94 38.88 3.77
229 260 1.133790 GTGCAGCAGATTGGATCCAAC 59.866 52.381 29.32 21.12 38.88 3.77
230 261 1.272037 TGTGCAGCAGATTGGATCCAA 60.272 47.619 28.92 28.92 40.47 3.53
231 262 0.328926 TGTGCAGCAGATTGGATCCA 59.671 50.000 11.44 11.44 0.00 3.41
232 263 0.737219 GTGTGCAGCAGATTGGATCC 59.263 55.000 4.20 4.20 0.00 3.36
252 283 8.405531 GGCAAAATCTGTATGTGCTCTAATAAA 58.594 33.333 0.00 0.00 35.53 1.40
253 284 7.775093 AGGCAAAATCTGTATGTGCTCTAATAA 59.225 33.333 0.00 0.00 35.53 1.40
254 285 7.282585 AGGCAAAATCTGTATGTGCTCTAATA 58.717 34.615 0.00 0.00 35.53 0.98
255 286 6.125029 AGGCAAAATCTGTATGTGCTCTAAT 58.875 36.000 0.00 0.00 35.53 1.73
256 287 5.500234 AGGCAAAATCTGTATGTGCTCTAA 58.500 37.500 0.00 0.00 35.53 2.10
257 288 5.102953 AGGCAAAATCTGTATGTGCTCTA 57.897 39.130 0.00 0.00 35.53 2.43
291 322 5.220854 CGGCTAGAAGAGAAGAGAAGAGAAG 60.221 48.000 0.00 0.00 0.00 2.85
292 323 4.638421 CGGCTAGAAGAGAAGAGAAGAGAA 59.362 45.833 0.00 0.00 0.00 2.87
296 327 5.514274 AATCGGCTAGAAGAGAAGAGAAG 57.486 43.478 0.00 0.00 0.00 2.85
297 328 5.163499 GGAAATCGGCTAGAAGAGAAGAGAA 60.163 44.000 0.00 0.00 0.00 2.87
298 329 4.339814 GGAAATCGGCTAGAAGAGAAGAGA 59.660 45.833 0.00 0.00 0.00 3.10
299 330 4.340950 AGGAAATCGGCTAGAAGAGAAGAG 59.659 45.833 0.00 0.00 0.00 2.85
300 331 4.282496 AGGAAATCGGCTAGAAGAGAAGA 58.718 43.478 0.00 0.00 0.00 2.87
301 332 4.664150 AGGAAATCGGCTAGAAGAGAAG 57.336 45.455 0.00 0.00 0.00 2.85
302 333 5.420409 GAAAGGAAATCGGCTAGAAGAGAA 58.580 41.667 0.00 0.00 0.00 2.87
306 337 4.143986 AGGAAAGGAAATCGGCTAGAAG 57.856 45.455 0.00 0.00 0.00 2.85
323 354 2.050144 GATCCATGGAGGCAGTAGGAA 58.950 52.381 21.33 0.00 37.29 3.36
324 355 1.062198 TGATCCATGGAGGCAGTAGGA 60.062 52.381 21.33 0.00 37.29 2.94
325 356 1.071385 GTGATCCATGGAGGCAGTAGG 59.929 57.143 21.33 0.00 37.29 3.18
326 357 1.764723 TGTGATCCATGGAGGCAGTAG 59.235 52.381 21.33 0.00 37.29 2.57
327 358 1.764723 CTGTGATCCATGGAGGCAGTA 59.235 52.381 21.33 11.23 37.29 2.74
328 359 0.545171 CTGTGATCCATGGAGGCAGT 59.455 55.000 21.33 1.87 37.29 4.40
329 360 0.179026 CCTGTGATCCATGGAGGCAG 60.179 60.000 21.33 23.43 37.29 4.85
330 361 0.915872 ACCTGTGATCCATGGAGGCA 60.916 55.000 21.33 17.39 37.29 4.75
331 362 1.071385 CTACCTGTGATCCATGGAGGC 59.929 57.143 21.33 14.92 37.29 4.70
332 363 2.366916 GTCTACCTGTGATCCATGGAGG 59.633 54.545 21.33 17.27 39.47 4.30
333 364 3.303938 AGTCTACCTGTGATCCATGGAG 58.696 50.000 21.33 7.75 0.00 3.86
334 365 3.404869 AGTCTACCTGTGATCCATGGA 57.595 47.619 18.88 18.88 0.00 3.41
335 366 4.474394 TCTAGTCTACCTGTGATCCATGG 58.526 47.826 4.97 4.97 0.00 3.66
336 367 4.522405 CCTCTAGTCTACCTGTGATCCATG 59.478 50.000 0.00 0.00 0.00 3.66
338 369 3.786450 TCCTCTAGTCTACCTGTGATCCA 59.214 47.826 0.00 0.00 0.00 3.41
339 370 4.440826 TCCTCTAGTCTACCTGTGATCC 57.559 50.000 0.00 0.00 0.00 3.36
340 371 8.107095 AGATTATCCTCTAGTCTACCTGTGATC 58.893 40.741 0.00 0.00 0.00 2.92
341 372 7.995663 AGATTATCCTCTAGTCTACCTGTGAT 58.004 38.462 0.00 0.00 0.00 3.06
342 373 7.395525 AGATTATCCTCTAGTCTACCTGTGA 57.604 40.000 0.00 0.00 0.00 3.58
343 374 7.942341 AGAAGATTATCCTCTAGTCTACCTGTG 59.058 40.741 0.00 0.00 0.00 3.66
344 375 8.052621 AGAAGATTATCCTCTAGTCTACCTGT 57.947 38.462 0.00 0.00 0.00 4.00
345 376 8.792633 CAAGAAGATTATCCTCTAGTCTACCTG 58.207 40.741 0.00 0.00 0.00 4.00
346 377 7.450323 GCAAGAAGATTATCCTCTAGTCTACCT 59.550 40.741 0.00 0.00 0.00 3.08
347 378 7.309560 GGCAAGAAGATTATCCTCTAGTCTACC 60.310 44.444 0.00 0.00 0.00 3.18
349 380 6.722129 GGGCAAGAAGATTATCCTCTAGTCTA 59.278 42.308 0.00 0.00 0.00 2.59
365 683 2.586425 TGAAACAAGAGGGGCAAGAAG 58.414 47.619 0.00 0.00 0.00 2.85
391 714 1.801178 GCAAGCACCTCAGTCAGTAAC 59.199 52.381 0.00 0.00 0.00 2.50
397 720 1.818642 ATTCTGCAAGCACCTCAGTC 58.181 50.000 0.00 0.00 0.00 3.51
400 723 3.138884 TGTAATTCTGCAAGCACCTCA 57.861 42.857 0.00 0.00 0.00 3.86
401 724 5.118990 TCTATGTAATTCTGCAAGCACCTC 58.881 41.667 0.00 0.00 0.00 3.85
402 725 5.102953 TCTATGTAATTCTGCAAGCACCT 57.897 39.130 0.00 0.00 0.00 4.00
472 798 2.378445 TGCGTCTGCTGCTAAATACA 57.622 45.000 0.00 0.00 43.34 2.29
536 950 5.311649 ACCATCATTCCTAGATGCCAGTTAT 59.688 40.000 0.00 0.00 41.13 1.89
537 951 4.660303 ACCATCATTCCTAGATGCCAGTTA 59.340 41.667 0.00 0.00 41.13 2.24
543 957 4.965814 TGAGAACCATCATTCCTAGATGC 58.034 43.478 0.00 0.00 41.13 3.91
564 978 4.641989 AGTTGGTAAAGGATATGCAAGCTG 59.358 41.667 0.00 0.00 0.00 4.24
606 1020 9.516314 CTTATTGATGTGTATGAGTAAAGACGA 57.484 33.333 0.00 0.00 0.00 4.20
710 1372 9.661187 GAGATCAACATAGCATCTTAATTGTTG 57.339 33.333 7.15 7.15 43.14 3.33
728 1390 5.468072 AGAACACATCACACAAGAGATCAAC 59.532 40.000 0.00 0.00 0.00 3.18
791 1453 8.908172 AGTAATTTCGACTACTTAAGCACTAC 57.092 34.615 1.29 0.00 0.00 2.73
792 1454 9.994432 GTAGTAATTTCGACTACTTAAGCACTA 57.006 33.333 1.29 0.00 43.92 2.74
793 1455 7.972832 GGTAGTAATTTCGACTACTTAAGCACT 59.027 37.037 13.94 0.96 45.71 4.40
805 1467 3.195661 CAGGCAGGGTAGTAATTTCGAC 58.804 50.000 0.00 0.00 0.00 4.20
827 1489 7.281100 GGGAACAGAGTTTATCTTGGATACTTG 59.719 40.741 0.00 0.00 35.47 3.16
934 1604 8.971321 CCAATTGAACTGAAGTAAAATGTCAAG 58.029 33.333 7.12 0.00 0.00 3.02
1144 1856 2.038426 TGAATTCTGAACTGGAGCCGAA 59.962 45.455 7.05 0.00 0.00 4.30
1409 2150 8.850007 TCAGTACACCAGATATATAGACAGAC 57.150 38.462 0.00 0.00 0.00 3.51
1500 2308 6.072948 CGTACATTGGAGGTTTGTATGACAAA 60.073 38.462 0.69 0.69 44.91 2.83
1646 2464 4.438744 CCAGGTTTGAAGTGTCACTGTTTC 60.439 45.833 6.18 1.04 31.90 2.78
1679 2497 3.305361 CCTGCATATCGATATCAAGTGCG 59.695 47.826 15.08 12.04 34.06 5.34
1764 2582 3.910627 AGAGGAGGCCTTTTAAGAAGACA 59.089 43.478 6.77 0.00 31.76 3.41
1779 2597 1.519751 CGCCCATCGAGTAGAGGAGG 61.520 65.000 0.00 0.00 41.67 4.30
1884 2703 2.034305 CACGTAGTATGAGTAGGCCCAC 59.966 54.545 0.00 0.00 41.61 4.61
2402 3249 9.613428 ATCGAAAATCCATATACTTTCACTGAA 57.387 29.630 0.00 0.00 0.00 3.02
2428 3275 5.836821 ATACGAGCTGACTGTCTTTATCA 57.163 39.130 9.51 0.00 0.00 2.15
2447 3294 9.378551 TGTGGTGAATTTTCTGACAGTATATAC 57.621 33.333 4.60 4.60 0.00 1.47
2525 3404 6.434340 ACTGTTAGGCCAAATCTCTTTTTAGG 59.566 38.462 5.01 0.00 0.00 2.69
2528 3407 6.731292 AACTGTTAGGCCAAATCTCTTTTT 57.269 33.333 5.01 0.00 0.00 1.94
2542 3421 8.026607 TGTCTTGTTTTGAGAAAAACTGTTAGG 58.973 33.333 13.46 0.00 41.78 2.69
2660 3540 2.892374 TCATACATTGCCAGTGTCTCG 58.108 47.619 0.00 0.00 0.00 4.04
2661 3541 5.575957 CATTTCATACATTGCCAGTGTCTC 58.424 41.667 0.00 0.00 0.00 3.36
2662 3542 4.142315 GCATTTCATACATTGCCAGTGTCT 60.142 41.667 0.00 0.00 0.00 3.41
2665 3545 4.112716 TGCATTTCATACATTGCCAGTG 57.887 40.909 0.00 0.00 34.20 3.66
2709 3591 4.347876 AGCTGGGTTTCCTATTTTGCTTTT 59.652 37.500 0.00 0.00 0.00 2.27
2710 3592 3.903714 AGCTGGGTTTCCTATTTTGCTTT 59.096 39.130 0.00 0.00 0.00 3.51
2713 3595 3.961480 AAGCTGGGTTTCCTATTTTGC 57.039 42.857 0.00 0.00 0.00 3.68
2719 3601 3.137544 TCTCAACAAAGCTGGGTTTCCTA 59.862 43.478 0.77 0.00 0.00 2.94
2721 3603 2.306847 TCTCAACAAAGCTGGGTTTCC 58.693 47.619 0.77 0.00 0.00 3.13
2722 3604 3.130340 TGTTCTCAACAAAGCTGGGTTTC 59.870 43.478 0.77 0.00 38.72 2.78
2723 3605 3.096092 TGTTCTCAACAAAGCTGGGTTT 58.904 40.909 0.77 0.00 38.72 3.27
2725 3607 2.024414 GTGTTCTCAACAAAGCTGGGT 58.976 47.619 0.00 0.00 44.16 4.51
2726 3608 2.023673 TGTGTTCTCAACAAAGCTGGG 58.976 47.619 0.00 0.00 44.16 4.45
2727 3609 3.781079 TTGTGTTCTCAACAAAGCTGG 57.219 42.857 0.00 0.00 44.16 4.85
2736 3648 6.872920 ACCTATTTTGCTTTTGTGTTCTCAA 58.127 32.000 0.00 0.00 0.00 3.02
2737 3649 6.463995 ACCTATTTTGCTTTTGTGTTCTCA 57.536 33.333 0.00 0.00 0.00 3.27
2739 3651 6.280643 GGAACCTATTTTGCTTTTGTGTTCT 58.719 36.000 0.00 0.00 32.37 3.01
2767 3679 3.495193 CCGTGCTTGTGAATGAATTCAG 58.505 45.455 14.54 0.00 46.44 3.02
2769 3681 2.253603 GCCGTGCTTGTGAATGAATTC 58.746 47.619 0.00 0.00 37.31 2.17
2788 3700 4.153958 TCATGATAACCGTGTTTGTTGC 57.846 40.909 0.00 0.00 33.53 4.17
2797 3709 7.572523 ATGATGTGAAATTCATGATAACCGT 57.427 32.000 0.00 0.00 31.51 4.83
2937 3884 5.278463 GCTTGTGAGATGCCAAAGTTTCTTA 60.278 40.000 0.00 0.00 0.00 2.10
3053 4005 7.829211 CCTGGAAGTCATTATAACCAAGAAGAA 59.171 37.037 0.00 0.00 0.00 2.52
3054 4006 7.338710 CCTGGAAGTCATTATAACCAAGAAGA 58.661 38.462 0.00 0.00 0.00 2.87
3055 4007 6.543831 CCCTGGAAGTCATTATAACCAAGAAG 59.456 42.308 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.