Multiple sequence alignment - TraesCS2B01G022700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G022700 chr2B 100.000 4710 0 0 1 4710 10780297 10785006 0.000000e+00 8698
1 TraesCS2B01G022700 chr2A 90.146 1644 85 27 925 2545 532481 530892 0.000000e+00 2067
2 TraesCS2B01G022700 chr2A 90.172 814 40 17 2551 3354 530817 530034 0.000000e+00 1024
3 TraesCS2B01G022700 chr2A 85.480 792 57 30 3959 4710 529271 528498 0.000000e+00 773
4 TraesCS2B01G022700 chr2A 85.056 629 49 23 3384 3977 529906 529288 2.430000e-167 599
5 TraesCS2B01G022700 chr2A 87.379 103 5 3 805 899 532678 532576 1.390000e-20 111
6 TraesCS2B01G022700 chr2D 88.570 1531 87 38 2551 4069 677388 675934 0.000000e+00 1777
7 TraesCS2B01G022700 chr2D 85.271 1419 121 38 652 2019 679448 678067 0.000000e+00 1382
8 TraesCS2B01G022700 chr2D 91.961 510 36 2 2042 2548 678072 677565 0.000000e+00 710
9 TraesCS2B01G022700 chr2D 92.748 262 16 3 4167 4426 675830 675570 4.450000e-100 375
10 TraesCS2B01G022700 chr2D 91.228 228 16 4 1529 1753 648750924 648750698 1.650000e-79 307
11 TraesCS2B01G022700 chr2D 87.413 286 11 9 4428 4710 675539 675276 5.920000e-79 305
12 TraesCS2B01G022700 chr2D 82.645 121 11 10 1 112 680112 679993 1.080000e-16 99
13 TraesCS2B01G022700 chr4A 93.388 121 6 2 2300 2419 661849101 661848982 1.350000e-40 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G022700 chr2B 10780297 10785006 4709 False 8698.000000 8698 100.000000 1 4710 1 chr2B.!!$F1 4709
1 TraesCS2B01G022700 chr2A 528498 532678 4180 True 914.800000 2067 87.646600 805 4710 5 chr2A.!!$R1 3905
2 TraesCS2B01G022700 chr2D 675276 680112 4836 True 774.666667 1777 88.101333 1 4710 6 chr2D.!!$R2 4709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 478 0.040067 CGCTCTCTGGTTTGGTTTGC 60.040 55.0 0.00 0.00 0.0 3.68 F
1484 1741 0.108424 GACAAGTCTGATGCGCCTCT 60.108 55.0 13.93 0.00 0.0 3.69 F
1485 1742 0.390866 ACAAGTCTGATGCGCCTCTG 60.391 55.0 13.93 13.07 0.0 3.35 F
1896 2201 0.881796 TACTCTGTCCTCAGCACGTG 59.118 55.0 12.28 12.28 41.1 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1581 1850 0.816825 CCGCACCCCAGAGATGATTG 60.817 60.000 0.00 0.0 0.00 2.67 R
2549 3034 0.839946 CCCAGGAGATGTAACAGGGG 59.160 60.000 0.00 0.0 0.00 4.79 R
2709 3200 1.071228 AGCTGCATCTCACAAGTCACA 59.929 47.619 1.02 0.0 0.00 3.58 R
3723 4367 0.178861 AGACCCACCAGTCCAGGAAT 60.179 55.000 0.00 0.0 37.49 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.757099 GGTAAGCCCTCGGTCGGA 60.757 66.667 0.00 0.00 0.00 4.55
61 76 2.787866 CCCCCTCCTTCTCCTCCA 59.212 66.667 0.00 0.00 0.00 3.86
71 86 2.318908 CTTCTCCTCCATCTCCTCTGG 58.681 57.143 0.00 0.00 34.93 3.86
78 93 0.539051 CCATCTCCTCTGGTGTGGTC 59.461 60.000 0.00 0.00 0.00 4.02
79 94 1.566211 CATCTCCTCTGGTGTGGTCT 58.434 55.000 0.00 0.00 0.00 3.85
82 97 0.833834 CTCCTCTGGTGTGGTCTGGT 60.834 60.000 0.00 0.00 0.00 4.00
83 98 0.399949 TCCTCTGGTGTGGTCTGGTT 60.400 55.000 0.00 0.00 0.00 3.67
84 99 0.250467 CCTCTGGTGTGGTCTGGTTG 60.250 60.000 0.00 0.00 0.00 3.77
85 100 0.469917 CTCTGGTGTGGTCTGGTTGT 59.530 55.000 0.00 0.00 0.00 3.32
86 101 0.180171 TCTGGTGTGGTCTGGTTGTG 59.820 55.000 0.00 0.00 0.00 3.33
87 102 1.447317 CTGGTGTGGTCTGGTTGTGC 61.447 60.000 0.00 0.00 0.00 4.57
112 127 1.739562 GCCGCGGATGGATCTGATC 60.740 63.158 33.48 9.18 35.13 2.92
123 138 2.029838 GATCTGATCCACACACCCAC 57.970 55.000 6.37 0.00 0.00 4.61
124 139 0.620556 ATCTGATCCACACACCCACC 59.379 55.000 0.00 0.00 0.00 4.61
125 140 1.002134 CTGATCCACACACCCACCC 60.002 63.158 0.00 0.00 0.00 4.61
126 141 1.772156 TGATCCACACACCCACCCA 60.772 57.895 0.00 0.00 0.00 4.51
127 142 1.303317 GATCCACACACCCACCCAC 60.303 63.158 0.00 0.00 0.00 4.61
128 143 2.764637 GATCCACACACCCACCCACC 62.765 65.000 0.00 0.00 0.00 4.61
129 144 4.596585 CCACACACCCACCCACCC 62.597 72.222 0.00 0.00 0.00 4.61
130 145 3.814906 CACACACCCACCCACCCA 61.815 66.667 0.00 0.00 0.00 4.51
131 146 3.816090 ACACACCCACCCACCCAC 61.816 66.667 0.00 0.00 0.00 4.61
132 147 4.947147 CACACCCACCCACCCACG 62.947 72.222 0.00 0.00 0.00 4.94
135 150 4.892291 ACCCACCCACCCACGTCT 62.892 66.667 0.00 0.00 0.00 4.18
136 151 4.016706 CCCACCCACCCACGTCTC 62.017 72.222 0.00 0.00 0.00 3.36
138 153 2.923035 CACCCACCCACGTCTCCT 60.923 66.667 0.00 0.00 0.00 3.69
139 154 2.603776 ACCCACCCACGTCTCCTC 60.604 66.667 0.00 0.00 0.00 3.71
140 155 3.391382 CCCACCCACGTCTCCTCC 61.391 72.222 0.00 0.00 0.00 4.30
141 156 3.760035 CCACCCACGTCTCCTCCG 61.760 72.222 0.00 0.00 0.00 4.63
142 157 4.436998 CACCCACGTCTCCTCCGC 62.437 72.222 0.00 0.00 0.00 5.54
145 160 4.477975 CCACGTCTCCTCCGCGAC 62.478 72.222 8.23 0.00 0.00 5.19
146 161 4.477975 CACGTCTCCTCCGCGACC 62.478 72.222 8.23 0.00 0.00 4.79
148 163 3.744719 CGTCTCCTCCGCGACCAA 61.745 66.667 8.23 0.00 0.00 3.67
149 164 2.182030 GTCTCCTCCGCGACCAAG 59.818 66.667 8.23 0.00 0.00 3.61
150 165 2.035155 TCTCCTCCGCGACCAAGA 59.965 61.111 8.23 1.97 0.00 3.02
151 166 1.605451 TCTCCTCCGCGACCAAGAA 60.605 57.895 8.23 0.00 0.00 2.52
153 168 0.737715 CTCCTCCGCGACCAAGAAAG 60.738 60.000 8.23 0.00 0.00 2.62
154 169 1.183030 TCCTCCGCGACCAAGAAAGA 61.183 55.000 8.23 0.00 0.00 2.52
155 170 0.320421 CCTCCGCGACCAAGAAAGAA 60.320 55.000 8.23 0.00 0.00 2.52
156 171 1.508632 CTCCGCGACCAAGAAAGAAA 58.491 50.000 8.23 0.00 0.00 2.52
157 172 2.076863 CTCCGCGACCAAGAAAGAAAT 58.923 47.619 8.23 0.00 0.00 2.17
158 173 2.073816 TCCGCGACCAAGAAAGAAATC 58.926 47.619 8.23 0.00 0.00 2.17
159 174 1.130561 CCGCGACCAAGAAAGAAATCC 59.869 52.381 8.23 0.00 0.00 3.01
160 175 1.130561 CGCGACCAAGAAAGAAATCCC 59.869 52.381 0.00 0.00 0.00 3.85
161 176 2.437413 GCGACCAAGAAAGAAATCCCT 58.563 47.619 0.00 0.00 0.00 4.20
183 241 2.913617 TCCTTCCTTCCTTCCTTCCTTC 59.086 50.000 0.00 0.00 0.00 3.46
184 242 2.025793 CCTTCCTTCCTTCCTTCCTTCC 60.026 54.545 0.00 0.00 0.00 3.46
185 243 1.670059 TCCTTCCTTCCTTCCTTCCC 58.330 55.000 0.00 0.00 0.00 3.97
186 244 1.154434 TCCTTCCTTCCTTCCTTCCCT 59.846 52.381 0.00 0.00 0.00 4.20
187 245 1.283321 CCTTCCTTCCTTCCTTCCCTG 59.717 57.143 0.00 0.00 0.00 4.45
198 258 4.656112 CCTTCCTTCCCTGAGTATGTATGT 59.344 45.833 0.00 0.00 0.00 2.29
199 259 5.839063 CCTTCCTTCCCTGAGTATGTATGTA 59.161 44.000 0.00 0.00 0.00 2.29
201 261 6.918067 TCCTTCCCTGAGTATGTATGTATG 57.082 41.667 0.00 0.00 0.00 2.39
202 262 6.620429 TCCTTCCCTGAGTATGTATGTATGA 58.380 40.000 0.00 0.00 0.00 2.15
203 263 7.248976 TCCTTCCCTGAGTATGTATGTATGAT 58.751 38.462 0.00 0.00 0.00 2.45
206 266 8.491045 TTCCCTGAGTATGTATGTATGATTGA 57.509 34.615 0.00 0.00 0.00 2.57
207 267 8.670521 TCCCTGAGTATGTATGTATGATTGAT 57.329 34.615 0.00 0.00 0.00 2.57
210 270 9.933723 CCTGAGTATGTATGTATGATTGATTGA 57.066 33.333 0.00 0.00 0.00 2.57
219 279 9.764870 GTATGTATGATTGATTGATTGATTCGG 57.235 33.333 0.00 0.00 0.00 4.30
223 283 6.947644 TGATTGATTGATTGATTCGGATGT 57.052 33.333 0.00 0.00 0.00 3.06
225 285 4.556942 TGATTGATTGATTCGGATGTGC 57.443 40.909 0.00 0.00 0.00 4.57
227 287 4.035909 TGATTGATTGATTCGGATGTGCTG 59.964 41.667 0.00 0.00 0.00 4.41
228 288 3.264998 TGATTGATTCGGATGTGCTGA 57.735 42.857 0.00 0.00 0.00 4.26
229 289 3.200483 TGATTGATTCGGATGTGCTGAG 58.800 45.455 0.00 0.00 32.37 3.35
238 298 2.214181 GATGTGCTGAGGTCCGTCGT 62.214 60.000 0.00 0.00 0.00 4.34
239 299 0.963856 ATGTGCTGAGGTCCGTCGTA 60.964 55.000 0.00 0.00 0.00 3.43
240 300 1.136984 GTGCTGAGGTCCGTCGTAG 59.863 63.158 0.00 0.00 0.00 3.51
241 301 2.102553 GCTGAGGTCCGTCGTAGC 59.897 66.667 0.00 0.00 0.00 3.58
242 302 2.799371 CTGAGGTCCGTCGTAGCC 59.201 66.667 0.00 0.00 0.00 3.93
252 374 1.269569 CCGTCGTAGCCTGATGCAATA 60.270 52.381 0.00 0.00 44.83 1.90
282 404 6.980397 TGTGCCATTCTTTCTTTCTTTCTTTC 59.020 34.615 0.00 0.00 0.00 2.62
283 405 7.147846 TGTGCCATTCTTTCTTTCTTTCTTTCT 60.148 33.333 0.00 0.00 0.00 2.52
285 407 8.260114 TGCCATTCTTTCTTTCTTTCTTTCTTT 58.740 29.630 0.00 0.00 0.00 2.52
286 408 9.102757 GCCATTCTTTCTTTCTTTCTTTCTTTT 57.897 29.630 0.00 0.00 0.00 2.27
300 422 1.958288 TCTTTTCTCCTCCCTCCCTG 58.042 55.000 0.00 0.00 0.00 4.45
301 423 1.437149 TCTTTTCTCCTCCCTCCCTGA 59.563 52.381 0.00 0.00 0.00 3.86
302 424 1.836802 CTTTTCTCCTCCCTCCCTGAG 59.163 57.143 0.00 0.00 0.00 3.35
309 431 1.547755 TCCCTCCCTGAGTCCCTCT 60.548 63.158 0.00 0.00 0.00 3.69
310 432 1.382420 CCCTCCCTGAGTCCCTCTG 60.382 68.421 0.00 0.00 0.00 3.35
312 434 0.631753 CCTCCCTGAGTCCCTCTGTA 59.368 60.000 0.00 0.00 0.00 2.74
317 439 3.467483 TCCCTGAGTCCCTCTGTATGTAT 59.533 47.826 0.00 0.00 0.00 2.29
339 461 9.713713 TGTATCTATCTATCTATCTATGTCCGC 57.286 37.037 0.00 0.00 0.00 5.54
340 462 9.938280 GTATCTATCTATCTATCTATGTCCGCT 57.062 37.037 0.00 0.00 0.00 5.52
342 464 8.257602 TCTATCTATCTATCTATGTCCGCTCT 57.742 38.462 0.00 0.00 0.00 4.09
343 465 8.364894 TCTATCTATCTATCTATGTCCGCTCTC 58.635 40.741 0.00 0.00 0.00 3.20
344 466 6.553953 TCTATCTATCTATGTCCGCTCTCT 57.446 41.667 0.00 0.00 0.00 3.10
345 467 6.345298 TCTATCTATCTATGTCCGCTCTCTG 58.655 44.000 0.00 0.00 0.00 3.35
346 468 3.680490 TCTATCTATGTCCGCTCTCTGG 58.320 50.000 0.00 0.00 0.00 3.86
356 478 0.040067 CGCTCTCTGGTTTGGTTTGC 60.040 55.000 0.00 0.00 0.00 3.68
358 480 2.504367 GCTCTCTGGTTTGGTTTGCTA 58.496 47.619 0.00 0.00 0.00 3.49
366 488 4.469657 TGGTTTGGTTTGCTAAGAGTCAT 58.530 39.130 0.00 0.00 0.00 3.06
368 490 5.705441 TGGTTTGGTTTGCTAAGAGTCATAG 59.295 40.000 0.00 0.00 0.00 2.23
372 494 6.544928 TGGTTTGCTAAGAGTCATAGATGA 57.455 37.500 6.58 0.00 0.00 2.92
396 532 2.785857 AGGGGAGGGGATTCATACAAAG 59.214 50.000 0.00 0.00 0.00 2.77
400 536 4.079730 GGGAGGGGATTCATACAAAGTCTT 60.080 45.833 0.00 0.00 0.00 3.01
401 537 5.132144 GGGAGGGGATTCATACAAAGTCTTA 59.868 44.000 0.00 0.00 0.00 2.10
402 538 6.292150 GGAGGGGATTCATACAAAGTCTTAG 58.708 44.000 0.00 0.00 0.00 2.18
403 539 6.126739 GGAGGGGATTCATACAAAGTCTTAGT 60.127 42.308 0.00 0.00 0.00 2.24
404 540 6.890293 AGGGGATTCATACAAAGTCTTAGTC 58.110 40.000 0.00 0.00 0.00 2.59
434 570 9.939802 TTTACTTATCTGTTTCTTTCTACTCCC 57.060 33.333 0.00 0.00 0.00 4.30
435 571 7.800300 ACTTATCTGTTTCTTTCTACTCCCT 57.200 36.000 0.00 0.00 0.00 4.20
436 572 7.842982 ACTTATCTGTTTCTTTCTACTCCCTC 58.157 38.462 0.00 0.00 0.00 4.30
438 574 3.838903 TCTGTTTCTTTCTACTCCCTCCC 59.161 47.826 0.00 0.00 0.00 4.30
439 575 3.841255 CTGTTTCTTTCTACTCCCTCCCT 59.159 47.826 0.00 0.00 0.00 4.20
440 576 4.240323 TGTTTCTTTCTACTCCCTCCCTT 58.760 43.478 0.00 0.00 0.00 3.95
441 577 4.286291 TGTTTCTTTCTACTCCCTCCCTTC 59.714 45.833 0.00 0.00 0.00 3.46
442 578 4.421574 TTCTTTCTACTCCCTCCCTTCT 57.578 45.455 0.00 0.00 0.00 2.85
443 579 5.547631 TTCTTTCTACTCCCTCCCTTCTA 57.452 43.478 0.00 0.00 0.00 2.10
444 580 5.547631 TCTTTCTACTCCCTCCCTTCTAA 57.452 43.478 0.00 0.00 0.00 2.10
445 581 5.912103 TCTTTCTACTCCCTCCCTTCTAAA 58.088 41.667 0.00 0.00 0.00 1.85
446 582 6.328592 TCTTTCTACTCCCTCCCTTCTAAAA 58.671 40.000 0.00 0.00 0.00 1.52
447 583 6.966461 TCTTTCTACTCCCTCCCTTCTAAAAT 59.034 38.462 0.00 0.00 0.00 1.82
448 584 8.127038 TCTTTCTACTCCCTCCCTTCTAAAATA 58.873 37.037 0.00 0.00 0.00 1.40
449 585 7.916077 TTCTACTCCCTCCCTTCTAAAATAG 57.084 40.000 0.00 0.00 0.00 1.73
450 586 7.235159 TCTACTCCCTCCCTTCTAAAATAGA 57.765 40.000 0.00 0.00 0.00 1.98
451 587 7.838241 TCTACTCCCTCCCTTCTAAAATAGAT 58.162 38.462 0.00 0.00 34.22 1.98
452 588 8.967577 TCTACTCCCTCCCTTCTAAAATAGATA 58.032 37.037 0.00 0.00 34.22 1.98
453 589 9.603189 CTACTCCCTCCCTTCTAAAATAGATAA 57.397 37.037 0.00 0.00 34.22 1.75
454 590 8.871570 ACTCCCTCCCTTCTAAAATAGATAAA 57.128 34.615 0.00 0.00 34.22 1.40
455 591 9.292751 ACTCCCTCCCTTCTAAAATAGATAAAA 57.707 33.333 0.00 0.00 34.22 1.52
456 592 9.785982 CTCCCTCCCTTCTAAAATAGATAAAAG 57.214 37.037 0.00 0.00 34.22 2.27
457 593 8.218488 TCCCTCCCTTCTAAAATAGATAAAAGC 58.782 37.037 0.00 0.00 34.22 3.51
458 594 8.221251 CCCTCCCTTCTAAAATAGATAAAAGCT 58.779 37.037 0.00 0.00 34.22 3.74
459 595 9.634021 CCTCCCTTCTAAAATAGATAAAAGCTT 57.366 33.333 0.00 0.00 34.22 3.74
468 604 8.846943 AAAATAGATAAAAGCTTTGTTTGGGG 57.153 30.769 13.54 0.00 0.00 4.96
469 605 7.790782 AATAGATAAAAGCTTTGTTTGGGGA 57.209 32.000 13.54 0.00 0.00 4.81
470 606 7.790782 ATAGATAAAAGCTTTGTTTGGGGAA 57.209 32.000 13.54 0.00 0.00 3.97
471 607 6.493189 AGATAAAAGCTTTGTTTGGGGAAA 57.507 33.333 13.54 0.00 0.00 3.13
472 608 6.524734 AGATAAAAGCTTTGTTTGGGGAAAG 58.475 36.000 13.54 0.00 33.15 2.62
473 609 4.835284 AAAAGCTTTGTTTGGGGAAAGA 57.165 36.364 13.54 0.00 31.89 2.52
474 610 4.835284 AAAGCTTTGTTTGGGGAAAGAA 57.165 36.364 11.80 0.00 31.89 2.52
475 611 4.835284 AAGCTTTGTTTGGGGAAAGAAA 57.165 36.364 0.00 0.00 31.89 2.52
476 612 5.372343 AAGCTTTGTTTGGGGAAAGAAAT 57.628 34.783 0.00 0.00 31.89 2.17
477 613 4.707105 AGCTTTGTTTGGGGAAAGAAATG 58.293 39.130 0.00 0.00 31.89 2.32
478 614 3.814842 GCTTTGTTTGGGGAAAGAAATGG 59.185 43.478 0.00 0.00 31.89 3.16
479 615 4.444164 GCTTTGTTTGGGGAAAGAAATGGA 60.444 41.667 0.00 0.00 31.89 3.41
480 616 5.745770 GCTTTGTTTGGGGAAAGAAATGGAT 60.746 40.000 0.00 0.00 31.89 3.41
481 617 6.519891 GCTTTGTTTGGGGAAAGAAATGGATA 60.520 38.462 0.00 0.00 31.89 2.59
499 635 8.618702 AATGGATATCTCTGTTTGCTTGATAG 57.381 34.615 2.05 0.00 0.00 2.08
525 664 9.746457 GAATAGATTATTAATCCCTGCTTTCCT 57.254 33.333 11.89 0.00 38.71 3.36
534 673 5.894298 ATCCCTGCTTTCCTTTTTCTTTT 57.106 34.783 0.00 0.00 0.00 2.27
535 674 5.276461 TCCCTGCTTTCCTTTTTCTTTTC 57.724 39.130 0.00 0.00 0.00 2.29
539 678 4.441792 TGCTTTCCTTTTTCTTTTCTGCC 58.558 39.130 0.00 0.00 0.00 4.85
541 680 5.362430 TGCTTTCCTTTTTCTTTTCTGCCTA 59.638 36.000 0.00 0.00 0.00 3.93
542 681 5.692204 GCTTTCCTTTTTCTTTTCTGCCTAC 59.308 40.000 0.00 0.00 0.00 3.18
543 682 6.461648 GCTTTCCTTTTTCTTTTCTGCCTACT 60.462 38.462 0.00 0.00 0.00 2.57
545 684 5.690865 TCCTTTTTCTTTTCTGCCTACTCA 58.309 37.500 0.00 0.00 0.00 3.41
546 685 6.306987 TCCTTTTTCTTTTCTGCCTACTCAT 58.693 36.000 0.00 0.00 0.00 2.90
547 686 6.207417 TCCTTTTTCTTTTCTGCCTACTCATG 59.793 38.462 0.00 0.00 0.00 3.07
548 687 5.376854 TTTTCTTTTCTGCCTACTCATGC 57.623 39.130 0.00 0.00 0.00 4.06
549 688 2.991250 TCTTTTCTGCCTACTCATGCC 58.009 47.619 0.00 0.00 0.00 4.40
550 689 2.573462 TCTTTTCTGCCTACTCATGCCT 59.427 45.455 0.00 0.00 0.00 4.75
551 690 2.698855 TTTCTGCCTACTCATGCCTC 57.301 50.000 0.00 0.00 0.00 4.70
552 691 1.871418 TTCTGCCTACTCATGCCTCT 58.129 50.000 0.00 0.00 0.00 3.69
553 692 1.117994 TCTGCCTACTCATGCCTCTG 58.882 55.000 0.00 0.00 0.00 3.35
554 693 0.532417 CTGCCTACTCATGCCTCTGC 60.532 60.000 0.00 0.00 38.26 4.26
555 694 1.227793 GCCTACTCATGCCTCTGCC 60.228 63.158 0.00 0.00 36.33 4.85
556 695 1.694133 GCCTACTCATGCCTCTGCCT 61.694 60.000 0.00 0.00 36.33 4.75
557 696 0.392336 CCTACTCATGCCTCTGCCTC 59.608 60.000 0.00 0.00 36.33 4.70
558 697 1.412079 CTACTCATGCCTCTGCCTCT 58.588 55.000 0.00 0.00 36.33 3.69
559 698 1.068895 CTACTCATGCCTCTGCCTCTG 59.931 57.143 0.00 0.00 36.33 3.35
560 699 1.524165 CTCATGCCTCTGCCTCTGC 60.524 63.158 0.00 0.00 36.33 4.26
561 700 2.516460 CATGCCTCTGCCTCTGCC 60.516 66.667 0.00 0.00 36.33 4.85
567 706 3.388703 CTCTGCCTCTGCCTCTGCC 62.389 68.421 0.00 0.00 36.33 4.85
588 727 1.066358 TCTGCTTGCCTGTCTCTCATG 60.066 52.381 0.00 0.00 0.00 3.07
595 734 4.623932 TGCCTGTCTCTCATGTTTACTT 57.376 40.909 0.00 0.00 0.00 2.24
613 752 9.835389 TGTTTACTTACATGATGATGATGATGA 57.165 29.630 0.00 0.00 33.36 2.92
618 757 9.167311 ACTTACATGATGATGATGATGATGATG 57.833 33.333 0.00 0.00 33.36 3.07
619 758 9.383519 CTTACATGATGATGATGATGATGATGA 57.616 33.333 0.00 0.00 33.36 2.92
620 759 9.905713 TTACATGATGATGATGATGATGATGAT 57.094 29.630 0.00 0.00 33.36 2.45
621 760 8.218338 ACATGATGATGATGATGATGATGATG 57.782 34.615 0.00 0.00 33.36 3.07
622 761 8.049117 ACATGATGATGATGATGATGATGATGA 58.951 33.333 0.00 0.00 33.36 2.92
623 762 9.064706 CATGATGATGATGATGATGATGATGAT 57.935 33.333 0.00 0.00 0.00 2.45
624 763 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
625 764 8.267183 TGATGATGATGATGATGATGATGATGA 58.733 33.333 0.00 0.00 0.00 2.92
626 765 9.282569 GATGATGATGATGATGATGATGATGAT 57.717 33.333 0.00 0.00 0.00 2.45
627 766 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
628 767 8.267183 TGATGATGATGATGATGATGATGATGA 58.733 33.333 0.00 0.00 0.00 2.92
629 768 9.282569 GATGATGATGATGATGATGATGATGAT 57.717 33.333 0.00 0.00 0.00 2.45
630 769 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
631 770 8.267183 TGATGATGATGATGATGATGATGATGA 58.733 33.333 0.00 0.00 0.00 2.92
632 771 9.282569 GATGATGATGATGATGATGATGATGAT 57.717 33.333 0.00 0.00 0.00 2.45
633 772 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
634 773 8.267183 TGATGATGATGATGATGATGATGATGA 58.733 33.333 0.00 0.00 0.00 2.92
635 774 9.282569 GATGATGATGATGATGATGATGATGAT 57.717 33.333 0.00 0.00 0.00 2.45
636 775 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
637 776 8.267183 TGATGATGATGATGATGATGATGATGA 58.733 33.333 0.00 0.00 0.00 2.92
638 777 9.282569 GATGATGATGATGATGATGATGATGAT 57.717 33.333 0.00 0.00 0.00 2.45
639 778 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
640 779 6.683974 TGATGATGATGATGATGATGATGC 57.316 37.500 0.00 0.00 0.00 3.91
641 780 5.294306 TGATGATGATGATGATGATGATGCG 59.706 40.000 0.00 0.00 0.00 4.73
642 781 3.938963 TGATGATGATGATGATGATGCGG 59.061 43.478 0.00 0.00 0.00 5.69
643 782 3.412237 TGATGATGATGATGATGCGGT 57.588 42.857 0.00 0.00 0.00 5.68
644 783 3.332034 TGATGATGATGATGATGCGGTC 58.668 45.455 0.00 0.00 0.00 4.79
645 784 2.914695 TGATGATGATGATGCGGTCA 57.085 45.000 0.00 0.00 42.06 4.02
646 785 2.486918 TGATGATGATGATGCGGTCAC 58.513 47.619 0.00 0.00 40.28 3.67
647 786 1.802960 GATGATGATGATGCGGTCACC 59.197 52.381 0.00 0.00 40.28 4.02
648 787 0.179048 TGATGATGATGCGGTCACCC 60.179 55.000 0.00 0.00 40.28 4.61
649 788 0.179048 GATGATGATGCGGTCACCCA 60.179 55.000 0.00 0.00 40.28 4.51
650 789 0.475475 ATGATGATGCGGTCACCCAT 59.525 50.000 0.00 0.00 40.28 4.00
676 815 2.583520 CCCACCTCTGCTCTGCTC 59.416 66.667 0.00 0.00 0.00 4.26
677 816 1.988956 CCCACCTCTGCTCTGCTCT 60.989 63.158 0.00 0.00 0.00 4.09
678 817 1.551908 CCCACCTCTGCTCTGCTCTT 61.552 60.000 0.00 0.00 0.00 2.85
679 818 0.391395 CCACCTCTGCTCTGCTCTTG 60.391 60.000 0.00 0.00 0.00 3.02
680 819 0.321021 CACCTCTGCTCTGCTCTTGT 59.679 55.000 0.00 0.00 0.00 3.16
690 829 1.555075 TCTGCTCTTGTACCACCCATC 59.445 52.381 0.00 0.00 0.00 3.51
695 834 3.763897 GCTCTTGTACCACCCATCAAATT 59.236 43.478 0.00 0.00 0.00 1.82
696 835 4.142381 GCTCTTGTACCACCCATCAAATTC 60.142 45.833 0.00 0.00 0.00 2.17
706 850 5.259632 CACCCATCAAATTCCTCTTCTCTT 58.740 41.667 0.00 0.00 0.00 2.85
710 854 7.394641 ACCCATCAAATTCCTCTTCTCTTTAAC 59.605 37.037 0.00 0.00 0.00 2.01
743 887 8.985315 TGATGATATTGCTCTTCCTACATTTT 57.015 30.769 0.00 0.00 0.00 1.82
744 888 8.843262 TGATGATATTGCTCTTCCTACATTTTG 58.157 33.333 0.00 0.00 0.00 2.44
745 889 7.572523 TGATATTGCTCTTCCTACATTTTGG 57.427 36.000 0.00 0.00 0.00 3.28
746 890 6.547141 TGATATTGCTCTTCCTACATTTTGGG 59.453 38.462 0.00 0.00 0.00 4.12
747 891 3.806949 TGCTCTTCCTACATTTTGGGT 57.193 42.857 0.00 0.00 0.00 4.51
748 892 3.420893 TGCTCTTCCTACATTTTGGGTG 58.579 45.455 0.00 0.00 0.00 4.61
749 893 2.755103 GCTCTTCCTACATTTTGGGTGG 59.245 50.000 0.00 0.00 0.00 4.61
750 894 3.814316 GCTCTTCCTACATTTTGGGTGGT 60.814 47.826 0.00 0.00 0.00 4.16
751 895 4.407365 CTCTTCCTACATTTTGGGTGGTT 58.593 43.478 0.00 0.00 0.00 3.67
752 896 4.810345 TCTTCCTACATTTTGGGTGGTTT 58.190 39.130 0.00 0.00 0.00 3.27
753 897 4.586841 TCTTCCTACATTTTGGGTGGTTTG 59.413 41.667 0.00 0.00 0.00 2.93
754 898 3.235200 TCCTACATTTTGGGTGGTTTGG 58.765 45.455 0.00 0.00 0.00 3.28
755 899 3.117093 TCCTACATTTTGGGTGGTTTGGA 60.117 43.478 0.00 0.00 0.00 3.53
756 900 3.837731 CCTACATTTTGGGTGGTTTGGAT 59.162 43.478 0.00 0.00 0.00 3.41
757 901 4.081697 CCTACATTTTGGGTGGTTTGGATC 60.082 45.833 0.00 0.00 0.00 3.36
758 902 3.312890 ACATTTTGGGTGGTTTGGATCA 58.687 40.909 0.00 0.00 0.00 2.92
766 910 3.181476 GGGTGGTTTGGATCAATGTATGC 60.181 47.826 0.00 0.00 0.00 3.14
781 932 3.299503 TGTATGCTCACTCTCATAGCCA 58.700 45.455 0.00 0.00 35.33 4.75
786 937 2.547642 GCTCACTCTCATAGCCATGTCC 60.548 54.545 0.00 0.00 33.57 4.02
787 938 2.964464 CTCACTCTCATAGCCATGTCCT 59.036 50.000 0.00 0.00 33.57 3.85
788 939 2.961741 TCACTCTCATAGCCATGTCCTC 59.038 50.000 0.00 0.00 33.57 3.71
789 940 2.036992 CACTCTCATAGCCATGTCCTCC 59.963 54.545 0.00 0.00 33.57 4.30
790 941 2.090831 ACTCTCATAGCCATGTCCTCCT 60.091 50.000 0.00 0.00 33.57 3.69
828 997 2.892852 AGCCATGCTTTCTTTTACTGCA 59.107 40.909 0.00 0.00 33.89 4.41
829 998 2.989166 GCCATGCTTTCTTTTACTGCAC 59.011 45.455 0.00 0.00 36.44 4.57
835 1012 3.242608 GCTTTCTTTTACTGCACGTCACA 60.243 43.478 0.00 0.00 0.00 3.58
842 1019 0.668706 ACTGCACGTCACAGATGAGC 60.669 55.000 19.29 2.17 38.55 4.26
899 1081 4.752146 TCATGCAACTGACTGACTATCTG 58.248 43.478 0.00 0.00 0.00 2.90
900 1082 4.221482 TCATGCAACTGACTGACTATCTGT 59.779 41.667 0.00 0.00 0.00 3.41
901 1083 4.179926 TGCAACTGACTGACTATCTGTC 57.820 45.455 8.45 8.45 43.10 3.51
902 1084 3.829026 TGCAACTGACTGACTATCTGTCT 59.171 43.478 14.47 0.00 45.54 3.41
903 1085 4.172505 GCAACTGACTGACTATCTGTCTG 58.827 47.826 16.03 16.03 45.54 3.51
914 1096 6.418946 TGACTATCTGTCTGTCTGTCTGTAT 58.581 40.000 0.00 0.00 45.54 2.29
915 1097 6.317391 TGACTATCTGTCTGTCTGTCTGTATG 59.683 42.308 0.00 0.00 45.54 2.39
916 1098 6.418946 ACTATCTGTCTGTCTGTCTGTATGA 58.581 40.000 0.00 0.00 0.00 2.15
917 1099 5.574891 ATCTGTCTGTCTGTCTGTATGAC 57.425 43.478 0.00 0.00 45.54 3.06
944 1195 2.479837 GTGATGCCGTCGATTATCCAA 58.520 47.619 0.00 0.00 0.00 3.53
954 1205 4.209288 CGTCGATTATCCAACATTCTGTCC 59.791 45.833 0.00 0.00 0.00 4.02
968 1219 1.550524 TCTGTCCGTTATGCTGAAGCT 59.449 47.619 3.61 0.00 42.66 3.74
973 1224 1.362768 CGTTATGCTGAAGCTGCTCA 58.637 50.000 1.00 2.06 42.66 4.26
1209 1463 1.448497 GGACCACTTCGTGTTCCCA 59.552 57.895 0.00 0.00 38.86 4.37
1254 1508 4.500116 GAGACCGCCCTGCTCGAC 62.500 72.222 0.00 0.00 0.00 4.20
1266 1520 3.522731 CTCGACCCGCCTCAGGAG 61.523 72.222 0.00 0.00 0.00 3.69
1302 1556 2.861006 GCCGGCTTCAAGAACGTC 59.139 61.111 22.15 0.00 0.00 4.34
1308 1562 1.566018 GCTTCAAGAACGTCGGTGGG 61.566 60.000 0.00 0.00 0.00 4.61
1368 1622 2.266055 GGGAAGAGCCTGTCGGTG 59.734 66.667 0.00 0.00 36.66 4.94
1395 1649 1.875576 GCCGAGATGATGATGGGTGAC 60.876 57.143 0.00 0.00 0.00 3.67
1424 1678 2.796483 TTCCACGCCCAAGATGACGG 62.796 60.000 0.00 0.00 0.00 4.79
1458 1712 5.333875 CGTTGTCCATGATGATGATGATGAC 60.334 44.000 0.00 0.00 0.00 3.06
1484 1741 0.108424 GACAAGTCTGATGCGCCTCT 60.108 55.000 13.93 0.00 0.00 3.69
1485 1742 0.390866 ACAAGTCTGATGCGCCTCTG 60.391 55.000 13.93 13.07 0.00 3.35
1486 1743 1.088340 CAAGTCTGATGCGCCTCTGG 61.088 60.000 17.03 9.12 0.00 3.86
1581 1850 1.566298 ATGACCAGGCCAAGGAGACC 61.566 60.000 20.01 7.31 0.00 3.85
1602 1871 1.274703 ATCATCTCTGGGGTGCGGTT 61.275 55.000 0.00 0.00 0.00 4.44
1753 2024 9.862371 ACTATGATTCATATTTCTATGGTCGAC 57.138 33.333 7.13 7.13 36.23 4.20
1767 2038 9.476202 TTCTATGGTCGACTCAATATTGTATTG 57.524 33.333 16.46 8.55 0.00 1.90
1771 2049 6.018016 TGGTCGACTCAATATTGTATTGCATG 60.018 38.462 16.46 0.00 0.00 4.06
1807 2087 7.690952 ATATCCAGTCTATCTCTTTCCGTAC 57.309 40.000 0.00 0.00 0.00 3.67
1846 2130 8.771920 TTACAGTTGTTGAATATGGTCAGTAG 57.228 34.615 0.00 0.00 0.00 2.57
1883 2177 3.364764 GCTTGCTCTGTTGCTTTACTCTG 60.365 47.826 0.00 0.00 0.00 3.35
1887 2192 3.556004 GCTCTGTTGCTTTACTCTGTCCT 60.556 47.826 0.00 0.00 0.00 3.85
1888 2193 4.241681 CTCTGTTGCTTTACTCTGTCCTC 58.758 47.826 0.00 0.00 0.00 3.71
1889 2194 3.641436 TCTGTTGCTTTACTCTGTCCTCA 59.359 43.478 0.00 0.00 0.00 3.86
1890 2195 3.993081 CTGTTGCTTTACTCTGTCCTCAG 59.007 47.826 0.00 0.00 42.54 3.35
1891 2196 2.739379 GTTGCTTTACTCTGTCCTCAGC 59.261 50.000 0.00 0.00 41.10 4.26
1892 2197 1.970640 TGCTTTACTCTGTCCTCAGCA 59.029 47.619 0.00 0.00 41.10 4.41
1893 2198 2.289072 TGCTTTACTCTGTCCTCAGCAC 60.289 50.000 0.00 0.00 41.10 4.40
1894 2199 2.600731 CTTTACTCTGTCCTCAGCACG 58.399 52.381 0.00 0.00 41.10 5.34
1895 2200 1.617322 TTACTCTGTCCTCAGCACGT 58.383 50.000 0.00 0.00 41.10 4.49
1896 2201 0.881796 TACTCTGTCCTCAGCACGTG 59.118 55.000 12.28 12.28 41.10 4.49
1897 2202 1.735920 CTCTGTCCTCAGCACGTGC 60.736 63.158 32.79 32.79 41.10 5.34
1917 2222 4.513318 GTGCTCAGCTTACTGTTTCTTTCT 59.487 41.667 0.00 0.00 44.77 2.52
1929 2234 6.217294 ACTGTTTCTTTCTGCAGTACTAGAC 58.783 40.000 14.67 8.13 40.00 2.59
2134 2439 7.457024 TTCTTTGTTAATAAGTTAGTGGGGC 57.543 36.000 0.00 0.00 0.00 5.80
2191 2497 5.979517 GGGCATGATTAAAATTGAGCAGTAC 59.020 40.000 0.00 0.00 0.00 2.73
2517 2828 8.785329 TTTAAGTATTGTCACTGATGTGCATA 57.215 30.769 0.00 0.00 43.49 3.14
2530 2841 6.151648 ACTGATGTGCATATTACTGTTGCTTT 59.848 34.615 0.00 0.00 37.28 3.51
2575 3060 3.181434 TGTTACATCTCCTGGGCAGTTTT 60.181 43.478 0.00 0.00 0.00 2.43
2634 3119 5.107645 GCAGGGCGTAGTTTTTGTTTAAATG 60.108 40.000 0.00 0.00 0.00 2.32
2672 3157 3.928375 GTGGCATGTTTAAAATGAGCAGG 59.072 43.478 0.00 0.47 0.00 4.85
2686 3177 2.224378 TGAGCAGGAGAAGAACTGTTGG 60.224 50.000 0.00 0.00 37.07 3.77
2690 3181 3.055094 GCAGGAGAAGAACTGTTGGGATA 60.055 47.826 0.00 0.00 37.07 2.59
2691 3182 4.764172 CAGGAGAAGAACTGTTGGGATAG 58.236 47.826 0.00 0.00 0.00 2.08
2692 3183 3.198853 AGGAGAAGAACTGTTGGGATAGC 59.801 47.826 0.00 0.00 0.00 2.97
2693 3184 3.198853 GGAGAAGAACTGTTGGGATAGCT 59.801 47.826 0.00 0.00 0.00 3.32
2694 3185 4.187694 GAGAAGAACTGTTGGGATAGCTG 58.812 47.826 0.00 0.00 0.00 4.24
2695 3186 3.840666 AGAAGAACTGTTGGGATAGCTGA 59.159 43.478 0.00 0.00 0.00 4.26
2696 3187 3.618690 AGAACTGTTGGGATAGCTGAC 57.381 47.619 0.00 0.00 0.00 3.51
2697 3188 3.177228 AGAACTGTTGGGATAGCTGACT 58.823 45.455 0.00 0.00 0.00 3.41
2698 3189 4.353777 AGAACTGTTGGGATAGCTGACTA 58.646 43.478 0.00 0.00 0.00 2.59
2699 3190 4.160626 AGAACTGTTGGGATAGCTGACTAC 59.839 45.833 0.00 0.00 0.00 2.73
2700 3191 3.714144 ACTGTTGGGATAGCTGACTACT 58.286 45.455 0.00 0.00 0.00 2.57
2701 3192 4.097418 ACTGTTGGGATAGCTGACTACTT 58.903 43.478 0.00 0.00 0.00 2.24
2702 3193 5.269991 ACTGTTGGGATAGCTGACTACTTA 58.730 41.667 0.00 0.00 0.00 2.24
2703 3194 5.127356 ACTGTTGGGATAGCTGACTACTTAC 59.873 44.000 0.00 0.00 0.00 2.34
2704 3195 4.097437 TGTTGGGATAGCTGACTACTTACG 59.903 45.833 0.00 0.00 0.00 3.18
2705 3196 4.160642 TGGGATAGCTGACTACTTACGA 57.839 45.455 0.00 0.00 0.00 3.43
2706 3197 4.529897 TGGGATAGCTGACTACTTACGAA 58.470 43.478 0.00 0.00 0.00 3.85
2707 3198 4.951715 TGGGATAGCTGACTACTTACGAAA 59.048 41.667 0.00 0.00 0.00 3.46
2708 3199 5.597182 TGGGATAGCTGACTACTTACGAAAT 59.403 40.000 0.00 0.00 0.00 2.17
2709 3200 6.097839 TGGGATAGCTGACTACTTACGAAATT 59.902 38.462 0.00 0.00 0.00 1.82
2710 3201 6.421202 GGGATAGCTGACTACTTACGAAATTG 59.579 42.308 0.00 0.00 0.00 2.32
2711 3202 6.979238 GGATAGCTGACTACTTACGAAATTGT 59.021 38.462 0.00 0.00 0.00 2.71
2712 3203 7.043325 GGATAGCTGACTACTTACGAAATTGTG 60.043 40.741 0.00 0.00 0.00 3.33
2713 3204 5.779922 AGCTGACTACTTACGAAATTGTGA 58.220 37.500 0.00 0.00 0.00 3.58
2714 3205 5.634020 AGCTGACTACTTACGAAATTGTGAC 59.366 40.000 0.00 0.00 0.00 3.67
2724 3215 5.348418 ACGAAATTGTGACTTGTGAGATG 57.652 39.130 0.00 0.00 0.00 2.90
2808 3299 7.282585 TGCTTCATTTAGCATGACCTTAGTAT 58.717 34.615 0.00 0.00 45.72 2.12
2853 3344 5.048991 AGTTGCTATTTTTACCCACGTTCAG 60.049 40.000 0.00 0.00 0.00 3.02
2907 3398 6.077838 CGTTTACAGCAAAGTAGGATTTGAC 58.922 40.000 3.49 0.00 41.71 3.18
2917 3408 4.770795 AGTAGGATTTGACCCAGATTTCG 58.229 43.478 0.00 0.00 0.00 3.46
2993 3484 6.795399 TCACTGATTTTTCTGAACTTGGAAC 58.205 36.000 0.00 0.00 0.00 3.62
3134 3634 2.263077 GATGTGAGTGGTTAGTCTGCG 58.737 52.381 0.00 0.00 0.00 5.18
3225 3725 7.449704 AGTTTCTCTCTTTTGCAACATTAGGAT 59.550 33.333 0.00 0.00 0.00 3.24
3306 3807 8.926710 CAGTGGAATACTCCGTAATATCATTTC 58.073 37.037 0.00 0.00 45.85 2.17
3307 3808 8.871125 AGTGGAATACTCCGTAATATCATTTCT 58.129 33.333 0.00 0.00 45.85 2.52
3354 3856 8.592105 AATTGGTTCTTGTCATTAACATTGTG 57.408 30.769 0.00 0.00 37.82 3.33
3366 3868 9.373750 GTCATTAACATTGTGAACATATCATCG 57.626 33.333 0.00 0.00 40.97 3.84
3368 3870 9.373750 CATTAACATTGTGAACATATCATCGTC 57.626 33.333 0.00 0.00 40.97 4.20
3378 3880 9.794685 GTGAACATATCATCGTCAGTATCATAT 57.205 33.333 0.00 0.00 40.97 1.78
3470 4079 5.235516 CGAAACATACAGTTCACCTAGGTT 58.764 41.667 13.15 0.00 40.26 3.50
3647 4290 5.000012 AGACGATAATTCCTGATATCCGC 58.000 43.478 0.00 0.00 0.00 5.54
3688 4332 3.088532 TGTTTTTGTTGCTGACTGAGGT 58.911 40.909 0.00 0.00 0.00 3.85
3702 4346 4.192317 GACTGAGGTTCTGTTCTGTTGTT 58.808 43.478 0.00 0.00 0.00 2.83
3708 4352 5.741011 AGGTTCTGTTCTGTTGTTCAGTTA 58.259 37.500 0.00 0.00 43.97 2.24
3721 4365 6.128035 TGTTGTTCAGTTAATGATCCAATCCG 60.128 38.462 0.00 0.00 37.89 4.18
3723 4367 6.176896 TGTTCAGTTAATGATCCAATCCGAA 58.823 36.000 0.00 0.00 37.89 4.30
3724 4368 6.828273 TGTTCAGTTAATGATCCAATCCGAAT 59.172 34.615 0.00 0.00 37.89 3.34
3725 4369 7.339212 TGTTCAGTTAATGATCCAATCCGAATT 59.661 33.333 0.00 0.00 37.89 2.17
3776 4420 5.158101 TCTTCGTCGATACAATCTCTGAC 57.842 43.478 0.00 0.00 0.00 3.51
3936 4582 5.278463 GCTTGTGAGATGCCAAAGTTTCTTA 60.278 40.000 0.00 0.00 0.00 2.10
4076 4757 7.572523 ATGATGTGAAATTCATGATAACCGT 57.427 32.000 0.00 0.00 31.51 4.83
4085 4766 4.153958 TCATGATAACCGTGTTTGTTGC 57.846 40.909 0.00 0.00 33.53 4.17
4094 4775 0.457681 GTGTTTGTTGCCGTGCTTGT 60.458 50.000 0.00 0.00 0.00 3.16
4104 4785 2.253603 GCCGTGCTTGTGAATGAATTC 58.746 47.619 0.00 0.00 37.31 2.17
4105 4786 2.351641 GCCGTGCTTGTGAATGAATTCA 60.352 45.455 11.26 11.26 43.94 2.57
4106 4787 3.495193 CCGTGCTTGTGAATGAATTCAG 58.505 45.455 14.54 0.00 46.44 3.02
4134 4815 6.280643 GGAACCTATTTTGCTTTTGTGTTCT 58.719 36.000 0.00 0.00 32.37 3.01
4136 4817 6.463995 ACCTATTTTGCTTTTGTGTTCTCA 57.536 33.333 0.00 0.00 0.00 3.27
4137 4818 6.872920 ACCTATTTTGCTTTTGTGTTCTCAA 58.127 32.000 0.00 0.00 0.00 3.02
4146 4827 3.781079 TTGTGTTCTCAACAAAGCTGG 57.219 42.857 0.00 0.00 44.16 4.85
4151 4832 3.130340 TGTTCTCAACAAAGCTGGGTTTC 59.870 43.478 0.77 0.00 38.72 2.78
4152 4833 2.306847 TCTCAACAAAGCTGGGTTTCC 58.693 47.619 0.77 0.00 0.00 3.13
4153 4834 2.091885 TCTCAACAAAGCTGGGTTTCCT 60.092 45.455 0.77 0.00 0.00 3.36
4154 4835 3.137544 TCTCAACAAAGCTGGGTTTCCTA 59.862 43.478 0.77 0.00 0.00 2.94
4156 4837 4.479158 TCAACAAAGCTGGGTTTCCTATT 58.521 39.130 0.77 0.00 0.00 1.73
4157 4838 4.898861 TCAACAAAGCTGGGTTTCCTATTT 59.101 37.500 0.77 0.00 0.00 1.40
4159 4840 5.213891 ACAAAGCTGGGTTTCCTATTTTG 57.786 39.130 0.00 0.00 35.39 2.44
4161 4842 3.175438 AGCTGGGTTTCCTATTTTGCT 57.825 42.857 0.00 0.00 0.00 3.91
4162 4843 3.510459 AGCTGGGTTTCCTATTTTGCTT 58.490 40.909 0.00 0.00 0.00 3.91
4163 4844 3.903714 AGCTGGGTTTCCTATTTTGCTTT 59.096 39.130 0.00 0.00 0.00 3.51
4164 4845 4.347876 AGCTGGGTTTCCTATTTTGCTTTT 59.652 37.500 0.00 0.00 0.00 2.27
4165 4846 4.452114 GCTGGGTTTCCTATTTTGCTTTTG 59.548 41.667 0.00 0.00 0.00 2.44
4207 4918 5.347620 AATGCATTTCATACATTGCCAGT 57.652 34.783 5.99 0.00 34.33 4.00
4213 4924 2.892374 TCATACATTGCCAGTGTCTCG 58.108 47.619 0.00 0.00 0.00 4.04
4331 5045 8.026607 TGTCTTGTTTTGAGAAAAACTGTTAGG 58.973 33.333 13.46 0.00 41.78 2.69
4341 5055 6.071320 AGAAAAACTGTTAGGCCAAATCTCT 58.929 36.000 5.01 0.00 0.00 3.10
4348 5062 6.434340 ACTGTTAGGCCAAATCTCTTTTTAGG 59.566 38.462 5.01 0.00 0.00 2.69
4426 5143 9.378551 TGTGGTGAATTTTCTGACAGTATATAC 57.621 33.333 4.60 4.60 0.00 1.47
4445 5191 5.836821 ATACGAGCTGACTGTCTTTATCA 57.163 39.130 9.51 0.00 0.00 2.15
4471 5217 9.613428 ATCGAAAATCCATATACTTTCACTGAA 57.387 29.630 0.00 0.00 0.00 3.02
4602 5352 7.440523 ACTTGAGACTATTCCAACAAACATC 57.559 36.000 0.00 0.00 0.00 3.06
4608 5358 7.106239 AGACTATTCCAACAAACATCCTACAG 58.894 38.462 0.00 0.00 0.00 2.74
4610 5360 7.633789 ACTATTCCAACAAACATCCTACAGAT 58.366 34.615 0.00 0.00 34.66 2.90
4679 5431 7.279758 ACAAAAACCCTGTCAACAAAACATATG 59.720 33.333 0.00 0.00 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 65 2.318908 CAGAGGAGATGGAGGAGAAGG 58.681 57.143 0.00 0.00 0.00 3.46
53 68 1.063341 CACCAGAGGAGATGGAGGAGA 60.063 57.143 0.00 0.00 40.51 3.71
56 71 0.829333 CACACCAGAGGAGATGGAGG 59.171 60.000 0.00 0.00 40.51 4.30
57 72 0.829333 CCACACCAGAGGAGATGGAG 59.171 60.000 0.00 0.00 40.51 3.86
61 76 1.566211 CAGACCACACCAGAGGAGAT 58.434 55.000 0.00 0.00 0.00 2.75
71 86 0.381801 CAAGCACAACCAGACCACAC 59.618 55.000 0.00 0.00 0.00 3.82
78 93 2.353839 GCGCACAAGCACAACCAG 60.354 61.111 0.30 0.00 42.27 4.00
79 94 3.898509 GGCGCACAAGCACAACCA 61.899 61.111 10.83 0.00 42.27 3.67
112 127 4.596585 GGGTGGGTGGGTGTGTGG 62.597 72.222 0.00 0.00 0.00 4.17
114 129 3.816090 GTGGGTGGGTGGGTGTGT 61.816 66.667 0.00 0.00 0.00 3.72
115 130 4.947147 CGTGGGTGGGTGGGTGTG 62.947 72.222 0.00 0.00 0.00 3.82
117 132 4.636435 GACGTGGGTGGGTGGGTG 62.636 72.222 0.00 0.00 0.00 4.61
118 133 4.892291 AGACGTGGGTGGGTGGGT 62.892 66.667 0.00 0.00 0.00 4.51
119 134 4.016706 GAGACGTGGGTGGGTGGG 62.017 72.222 0.00 0.00 0.00 4.61
120 135 4.016706 GGAGACGTGGGTGGGTGG 62.017 72.222 0.00 0.00 0.00 4.61
121 136 2.923035 AGGAGACGTGGGTGGGTG 60.923 66.667 0.00 0.00 0.00 4.61
122 137 2.603776 GAGGAGACGTGGGTGGGT 60.604 66.667 0.00 0.00 0.00 4.51
123 138 3.391382 GGAGGAGACGTGGGTGGG 61.391 72.222 0.00 0.00 0.00 4.61
124 139 3.760035 CGGAGGAGACGTGGGTGG 61.760 72.222 0.00 0.00 0.00 4.61
125 140 4.436998 GCGGAGGAGACGTGGGTG 62.437 72.222 0.00 0.00 0.00 4.61
128 143 4.477975 GTCGCGGAGGAGACGTGG 62.478 72.222 6.13 0.00 41.72 4.94
129 144 4.477975 GGTCGCGGAGGAGACGTG 62.478 72.222 6.13 0.00 43.07 4.49
131 146 3.685214 CTTGGTCGCGGAGGAGACG 62.685 68.421 6.13 0.00 43.07 4.18
132 147 1.874345 TTCTTGGTCGCGGAGGAGAC 61.874 60.000 6.13 0.00 41.63 3.36
133 148 1.183030 TTTCTTGGTCGCGGAGGAGA 61.183 55.000 6.13 2.46 0.00 3.71
135 150 1.183030 TCTTTCTTGGTCGCGGAGGA 61.183 55.000 6.13 0.00 0.00 3.71
136 151 0.320421 TTCTTTCTTGGTCGCGGAGG 60.320 55.000 6.13 0.00 0.00 4.30
138 153 2.073816 GATTTCTTTCTTGGTCGCGGA 58.926 47.619 6.13 0.00 0.00 5.54
139 154 1.130561 GGATTTCTTTCTTGGTCGCGG 59.869 52.381 6.13 0.00 0.00 6.46
140 155 1.130561 GGGATTTCTTTCTTGGTCGCG 59.869 52.381 0.00 0.00 0.00 5.87
141 156 2.437413 AGGGATTTCTTTCTTGGTCGC 58.563 47.619 0.00 0.00 0.00 5.19
142 157 3.440522 GGAAGGGATTTCTTTCTTGGTCG 59.559 47.826 0.00 0.00 36.03 4.79
144 159 4.749048 AGGAAGGGATTTCTTTCTTGGT 57.251 40.909 0.00 0.00 36.03 3.67
145 160 4.464244 GGAAGGAAGGGATTTCTTTCTTGG 59.536 45.833 3.17 0.00 45.93 3.61
146 161 5.328565 AGGAAGGAAGGGATTTCTTTCTTG 58.671 41.667 3.17 0.00 45.93 3.02
147 162 5.607168 AGGAAGGAAGGGATTTCTTTCTT 57.393 39.130 10.31 0.00 45.93 2.52
148 163 5.517477 GGAAGGAAGGAAGGGATTTCTTTCT 60.517 44.000 10.31 0.00 45.93 2.52
149 164 4.707448 GGAAGGAAGGAAGGGATTTCTTTC 59.293 45.833 3.90 3.90 45.94 2.62
150 165 4.358310 AGGAAGGAAGGAAGGGATTTCTTT 59.642 41.667 0.00 0.00 37.76 2.52
151 166 3.926020 AGGAAGGAAGGAAGGGATTTCTT 59.074 43.478 0.00 0.00 36.03 2.52
153 168 4.274147 GAAGGAAGGAAGGAAGGGATTTC 58.726 47.826 0.00 0.00 34.93 2.17
154 169 3.011821 GGAAGGAAGGAAGGAAGGGATTT 59.988 47.826 0.00 0.00 0.00 2.17
155 170 2.583101 GGAAGGAAGGAAGGAAGGGATT 59.417 50.000 0.00 0.00 0.00 3.01
156 171 2.209758 GGAAGGAAGGAAGGAAGGGAT 58.790 52.381 0.00 0.00 0.00 3.85
157 172 1.154434 AGGAAGGAAGGAAGGAAGGGA 59.846 52.381 0.00 0.00 0.00 4.20
158 173 1.675007 AGGAAGGAAGGAAGGAAGGG 58.325 55.000 0.00 0.00 0.00 3.95
159 174 2.025793 GGAAGGAAGGAAGGAAGGAAGG 60.026 54.545 0.00 0.00 0.00 3.46
160 175 2.916269 AGGAAGGAAGGAAGGAAGGAAG 59.084 50.000 0.00 0.00 0.00 3.46
161 176 3.005529 AGGAAGGAAGGAAGGAAGGAA 57.994 47.619 0.00 0.00 0.00 3.36
183 241 9.159364 CAATCAATCATACATACATACTCAGGG 57.841 37.037 0.00 0.00 0.00 4.45
184 242 9.933723 TCAATCAATCATACATACATACTCAGG 57.066 33.333 0.00 0.00 0.00 3.86
198 258 8.508875 CACATCCGAATCAATCAATCAATCATA 58.491 33.333 0.00 0.00 0.00 2.15
199 259 7.368059 CACATCCGAATCAATCAATCAATCAT 58.632 34.615 0.00 0.00 0.00 2.45
201 261 5.628193 GCACATCCGAATCAATCAATCAATC 59.372 40.000 0.00 0.00 0.00 2.67
202 262 5.301045 AGCACATCCGAATCAATCAATCAAT 59.699 36.000 0.00 0.00 0.00 2.57
203 263 4.641541 AGCACATCCGAATCAATCAATCAA 59.358 37.500 0.00 0.00 0.00 2.57
206 266 4.201657 TCAGCACATCCGAATCAATCAAT 58.798 39.130 0.00 0.00 0.00 2.57
207 267 3.608796 TCAGCACATCCGAATCAATCAA 58.391 40.909 0.00 0.00 0.00 2.57
210 270 2.092753 ACCTCAGCACATCCGAATCAAT 60.093 45.455 0.00 0.00 0.00 2.57
211 271 1.278985 ACCTCAGCACATCCGAATCAA 59.721 47.619 0.00 0.00 0.00 2.57
214 274 0.179000 GGACCTCAGCACATCCGAAT 59.821 55.000 0.00 0.00 0.00 3.34
215 275 1.596934 GGACCTCAGCACATCCGAA 59.403 57.895 0.00 0.00 0.00 4.30
216 276 3.298958 GGACCTCAGCACATCCGA 58.701 61.111 0.00 0.00 0.00 4.55
218 278 1.153549 GACGGACCTCAGCACATCC 60.154 63.158 0.00 0.00 0.00 3.51
219 279 1.517257 CGACGGACCTCAGCACATC 60.517 63.158 0.00 0.00 0.00 3.06
223 283 2.697761 GCTACGACGGACCTCAGCA 61.698 63.158 0.00 0.00 0.00 4.41
225 285 1.749638 AGGCTACGACGGACCTCAG 60.750 63.158 0.00 0.00 0.00 3.35
227 287 1.102222 ATCAGGCTACGACGGACCTC 61.102 60.000 0.00 0.00 0.00 3.85
228 288 1.076923 ATCAGGCTACGACGGACCT 60.077 57.895 0.00 0.00 0.00 3.85
229 289 1.065928 CATCAGGCTACGACGGACC 59.934 63.158 0.00 0.00 0.00 4.46
238 298 4.756642 GCACATAGTTATTGCATCAGGCTA 59.243 41.667 0.00 0.00 45.15 3.93
239 299 3.567164 GCACATAGTTATTGCATCAGGCT 59.433 43.478 0.00 0.00 45.15 4.58
240 300 3.304928 GGCACATAGTTATTGCATCAGGC 60.305 47.826 0.00 0.00 45.13 4.85
241 301 3.884693 TGGCACATAGTTATTGCATCAGG 59.115 43.478 0.00 0.00 38.04 3.86
282 404 1.836802 CTCAGGGAGGGAGGAGAAAAG 59.163 57.143 0.00 0.00 0.00 2.27
283 405 1.152271 ACTCAGGGAGGGAGGAGAAAA 59.848 52.381 0.00 0.00 36.70 2.29
285 407 0.336737 GACTCAGGGAGGGAGGAGAA 59.663 60.000 0.00 0.00 36.70 2.87
286 408 1.585651 GGACTCAGGGAGGGAGGAGA 61.586 65.000 0.00 0.00 36.70 3.71
287 409 1.075600 GGACTCAGGGAGGGAGGAG 60.076 68.421 0.00 0.00 36.70 3.69
288 410 2.637640 GGGACTCAGGGAGGGAGGA 61.638 68.421 0.00 0.00 36.70 3.71
317 439 8.257602 AGAGCGGACATAGATAGATAGATAGA 57.742 38.462 0.00 0.00 0.00 1.98
329 451 2.145397 AACCAGAGAGCGGACATAGA 57.855 50.000 0.00 0.00 0.00 1.98
330 452 2.544685 CAAACCAGAGAGCGGACATAG 58.455 52.381 0.00 0.00 0.00 2.23
331 453 1.207089 CCAAACCAGAGAGCGGACATA 59.793 52.381 0.00 0.00 0.00 2.29
332 454 0.036010 CCAAACCAGAGAGCGGACAT 60.036 55.000 0.00 0.00 0.00 3.06
333 455 1.371183 CCAAACCAGAGAGCGGACA 59.629 57.895 0.00 0.00 0.00 4.02
334 456 0.250338 AACCAAACCAGAGAGCGGAC 60.250 55.000 0.00 0.00 0.00 4.79
335 457 0.472471 AAACCAAACCAGAGAGCGGA 59.528 50.000 0.00 0.00 0.00 5.54
336 458 0.593128 CAAACCAAACCAGAGAGCGG 59.407 55.000 0.00 0.00 0.00 5.52
337 459 0.040067 GCAAACCAAACCAGAGAGCG 60.040 55.000 0.00 0.00 0.00 5.03
338 460 1.322442 AGCAAACCAAACCAGAGAGC 58.678 50.000 0.00 0.00 0.00 4.09
339 461 4.389374 TCTTAGCAAACCAAACCAGAGAG 58.611 43.478 0.00 0.00 0.00 3.20
340 462 4.141482 ACTCTTAGCAAACCAAACCAGAGA 60.141 41.667 0.00 0.00 32.48 3.10
341 463 4.137543 ACTCTTAGCAAACCAAACCAGAG 58.862 43.478 0.00 0.00 34.02 3.35
342 464 4.134563 GACTCTTAGCAAACCAAACCAGA 58.865 43.478 0.00 0.00 0.00 3.86
343 465 3.882888 TGACTCTTAGCAAACCAAACCAG 59.117 43.478 0.00 0.00 0.00 4.00
344 466 3.892284 TGACTCTTAGCAAACCAAACCA 58.108 40.909 0.00 0.00 0.00 3.67
345 467 5.938125 TCTATGACTCTTAGCAAACCAAACC 59.062 40.000 0.00 0.00 0.00 3.27
346 468 7.334421 TCATCTATGACTCTTAGCAAACCAAAC 59.666 37.037 0.00 0.00 0.00 2.93
356 478 6.252233 TCCCCTCATCATCTATGACTCTTAG 58.748 44.000 0.00 0.00 39.77 2.18
358 480 5.085275 TCCCCTCATCATCTATGACTCTT 57.915 43.478 0.00 0.00 39.77 2.85
366 488 1.557681 TCCCCTCCCCTCATCATCTA 58.442 55.000 0.00 0.00 0.00 1.98
368 490 1.632920 GAATCCCCTCCCCTCATCATC 59.367 57.143 0.00 0.00 0.00 2.92
372 494 2.089408 TGTATGAATCCCCTCCCCTCAT 60.089 50.000 0.00 0.00 0.00 2.90
409 545 9.322769 AGGGAGTAGAAAGAAACAGATAAGTAA 57.677 33.333 0.00 0.00 0.00 2.24
410 546 8.896722 AGGGAGTAGAAAGAAACAGATAAGTA 57.103 34.615 0.00 0.00 0.00 2.24
411 547 7.093245 GGAGGGAGTAGAAAGAAACAGATAAGT 60.093 40.741 0.00 0.00 0.00 2.24
412 548 7.269316 GGAGGGAGTAGAAAGAAACAGATAAG 58.731 42.308 0.00 0.00 0.00 1.73
413 549 6.156429 GGGAGGGAGTAGAAAGAAACAGATAA 59.844 42.308 0.00 0.00 0.00 1.75
415 551 4.471747 GGGAGGGAGTAGAAAGAAACAGAT 59.528 45.833 0.00 0.00 0.00 2.90
418 554 3.870559 AGGGAGGGAGTAGAAAGAAACA 58.129 45.455 0.00 0.00 0.00 2.83
419 555 4.532916 AGAAGGGAGGGAGTAGAAAGAAAC 59.467 45.833 0.00 0.00 0.00 2.78
421 557 4.421574 AGAAGGGAGGGAGTAGAAAGAA 57.578 45.455 0.00 0.00 0.00 2.52
423 559 6.622427 TTTTAGAAGGGAGGGAGTAGAAAG 57.378 41.667 0.00 0.00 0.00 2.62
425 561 7.659214 TCTATTTTAGAAGGGAGGGAGTAGAA 58.341 38.462 0.00 0.00 0.00 2.10
427 563 9.603189 TTATCTATTTTAGAAGGGAGGGAGTAG 57.397 37.037 0.00 0.00 38.50 2.57
428 564 9.962835 TTTATCTATTTTAGAAGGGAGGGAGTA 57.037 33.333 0.00 0.00 38.50 2.59
430 566 9.785982 CTTTTATCTATTTTAGAAGGGAGGGAG 57.214 37.037 0.00 0.00 38.50 4.30
431 567 8.218488 GCTTTTATCTATTTTAGAAGGGAGGGA 58.782 37.037 0.00 0.00 38.50 4.20
432 568 8.221251 AGCTTTTATCTATTTTAGAAGGGAGGG 58.779 37.037 0.00 0.00 38.50 4.30
433 569 9.634021 AAGCTTTTATCTATTTTAGAAGGGAGG 57.366 33.333 0.00 0.00 38.50 4.30
442 578 9.936759 CCCCAAACAAAGCTTTTATCTATTTTA 57.063 29.630 9.53 0.00 0.00 1.52
443 579 8.655901 TCCCCAAACAAAGCTTTTATCTATTTT 58.344 29.630 9.53 0.00 0.00 1.82
444 580 8.201242 TCCCCAAACAAAGCTTTTATCTATTT 57.799 30.769 9.53 1.27 0.00 1.40
445 581 7.790782 TCCCCAAACAAAGCTTTTATCTATT 57.209 32.000 9.53 0.00 0.00 1.73
446 582 7.790782 TTCCCCAAACAAAGCTTTTATCTAT 57.209 32.000 9.53 0.00 0.00 1.98
447 583 7.507616 TCTTTCCCCAAACAAAGCTTTTATCTA 59.492 33.333 9.53 0.00 30.84 1.98
448 584 6.326323 TCTTTCCCCAAACAAAGCTTTTATCT 59.674 34.615 9.53 0.00 30.84 1.98
449 585 6.521162 TCTTTCCCCAAACAAAGCTTTTATC 58.479 36.000 9.53 0.00 30.84 1.75
450 586 6.493189 TCTTTCCCCAAACAAAGCTTTTAT 57.507 33.333 9.53 0.00 30.84 1.40
451 587 5.941555 TCTTTCCCCAAACAAAGCTTTTA 57.058 34.783 9.53 0.00 30.84 1.52
452 588 4.835284 TCTTTCCCCAAACAAAGCTTTT 57.165 36.364 9.53 0.00 30.84 2.27
453 589 4.835284 TTCTTTCCCCAAACAAAGCTTT 57.165 36.364 5.69 5.69 30.84 3.51
454 590 4.835284 TTTCTTTCCCCAAACAAAGCTT 57.165 36.364 0.00 0.00 30.84 3.74
455 591 4.444733 CCATTTCTTTCCCCAAACAAAGCT 60.445 41.667 0.00 0.00 30.84 3.74
456 592 3.814842 CCATTTCTTTCCCCAAACAAAGC 59.185 43.478 0.00 0.00 30.84 3.51
457 593 5.289083 TCCATTTCTTTCCCCAAACAAAG 57.711 39.130 0.00 0.00 0.00 2.77
458 594 5.903198 ATCCATTTCTTTCCCCAAACAAA 57.097 34.783 0.00 0.00 0.00 2.83
459 595 6.959366 AGATATCCATTTCTTTCCCCAAACAA 59.041 34.615 0.00 0.00 0.00 2.83
460 596 6.502138 AGATATCCATTTCTTTCCCCAAACA 58.498 36.000 0.00 0.00 0.00 2.83
461 597 6.836007 AGAGATATCCATTTCTTTCCCCAAAC 59.164 38.462 0.00 0.00 0.00 2.93
462 598 6.835488 CAGAGATATCCATTTCTTTCCCCAAA 59.165 38.462 0.00 0.00 0.00 3.28
463 599 6.068853 ACAGAGATATCCATTTCTTTCCCCAA 60.069 38.462 0.00 0.00 0.00 4.12
464 600 5.433051 ACAGAGATATCCATTTCTTTCCCCA 59.567 40.000 0.00 0.00 0.00 4.96
465 601 5.946486 ACAGAGATATCCATTTCTTTCCCC 58.054 41.667 0.00 0.00 0.00 4.81
466 602 7.682981 GCAAACAGAGATATCCATTTCTTTCCC 60.683 40.741 0.00 0.00 0.00 3.97
467 603 7.067981 AGCAAACAGAGATATCCATTTCTTTCC 59.932 37.037 0.00 0.00 0.00 3.13
468 604 7.994194 AGCAAACAGAGATATCCATTTCTTTC 58.006 34.615 0.00 0.00 0.00 2.62
469 605 7.951347 AGCAAACAGAGATATCCATTTCTTT 57.049 32.000 0.00 0.00 0.00 2.52
470 606 7.613022 TCAAGCAAACAGAGATATCCATTTCTT 59.387 33.333 0.00 0.37 0.00 2.52
471 607 7.114754 TCAAGCAAACAGAGATATCCATTTCT 58.885 34.615 0.00 0.00 0.00 2.52
472 608 7.325660 TCAAGCAAACAGAGATATCCATTTC 57.674 36.000 0.00 0.00 0.00 2.17
473 609 7.893124 ATCAAGCAAACAGAGATATCCATTT 57.107 32.000 0.00 0.00 0.00 2.32
474 610 8.435187 TCTATCAAGCAAACAGAGATATCCATT 58.565 33.333 0.00 0.00 0.00 3.16
475 611 7.971201 TCTATCAAGCAAACAGAGATATCCAT 58.029 34.615 0.00 0.00 0.00 3.41
476 612 7.365497 TCTATCAAGCAAACAGAGATATCCA 57.635 36.000 0.00 0.00 0.00 3.41
477 613 8.845413 ATTCTATCAAGCAAACAGAGATATCC 57.155 34.615 0.00 0.00 0.00 2.59
499 635 9.746457 AGGAAAGCAGGGATTAATAATCTATTC 57.254 33.333 12.19 8.03 38.01 1.75
504 640 9.534565 GAAAAAGGAAAGCAGGGATTAATAATC 57.465 33.333 4.47 4.47 37.17 1.75
512 651 5.604231 AGAAAAGAAAAAGGAAAGCAGGGAT 59.396 36.000 0.00 0.00 0.00 3.85
518 657 4.697514 AGGCAGAAAAGAAAAAGGAAAGC 58.302 39.130 0.00 0.00 0.00 3.51
525 664 5.278957 GGCATGAGTAGGCAGAAAAGAAAAA 60.279 40.000 0.00 0.00 34.74 1.94
534 673 1.117994 CAGAGGCATGAGTAGGCAGA 58.882 55.000 0.00 0.00 34.74 4.26
535 674 0.532417 GCAGAGGCATGAGTAGGCAG 60.532 60.000 0.00 0.00 40.72 4.85
539 678 1.068895 CAGAGGCAGAGGCATGAGTAG 59.931 57.143 0.00 0.00 43.71 2.57
541 680 1.906253 CAGAGGCAGAGGCATGAGT 59.094 57.895 0.00 0.00 43.71 3.41
542 681 1.524165 GCAGAGGCAGAGGCATGAG 60.524 63.158 0.00 0.00 43.71 2.90
543 682 2.588439 GCAGAGGCAGAGGCATGA 59.412 61.111 0.00 0.00 43.71 3.07
545 684 2.691623 AGGCAGAGGCAGAGGCAT 60.692 61.111 0.00 0.00 43.71 4.40
546 685 3.397439 GAGGCAGAGGCAGAGGCA 61.397 66.667 0.00 0.00 43.71 4.75
547 686 3.082701 AGAGGCAGAGGCAGAGGC 61.083 66.667 0.00 0.00 43.71 4.70
548 687 2.901813 CAGAGGCAGAGGCAGAGG 59.098 66.667 0.00 0.00 43.71 3.69
549 688 2.187424 GCAGAGGCAGAGGCAGAG 59.813 66.667 0.00 0.00 43.71 3.35
550 689 3.397439 GGCAGAGGCAGAGGCAGA 61.397 66.667 0.00 0.00 43.71 4.26
551 690 3.388703 GAGGCAGAGGCAGAGGCAG 62.389 68.421 0.00 0.00 43.71 4.85
552 691 3.397439 GAGGCAGAGGCAGAGGCA 61.397 66.667 0.00 0.00 43.71 4.75
553 692 3.082701 AGAGGCAGAGGCAGAGGC 61.083 66.667 0.00 0.00 43.71 4.70
554 693 2.901813 CAGAGGCAGAGGCAGAGG 59.098 66.667 0.00 0.00 43.71 3.69
555 694 1.901654 AAGCAGAGGCAGAGGCAGAG 61.902 60.000 0.00 0.00 44.61 3.35
556 695 1.917282 AAGCAGAGGCAGAGGCAGA 60.917 57.895 0.00 0.00 44.61 4.26
557 696 1.745864 CAAGCAGAGGCAGAGGCAG 60.746 63.158 0.00 0.00 44.61 4.85
558 697 2.350134 CAAGCAGAGGCAGAGGCA 59.650 61.111 0.00 0.00 44.61 4.75
559 698 3.132801 GCAAGCAGAGGCAGAGGC 61.133 66.667 0.00 0.00 44.61 4.70
560 699 2.438075 GGCAAGCAGAGGCAGAGG 60.438 66.667 0.00 0.00 44.61 3.69
561 700 1.745864 CAGGCAAGCAGAGGCAGAG 60.746 63.158 0.00 0.00 44.61 3.35
567 706 0.607112 TGAGAGACAGGCAAGCAGAG 59.393 55.000 0.00 0.00 0.00 3.35
595 734 9.330063 CATCATCATCATCATCATCATCATGTA 57.670 33.333 0.00 0.00 0.00 2.29
603 742 8.668510 TCATCATCATCATCATCATCATCATC 57.331 34.615 0.00 0.00 0.00 2.92
605 744 8.267183 TCATCATCATCATCATCATCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
606 745 8.668510 TCATCATCATCATCATCATCATCATC 57.331 34.615 0.00 0.00 0.00 2.92
607 746 9.064706 CATCATCATCATCATCATCATCATCAT 57.935 33.333 0.00 0.00 0.00 2.45
608 747 8.267183 TCATCATCATCATCATCATCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
609 748 8.668510 TCATCATCATCATCATCATCATCATC 57.331 34.615 0.00 0.00 0.00 2.92
610 749 9.064706 CATCATCATCATCATCATCATCATCAT 57.935 33.333 0.00 0.00 0.00 2.45
611 750 8.267183 TCATCATCATCATCATCATCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
612 751 8.668510 TCATCATCATCATCATCATCATCATC 57.331 34.615 0.00 0.00 0.00 2.92
613 752 9.064706 CATCATCATCATCATCATCATCATCAT 57.935 33.333 0.00 0.00 0.00 2.45
614 753 7.012704 GCATCATCATCATCATCATCATCATCA 59.987 37.037 0.00 0.00 0.00 3.07
615 754 7.358830 GCATCATCATCATCATCATCATCATC 58.641 38.462 0.00 0.00 0.00 2.92
616 755 6.017605 CGCATCATCATCATCATCATCATCAT 60.018 38.462 0.00 0.00 0.00 2.45
617 756 5.294306 CGCATCATCATCATCATCATCATCA 59.706 40.000 0.00 0.00 0.00 3.07
618 757 5.277538 CCGCATCATCATCATCATCATCATC 60.278 44.000 0.00 0.00 0.00 2.92
619 758 4.576463 CCGCATCATCATCATCATCATCAT 59.424 41.667 0.00 0.00 0.00 2.45
620 759 3.938963 CCGCATCATCATCATCATCATCA 59.061 43.478 0.00 0.00 0.00 3.07
621 760 3.939592 ACCGCATCATCATCATCATCATC 59.060 43.478 0.00 0.00 0.00 2.92
622 761 3.939592 GACCGCATCATCATCATCATCAT 59.060 43.478 0.00 0.00 0.00 2.45
623 762 3.244284 TGACCGCATCATCATCATCATCA 60.244 43.478 0.00 0.00 29.99 3.07
624 763 3.124806 GTGACCGCATCATCATCATCATC 59.875 47.826 0.00 0.00 40.28 2.92
625 764 3.072211 GTGACCGCATCATCATCATCAT 58.928 45.455 0.00 0.00 40.28 2.45
626 765 2.486918 GTGACCGCATCATCATCATCA 58.513 47.619 0.00 0.00 40.28 3.07
627 766 1.802960 GGTGACCGCATCATCATCATC 59.197 52.381 0.00 0.00 40.28 2.92
628 767 1.544093 GGGTGACCGCATCATCATCAT 60.544 52.381 0.00 0.00 40.63 2.45
629 768 0.179048 GGGTGACCGCATCATCATCA 60.179 55.000 0.00 0.00 40.63 3.07
630 769 2.621763 GGGTGACCGCATCATCATC 58.378 57.895 0.00 0.00 40.63 2.92
631 770 4.885426 GGGTGACCGCATCATCAT 57.115 55.556 0.00 0.00 40.63 2.45
642 781 1.636769 GGGGAGGGAGAATGGGTGAC 61.637 65.000 0.00 0.00 0.00 3.67
643 782 1.307866 GGGGAGGGAGAATGGGTGA 60.308 63.158 0.00 0.00 0.00 4.02
644 783 1.619363 TGGGGAGGGAGAATGGGTG 60.619 63.158 0.00 0.00 0.00 4.61
645 784 1.619669 GTGGGGAGGGAGAATGGGT 60.620 63.158 0.00 0.00 0.00 4.51
646 785 2.386935 GGTGGGGAGGGAGAATGGG 61.387 68.421 0.00 0.00 0.00 4.00
647 786 1.308216 AGGTGGGGAGGGAGAATGG 60.308 63.158 0.00 0.00 0.00 3.16
648 787 0.327000 AGAGGTGGGGAGGGAGAATG 60.327 60.000 0.00 0.00 0.00 2.67
649 788 0.327000 CAGAGGTGGGGAGGGAGAAT 60.327 60.000 0.00 0.00 0.00 2.40
650 789 1.081092 CAGAGGTGGGGAGGGAGAA 59.919 63.158 0.00 0.00 0.00 2.87
676 815 4.344104 AGGAATTTGATGGGTGGTACAAG 58.656 43.478 0.00 0.00 44.16 3.16
677 816 4.044065 AGAGGAATTTGATGGGTGGTACAA 59.956 41.667 0.00 0.00 44.16 2.41
678 817 3.591527 AGAGGAATTTGATGGGTGGTACA 59.408 43.478 0.00 0.00 0.00 2.90
679 818 4.236527 AGAGGAATTTGATGGGTGGTAC 57.763 45.455 0.00 0.00 0.00 3.34
680 819 4.540099 AGAAGAGGAATTTGATGGGTGGTA 59.460 41.667 0.00 0.00 0.00 3.25
695 834 8.465273 TCATCATATCGTTAAAGAGAAGAGGA 57.535 34.615 2.42 2.42 0.00 3.71
696 835 9.138062 CATCATCATATCGTTAAAGAGAAGAGG 57.862 37.037 0.00 0.00 0.00 3.69
710 854 7.927092 AGGAAGAGCAATATCATCATCATATCG 59.073 37.037 0.00 0.00 0.00 2.92
737 881 3.312890 TGATCCAAACCACCCAAAATGT 58.687 40.909 0.00 0.00 0.00 2.71
738 882 4.348863 TTGATCCAAACCACCCAAAATG 57.651 40.909 0.00 0.00 0.00 2.32
743 887 2.692709 ACATTGATCCAAACCACCCA 57.307 45.000 0.00 0.00 0.00 4.51
744 888 3.181476 GCATACATTGATCCAAACCACCC 60.181 47.826 0.00 0.00 0.00 4.61
745 889 3.701040 AGCATACATTGATCCAAACCACC 59.299 43.478 0.00 0.00 0.00 4.61
746 890 4.398988 TGAGCATACATTGATCCAAACCAC 59.601 41.667 0.00 0.00 40.11 4.16
747 891 4.398988 GTGAGCATACATTGATCCAAACCA 59.601 41.667 0.00 0.00 40.11 3.67
748 892 4.641989 AGTGAGCATACATTGATCCAAACC 59.358 41.667 0.00 0.00 40.11 3.27
749 893 5.587844 AGAGTGAGCATACATTGATCCAAAC 59.412 40.000 0.00 0.00 40.11 2.93
750 894 5.748402 AGAGTGAGCATACATTGATCCAAA 58.252 37.500 0.00 0.00 40.11 3.28
751 895 5.104817 TGAGAGTGAGCATACATTGATCCAA 60.105 40.000 0.00 0.00 40.11 3.53
752 896 4.406649 TGAGAGTGAGCATACATTGATCCA 59.593 41.667 0.00 0.00 40.11 3.41
753 897 4.953667 TGAGAGTGAGCATACATTGATCC 58.046 43.478 0.00 0.00 40.11 3.36
754 898 6.310956 GCTATGAGAGTGAGCATACATTGATC 59.689 42.308 0.00 0.00 41.25 2.92
755 899 6.164876 GCTATGAGAGTGAGCATACATTGAT 58.835 40.000 0.00 0.00 36.20 2.57
756 900 5.510349 GGCTATGAGAGTGAGCATACATTGA 60.510 44.000 0.00 0.00 37.98 2.57
757 901 4.689812 GGCTATGAGAGTGAGCATACATTG 59.310 45.833 0.00 0.00 37.98 2.82
758 902 4.346127 TGGCTATGAGAGTGAGCATACATT 59.654 41.667 0.00 0.00 37.98 2.71
766 910 2.964464 AGGACATGGCTATGAGAGTGAG 59.036 50.000 17.90 0.00 37.73 3.51
781 932 8.582891 ATTTAATTAGAGGGTAAGGAGGACAT 57.417 34.615 0.00 0.00 0.00 3.06
786 937 7.974504 TGGCTATTTAATTAGAGGGTAAGGAG 58.025 38.462 8.28 0.00 0.00 3.69
787 938 7.941053 TGGCTATTTAATTAGAGGGTAAGGA 57.059 36.000 8.28 0.00 0.00 3.36
788 939 7.121315 GCATGGCTATTTAATTAGAGGGTAAGG 59.879 40.741 8.28 0.00 0.00 2.69
789 940 7.885399 AGCATGGCTATTTAATTAGAGGGTAAG 59.115 37.037 8.28 0.00 36.99 2.34
790 941 7.755618 AGCATGGCTATTTAATTAGAGGGTAA 58.244 34.615 8.28 0.00 36.99 2.85
822 991 1.402852 GCTCATCTGTGACGTGCAGTA 60.403 52.381 14.10 4.71 35.60 2.74
828 997 2.573869 CCCGCTCATCTGTGACGT 59.426 61.111 0.00 0.00 31.47 4.34
829 998 2.887568 GCCCGCTCATCTGTGACG 60.888 66.667 0.00 0.00 0.00 4.35
842 1019 2.045045 TGAATCAAGCCCTGCCCG 60.045 61.111 0.00 0.00 0.00 6.13
910 1092 3.553917 CGGCATCACGTAAATGTCATACA 59.446 43.478 13.25 0.00 0.00 2.29
914 1096 2.087501 ACGGCATCACGTAAATGTCA 57.912 45.000 13.25 0.00 46.58 3.58
923 1174 1.060713 GGATAATCGACGGCATCACG 58.939 55.000 0.00 0.00 40.31 4.35
954 1205 1.362768 TGAGCAGCTTCAGCATAACG 58.637 50.000 0.00 0.00 45.16 3.18
968 1219 3.018856 CCTGGTTATTTGCAGATGAGCA 58.981 45.455 12.35 12.35 43.99 4.26
973 1224 4.460382 CACAGAACCTGGTTATTTGCAGAT 59.540 41.667 12.96 0.00 35.51 2.90
1175 1429 3.190849 CCGACATGAGCAGCGTGG 61.191 66.667 0.00 0.00 37.85 4.94
1209 1463 3.303135 TTCTCGTGCTCGCTGGGT 61.303 61.111 2.69 0.00 36.96 4.51
1254 1508 4.154347 GTGCTCTCCTGAGGCGGG 62.154 72.222 0.00 0.00 40.53 6.13
1255 1509 4.154347 GGTGCTCTCCTGAGGCGG 62.154 72.222 0.00 0.00 40.53 6.13
1256 1510 3.368190 CTGGTGCTCTCCTGAGGCG 62.368 68.421 0.00 0.00 40.53 5.52
1266 1520 4.357947 TCGTCCACGCTGGTGCTC 62.358 66.667 0.00 0.00 43.00 4.26
1281 1535 2.736995 TTCTTGAAGCCGGCGTCG 60.737 61.111 32.29 21.39 0.00 5.12
1284 1538 3.011760 GACGTTCTTGAAGCCGGCG 62.012 63.158 23.20 6.32 0.00 6.46
1302 1556 2.507854 ATCATCGTAGCCCCCACCG 61.508 63.158 0.00 0.00 0.00 4.94
1308 1562 1.371558 GGACCCATCATCGTAGCCC 59.628 63.158 0.00 0.00 0.00 5.19
1368 1622 1.804601 TCATCATCTCGGCATCATGC 58.195 50.000 0.00 0.00 44.08 4.06
1424 1678 1.010419 ATGGACAACGTAACCGCGTC 61.010 55.000 4.92 0.00 45.00 5.19
1458 1712 1.406614 GCATCAGACTTGTCCTGGGAG 60.407 57.143 0.00 0.00 32.73 4.30
1484 1741 3.778097 TTGCTGCTGCTGCTGTCCA 62.778 57.895 27.67 8.50 39.81 4.02
1485 1742 2.979197 CTTGCTGCTGCTGCTGTCC 61.979 63.158 27.67 8.30 39.81 4.02
1486 1743 2.561885 CTTGCTGCTGCTGCTGTC 59.438 61.111 27.67 14.25 39.81 3.51
1569 1838 1.213926 AGATGATTGGTCTCCTTGGCC 59.786 52.381 0.00 0.00 41.87 5.36
1572 1841 3.433314 CCCAGAGATGATTGGTCTCCTTG 60.433 52.174 0.00 0.00 42.41 3.61
1581 1850 0.816825 CCGCACCCCAGAGATGATTG 60.817 60.000 0.00 0.00 0.00 2.67
1750 2021 8.525876 CAAAACATGCAATACAATATTGAGTCG 58.474 33.333 22.16 8.55 0.00 4.18
1753 2024 8.929827 TCCAAAACATGCAATACAATATTGAG 57.070 30.769 22.16 9.46 0.00 3.02
1764 2035 9.550406 CTGGATATTATTTCCAAAACATGCAAT 57.450 29.630 5.92 0.00 42.56 3.56
1765 2036 8.538701 ACTGGATATTATTTCCAAAACATGCAA 58.461 29.630 5.92 0.00 42.56 4.08
1766 2037 8.076910 ACTGGATATTATTTCCAAAACATGCA 57.923 30.769 5.92 0.00 42.56 3.96
1767 2038 8.416329 AGACTGGATATTATTTCCAAAACATGC 58.584 33.333 5.92 0.00 42.56 4.06
1787 2065 5.838531 AAGTACGGAAAGAGATAGACTGG 57.161 43.478 0.00 0.00 0.00 4.00
1795 2073 3.825014 ACACTGCTAAGTACGGAAAGAGA 59.175 43.478 0.00 0.00 33.79 3.10
1807 2087 7.170828 TCAACAACTGTAATGTACACTGCTAAG 59.829 37.037 0.00 0.00 34.46 2.18
1846 2130 1.741993 CAAGCAACTAACACGCACAC 58.258 50.000 0.00 0.00 0.00 3.82
1890 2195 0.946221 ACAGTAAGCTGAGCACGTGC 60.946 55.000 32.79 32.79 45.28 5.34
1891 2196 1.502231 AACAGTAAGCTGAGCACGTG 58.498 50.000 12.28 12.28 45.28 4.49
1892 2197 2.135933 GAAACAGTAAGCTGAGCACGT 58.864 47.619 7.39 0.00 45.28 4.49
1893 2198 2.408050 AGAAACAGTAAGCTGAGCACG 58.592 47.619 7.39 0.00 45.28 5.34
1894 2199 4.513318 AGAAAGAAACAGTAAGCTGAGCAC 59.487 41.667 7.39 0.00 45.28 4.40
1895 2200 4.512944 CAGAAAGAAACAGTAAGCTGAGCA 59.487 41.667 7.39 0.00 45.28 4.26
1896 2201 4.612486 GCAGAAAGAAACAGTAAGCTGAGC 60.612 45.833 0.00 0.00 45.28 4.26
1897 2202 4.512944 TGCAGAAAGAAACAGTAAGCTGAG 59.487 41.667 1.30 0.00 45.28 3.35
1906 2211 6.216569 TGTCTAGTACTGCAGAAAGAAACAG 58.783 40.000 23.35 6.20 36.22 3.16
1917 2222 7.144722 CAAAATGGATTTGTCTAGTACTGCA 57.855 36.000 5.39 0.00 42.84 4.41
1929 2234 5.232463 AGCTTACTGCACAAAATGGATTTG 58.768 37.500 0.00 0.00 45.55 2.32
2280 2586 3.434299 GCCAAATGAAGCAAAATCAGTGG 59.566 43.478 0.00 0.00 38.25 4.00
2406 2712 5.531634 TGACTCAAATCCAATTTGCTGTTC 58.468 37.500 7.39 2.98 46.96 3.18
2426 2732 5.948992 ACTAAGCCAAAGTGAAATCTGAC 57.051 39.130 0.00 0.00 0.00 3.51
2538 2849 2.225445 TGTAACAGGGGGTACTGCTAGT 60.225 50.000 0.00 0.00 42.21 2.57
2549 3034 0.839946 CCCAGGAGATGTAACAGGGG 59.160 60.000 0.00 0.00 0.00 4.79
2575 3060 2.292126 TGCTGGGCCATGATAAAGGAAA 60.292 45.455 6.72 0.00 0.00 3.13
2605 3090 2.812011 CAAAAACTACGCCCTGCTAACT 59.188 45.455 0.00 0.00 0.00 2.24
2634 3119 3.670625 TGCCACACAACACCTCTATAAC 58.329 45.455 0.00 0.00 0.00 1.89
2643 3128 5.521735 TCATTTTAAACATGCCACACAACAC 59.478 36.000 0.00 0.00 0.00 3.32
2672 3157 4.081420 TCAGCTATCCCAACAGTTCTTCTC 60.081 45.833 0.00 0.00 0.00 2.87
2686 3177 6.979238 ACAATTTCGTAAGTAGTCAGCTATCC 59.021 38.462 0.00 0.00 39.48 2.59
2690 3181 5.634020 GTCACAATTTCGTAAGTAGTCAGCT 59.366 40.000 0.00 0.00 39.48 4.24
2691 3182 5.634020 AGTCACAATTTCGTAAGTAGTCAGC 59.366 40.000 0.00 0.00 39.48 4.26
2692 3183 7.169308 ACAAGTCACAATTTCGTAAGTAGTCAG 59.831 37.037 0.00 0.00 39.48 3.51
2693 3184 6.982141 ACAAGTCACAATTTCGTAAGTAGTCA 59.018 34.615 0.00 0.00 39.48 3.41
2694 3185 7.168637 TCACAAGTCACAATTTCGTAAGTAGTC 59.831 37.037 0.00 0.00 39.48 2.59
2695 3186 6.982141 TCACAAGTCACAATTTCGTAAGTAGT 59.018 34.615 0.00 0.00 39.48 2.73
2696 3187 7.381408 TCTCACAAGTCACAATTTCGTAAGTAG 59.619 37.037 0.00 0.00 39.48 2.57
2697 3188 7.204604 TCTCACAAGTCACAATTTCGTAAGTA 58.795 34.615 0.00 0.00 39.48 2.24
2698 3189 6.046593 TCTCACAAGTCACAATTTCGTAAGT 58.953 36.000 0.00 0.00 39.48 2.24
2699 3190 6.525121 TCTCACAAGTCACAATTTCGTAAG 57.475 37.500 0.00 0.00 0.00 2.34
2700 3191 6.565811 GCATCTCACAAGTCACAATTTCGTAA 60.566 38.462 0.00 0.00 0.00 3.18
2701 3192 5.107104 GCATCTCACAAGTCACAATTTCGTA 60.107 40.000 0.00 0.00 0.00 3.43
2702 3193 4.319766 GCATCTCACAAGTCACAATTTCGT 60.320 41.667 0.00 0.00 0.00 3.85
2703 3194 4.153986 GCATCTCACAAGTCACAATTTCG 58.846 43.478 0.00 0.00 0.00 3.46
2704 3195 5.112220 TGCATCTCACAAGTCACAATTTC 57.888 39.130 0.00 0.00 0.00 2.17
2705 3196 4.558095 GCTGCATCTCACAAGTCACAATTT 60.558 41.667 0.00 0.00 0.00 1.82
2706 3197 3.057736 GCTGCATCTCACAAGTCACAATT 60.058 43.478 0.00 0.00 0.00 2.32
2707 3198 2.486982 GCTGCATCTCACAAGTCACAAT 59.513 45.455 0.00 0.00 0.00 2.71
2708 3199 1.875514 GCTGCATCTCACAAGTCACAA 59.124 47.619 0.00 0.00 0.00 3.33
2709 3200 1.071228 AGCTGCATCTCACAAGTCACA 59.929 47.619 1.02 0.00 0.00 3.58
2710 3201 1.805869 AGCTGCATCTCACAAGTCAC 58.194 50.000 1.02 0.00 0.00 3.67
2711 3202 2.551032 CAAAGCTGCATCTCACAAGTCA 59.449 45.455 1.02 0.00 0.00 3.41
2712 3203 2.095364 CCAAAGCTGCATCTCACAAGTC 60.095 50.000 1.02 0.00 0.00 3.01
2713 3204 1.884579 CCAAAGCTGCATCTCACAAGT 59.115 47.619 1.02 0.00 0.00 3.16
2714 3205 1.884579 ACCAAAGCTGCATCTCACAAG 59.115 47.619 1.02 0.00 0.00 3.16
2724 3215 4.503741 TTCATACTGAAACCAAAGCTGC 57.496 40.909 0.00 0.00 32.71 5.25
2757 3248 4.735369 TCAGTGGGTGGTGTGAAAAATAT 58.265 39.130 0.00 0.00 0.00 1.28
2760 3251 2.516227 TCAGTGGGTGGTGTGAAAAA 57.484 45.000 0.00 0.00 0.00 1.94
2761 3252 2.746279 ATCAGTGGGTGGTGTGAAAA 57.254 45.000 0.00 0.00 0.00 2.29
2762 3253 2.746279 AATCAGTGGGTGGTGTGAAA 57.254 45.000 0.00 0.00 0.00 2.69
2808 3299 7.094377 GCAACTGAAAAGTTACCTCATTATCCA 60.094 37.037 0.00 0.00 0.00 3.41
2829 3320 4.822896 TGAACGTGGGTAAAAATAGCAACT 59.177 37.500 0.00 0.00 0.00 3.16
2853 3344 4.621068 TTTGCTGTCTGCTATGCAATAC 57.379 40.909 0.00 0.00 43.53 1.89
2907 3398 1.885887 TGAACCAAAGCGAAATCTGGG 59.114 47.619 0.00 0.00 32.94 4.45
2965 3456 6.643770 CCAAGTTCAGAAAAATCAGTGATTGG 59.356 38.462 18.94 8.95 32.14 3.16
2980 3471 5.272283 ACTAAGTTCGTTCCAAGTTCAGA 57.728 39.130 0.00 0.00 0.00 3.27
2993 3484 8.798748 AAATCTCATTATCCGTACTAAGTTCG 57.201 34.615 0.00 0.00 0.00 3.95
3134 3634 6.509418 TGAAATAGCATCCACCACTTTTAC 57.491 37.500 0.00 0.00 0.00 2.01
3225 3725 6.267492 TCAGATAGAGATGAGAACTGGGTA 57.733 41.667 0.00 0.00 0.00 3.69
3307 3808 9.891828 CAATTTACTGACTGCATACAAGTTTAA 57.108 29.630 0.00 0.00 0.00 1.52
3309 3810 7.014230 ACCAATTTACTGACTGCATACAAGTTT 59.986 33.333 0.00 0.00 0.00 2.66
3366 3868 8.200792 ACAAGAAGGTTCTCATATGATACTGAC 58.799 37.037 5.72 1.37 36.28 3.51
3422 4024 6.292703 GCACATAGAAGACGTGTAAACAAACT 60.293 38.462 0.00 0.00 33.13 2.66
3423 4025 5.844396 GCACATAGAAGACGTGTAAACAAAC 59.156 40.000 0.00 0.00 33.13 2.93
3447 4049 4.817517 ACCTAGGTGAACTGTATGTTTCG 58.182 43.478 15.42 0.00 39.30 3.46
3470 4079 2.895404 AGGACGCTGTTACAGGTTAAGA 59.105 45.455 14.63 0.00 31.21 2.10
3567 4183 8.712363 AGTGTGCGCTAATATAATAGAAACATG 58.288 33.333 9.73 0.00 0.00 3.21
3622 4265 6.261859 CGGATATCAGGAATTATCGTCTCTG 58.738 44.000 4.83 0.00 0.00 3.35
3628 4271 3.553511 GCAGCGGATATCAGGAATTATCG 59.446 47.826 4.83 0.00 0.00 2.92
3642 4285 0.254178 ATTCACAGAAGGCAGCGGAT 59.746 50.000 0.00 0.00 0.00 4.18
3647 4290 3.935203 ACATAACGATTCACAGAAGGCAG 59.065 43.478 0.00 0.00 0.00 4.85
3702 4346 6.486657 GGAATTCGGATTGGATCATTAACTGA 59.513 38.462 0.00 0.00 38.53 3.41
3708 4352 4.141181 TCCAGGAATTCGGATTGGATCATT 60.141 41.667 12.73 0.00 33.21 2.57
3721 4365 0.698818 ACCCACCAGTCCAGGAATTC 59.301 55.000 0.00 0.00 0.00 2.17
3723 4367 0.178861 AGACCCACCAGTCCAGGAAT 60.179 55.000 0.00 0.00 37.49 3.01
3724 4368 1.127567 CAGACCCACCAGTCCAGGAA 61.128 60.000 0.00 0.00 37.49 3.36
3725 4369 1.536418 CAGACCCACCAGTCCAGGA 60.536 63.158 0.00 0.00 37.49 3.86
3785 4429 1.522580 GACTTCCAGGGCGATCTGC 60.523 63.158 0.00 1.55 45.38 4.26
3881 4527 6.805713 ACAAGAAAATACCCTGTCAAACTTG 58.194 36.000 0.00 0.00 37.56 3.16
3936 4582 3.451178 ACGACTATGGGTACAAGAGCAAT 59.549 43.478 0.00 0.00 0.00 3.56
4055 4736 6.757897 ACACGGTTATCATGAATTTCACAT 57.242 33.333 0.00 0.00 0.00 3.21
4064 4745 3.057876 GGCAACAAACACGGTTATCATGA 60.058 43.478 0.00 0.00 0.00 3.07
4074 4755 1.226547 AAGCACGGCAACAAACACG 60.227 52.632 0.00 0.00 0.00 4.49
4076 4757 0.457509 CACAAGCACGGCAACAAACA 60.458 50.000 0.00 0.00 0.00 2.83
4085 4766 3.495193 CTGAATTCATTCACAAGCACGG 58.505 45.455 8.96 0.00 41.51 4.94
4094 4775 3.091545 GGTTCCCAGCTGAATTCATTCA 58.908 45.455 17.39 2.29 43.94 2.57
4104 4785 2.450476 AGCAAAATAGGTTCCCAGCTG 58.550 47.619 6.78 6.78 31.45 4.24
4105 4786 2.907458 AGCAAAATAGGTTCCCAGCT 57.093 45.000 0.00 0.00 34.24 4.24
4106 4787 3.961480 AAAGCAAAATAGGTTCCCAGC 57.039 42.857 0.00 0.00 0.00 4.85
4134 4815 2.452600 AGGAAACCCAGCTTTGTTGA 57.547 45.000 0.00 0.00 0.00 3.18
4136 4817 5.610398 CAAAATAGGAAACCCAGCTTTGTT 58.390 37.500 0.00 0.00 0.00 2.83
4137 4818 4.503123 GCAAAATAGGAAACCCAGCTTTGT 60.503 41.667 0.00 0.00 0.00 2.83
4146 4827 5.056480 AGTGCAAAAGCAAAATAGGAAACC 58.944 37.500 0.00 0.00 0.00 3.27
4151 4832 5.523188 TGAACAAGTGCAAAAGCAAAATAGG 59.477 36.000 0.00 0.00 0.00 2.57
4152 4833 6.256321 AGTGAACAAGTGCAAAAGCAAAATAG 59.744 34.615 0.00 0.00 0.00 1.73
4153 4834 6.105333 AGTGAACAAGTGCAAAAGCAAAATA 58.895 32.000 0.00 0.00 0.00 1.40
4154 4835 4.937015 AGTGAACAAGTGCAAAAGCAAAAT 59.063 33.333 0.00 0.00 0.00 1.82
4156 4837 3.924144 AGTGAACAAGTGCAAAAGCAAA 58.076 36.364 0.00 0.00 0.00 3.68
4157 4838 3.591196 AGTGAACAAGTGCAAAAGCAA 57.409 38.095 0.00 0.00 0.00 3.91
4159 4840 3.253230 ACAAGTGAACAAGTGCAAAAGC 58.747 40.909 0.00 0.00 0.00 3.51
4161 4842 3.431572 GCAACAAGTGAACAAGTGCAAAA 59.568 39.130 0.00 0.00 0.00 2.44
4162 4843 2.992543 GCAACAAGTGAACAAGTGCAAA 59.007 40.909 0.00 0.00 0.00 3.68
4163 4844 2.230992 AGCAACAAGTGAACAAGTGCAA 59.769 40.909 0.00 0.00 0.00 4.08
4164 4845 1.818060 AGCAACAAGTGAACAAGTGCA 59.182 42.857 0.00 0.00 0.00 4.57
4165 4846 2.566952 AGCAACAAGTGAACAAGTGC 57.433 45.000 0.00 0.00 0.00 4.40
4166 4847 4.442073 GCATTAGCAACAAGTGAACAAGTG 59.558 41.667 0.00 0.00 41.58 3.16
4331 5045 8.432110 TTTTTGAACCTAAAAAGAGATTTGGC 57.568 30.769 0.00 0.00 35.32 4.52
4426 5143 3.728221 CGATGATAAAGACAGTCAGCTCG 59.272 47.826 2.66 0.00 0.00 5.03
4445 5191 9.613428 TTCAGTGAAAGTATATGGATTTTCGAT 57.387 29.630 2.20 0.00 33.40 3.59
4471 5217 5.217978 ACTGGCATTGTTTGAATGTTCAT 57.782 34.783 0.00 0.00 37.00 2.57
4613 5363 1.483827 TGTGAATTTTGCAGTTGGGCA 59.516 42.857 0.00 0.00 43.19 5.36
4614 5364 2.237393 TGTGAATTTTGCAGTTGGGC 57.763 45.000 0.00 0.00 0.00 5.36
4615 5365 3.795877 AGTTGTGAATTTTGCAGTTGGG 58.204 40.909 0.00 0.00 0.00 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.