Multiple sequence alignment - TraesCS2A01G592700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G592700 chr2A 100.000 2600 0 0 1 2600 779676139 779673540 0.000000e+00 4802.0
1 TraesCS2A01G592700 chr2A 88.925 912 58 16 713 1610 779809649 779808767 0.000000e+00 1085.0
2 TraesCS2A01G592700 chr2A 93.525 139 9 0 373 511 779809997 779809859 9.430000e-50 207.0
3 TraesCS2A01G592700 chr2A 95.349 43 2 0 1716 1758 779846894 779846936 4.640000e-08 69.4
4 TraesCS2A01G592700 chr2A 96.875 32 1 0 1714 1745 779808737 779808706 1.000000e-03 54.7
5 TraesCS2A01G592700 chr2B 92.105 646 22 12 1979 2600 776975867 776976507 0.000000e+00 883.0
6 TraesCS2A01G592700 chr2B 86.885 793 50 17 928 1710 776888865 776889613 0.000000e+00 839.0
7 TraesCS2A01G592700 chr2B 87.595 395 18 10 547 930 776888363 776888737 1.850000e-116 429.0
8 TraesCS2A01G592700 chr2B 86.243 189 26 0 1345 1533 776766061 776765873 3.390000e-49 206.0
9 TraesCS2A01G592700 chr2B 91.667 48 2 2 445 492 776888328 776888373 6.010000e-07 65.8
10 TraesCS2A01G592700 chr2D 91.190 647 26 8 1979 2600 634051273 634051913 0.000000e+00 850.0
11 TraesCS2A01G592700 chr2D 82.422 1024 80 30 705 1710 633877268 633878209 0.000000e+00 802.0
12 TraesCS2A01G592700 chr2D 83.846 260 20 14 348 604 633876920 633877160 7.240000e-56 228.0
13 TraesCS2A01G592700 chr2D 87.302 189 24 0 1345 1533 633785463 633785275 1.570000e-52 217.0
14 TraesCS2A01G592700 chr5D 100.000 29 0 0 294 322 564125250 564125222 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G592700 chr2A 779673540 779676139 2599 True 4802.0 4802 100.000000 1 2600 1 chr2A.!!$R1 2599
1 TraesCS2A01G592700 chr2A 779808706 779809997 1291 True 448.9 1085 93.108333 373 1745 3 chr2A.!!$R2 1372
2 TraesCS2A01G592700 chr2B 776975867 776976507 640 False 883.0 883 92.105000 1979 2600 1 chr2B.!!$F1 621
3 TraesCS2A01G592700 chr2B 776888328 776889613 1285 False 444.6 839 88.715667 445 1710 3 chr2B.!!$F2 1265
4 TraesCS2A01G592700 chr2D 634051273 634051913 640 False 850.0 850 91.190000 1979 2600 1 chr2D.!!$F1 621
5 TraesCS2A01G592700 chr2D 633876920 633878209 1289 False 515.0 802 83.134000 348 1710 2 chr2D.!!$F2 1362

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 163 0.378257 ATGTCGATTTGGCACGATGC 59.622 50.0 1.94 0.0 44.08 3.91 F
1141 1414 0.307760 CACGGTGTGTTTTCTGCTCC 59.692 55.0 0.00 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1342 1631 0.388134 TTGACGTACTTGCTCTCCGC 60.388 55.0 0.00 0.00 39.77 5.54 R
2452 2791 0.242017 ATGGAGCGCTGCTTGTTTTC 59.758 50.0 29.46 4.61 39.88 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.481617 ATGCCGTGGCCGTGCATA 62.482 61.111 20.91 0.00 43.96 3.14
22 23 3.986072 ATGCCGTGGCCGTGCATAA 62.986 57.895 20.91 0.00 43.96 1.90
23 24 3.209097 GCCGTGGCCGTGCATAAT 61.209 61.111 0.00 0.00 34.56 1.28
24 25 2.715005 CCGTGGCCGTGCATAATG 59.285 61.111 0.00 0.00 0.00 1.90
25 26 2.112198 CCGTGGCCGTGCATAATGT 61.112 57.895 0.00 0.00 0.00 2.71
26 27 0.812014 CCGTGGCCGTGCATAATGTA 60.812 55.000 0.00 0.00 0.00 2.29
27 28 1.225855 CGTGGCCGTGCATAATGTAT 58.774 50.000 0.00 0.00 0.00 2.29
28 29 1.601903 CGTGGCCGTGCATAATGTATT 59.398 47.619 0.00 0.00 0.00 1.89
29 30 2.349438 CGTGGCCGTGCATAATGTATTC 60.349 50.000 0.00 0.00 0.00 1.75
30 31 2.616376 GTGGCCGTGCATAATGTATTCA 59.384 45.455 0.00 0.00 0.00 2.57
31 32 3.253188 GTGGCCGTGCATAATGTATTCAT 59.747 43.478 0.00 0.00 35.59 2.57
32 33 3.252944 TGGCCGTGCATAATGTATTCATG 59.747 43.478 0.00 0.00 34.19 3.07
33 34 3.236816 GCCGTGCATAATGTATTCATGC 58.763 45.455 0.00 0.00 44.23 4.06
34 35 3.481839 CCGTGCATAATGTATTCATGCG 58.518 45.455 0.00 0.00 46.37 4.73
35 36 2.904319 CGTGCATAATGTATTCATGCGC 59.096 45.455 0.00 0.00 46.37 6.09
37 38 3.887741 TGCATAATGTATTCATGCGCAC 58.112 40.909 14.90 0.00 46.37 5.34
38 39 3.314635 TGCATAATGTATTCATGCGCACA 59.685 39.130 14.90 5.14 46.37 4.57
39 40 4.023021 TGCATAATGTATTCATGCGCACAT 60.023 37.500 14.90 7.83 46.37 3.21
50 51 3.864686 CGCACATGTGGGCTACGC 61.865 66.667 27.32 10.68 43.67 4.42
51 52 2.745884 GCACATGTGGGCTACGCA 60.746 61.111 26.55 0.00 42.27 5.24
52 53 3.039202 GCACATGTGGGCTACGCAC 62.039 63.158 26.55 7.74 43.40 5.34
53 54 2.046314 ACATGTGGGCTACGCACC 60.046 61.111 11.61 0.00 44.87 5.01
54 55 2.046411 CATGTGGGCTACGCACCA 60.046 61.111 11.61 0.72 44.87 4.17
55 56 1.673993 CATGTGGGCTACGCACCAA 60.674 57.895 11.61 0.00 44.87 3.67
56 57 1.674322 ATGTGGGCTACGCACCAAC 60.674 57.895 11.61 0.00 44.87 3.77
57 58 2.032071 GTGGGCTACGCACCAACT 59.968 61.111 3.59 0.00 40.65 3.16
58 59 1.599797 GTGGGCTACGCACCAACTT 60.600 57.895 3.59 0.00 40.65 2.66
59 60 1.149627 TGGGCTACGCACCAACTTT 59.850 52.632 0.00 0.00 32.89 2.66
60 61 0.887387 TGGGCTACGCACCAACTTTC 60.887 55.000 0.00 0.00 32.89 2.62
61 62 0.887387 GGGCTACGCACCAACTTTCA 60.887 55.000 0.00 0.00 0.00 2.69
62 63 1.165270 GGCTACGCACCAACTTTCAT 58.835 50.000 0.00 0.00 0.00 2.57
63 64 2.352388 GGCTACGCACCAACTTTCATA 58.648 47.619 0.00 0.00 0.00 2.15
64 65 2.095372 GGCTACGCACCAACTTTCATAC 59.905 50.000 0.00 0.00 0.00 2.39
65 66 2.739913 GCTACGCACCAACTTTCATACA 59.260 45.455 0.00 0.00 0.00 2.29
66 67 3.187637 GCTACGCACCAACTTTCATACAA 59.812 43.478 0.00 0.00 0.00 2.41
67 68 4.142687 GCTACGCACCAACTTTCATACAAT 60.143 41.667 0.00 0.00 0.00 2.71
68 69 5.064198 GCTACGCACCAACTTTCATACAATA 59.936 40.000 0.00 0.00 0.00 1.90
69 70 5.950758 ACGCACCAACTTTCATACAATAA 57.049 34.783 0.00 0.00 0.00 1.40
70 71 6.509418 ACGCACCAACTTTCATACAATAAT 57.491 33.333 0.00 0.00 0.00 1.28
71 72 7.618502 ACGCACCAACTTTCATACAATAATA 57.381 32.000 0.00 0.00 0.00 0.98
72 73 7.469260 ACGCACCAACTTTCATACAATAATAC 58.531 34.615 0.00 0.00 0.00 1.89
73 74 7.335924 ACGCACCAACTTTCATACAATAATACT 59.664 33.333 0.00 0.00 0.00 2.12
74 75 7.850982 CGCACCAACTTTCATACAATAATACTC 59.149 37.037 0.00 0.00 0.00 2.59
75 76 8.129211 GCACCAACTTTCATACAATAATACTCC 58.871 37.037 0.00 0.00 0.00 3.85
76 77 9.396022 CACCAACTTTCATACAATAATACTCCT 57.604 33.333 0.00 0.00 0.00 3.69
77 78 9.975218 ACCAACTTTCATACAATAATACTCCTT 57.025 29.630 0.00 0.00 0.00 3.36
80 81 9.886132 AACTTTCATACAATAATACTCCTTCGT 57.114 29.630 0.00 0.00 0.00 3.85
123 124 9.920946 AAAAGCATTTAGATCACTATAAAGGGA 57.079 29.630 0.00 0.00 37.28 4.20
124 125 9.566432 AAAGCATTTAGATCACTATAAAGGGAG 57.434 33.333 0.00 0.00 35.70 4.30
125 126 8.268878 AGCATTTAGATCACTATAAAGGGAGT 57.731 34.615 0.00 0.00 38.95 3.85
126 127 9.381038 AGCATTTAGATCACTATAAAGGGAGTA 57.619 33.333 0.00 0.00 38.95 2.59
127 128 9.646427 GCATTTAGATCACTATAAAGGGAGTAG 57.354 37.037 0.00 0.00 38.95 2.57
133 134 9.577222 AGATCACTATAAAGGGAGTAGTAGTTC 57.423 37.037 0.00 0.00 38.95 3.01
134 135 9.577222 GATCACTATAAAGGGAGTAGTAGTTCT 57.423 37.037 0.00 0.00 38.95 3.01
135 136 8.749026 TCACTATAAAGGGAGTAGTAGTTCTG 57.251 38.462 0.00 0.00 29.45 3.02
136 137 8.334734 TCACTATAAAGGGAGTAGTAGTTCTGT 58.665 37.037 0.00 0.00 29.45 3.41
137 138 8.407064 CACTATAAAGGGAGTAGTAGTTCTGTG 58.593 40.741 0.00 0.00 0.00 3.66
138 139 8.114743 ACTATAAAGGGAGTAGTAGTTCTGTGT 58.885 37.037 0.00 0.00 0.00 3.72
139 140 5.470047 AAAGGGAGTAGTAGTTCTGTGTG 57.530 43.478 0.00 0.00 0.00 3.82
140 141 4.115398 AGGGAGTAGTAGTTCTGTGTGT 57.885 45.455 0.00 0.00 0.00 3.72
141 142 5.252586 AGGGAGTAGTAGTTCTGTGTGTA 57.747 43.478 0.00 0.00 0.00 2.90
142 143 5.828871 AGGGAGTAGTAGTTCTGTGTGTAT 58.171 41.667 0.00 0.00 0.00 2.29
143 144 6.966751 AGGGAGTAGTAGTTCTGTGTGTATA 58.033 40.000 0.00 0.00 0.00 1.47
144 145 7.584532 AGGGAGTAGTAGTTCTGTGTGTATAT 58.415 38.462 0.00 0.00 0.00 0.86
145 146 7.502895 AGGGAGTAGTAGTTCTGTGTGTATATG 59.497 40.741 0.00 0.00 0.00 1.78
146 147 7.284944 GGGAGTAGTAGTTCTGTGTGTATATGT 59.715 40.741 0.00 0.00 0.00 2.29
147 148 8.344098 GGAGTAGTAGTTCTGTGTGTATATGTC 58.656 40.741 0.00 0.00 0.00 3.06
148 149 7.917597 AGTAGTAGTTCTGTGTGTATATGTCG 58.082 38.462 0.00 0.00 0.00 4.35
149 150 6.997239 AGTAGTTCTGTGTGTATATGTCGA 57.003 37.500 0.00 0.00 0.00 4.20
150 151 7.569639 AGTAGTTCTGTGTGTATATGTCGAT 57.430 36.000 0.00 0.00 0.00 3.59
151 152 7.997482 AGTAGTTCTGTGTGTATATGTCGATT 58.003 34.615 0.00 0.00 0.00 3.34
152 153 8.467598 AGTAGTTCTGTGTGTATATGTCGATTT 58.532 33.333 0.00 0.00 0.00 2.17
153 154 7.525688 AGTTCTGTGTGTATATGTCGATTTG 57.474 36.000 0.00 0.00 0.00 2.32
154 155 6.535150 AGTTCTGTGTGTATATGTCGATTTGG 59.465 38.462 0.00 0.00 0.00 3.28
155 156 4.808895 TCTGTGTGTATATGTCGATTTGGC 59.191 41.667 0.00 0.00 0.00 4.52
156 157 4.508662 TGTGTGTATATGTCGATTTGGCA 58.491 39.130 0.00 0.00 0.00 4.92
157 158 4.331443 TGTGTGTATATGTCGATTTGGCAC 59.669 41.667 0.00 0.00 0.00 5.01
158 159 3.553917 TGTGTATATGTCGATTTGGCACG 59.446 43.478 0.00 0.00 0.00 5.34
159 160 3.799963 GTGTATATGTCGATTTGGCACGA 59.200 43.478 0.00 0.00 36.18 4.35
160 161 4.447724 GTGTATATGTCGATTTGGCACGAT 59.552 41.667 1.94 0.00 40.50 3.73
161 162 4.447389 TGTATATGTCGATTTGGCACGATG 59.553 41.667 1.94 0.00 40.50 3.84
162 163 0.378257 ATGTCGATTTGGCACGATGC 59.622 50.000 1.94 0.00 44.08 3.91
163 164 1.296867 GTCGATTTGGCACGATGCG 60.297 57.895 1.94 0.00 46.21 4.73
164 165 1.446966 TCGATTTGGCACGATGCGA 60.447 52.632 0.00 0.00 46.21 5.10
165 166 1.296867 CGATTTGGCACGATGCGAC 60.297 57.895 0.00 0.00 46.21 5.19
166 167 1.296867 GATTTGGCACGATGCGACG 60.297 57.895 0.00 0.00 46.21 5.12
167 168 3.381169 ATTTGGCACGATGCGACGC 62.381 57.895 14.19 14.19 46.21 5.19
172 173 3.308008 CACGATGCGACGCGAGAG 61.308 66.667 15.93 8.96 36.70 3.20
173 174 4.538283 ACGATGCGACGCGAGAGG 62.538 66.667 15.93 5.06 36.70 3.69
174 175 4.237809 CGATGCGACGCGAGAGGA 62.238 66.667 15.93 4.80 0.00 3.71
175 176 2.352915 GATGCGACGCGAGAGGAG 60.353 66.667 15.93 0.00 0.00 3.69
176 177 3.815569 GATGCGACGCGAGAGGAGG 62.816 68.421 15.93 0.00 0.00 4.30
182 183 4.292178 CGCGAGAGGAGGCCCATC 62.292 72.222 0.00 0.00 33.88 3.51
183 184 4.292178 GCGAGAGGAGGCCCATCG 62.292 72.222 0.00 3.51 42.93 3.84
184 185 2.835431 CGAGAGGAGGCCCATCGT 60.835 66.667 0.00 0.00 38.40 3.73
185 186 1.528542 CGAGAGGAGGCCCATCGTA 60.529 63.158 0.00 0.00 38.40 3.43
186 187 1.797211 CGAGAGGAGGCCCATCGTAC 61.797 65.000 0.00 0.00 38.40 3.67
187 188 0.755698 GAGAGGAGGCCCATCGTACA 60.756 60.000 0.00 0.00 33.88 2.90
188 189 1.043673 AGAGGAGGCCCATCGTACAC 61.044 60.000 0.00 0.00 33.88 2.90
189 190 2.029307 GAGGAGGCCCATCGTACACC 62.029 65.000 0.00 0.00 33.88 4.16
190 191 2.106332 GAGGCCCATCGTACACCG 59.894 66.667 0.00 0.00 38.13 4.94
203 204 2.444351 GTACACCGAGTACGTACATGC 58.556 52.381 26.55 14.38 43.27 4.06
204 205 0.883153 ACACCGAGTACGTACATGCA 59.117 50.000 26.55 0.00 37.88 3.96
205 206 1.475280 ACACCGAGTACGTACATGCAT 59.525 47.619 26.55 6.30 37.88 3.96
206 207 1.852280 CACCGAGTACGTACATGCATG 59.148 52.381 26.55 25.09 37.88 4.06
207 208 0.852777 CCGAGTACGTACATGCATGC 59.147 55.000 26.53 11.82 37.88 4.06
208 209 1.555477 CGAGTACGTACATGCATGCA 58.445 50.000 26.53 25.04 34.56 3.96
209 210 2.127251 CGAGTACGTACATGCATGCAT 58.873 47.619 27.46 27.46 34.25 3.96
210 211 2.097250 CGAGTACGTACATGCATGCATG 60.097 50.000 44.22 44.22 44.90 4.06
211 212 5.695905 CGAGTACGTACATGCATGCATGC 62.696 52.174 45.24 38.71 44.17 4.06
219 220 4.547905 GCATGCATGCGCTCGCTT 62.548 61.111 33.99 12.38 44.67 4.68
220 221 2.650917 CATGCATGCGCTCGCTTG 60.651 61.111 14.93 20.92 45.38 4.01
229 230 3.854459 GCTCGCTTGCGTGTAGGC 61.854 66.667 14.70 8.80 0.00 3.93
230 231 3.188786 CTCGCTTGCGTGTAGGCC 61.189 66.667 14.70 0.00 0.00 5.19
231 232 4.752879 TCGCTTGCGTGTAGGCCC 62.753 66.667 14.70 0.00 0.00 5.80
233 234 3.431725 GCTTGCGTGTAGGCCCAC 61.432 66.667 0.00 0.00 0.00 4.61
239 240 4.675029 GTGTAGGCCCACGCACGT 62.675 66.667 10.19 0.00 36.38 4.49
240 241 3.931247 TGTAGGCCCACGCACGTT 61.931 61.111 0.00 0.00 36.38 3.99
241 242 3.419759 GTAGGCCCACGCACGTTG 61.420 66.667 0.00 0.00 36.38 4.10
242 243 3.617735 TAGGCCCACGCACGTTGA 61.618 61.111 0.00 0.00 36.38 3.18
243 244 3.583276 TAGGCCCACGCACGTTGAG 62.583 63.158 0.00 0.00 36.38 3.02
245 246 2.356553 GCCCACGCACGTTGAGTA 60.357 61.111 0.00 0.00 34.03 2.59
246 247 2.664436 GCCCACGCACGTTGAGTAC 61.664 63.158 0.00 0.00 34.03 2.73
257 258 3.579147 CGTTGAGTACGTGCAAAAGAA 57.421 42.857 6.38 0.00 45.14 2.52
258 259 3.930618 CGTTGAGTACGTGCAAAAGAAA 58.069 40.909 6.38 0.00 45.14 2.52
259 260 4.336101 CGTTGAGTACGTGCAAAAGAAAA 58.664 39.130 6.38 0.00 45.14 2.29
260 261 4.967575 CGTTGAGTACGTGCAAAAGAAAAT 59.032 37.500 6.38 0.00 45.14 1.82
261 262 6.130723 CGTTGAGTACGTGCAAAAGAAAATA 58.869 36.000 6.38 0.00 45.14 1.40
262 263 6.084551 CGTTGAGTACGTGCAAAAGAAAATAC 59.915 38.462 6.38 0.00 45.14 1.89
263 264 6.854496 TGAGTACGTGCAAAAGAAAATACT 57.146 33.333 6.38 0.00 0.00 2.12
264 265 7.949903 TGAGTACGTGCAAAAGAAAATACTA 57.050 32.000 6.38 0.00 0.00 1.82
265 266 8.367943 TGAGTACGTGCAAAAGAAAATACTAA 57.632 30.769 6.38 0.00 0.00 2.24
266 267 8.995220 TGAGTACGTGCAAAAGAAAATACTAAT 58.005 29.630 6.38 0.00 0.00 1.73
267 268 9.262472 GAGTACGTGCAAAAGAAAATACTAATG 57.738 33.333 6.38 0.00 0.00 1.90
268 269 8.995220 AGTACGTGCAAAAGAAAATACTAATGA 58.005 29.630 6.38 0.00 0.00 2.57
269 270 9.769093 GTACGTGCAAAAGAAAATACTAATGAT 57.231 29.630 0.00 0.00 0.00 2.45
271 272 9.769093 ACGTGCAAAAGAAAATACTAATGATAC 57.231 29.630 0.00 0.00 0.00 2.24
272 273 9.988350 CGTGCAAAAGAAAATACTAATGATACT 57.012 29.630 0.00 0.00 0.00 2.12
298 299 4.959631 CGTTACAACGTGTAAGTGTGAT 57.040 40.909 6.34 0.00 42.78 3.06
300 301 5.825484 CGTTACAACGTGTAAGTGTGATAC 58.175 41.667 6.34 1.78 42.78 2.24
301 302 5.626543 CGTTACAACGTGTAAGTGTGATACT 59.373 40.000 6.34 0.00 42.78 2.12
303 304 7.306167 CGTTACAACGTGTAAGTGTGATACTTT 60.306 37.037 0.00 0.00 45.65 2.66
316 317 8.340618 AGTGTGATACTTTCATGCAATTAACT 57.659 30.769 0.00 0.00 35.67 2.24
317 318 8.454106 AGTGTGATACTTTCATGCAATTAACTC 58.546 33.333 0.00 0.00 35.67 3.01
318 319 7.426456 GTGTGATACTTTCATGCAATTAACTCG 59.574 37.037 0.00 0.00 36.54 4.18
319 320 6.907212 GTGATACTTTCATGCAATTAACTCGG 59.093 38.462 0.00 0.00 36.54 4.63
320 321 6.821160 TGATACTTTCATGCAATTAACTCGGA 59.179 34.615 0.00 0.00 0.00 4.55
321 322 7.498900 TGATACTTTCATGCAATTAACTCGGAT 59.501 33.333 0.00 0.00 0.00 4.18
322 323 6.515272 ACTTTCATGCAATTAACTCGGATT 57.485 33.333 0.00 0.00 0.00 3.01
323 324 7.624360 ACTTTCATGCAATTAACTCGGATTA 57.376 32.000 0.00 0.00 0.00 1.75
324 325 8.050778 ACTTTCATGCAATTAACTCGGATTAA 57.949 30.769 0.00 0.00 0.00 1.40
325 326 8.184192 ACTTTCATGCAATTAACTCGGATTAAG 58.816 33.333 0.00 0.00 0.00 1.85
326 327 7.624360 TTCATGCAATTAACTCGGATTAAGT 57.376 32.000 0.00 0.00 0.00 2.24
327 328 7.624360 TCATGCAATTAACTCGGATTAAGTT 57.376 32.000 0.00 0.00 40.06 2.66
328 329 7.693952 TCATGCAATTAACTCGGATTAAGTTC 58.306 34.615 0.00 0.00 38.00 3.01
329 330 6.102006 TGCAATTAACTCGGATTAAGTTCG 57.898 37.500 0.00 0.00 38.00 3.95
330 331 5.640357 TGCAATTAACTCGGATTAAGTTCGT 59.360 36.000 0.00 0.00 38.00 3.85
331 332 5.957796 GCAATTAACTCGGATTAAGTTCGTG 59.042 40.000 0.00 0.00 38.00 4.35
332 333 6.401796 GCAATTAACTCGGATTAAGTTCGTGT 60.402 38.462 0.00 0.00 38.00 4.49
333 334 6.882458 ATTAACTCGGATTAAGTTCGTGTC 57.118 37.500 0.00 0.00 38.00 3.67
334 335 2.860062 ACTCGGATTAAGTTCGTGTCG 58.140 47.619 0.00 0.00 0.00 4.35
335 336 2.182825 CTCGGATTAAGTTCGTGTCGG 58.817 52.381 0.00 0.00 0.00 4.79
336 337 1.541147 TCGGATTAAGTTCGTGTCGGT 59.459 47.619 0.00 0.00 0.00 4.69
337 338 1.652124 CGGATTAAGTTCGTGTCGGTG 59.348 52.381 0.00 0.00 0.00 4.94
338 339 2.680577 GGATTAAGTTCGTGTCGGTGT 58.319 47.619 0.00 0.00 0.00 4.16
339 340 3.062042 GGATTAAGTTCGTGTCGGTGTT 58.938 45.455 0.00 0.00 0.00 3.32
340 341 3.495753 GGATTAAGTTCGTGTCGGTGTTT 59.504 43.478 0.00 0.00 0.00 2.83
341 342 3.929417 TTAAGTTCGTGTCGGTGTTTG 57.071 42.857 0.00 0.00 0.00 2.93
342 343 1.729284 AAGTTCGTGTCGGTGTTTGT 58.271 45.000 0.00 0.00 0.00 2.83
343 344 1.729284 AGTTCGTGTCGGTGTTTGTT 58.271 45.000 0.00 0.00 0.00 2.83
344 345 1.395608 AGTTCGTGTCGGTGTTTGTTG 59.604 47.619 0.00 0.00 0.00 3.33
345 346 1.394227 GTTCGTGTCGGTGTTTGTTGA 59.606 47.619 0.00 0.00 0.00 3.18
346 347 1.282817 TCGTGTCGGTGTTTGTTGAG 58.717 50.000 0.00 0.00 0.00 3.02
371 372 3.462678 GGCCACGGAGGAGGAGAC 61.463 72.222 0.00 0.00 41.22 3.36
417 418 2.095110 TCGTGAATGAGCTGCCATTTTG 60.095 45.455 14.58 9.51 36.93 2.44
424 425 1.976474 GCTGCCATTTTGGGGTCGA 60.976 57.895 0.00 0.00 38.19 4.20
499 500 2.958543 CGAGCGCACGATGCAGAT 60.959 61.111 23.01 0.00 45.36 2.90
500 501 2.624811 GAGCGCACGATGCAGATG 59.375 61.111 11.47 0.00 45.36 2.90
501 502 3.503336 GAGCGCACGATGCAGATGC 62.503 63.158 11.47 9.06 45.36 3.91
513 514 0.593618 GCAGATGCAGATGCTGATGG 59.406 55.000 16.47 0.00 42.66 3.51
524 525 4.393371 CAGATGCTGATGGTGATGATGATC 59.607 45.833 0.00 0.00 32.44 2.92
528 529 3.676093 CTGATGGTGATGATGATCAGGG 58.324 50.000 0.09 0.00 39.36 4.45
540 541 1.635663 GATCAGGGCACGAACCAACG 61.636 60.000 0.00 0.00 39.31 4.10
573 583 2.333222 CGTACTGACGCACGTACAC 58.667 57.895 0.00 0.00 43.21 2.90
587 607 3.306973 CACGTACACACATGATGATGGAC 59.693 47.826 0.00 3.13 33.39 4.02
635 655 2.052104 CCGGCCCACCTGAATTTCC 61.052 63.158 0.00 0.00 0.00 3.13
653 673 0.944386 CCATTTCATAACGAGGGCCG 59.056 55.000 0.00 0.00 45.44 6.13
658 678 0.458889 TCATAACGAGGGCCGAAACG 60.459 55.000 0.00 5.90 41.76 3.60
659 679 1.812507 ATAACGAGGGCCGAAACGC 60.813 57.895 13.20 0.00 41.76 4.84
669 689 3.550992 CGAAACGCCCGGACGATG 61.551 66.667 19.78 0.00 36.70 3.84
670 690 3.861263 GAAACGCCCGGACGATGC 61.861 66.667 19.78 0.00 36.70 3.91
671 691 4.690719 AAACGCCCGGACGATGCA 62.691 61.111 19.78 0.00 36.70 3.96
683 778 2.592861 GATGCAGCCCGGATGGAC 60.593 66.667 0.73 0.00 37.49 4.02
733 837 3.169099 CTCCTCCTTCTTCTTCTCCACA 58.831 50.000 0.00 0.00 0.00 4.17
786 900 4.121691 CCATTCTCGGCTCAGCAG 57.878 61.111 0.00 0.00 0.00 4.24
838 955 3.713615 GCTCAGCAAGCGCATGACG 62.714 63.158 18.15 6.09 42.21 4.35
885 1004 2.122729 TGAGGGTGAGGGTGAGGG 59.877 66.667 0.00 0.00 0.00 4.30
897 1016 4.465446 TGAGGGAGAGGGAGGGCG 62.465 72.222 0.00 0.00 0.00 6.13
975 1229 1.521681 GGCGGTCTTCATTCCTCCG 60.522 63.158 0.00 0.00 43.37 4.63
980 1234 1.137282 GGTCTTCATTCCTCCGACCTC 59.863 57.143 0.00 0.00 40.67 3.85
1132 1405 2.826702 GACCCTCCACGGTGTGTT 59.173 61.111 7.45 0.00 35.79 3.32
1141 1414 0.307760 CACGGTGTGTTTTCTGCTCC 59.692 55.000 0.00 0.00 0.00 4.70
1170 1443 1.074405 AGCAAGAAGAAGGATGCCACA 59.926 47.619 0.00 0.00 39.59 4.17
1171 1444 1.200948 GCAAGAAGAAGGATGCCACAC 59.799 52.381 0.00 0.00 32.73 3.82
1172 1445 2.507484 CAAGAAGAAGGATGCCACACA 58.493 47.619 0.00 0.00 0.00 3.72
1229 1508 1.527370 CTCCCCATTTCCGACCTCC 59.473 63.158 0.00 0.00 0.00 4.30
1416 1705 3.066814 GACCTGAGGGCGTACGGT 61.067 66.667 18.39 3.92 35.63 4.83
1626 1919 1.242076 GCAGCAACACAACATCTCCT 58.758 50.000 0.00 0.00 0.00 3.69
1631 1924 2.030805 GCAACACAACATCTCCTTGTCC 60.031 50.000 0.00 0.00 29.02 4.02
1633 1926 3.409026 ACACAACATCTCCTTGTCCTC 57.591 47.619 0.00 0.00 29.02 3.71
1634 1927 2.705658 ACACAACATCTCCTTGTCCTCA 59.294 45.455 0.00 0.00 29.02 3.86
1644 1949 0.109597 CTTGTCCTCATTGCCGTTGC 60.110 55.000 0.00 0.00 38.26 4.17
1651 1956 2.053627 CTCATTGCCGTTGCTGTTTTC 58.946 47.619 0.00 0.00 38.71 2.29
1668 1973 5.636837 TGTTTTCCTTAGATGCGTTTATGC 58.363 37.500 0.00 0.00 0.00 3.14
1716 2024 2.032117 TGCTGTTGCACGATACTTTGTG 60.032 45.455 0.00 0.00 45.31 3.33
1752 2060 8.016497 TGGATGAAACTTGAATAAAAATTGCG 57.984 30.769 0.00 0.00 0.00 4.85
1753 2061 6.955407 GGATGAAACTTGAATAAAAATTGCGC 59.045 34.615 0.00 0.00 0.00 6.09
1754 2062 6.221858 TGAAACTTGAATAAAAATTGCGCC 57.778 33.333 4.18 0.00 0.00 6.53
1755 2063 5.755375 TGAAACTTGAATAAAAATTGCGCCA 59.245 32.000 4.18 0.00 0.00 5.69
1756 2064 6.426328 TGAAACTTGAATAAAAATTGCGCCAT 59.574 30.769 4.18 0.00 0.00 4.40
1757 2065 5.783100 ACTTGAATAAAAATTGCGCCATG 57.217 34.783 4.18 0.00 0.00 3.66
1758 2066 5.237048 ACTTGAATAAAAATTGCGCCATGT 58.763 33.333 4.18 0.00 0.00 3.21
1759 2067 5.700373 ACTTGAATAAAAATTGCGCCATGTT 59.300 32.000 4.18 0.00 0.00 2.71
1760 2068 6.870965 ACTTGAATAAAAATTGCGCCATGTTA 59.129 30.769 4.18 2.61 0.00 2.41
1761 2069 7.386299 ACTTGAATAAAAATTGCGCCATGTTAA 59.614 29.630 4.18 0.00 0.00 2.01
1762 2070 7.054855 TGAATAAAAATTGCGCCATGTTAAC 57.945 32.000 4.18 0.00 0.00 2.01
1763 2071 6.870965 TGAATAAAAATTGCGCCATGTTAACT 59.129 30.769 4.18 0.00 0.00 2.24
1764 2072 7.386299 TGAATAAAAATTGCGCCATGTTAACTT 59.614 29.630 4.18 0.00 0.00 2.66
1765 2073 4.988708 AAAATTGCGCCATGTTAACTTG 57.011 36.364 4.18 13.22 0.00 3.16
1766 2074 3.658757 AATTGCGCCATGTTAACTTGT 57.341 38.095 17.43 0.00 0.00 3.16
1767 2075 3.658757 ATTGCGCCATGTTAACTTGTT 57.341 38.095 17.43 0.00 0.00 2.83
1768 2076 3.444703 TTGCGCCATGTTAACTTGTTT 57.555 38.095 17.43 0.00 0.00 2.83
1769 2077 2.736978 TGCGCCATGTTAACTTGTTTG 58.263 42.857 17.43 9.49 0.00 2.93
1770 2078 1.455408 GCGCCATGTTAACTTGTTTGC 59.545 47.619 17.43 14.13 0.00 3.68
1771 2079 2.862140 GCGCCATGTTAACTTGTTTGCT 60.862 45.455 17.43 0.00 0.00 3.91
1772 2080 2.979813 CGCCATGTTAACTTGTTTGCTC 59.020 45.455 17.43 2.59 0.00 4.26
1773 2081 2.979813 GCCATGTTAACTTGTTTGCTCG 59.020 45.455 17.43 4.63 0.00 5.03
1774 2082 3.564511 CCATGTTAACTTGTTTGCTCGG 58.435 45.455 17.43 0.00 0.00 4.63
1775 2083 3.004315 CCATGTTAACTTGTTTGCTCGGT 59.996 43.478 17.43 0.00 0.00 4.69
1776 2084 3.684103 TGTTAACTTGTTTGCTCGGTG 57.316 42.857 7.22 0.00 0.00 4.94
1777 2085 3.271729 TGTTAACTTGTTTGCTCGGTGA 58.728 40.909 7.22 0.00 0.00 4.02
1778 2086 3.880490 TGTTAACTTGTTTGCTCGGTGAT 59.120 39.130 7.22 0.00 0.00 3.06
1779 2087 4.219033 GTTAACTTGTTTGCTCGGTGATG 58.781 43.478 0.00 0.00 0.00 3.07
1780 2088 2.254546 ACTTGTTTGCTCGGTGATGA 57.745 45.000 0.00 0.00 0.00 2.92
1781 2089 2.146342 ACTTGTTTGCTCGGTGATGAG 58.854 47.619 0.00 0.00 39.05 2.90
1790 2098 2.897436 CTCGGTGATGAGCATTCTTCA 58.103 47.619 0.00 0.00 35.74 3.02
1791 2099 2.864946 CTCGGTGATGAGCATTCTTCAG 59.135 50.000 0.00 0.00 37.94 3.02
1792 2100 2.234661 TCGGTGATGAGCATTCTTCAGT 59.765 45.455 0.00 0.00 37.94 3.41
1793 2101 2.606725 CGGTGATGAGCATTCTTCAGTC 59.393 50.000 0.00 0.00 37.94 3.51
1794 2102 3.678252 CGGTGATGAGCATTCTTCAGTCT 60.678 47.826 0.00 0.00 37.94 3.24
1795 2103 3.870419 GGTGATGAGCATTCTTCAGTCTC 59.130 47.826 0.00 0.00 37.94 3.36
1796 2104 4.382901 GGTGATGAGCATTCTTCAGTCTCT 60.383 45.833 0.00 0.00 37.94 3.10
1797 2105 5.177326 GTGATGAGCATTCTTCAGTCTCTT 58.823 41.667 0.00 0.00 37.94 2.85
1798 2106 5.063691 GTGATGAGCATTCTTCAGTCTCTTG 59.936 44.000 0.00 0.00 37.94 3.02
1799 2107 3.935315 TGAGCATTCTTCAGTCTCTTGG 58.065 45.455 0.00 0.00 0.00 3.61
1800 2108 3.269178 GAGCATTCTTCAGTCTCTTGGG 58.731 50.000 0.00 0.00 0.00 4.12
1801 2109 2.641815 AGCATTCTTCAGTCTCTTGGGT 59.358 45.455 0.00 0.00 0.00 4.51
1802 2110 3.073650 AGCATTCTTCAGTCTCTTGGGTT 59.926 43.478 0.00 0.00 0.00 4.11
1803 2111 4.287067 AGCATTCTTCAGTCTCTTGGGTTA 59.713 41.667 0.00 0.00 0.00 2.85
1804 2112 5.045286 AGCATTCTTCAGTCTCTTGGGTTAT 60.045 40.000 0.00 0.00 0.00 1.89
1805 2113 5.065731 GCATTCTTCAGTCTCTTGGGTTATG 59.934 44.000 0.00 0.00 0.00 1.90
1806 2114 6.409704 CATTCTTCAGTCTCTTGGGTTATGA 58.590 40.000 0.00 0.00 0.00 2.15
1807 2115 6.627087 TTCTTCAGTCTCTTGGGTTATGAT 57.373 37.500 0.00 0.00 0.00 2.45
1808 2116 6.627087 TCTTCAGTCTCTTGGGTTATGATT 57.373 37.500 0.00 0.00 0.00 2.57
1809 2117 7.020827 TCTTCAGTCTCTTGGGTTATGATTT 57.979 36.000 0.00 0.00 0.00 2.17
1810 2118 8.146053 TCTTCAGTCTCTTGGGTTATGATTTA 57.854 34.615 0.00 0.00 0.00 1.40
1811 2119 8.602424 TCTTCAGTCTCTTGGGTTATGATTTAA 58.398 33.333 0.00 0.00 0.00 1.52
1812 2120 9.401058 CTTCAGTCTCTTGGGTTATGATTTAAT 57.599 33.333 0.00 0.00 0.00 1.40
1852 2160 9.730420 TTGTAGAAAAACAAGAAGCTAATTGAC 57.270 29.630 15.63 4.45 34.50 3.18
1853 2161 8.898761 TGTAGAAAAACAAGAAGCTAATTGACA 58.101 29.630 15.63 6.52 0.00 3.58
1854 2162 9.730420 GTAGAAAAACAAGAAGCTAATTGACAA 57.270 29.630 15.63 0.00 0.00 3.18
1856 2164 9.822185 AGAAAAACAAGAAGCTAATTGACAAAT 57.178 25.926 15.63 0.00 0.00 2.32
1883 2191 9.700831 ATATATTCTACCAAAGCCAGAAAAAGT 57.299 29.630 0.00 0.00 32.38 2.66
1884 2192 5.514274 TTCTACCAAAGCCAGAAAAAGTG 57.486 39.130 0.00 0.00 0.00 3.16
1885 2193 4.532834 TCTACCAAAGCCAGAAAAAGTGT 58.467 39.130 0.00 0.00 0.00 3.55
1886 2194 5.686753 TCTACCAAAGCCAGAAAAAGTGTA 58.313 37.500 0.00 0.00 0.00 2.90
1887 2195 4.918810 ACCAAAGCCAGAAAAAGTGTAG 57.081 40.909 0.00 0.00 0.00 2.74
1888 2196 3.636764 ACCAAAGCCAGAAAAAGTGTAGG 59.363 43.478 0.00 0.00 0.00 3.18
1889 2197 3.552890 CCAAAGCCAGAAAAAGTGTAGGC 60.553 47.826 0.00 0.00 42.31 3.93
1890 2198 2.656947 AGCCAGAAAAAGTGTAGGCA 57.343 45.000 0.00 0.00 44.34 4.75
1891 2199 2.508526 AGCCAGAAAAAGTGTAGGCAG 58.491 47.619 0.00 0.00 44.34 4.85
1892 2200 2.158608 AGCCAGAAAAAGTGTAGGCAGT 60.159 45.455 0.00 0.00 44.34 4.40
1893 2201 2.623416 GCCAGAAAAAGTGTAGGCAGTT 59.377 45.455 0.00 0.00 41.63 3.16
1894 2202 3.068165 GCCAGAAAAAGTGTAGGCAGTTT 59.932 43.478 0.00 0.00 46.77 2.66
1895 2203 4.610945 CCAGAAAAAGTGTAGGCAGTTTG 58.389 43.478 1.78 0.00 44.78 2.93
1896 2204 4.499696 CCAGAAAAAGTGTAGGCAGTTTGG 60.500 45.833 1.78 0.00 44.78 3.28
1897 2205 3.068165 AGAAAAAGTGTAGGCAGTTTGGC 59.932 43.478 1.78 0.00 44.78 4.52
1898 2206 2.065899 AAAGTGTAGGCAGTTTGGCA 57.934 45.000 5.41 0.00 46.46 4.92
1899 2207 2.065899 AAGTGTAGGCAGTTTGGCAA 57.934 45.000 0.00 0.00 46.46 4.52
1900 2208 2.065899 AGTGTAGGCAGTTTGGCAAA 57.934 45.000 8.93 8.93 46.46 3.68
1901 2209 1.681264 AGTGTAGGCAGTTTGGCAAAC 59.319 47.619 30.67 30.67 46.46 2.93
1914 2222 6.285790 GTTTGGCAAACTGAACAAAATAGG 57.714 37.500 30.54 0.00 38.35 2.57
1915 2223 3.988819 TGGCAAACTGAACAAAATAGGC 58.011 40.909 0.00 0.00 0.00 3.93
1916 2224 2.986479 GGCAAACTGAACAAAATAGGCG 59.014 45.455 0.00 0.00 0.00 5.52
1917 2225 3.305064 GGCAAACTGAACAAAATAGGCGA 60.305 43.478 0.00 0.00 0.00 5.54
1918 2226 3.668656 GCAAACTGAACAAAATAGGCGAC 59.331 43.478 0.00 0.00 0.00 5.19
1919 2227 4.791411 GCAAACTGAACAAAATAGGCGACA 60.791 41.667 0.00 0.00 0.00 4.35
1920 2228 5.460646 CAAACTGAACAAAATAGGCGACAT 58.539 37.500 0.00 0.00 0.00 3.06
1921 2229 6.607689 CAAACTGAACAAAATAGGCGACATA 58.392 36.000 0.00 0.00 0.00 2.29
1922 2230 7.250569 CAAACTGAACAAAATAGGCGACATAT 58.749 34.615 0.00 0.00 0.00 1.78
1923 2231 6.363577 ACTGAACAAAATAGGCGACATATG 57.636 37.500 0.00 0.00 0.00 1.78
1924 2232 6.112734 ACTGAACAAAATAGGCGACATATGA 58.887 36.000 10.38 0.00 0.00 2.15
1925 2233 6.597672 ACTGAACAAAATAGGCGACATATGAA 59.402 34.615 10.38 0.00 0.00 2.57
1926 2234 7.120579 ACTGAACAAAATAGGCGACATATGAAA 59.879 33.333 10.38 0.00 0.00 2.69
1927 2235 7.821652 TGAACAAAATAGGCGACATATGAAAA 58.178 30.769 10.38 0.00 0.00 2.29
1928 2236 8.300286 TGAACAAAATAGGCGACATATGAAAAA 58.700 29.630 10.38 0.00 0.00 1.94
1951 2259 8.926715 AAAAGAAAGAAATAGACACCACAAAC 57.073 30.769 0.00 0.00 0.00 2.93
1952 2260 7.639113 AAGAAAGAAATAGACACCACAAACA 57.361 32.000 0.00 0.00 0.00 2.83
1953 2261 7.823745 AGAAAGAAATAGACACCACAAACAT 57.176 32.000 0.00 0.00 0.00 2.71
1954 2262 8.237811 AGAAAGAAATAGACACCACAAACATT 57.762 30.769 0.00 0.00 0.00 2.71
1955 2263 8.352942 AGAAAGAAATAGACACCACAAACATTC 58.647 33.333 0.00 0.00 0.00 2.67
1956 2264 7.581213 AAGAAATAGACACCACAAACATTCA 57.419 32.000 0.00 0.00 0.00 2.57
1957 2265 7.765695 AGAAATAGACACCACAAACATTCAT 57.234 32.000 0.00 0.00 0.00 2.57
1958 2266 8.181904 AGAAATAGACACCACAAACATTCATT 57.818 30.769 0.00 0.00 0.00 2.57
1959 2267 8.084073 AGAAATAGACACCACAAACATTCATTG 58.916 33.333 0.00 0.00 0.00 2.82
1960 2268 6.899393 ATAGACACCACAAACATTCATTGT 57.101 33.333 0.00 0.00 41.50 2.71
1961 2269 7.994425 ATAGACACCACAAACATTCATTGTA 57.006 32.000 0.00 0.00 38.90 2.41
1962 2270 6.072112 AGACACCACAAACATTCATTGTAC 57.928 37.500 0.00 0.00 38.90 2.90
1963 2271 5.009610 AGACACCACAAACATTCATTGTACC 59.990 40.000 0.00 0.00 38.90 3.34
1964 2272 4.646945 ACACCACAAACATTCATTGTACCA 59.353 37.500 0.00 0.00 38.90 3.25
1965 2273 5.127845 ACACCACAAACATTCATTGTACCAA 59.872 36.000 0.00 0.00 38.90 3.67
1966 2274 5.461737 CACCACAAACATTCATTGTACCAAC 59.538 40.000 0.00 0.00 38.90 3.77
1967 2275 5.127845 ACCACAAACATTCATTGTACCAACA 59.872 36.000 0.00 0.00 38.90 3.33
1977 2285 3.462483 TTGTACCAACAAGAAGAGCGA 57.538 42.857 0.00 0.00 40.69 4.93
2015 2325 0.737715 AGGAGACAGCGCGACAAATC 60.738 55.000 12.10 0.70 0.00 2.17
2023 2333 3.002862 ACAGCGCGACAAATCAAAAGTTA 59.997 39.130 12.10 0.00 0.00 2.24
2024 2334 3.971871 CAGCGCGACAAATCAAAAGTTAA 59.028 39.130 12.10 0.00 0.00 2.01
2086 2396 2.127251 CATGTATCGGATCCACACACG 58.873 52.381 13.41 0.73 0.00 4.49
2302 2640 4.006357 GGACACCGCCCCGTGTTA 62.006 66.667 0.91 0.00 46.85 2.41
2303 2641 2.266689 GACACCGCCCCGTGTTAT 59.733 61.111 0.91 0.00 46.85 1.89
2311 2649 0.963355 GCCCCGTGTTATGGCTCAAA 60.963 55.000 0.00 0.00 42.01 2.69
2407 2745 4.142093 GGCATGGATCAGTAGCAACAAAAT 60.142 41.667 0.00 0.00 0.00 1.82
2419 2757 6.961576 GTAGCAACAAAATGTTACTACCACA 58.038 36.000 17.17 0.00 45.07 4.17
2451 2790 3.488090 GGCTTCACGGTAGCGCAC 61.488 66.667 15.35 5.73 39.54 5.34
2452 2791 3.838795 GCTTCACGGTAGCGCACG 61.839 66.667 15.35 14.16 0.00 5.34
2456 2795 0.875040 TTCACGGTAGCGCACGAAAA 60.875 50.000 22.52 13.77 0.00 2.29
2457 2796 1.154727 CACGGTAGCGCACGAAAAC 60.155 57.895 22.52 5.51 0.00 2.43
2461 2800 0.724785 GGTAGCGCACGAAAACAAGC 60.725 55.000 11.47 0.00 0.00 4.01
2565 2908 5.160607 ACGACATAATTTCCTGGAAGACA 57.839 39.130 9.42 0.00 34.07 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.986072 ATTATGCACGGCCACGGCA 62.986 57.895 14.42 14.42 45.42 5.69
6 7 3.209097 ATTATGCACGGCCACGGC 61.209 61.111 2.24 2.97 46.48 5.68
7 8 0.812014 TACATTATGCACGGCCACGG 60.812 55.000 2.24 0.00 46.48 4.94
8 9 6.090861 ATGAATACATTATGCACGGCCACG 62.091 45.833 2.24 0.00 38.77 4.94
9 10 2.616376 TGAATACATTATGCACGGCCAC 59.384 45.455 2.24 0.00 0.00 5.01
10 11 2.924421 TGAATACATTATGCACGGCCA 58.076 42.857 2.24 0.00 0.00 5.36
11 12 3.825308 CATGAATACATTATGCACGGCC 58.175 45.455 0.00 0.00 34.15 6.13
12 13 3.236816 GCATGAATACATTATGCACGGC 58.763 45.455 0.00 0.00 44.88 5.68
13 14 3.481839 CGCATGAATACATTATGCACGG 58.518 45.455 0.00 0.00 45.58 4.94
14 15 2.904319 GCGCATGAATACATTATGCACG 59.096 45.455 0.30 0.00 45.58 5.34
15 16 3.665409 GTGCGCATGAATACATTATGCAC 59.335 43.478 15.91 0.00 45.58 4.57
16 17 3.314635 TGTGCGCATGAATACATTATGCA 59.685 39.130 15.91 0.00 45.58 3.96
17 18 3.887741 TGTGCGCATGAATACATTATGC 58.112 40.909 15.91 0.00 42.75 3.14
30 31 2.114670 GTAGCCCACATGTGCGCAT 61.115 57.895 31.21 20.32 36.88 4.73
31 32 2.745884 GTAGCCCACATGTGCGCA 60.746 61.111 31.21 17.61 36.88 6.09
32 33 3.864686 CGTAGCCCACATGTGCGC 61.865 66.667 24.72 24.72 34.78 6.09
45 46 5.545658 ATTGTATGAAAGTTGGTGCGTAG 57.454 39.130 0.00 0.00 0.00 3.51
46 47 7.618502 ATTATTGTATGAAAGTTGGTGCGTA 57.381 32.000 0.00 0.00 0.00 4.42
47 48 5.950758 TTATTGTATGAAAGTTGGTGCGT 57.049 34.783 0.00 0.00 0.00 5.24
48 49 7.693952 AGTATTATTGTATGAAAGTTGGTGCG 58.306 34.615 0.00 0.00 0.00 5.34
49 50 8.129211 GGAGTATTATTGTATGAAAGTTGGTGC 58.871 37.037 0.00 0.00 0.00 5.01
50 51 9.396022 AGGAGTATTATTGTATGAAAGTTGGTG 57.604 33.333 0.00 0.00 0.00 4.17
51 52 9.975218 AAGGAGTATTATTGTATGAAAGTTGGT 57.025 29.630 0.00 0.00 0.00 3.67
54 55 9.886132 ACGAAGGAGTATTATTGTATGAAAGTT 57.114 29.630 0.00 0.00 0.00 2.66
97 98 9.920946 TCCCTTTATAGTGATCTAAATGCTTTT 57.079 29.630 2.86 2.86 0.00 2.27
98 99 9.566432 CTCCCTTTATAGTGATCTAAATGCTTT 57.434 33.333 0.00 0.00 0.00 3.51
99 100 8.718656 ACTCCCTTTATAGTGATCTAAATGCTT 58.281 33.333 0.00 0.00 0.00 3.91
100 101 8.268878 ACTCCCTTTATAGTGATCTAAATGCT 57.731 34.615 0.00 0.00 0.00 3.79
101 102 9.646427 CTACTCCCTTTATAGTGATCTAAATGC 57.354 37.037 0.00 0.00 0.00 3.56
107 108 9.577222 GAACTACTACTCCCTTTATAGTGATCT 57.423 37.037 0.00 0.00 31.65 2.75
108 109 9.577222 AGAACTACTACTCCCTTTATAGTGATC 57.423 37.037 0.00 0.00 31.65 2.92
109 110 9.357161 CAGAACTACTACTCCCTTTATAGTGAT 57.643 37.037 0.00 0.00 31.65 3.06
110 111 8.334734 ACAGAACTACTACTCCCTTTATAGTGA 58.665 37.037 0.00 0.00 31.65 3.41
111 112 8.407064 CACAGAACTACTACTCCCTTTATAGTG 58.593 40.741 0.00 0.00 31.65 2.74
112 113 8.114743 ACACAGAACTACTACTCCCTTTATAGT 58.885 37.037 0.00 0.00 33.73 2.12
113 114 8.407064 CACACAGAACTACTACTCCCTTTATAG 58.593 40.741 0.00 0.00 0.00 1.31
114 115 7.892241 ACACACAGAACTACTACTCCCTTTATA 59.108 37.037 0.00 0.00 0.00 0.98
115 116 6.724905 ACACACAGAACTACTACTCCCTTTAT 59.275 38.462 0.00 0.00 0.00 1.40
116 117 6.073314 ACACACAGAACTACTACTCCCTTTA 58.927 40.000 0.00 0.00 0.00 1.85
117 118 4.900054 ACACACAGAACTACTACTCCCTTT 59.100 41.667 0.00 0.00 0.00 3.11
118 119 4.481072 ACACACAGAACTACTACTCCCTT 58.519 43.478 0.00 0.00 0.00 3.95
119 120 4.115398 ACACACAGAACTACTACTCCCT 57.885 45.455 0.00 0.00 0.00 4.20
120 121 7.284944 ACATATACACACAGAACTACTACTCCC 59.715 40.741 0.00 0.00 0.00 4.30
121 122 8.223177 ACATATACACACAGAACTACTACTCC 57.777 38.462 0.00 0.00 0.00 3.85
122 123 8.063038 CGACATATACACACAGAACTACTACTC 58.937 40.741 0.00 0.00 0.00 2.59
123 124 7.767659 TCGACATATACACACAGAACTACTACT 59.232 37.037 0.00 0.00 0.00 2.57
124 125 7.913423 TCGACATATACACACAGAACTACTAC 58.087 38.462 0.00 0.00 0.00 2.73
125 126 8.672823 ATCGACATATACACACAGAACTACTA 57.327 34.615 0.00 0.00 0.00 1.82
126 127 6.997239 TCGACATATACACACAGAACTACT 57.003 37.500 0.00 0.00 0.00 2.57
127 128 8.532341 CAAATCGACATATACACACAGAACTAC 58.468 37.037 0.00 0.00 0.00 2.73
128 129 7.704899 CCAAATCGACATATACACACAGAACTA 59.295 37.037 0.00 0.00 0.00 2.24
129 130 6.535150 CCAAATCGACATATACACACAGAACT 59.465 38.462 0.00 0.00 0.00 3.01
130 131 6.705782 CCAAATCGACATATACACACAGAAC 58.294 40.000 0.00 0.00 0.00 3.01
131 132 5.293324 GCCAAATCGACATATACACACAGAA 59.707 40.000 0.00 0.00 0.00 3.02
132 133 4.808895 GCCAAATCGACATATACACACAGA 59.191 41.667 0.00 0.00 0.00 3.41
133 134 4.570369 TGCCAAATCGACATATACACACAG 59.430 41.667 0.00 0.00 0.00 3.66
134 135 4.331443 GTGCCAAATCGACATATACACACA 59.669 41.667 0.00 0.00 0.00 3.72
135 136 4.550063 CGTGCCAAATCGACATATACACAC 60.550 45.833 0.00 0.00 0.00 3.82
136 137 3.553917 CGTGCCAAATCGACATATACACA 59.446 43.478 0.00 0.00 0.00 3.72
137 138 3.799963 TCGTGCCAAATCGACATATACAC 59.200 43.478 0.00 0.00 0.00 2.90
138 139 4.048241 TCGTGCCAAATCGACATATACA 57.952 40.909 0.00 0.00 0.00 2.29
139 140 4.666655 GCATCGTGCCAAATCGACATATAC 60.667 45.833 0.00 0.00 37.42 1.47
140 141 3.431912 GCATCGTGCCAAATCGACATATA 59.568 43.478 0.00 0.00 37.42 0.86
141 142 2.224079 GCATCGTGCCAAATCGACATAT 59.776 45.455 0.00 0.00 37.42 1.78
142 143 1.597195 GCATCGTGCCAAATCGACATA 59.403 47.619 0.00 0.00 37.42 2.29
143 144 0.378257 GCATCGTGCCAAATCGACAT 59.622 50.000 0.00 0.00 37.42 3.06
144 145 1.793581 GCATCGTGCCAAATCGACA 59.206 52.632 0.00 0.00 37.42 4.35
145 146 1.296867 CGCATCGTGCCAAATCGAC 60.297 57.895 0.00 0.00 41.12 4.20
146 147 1.446966 TCGCATCGTGCCAAATCGA 60.447 52.632 0.00 0.00 41.12 3.59
147 148 1.296867 GTCGCATCGTGCCAAATCG 60.297 57.895 4.73 0.00 41.12 3.34
148 149 1.296867 CGTCGCATCGTGCCAAATC 60.297 57.895 4.73 0.00 41.12 2.17
149 150 2.784596 CGTCGCATCGTGCCAAAT 59.215 55.556 4.73 0.00 41.12 2.32
150 151 4.083600 GCGTCGCATCGTGCCAAA 62.084 61.111 13.44 0.00 41.12 3.28
155 156 3.308008 CTCTCGCGTCGCATCGTG 61.308 66.667 18.75 0.00 41.75 4.35
156 157 4.538283 CCTCTCGCGTCGCATCGT 62.538 66.667 18.75 0.00 0.00 3.73
157 158 4.237809 TCCTCTCGCGTCGCATCG 62.238 66.667 18.75 4.54 0.00 3.84
158 159 2.352915 CTCCTCTCGCGTCGCATC 60.353 66.667 18.75 0.00 0.00 3.91
159 160 3.893763 CCTCCTCTCGCGTCGCAT 61.894 66.667 18.75 0.00 0.00 4.73
165 166 4.292178 GATGGGCCTCCTCTCGCG 62.292 72.222 4.53 0.00 0.00 5.87
166 167 4.292178 CGATGGGCCTCCTCTCGC 62.292 72.222 4.53 0.00 34.21 5.03
167 168 1.528542 TACGATGGGCCTCCTCTCG 60.529 63.158 4.53 8.17 41.40 4.04
168 169 0.755698 TGTACGATGGGCCTCCTCTC 60.756 60.000 4.53 0.00 0.00 3.20
169 170 1.043673 GTGTACGATGGGCCTCCTCT 61.044 60.000 4.53 0.00 0.00 3.69
170 171 1.442148 GTGTACGATGGGCCTCCTC 59.558 63.158 4.53 0.00 0.00 3.71
171 172 2.064581 GGTGTACGATGGGCCTCCT 61.065 63.158 4.53 0.00 0.00 3.69
172 173 2.504519 GGTGTACGATGGGCCTCC 59.495 66.667 4.53 0.00 0.00 4.30
183 184 2.159531 TGCATGTACGTACTCGGTGTAC 60.160 50.000 25.12 9.68 45.93 2.90
184 185 2.083002 TGCATGTACGTACTCGGTGTA 58.917 47.619 25.12 14.92 41.85 2.90
185 186 0.883153 TGCATGTACGTACTCGGTGT 59.117 50.000 25.12 3.40 41.85 4.16
186 187 1.852280 CATGCATGTACGTACTCGGTG 59.148 52.381 25.12 18.10 41.85 4.94
187 188 1.801395 GCATGCATGTACGTACTCGGT 60.801 52.381 26.79 7.36 41.85 4.69
188 189 0.852777 GCATGCATGTACGTACTCGG 59.147 55.000 26.79 15.38 41.85 4.63
189 190 1.555477 TGCATGCATGTACGTACTCG 58.445 50.000 26.79 16.86 43.34 4.18
190 191 3.510251 CATGCATGCATGTACGTACTC 57.490 47.619 40.30 14.78 46.20 2.59
203 204 2.650917 CAAGCGAGCGCATGCATG 60.651 61.111 22.70 22.70 46.23 4.06
212 213 3.854459 GCCTACACGCAAGCGAGC 61.854 66.667 22.30 11.19 42.83 5.03
213 214 3.188786 GGCCTACACGCAAGCGAG 61.189 66.667 22.30 15.97 42.83 5.03
214 215 4.752879 GGGCCTACACGCAAGCGA 62.753 66.667 22.30 0.00 42.83 4.93
216 217 3.431725 GTGGGCCTACACGCAAGC 61.432 66.667 15.42 0.00 45.62 4.01
222 223 4.675029 ACGTGCGTGGGCCTACAC 62.675 66.667 20.31 10.48 38.85 2.90
223 224 3.931247 AACGTGCGTGGGCCTACA 61.931 61.111 20.31 0.00 38.85 2.74
224 225 3.419759 CAACGTGCGTGGGCCTAC 61.420 66.667 9.66 9.66 38.85 3.18
225 226 3.583276 CTCAACGTGCGTGGGCCTA 62.583 63.158 4.53 0.00 38.85 3.93
226 227 4.988598 CTCAACGTGCGTGGGCCT 62.989 66.667 4.53 0.00 38.85 5.19
227 228 3.869473 TACTCAACGTGCGTGGGCC 62.869 63.158 0.00 0.00 38.85 5.80
228 229 2.356553 TACTCAACGTGCGTGGGC 60.357 61.111 0.00 0.00 40.52 5.36
229 230 2.369629 CGTACTCAACGTGCGTGGG 61.370 63.158 0.00 0.00 46.72 4.61
230 231 3.143712 CGTACTCAACGTGCGTGG 58.856 61.111 0.00 0.00 46.72 4.94
238 239 7.130269 AGTATTTTCTTTTGCACGTACTCAAC 58.870 34.615 0.00 0.00 0.00 3.18
239 240 7.254227 AGTATTTTCTTTTGCACGTACTCAA 57.746 32.000 0.00 0.00 0.00 3.02
240 241 6.854496 AGTATTTTCTTTTGCACGTACTCA 57.146 33.333 0.00 0.00 0.00 3.41
241 242 9.262472 CATTAGTATTTTCTTTTGCACGTACTC 57.738 33.333 0.00 0.00 0.00 2.59
242 243 8.995220 TCATTAGTATTTTCTTTTGCACGTACT 58.005 29.630 0.00 0.00 0.00 2.73
243 244 9.769093 ATCATTAGTATTTTCTTTTGCACGTAC 57.231 29.630 0.00 0.00 0.00 3.67
245 246 9.769093 GTATCATTAGTATTTTCTTTTGCACGT 57.231 29.630 0.00 0.00 0.00 4.49
246 247 9.988350 AGTATCATTAGTATTTTCTTTTGCACG 57.012 29.630 0.00 0.00 0.00 5.34
275 276 7.943277 AGTATCACACTTACACGTTGTAACGAA 60.943 37.037 22.25 6.84 44.76 3.85
276 277 6.513230 AGTATCACACTTACACGTTGTAACGA 60.513 38.462 22.25 0.00 44.76 3.85
277 278 5.626543 AGTATCACACTTACACGTTGTAACG 59.373 40.000 14.88 14.88 46.34 3.18
278 279 6.998258 AGTATCACACTTACACGTTGTAAC 57.002 37.500 6.52 0.00 37.86 2.50
291 292 8.340618 AGTTAATTGCATGAAAGTATCACACT 57.659 30.769 0.00 0.00 41.93 3.55
292 293 7.426456 CGAGTTAATTGCATGAAAGTATCACAC 59.574 37.037 0.00 0.00 41.93 3.82
293 294 7.413988 CCGAGTTAATTGCATGAAAGTATCACA 60.414 37.037 0.00 0.00 41.93 3.58
294 295 6.907212 CCGAGTTAATTGCATGAAAGTATCAC 59.093 38.462 0.00 0.00 41.93 3.06
295 296 6.821160 TCCGAGTTAATTGCATGAAAGTATCA 59.179 34.615 0.00 0.00 43.67 2.15
296 297 7.246674 TCCGAGTTAATTGCATGAAAGTATC 57.753 36.000 0.00 0.00 0.00 2.24
297 298 7.807977 ATCCGAGTTAATTGCATGAAAGTAT 57.192 32.000 0.00 0.00 0.00 2.12
298 299 7.624360 AATCCGAGTTAATTGCATGAAAGTA 57.376 32.000 0.00 0.00 0.00 2.24
299 300 6.515272 AATCCGAGTTAATTGCATGAAAGT 57.485 33.333 0.00 0.00 0.00 2.66
300 301 8.184192 ACTTAATCCGAGTTAATTGCATGAAAG 58.816 33.333 0.00 0.00 0.00 2.62
301 302 8.050778 ACTTAATCCGAGTTAATTGCATGAAA 57.949 30.769 0.00 0.00 0.00 2.69
302 303 7.624360 ACTTAATCCGAGTTAATTGCATGAA 57.376 32.000 0.00 0.00 0.00 2.57
303 304 7.465379 CGAACTTAATCCGAGTTAATTGCATGA 60.465 37.037 0.00 0.00 37.46 3.07
304 305 6.628856 CGAACTTAATCCGAGTTAATTGCATG 59.371 38.462 0.00 0.00 37.46 4.06
305 306 6.315393 ACGAACTTAATCCGAGTTAATTGCAT 59.685 34.615 0.00 0.00 37.46 3.96
306 307 5.640357 ACGAACTTAATCCGAGTTAATTGCA 59.360 36.000 0.00 0.00 37.46 4.08
307 308 5.957796 CACGAACTTAATCCGAGTTAATTGC 59.042 40.000 0.00 0.00 37.46 3.56
308 309 7.057149 ACACGAACTTAATCCGAGTTAATTG 57.943 36.000 0.00 0.00 37.46 2.32
309 310 6.034256 CGACACGAACTTAATCCGAGTTAATT 59.966 38.462 0.00 0.00 37.46 1.40
310 311 5.514204 CGACACGAACTTAATCCGAGTTAAT 59.486 40.000 0.00 0.00 37.46 1.40
311 312 4.853196 CGACACGAACTTAATCCGAGTTAA 59.147 41.667 0.00 0.00 37.46 2.01
312 313 4.406069 CGACACGAACTTAATCCGAGTTA 58.594 43.478 0.00 0.00 37.46 2.24
313 314 3.240069 CGACACGAACTTAATCCGAGTT 58.760 45.455 0.00 0.00 39.90 3.01
314 315 2.415090 CCGACACGAACTTAATCCGAGT 60.415 50.000 0.00 0.00 0.00 4.18
315 316 2.182825 CCGACACGAACTTAATCCGAG 58.817 52.381 0.00 0.00 0.00 4.63
316 317 1.541147 ACCGACACGAACTTAATCCGA 59.459 47.619 0.00 0.00 0.00 4.55
317 318 1.652124 CACCGACACGAACTTAATCCG 59.348 52.381 0.00 0.00 0.00 4.18
318 319 2.680577 ACACCGACACGAACTTAATCC 58.319 47.619 0.00 0.00 0.00 3.01
319 320 4.025480 ACAAACACCGACACGAACTTAATC 60.025 41.667 0.00 0.00 0.00 1.75
320 321 3.872771 ACAAACACCGACACGAACTTAAT 59.127 39.130 0.00 0.00 0.00 1.40
321 322 3.260740 ACAAACACCGACACGAACTTAA 58.739 40.909 0.00 0.00 0.00 1.85
322 323 2.891112 ACAAACACCGACACGAACTTA 58.109 42.857 0.00 0.00 0.00 2.24
323 324 1.729284 ACAAACACCGACACGAACTT 58.271 45.000 0.00 0.00 0.00 2.66
324 325 1.395608 CAACAAACACCGACACGAACT 59.604 47.619 0.00 0.00 0.00 3.01
325 326 1.394227 TCAACAAACACCGACACGAAC 59.606 47.619 0.00 0.00 0.00 3.95
326 327 1.661617 CTCAACAAACACCGACACGAA 59.338 47.619 0.00 0.00 0.00 3.85
327 328 1.282817 CTCAACAAACACCGACACGA 58.717 50.000 0.00 0.00 0.00 4.35
328 329 0.303493 CCTCAACAAACACCGACACG 59.697 55.000 0.00 0.00 0.00 4.49
329 330 0.028902 GCCTCAACAAACACCGACAC 59.971 55.000 0.00 0.00 0.00 3.67
330 331 1.433053 CGCCTCAACAAACACCGACA 61.433 55.000 0.00 0.00 0.00 4.35
331 332 1.278637 CGCCTCAACAAACACCGAC 59.721 57.895 0.00 0.00 0.00 4.79
332 333 1.153329 ACGCCTCAACAAACACCGA 60.153 52.632 0.00 0.00 0.00 4.69
333 334 1.010125 CACGCCTCAACAAACACCG 60.010 57.895 0.00 0.00 0.00 4.94
334 335 0.307760 CTCACGCCTCAACAAACACC 59.692 55.000 0.00 0.00 0.00 4.16
335 336 0.307760 CCTCACGCCTCAACAAACAC 59.692 55.000 0.00 0.00 0.00 3.32
336 337 0.817634 CCCTCACGCCTCAACAAACA 60.818 55.000 0.00 0.00 0.00 2.83
337 338 1.949257 CCCTCACGCCTCAACAAAC 59.051 57.895 0.00 0.00 0.00 2.93
338 339 1.896660 GCCCTCACGCCTCAACAAA 60.897 57.895 0.00 0.00 0.00 2.83
339 340 2.281484 GCCCTCACGCCTCAACAA 60.281 61.111 0.00 0.00 0.00 2.83
340 341 4.329545 GGCCCTCACGCCTCAACA 62.330 66.667 0.00 0.00 46.10 3.33
360 361 1.000993 TGCCTCTGTCTCCTCCTCC 59.999 63.158 0.00 0.00 0.00 4.30
371 372 3.795041 CTCCCCTGCCTGCCTCTG 61.795 72.222 0.00 0.00 0.00 3.35
424 425 0.036105 TCATGCTCGCATCTGGTTGT 60.036 50.000 0.58 0.00 33.90 3.32
434 435 2.507992 AGTCGCTGTCATGCTCGC 60.508 61.111 0.00 0.00 0.00 5.03
496 497 1.489230 TCACCATCAGCATCTGCATCT 59.511 47.619 4.79 0.00 45.16 2.90
497 498 1.963172 TCACCATCAGCATCTGCATC 58.037 50.000 4.79 0.00 45.16 3.91
498 499 2.158667 TCATCACCATCAGCATCTGCAT 60.159 45.455 4.79 0.00 45.16 3.96
499 500 1.210967 TCATCACCATCAGCATCTGCA 59.789 47.619 4.79 0.00 45.16 4.41
500 501 1.963172 TCATCACCATCAGCATCTGC 58.037 50.000 0.00 0.00 42.49 4.26
501 502 3.740115 TCATCATCACCATCAGCATCTG 58.260 45.455 0.00 0.00 0.00 2.90
502 503 4.041691 TGATCATCATCACCATCAGCATCT 59.958 41.667 0.00 0.00 33.80 2.90
503 504 4.324267 TGATCATCATCACCATCAGCATC 58.676 43.478 0.00 0.00 33.80 3.91
504 505 4.327680 CTGATCATCATCACCATCAGCAT 58.672 43.478 0.00 0.00 36.76 3.79
505 506 3.496160 CCTGATCATCATCACCATCAGCA 60.496 47.826 0.00 0.00 40.61 4.41
506 507 3.075148 CCTGATCATCATCACCATCAGC 58.925 50.000 0.00 0.00 40.61 4.26
507 508 3.676093 CCCTGATCATCATCACCATCAG 58.324 50.000 0.00 0.00 41.31 2.90
508 509 2.224695 GCCCTGATCATCATCACCATCA 60.225 50.000 0.00 0.00 33.80 3.07
509 510 2.224695 TGCCCTGATCATCATCACCATC 60.225 50.000 0.00 0.00 33.80 3.51
510 511 1.778484 TGCCCTGATCATCATCACCAT 59.222 47.619 0.00 0.00 33.80 3.55
511 512 1.134007 GTGCCCTGATCATCATCACCA 60.134 52.381 0.00 0.00 33.80 4.17
512 513 1.602311 GTGCCCTGATCATCATCACC 58.398 55.000 0.00 0.00 33.80 4.02
513 514 1.202568 TCGTGCCCTGATCATCATCAC 60.203 52.381 0.00 1.93 33.80 3.06
524 525 1.671054 ATCGTTGGTTCGTGCCCTG 60.671 57.895 0.00 0.00 0.00 4.45
540 541 1.445410 TACGTGTGCTCGCACCATC 60.445 57.895 18.35 8.72 45.63 3.51
565 571 3.306973 GTCCATCATCATGTGTGTACGTG 59.693 47.826 0.00 0.00 43.67 4.49
573 583 4.096833 ACAATTTCCGTCCATCATCATGTG 59.903 41.667 0.00 0.00 0.00 3.21
587 607 0.243636 GGAGCCACCAACAATTTCCG 59.756 55.000 0.00 0.00 38.79 4.30
635 655 1.948104 TCGGCCCTCGTTATGAAATG 58.052 50.000 0.00 0.00 40.32 2.32
653 673 3.861263 GCATCGTCCGGGCGTTTC 61.861 66.667 29.96 11.40 0.00 2.78
662 682 4.241555 ATCCGGGCTGCATCGTCC 62.242 66.667 0.00 0.00 0.00 4.79
663 683 2.969238 CATCCGGGCTGCATCGTC 60.969 66.667 0.00 0.00 0.00 4.20
664 684 4.552365 CCATCCGGGCTGCATCGT 62.552 66.667 0.00 0.00 0.00 3.73
665 685 4.240103 TCCATCCGGGCTGCATCG 62.240 66.667 0.00 4.76 36.21 3.84
666 686 2.592861 GTCCATCCGGGCTGCATC 60.593 66.667 0.00 0.00 36.21 3.91
667 687 4.195334 GGTCCATCCGGGCTGCAT 62.195 66.667 0.00 0.00 36.96 3.96
669 689 4.554036 GAGGTCCATCCGGGCTGC 62.554 72.222 0.00 0.00 41.99 5.25
670 690 1.915078 AAAGAGGTCCATCCGGGCTG 61.915 60.000 0.00 0.00 41.99 4.85
671 691 1.208165 AAAAGAGGTCCATCCGGGCT 61.208 55.000 0.00 0.00 41.99 5.19
683 778 2.753452 ACATGCATGCAGAGAAAAGAGG 59.247 45.455 26.69 2.59 0.00 3.69
838 955 0.659957 GCAGAGAATGGACAATCGGC 59.340 55.000 0.00 0.00 0.00 5.54
842 959 1.065926 TCGCTGCAGAGAATGGACAAT 60.066 47.619 20.43 0.00 0.00 2.71
885 1004 4.144727 TCTCCCGCCCTCCCTCTC 62.145 72.222 0.00 0.00 0.00 3.20
1128 1401 1.202940 AGGAAGGGGAGCAGAAAACAC 60.203 52.381 0.00 0.00 0.00 3.32
1132 1405 1.282157 GCTTAGGAAGGGGAGCAGAAA 59.718 52.381 0.00 0.00 35.29 2.52
1141 1414 3.615155 CCTTCTTCTTGCTTAGGAAGGG 58.385 50.000 13.31 7.22 45.28 3.95
1194 1467 4.289410 TGGGGAGGGTAAAGGTAAACTAAC 59.711 45.833 0.00 0.00 0.00 2.34
1342 1631 0.388134 TTGACGTACTTGCTCTCCGC 60.388 55.000 0.00 0.00 39.77 5.54
1557 1846 2.357952 CGACCGTCTCATAATCCTGACA 59.642 50.000 0.00 0.00 0.00 3.58
1558 1847 2.617308 TCGACCGTCTCATAATCCTGAC 59.383 50.000 0.00 0.00 0.00 3.51
1626 1919 0.537143 AGCAACGGCAATGAGGACAA 60.537 50.000 0.00 0.00 44.61 3.18
1631 1924 2.053627 GAAAACAGCAACGGCAATGAG 58.946 47.619 0.00 0.00 44.61 2.90
1633 1926 1.139163 GGAAAACAGCAACGGCAATG 58.861 50.000 0.00 0.00 44.61 2.82
1634 1927 1.039856 AGGAAAACAGCAACGGCAAT 58.960 45.000 0.00 0.00 44.61 3.56
1644 1949 5.739161 GCATAAACGCATCTAAGGAAAACAG 59.261 40.000 0.00 0.00 0.00 3.16
1651 1956 2.031682 GCCAGCATAAACGCATCTAAGG 60.032 50.000 0.00 0.00 0.00 2.69
1668 1973 5.551760 ACAAGATGTAGAAATTTCGCCAG 57.448 39.130 12.42 4.60 0.00 4.85
1712 2020 6.098124 AGTTTCATCCAAATTTCTCACCACAA 59.902 34.615 0.00 0.00 0.00 3.33
1716 2024 6.748132 TCAAGTTTCATCCAAATTTCTCACC 58.252 36.000 0.00 0.00 0.00 4.02
1745 2053 3.988819 ACAAGTTAACATGGCGCAATTT 58.011 36.364 10.83 3.58 0.00 1.82
1746 2054 3.658757 ACAAGTTAACATGGCGCAATT 57.341 38.095 10.83 0.00 0.00 2.32
1747 2055 3.658757 AACAAGTTAACATGGCGCAAT 57.341 38.095 10.83 0.00 0.00 3.56
1748 2056 3.119291 CAAACAAGTTAACATGGCGCAA 58.881 40.909 10.83 0.00 0.00 4.85
1749 2057 2.736978 CAAACAAGTTAACATGGCGCA 58.263 42.857 10.83 0.00 0.00 6.09
1750 2058 1.455408 GCAAACAAGTTAACATGGCGC 59.545 47.619 14.77 0.00 0.00 6.53
1751 2059 2.979813 GAGCAAACAAGTTAACATGGCG 59.020 45.455 14.77 4.36 0.00 5.69
1752 2060 2.979813 CGAGCAAACAAGTTAACATGGC 59.020 45.455 14.77 8.70 0.00 4.40
1753 2061 3.004315 ACCGAGCAAACAAGTTAACATGG 59.996 43.478 14.77 3.10 0.00 3.66
1754 2062 3.974401 CACCGAGCAAACAAGTTAACATG 59.026 43.478 8.61 8.93 0.00 3.21
1755 2063 3.880490 TCACCGAGCAAACAAGTTAACAT 59.120 39.130 8.61 0.00 0.00 2.71
1756 2064 3.271729 TCACCGAGCAAACAAGTTAACA 58.728 40.909 8.61 0.00 0.00 2.41
1757 2065 3.955771 TCACCGAGCAAACAAGTTAAC 57.044 42.857 0.00 0.00 0.00 2.01
1758 2066 4.130857 TCATCACCGAGCAAACAAGTTAA 58.869 39.130 0.00 0.00 0.00 2.01
1759 2067 3.734463 TCATCACCGAGCAAACAAGTTA 58.266 40.909 0.00 0.00 0.00 2.24
1760 2068 2.549754 CTCATCACCGAGCAAACAAGTT 59.450 45.455 0.00 0.00 0.00 2.66
1761 2069 2.146342 CTCATCACCGAGCAAACAAGT 58.854 47.619 0.00 0.00 0.00 3.16
1762 2070 2.888513 CTCATCACCGAGCAAACAAG 57.111 50.000 0.00 0.00 0.00 3.16
1770 2078 2.864946 CTGAAGAATGCTCATCACCGAG 59.135 50.000 0.00 0.00 36.02 4.63
1771 2079 2.234661 ACTGAAGAATGCTCATCACCGA 59.765 45.455 0.00 0.00 0.00 4.69
1772 2080 2.606725 GACTGAAGAATGCTCATCACCG 59.393 50.000 0.00 0.00 0.00 4.94
1773 2081 3.870419 GAGACTGAAGAATGCTCATCACC 59.130 47.826 0.00 0.00 0.00 4.02
1774 2082 4.757594 AGAGACTGAAGAATGCTCATCAC 58.242 43.478 0.00 0.00 0.00 3.06
1775 2083 5.176592 CAAGAGACTGAAGAATGCTCATCA 58.823 41.667 0.00 0.00 0.00 3.07
1776 2084 4.571580 CCAAGAGACTGAAGAATGCTCATC 59.428 45.833 0.00 0.00 0.00 2.92
1777 2085 4.515361 CCAAGAGACTGAAGAATGCTCAT 58.485 43.478 0.00 0.00 0.00 2.90
1778 2086 3.307269 CCCAAGAGACTGAAGAATGCTCA 60.307 47.826 0.00 0.00 0.00 4.26
1779 2087 3.269178 CCCAAGAGACTGAAGAATGCTC 58.731 50.000 0.00 0.00 0.00 4.26
1780 2088 2.641815 ACCCAAGAGACTGAAGAATGCT 59.358 45.455 0.00 0.00 0.00 3.79
1781 2089 3.064900 ACCCAAGAGACTGAAGAATGC 57.935 47.619 0.00 0.00 0.00 3.56
1782 2090 6.409704 TCATAACCCAAGAGACTGAAGAATG 58.590 40.000 0.00 0.00 0.00 2.67
1783 2091 6.627087 TCATAACCCAAGAGACTGAAGAAT 57.373 37.500 0.00 0.00 0.00 2.40
1784 2092 6.627087 ATCATAACCCAAGAGACTGAAGAA 57.373 37.500 0.00 0.00 0.00 2.52
1785 2093 6.627087 AATCATAACCCAAGAGACTGAAGA 57.373 37.500 0.00 0.00 0.00 2.87
1786 2094 8.792830 TTAAATCATAACCCAAGAGACTGAAG 57.207 34.615 0.00 0.00 0.00 3.02
1826 2134 9.730420 GTCAATTAGCTTCTTGTTTTTCTACAA 57.270 29.630 0.00 0.00 36.63 2.41
1827 2135 8.898761 TGTCAATTAGCTTCTTGTTTTTCTACA 58.101 29.630 0.00 0.00 0.00 2.74
1828 2136 9.730420 TTGTCAATTAGCTTCTTGTTTTTCTAC 57.270 29.630 0.00 0.00 0.00 2.59
1830 2138 9.822185 ATTTGTCAATTAGCTTCTTGTTTTTCT 57.178 25.926 0.00 0.00 0.00 2.52
1857 2165 9.700831 ACTTTTTCTGGCTTTGGTAGAATATAT 57.299 29.630 0.00 0.00 31.21 0.86
1858 2166 8.956426 CACTTTTTCTGGCTTTGGTAGAATATA 58.044 33.333 0.00 0.00 31.21 0.86
1859 2167 7.451566 ACACTTTTTCTGGCTTTGGTAGAATAT 59.548 33.333 0.00 0.00 31.21 1.28
1860 2168 6.775629 ACACTTTTTCTGGCTTTGGTAGAATA 59.224 34.615 0.00 0.00 31.21 1.75
1861 2169 5.598417 ACACTTTTTCTGGCTTTGGTAGAAT 59.402 36.000 0.00 0.00 31.21 2.40
1862 2170 4.953579 ACACTTTTTCTGGCTTTGGTAGAA 59.046 37.500 0.00 0.00 0.00 2.10
1863 2171 4.532834 ACACTTTTTCTGGCTTTGGTAGA 58.467 39.130 0.00 0.00 0.00 2.59
1864 2172 4.918810 ACACTTTTTCTGGCTTTGGTAG 57.081 40.909 0.00 0.00 0.00 3.18
1865 2173 4.825085 CCTACACTTTTTCTGGCTTTGGTA 59.175 41.667 0.00 0.00 0.00 3.25
1866 2174 3.636764 CCTACACTTTTTCTGGCTTTGGT 59.363 43.478 0.00 0.00 0.00 3.67
1867 2175 3.552890 GCCTACACTTTTTCTGGCTTTGG 60.553 47.826 0.00 0.00 37.58 3.28
1868 2176 3.068024 TGCCTACACTTTTTCTGGCTTTG 59.932 43.478 0.00 0.00 40.82 2.77
1869 2177 3.295973 TGCCTACACTTTTTCTGGCTTT 58.704 40.909 0.00 0.00 40.82 3.51
1870 2178 2.887152 CTGCCTACACTTTTTCTGGCTT 59.113 45.455 0.00 0.00 40.82 4.35
1871 2179 2.158608 ACTGCCTACACTTTTTCTGGCT 60.159 45.455 0.00 0.00 40.82 4.75
1872 2180 2.230660 ACTGCCTACACTTTTTCTGGC 58.769 47.619 0.00 0.00 40.62 4.85
1873 2181 4.499696 CCAAACTGCCTACACTTTTTCTGG 60.500 45.833 0.00 0.00 0.00 3.86
1874 2182 4.610945 CCAAACTGCCTACACTTTTTCTG 58.389 43.478 0.00 0.00 0.00 3.02
1875 2183 3.068165 GCCAAACTGCCTACACTTTTTCT 59.932 43.478 0.00 0.00 0.00 2.52
1876 2184 3.181480 TGCCAAACTGCCTACACTTTTTC 60.181 43.478 0.00 0.00 0.00 2.29
1877 2185 2.763448 TGCCAAACTGCCTACACTTTTT 59.237 40.909 0.00 0.00 0.00 1.94
1878 2186 2.383855 TGCCAAACTGCCTACACTTTT 58.616 42.857 0.00 0.00 0.00 2.27
1879 2187 2.065899 TGCCAAACTGCCTACACTTT 57.934 45.000 0.00 0.00 0.00 2.66
1880 2188 2.065899 TTGCCAAACTGCCTACACTT 57.934 45.000 0.00 0.00 0.00 3.16
1881 2189 1.681264 GTTTGCCAAACTGCCTACACT 59.319 47.619 12.98 0.00 38.35 3.55
1882 2190 2.134201 GTTTGCCAAACTGCCTACAC 57.866 50.000 12.98 0.00 38.35 2.90
1891 2199 5.277297 GCCTATTTTGTTCAGTTTGCCAAAC 60.277 40.000 12.37 12.37 41.69 2.93
1892 2200 4.813697 GCCTATTTTGTTCAGTTTGCCAAA 59.186 37.500 0.00 0.00 0.00 3.28
1893 2201 4.376146 GCCTATTTTGTTCAGTTTGCCAA 58.624 39.130 0.00 0.00 0.00 4.52
1894 2202 3.551863 CGCCTATTTTGTTCAGTTTGCCA 60.552 43.478 0.00 0.00 0.00 4.92
1895 2203 2.986479 CGCCTATTTTGTTCAGTTTGCC 59.014 45.455 0.00 0.00 0.00 4.52
1896 2204 3.668656 GTCGCCTATTTTGTTCAGTTTGC 59.331 43.478 0.00 0.00 0.00 3.68
1897 2205 4.854399 TGTCGCCTATTTTGTTCAGTTTG 58.146 39.130 0.00 0.00 0.00 2.93
1898 2206 5.705609 ATGTCGCCTATTTTGTTCAGTTT 57.294 34.783 0.00 0.00 0.00 2.66
1899 2207 6.597672 TCATATGTCGCCTATTTTGTTCAGTT 59.402 34.615 1.90 0.00 0.00 3.16
1900 2208 6.112734 TCATATGTCGCCTATTTTGTTCAGT 58.887 36.000 1.90 0.00 0.00 3.41
1901 2209 6.603237 TCATATGTCGCCTATTTTGTTCAG 57.397 37.500 1.90 0.00 0.00 3.02
1902 2210 6.993786 TTCATATGTCGCCTATTTTGTTCA 57.006 33.333 1.90 0.00 0.00 3.18
1903 2211 8.682128 TTTTTCATATGTCGCCTATTTTGTTC 57.318 30.769 1.90 0.00 0.00 3.18
1925 2233 9.366216 GTTTGTGGTGTCTATTTCTTTCTTTTT 57.634 29.630 0.00 0.00 0.00 1.94
1926 2234 8.527810 TGTTTGTGGTGTCTATTTCTTTCTTTT 58.472 29.630 0.00 0.00 0.00 2.27
1927 2235 8.062065 TGTTTGTGGTGTCTATTTCTTTCTTT 57.938 30.769 0.00 0.00 0.00 2.52
1928 2236 7.639113 TGTTTGTGGTGTCTATTTCTTTCTT 57.361 32.000 0.00 0.00 0.00 2.52
1929 2237 7.823745 ATGTTTGTGGTGTCTATTTCTTTCT 57.176 32.000 0.00 0.00 0.00 2.52
1930 2238 8.134895 TGAATGTTTGTGGTGTCTATTTCTTTC 58.865 33.333 0.00 0.00 0.00 2.62
1931 2239 8.006298 TGAATGTTTGTGGTGTCTATTTCTTT 57.994 30.769 0.00 0.00 0.00 2.52
1932 2240 7.581213 TGAATGTTTGTGGTGTCTATTTCTT 57.419 32.000 0.00 0.00 0.00 2.52
1933 2241 7.765695 ATGAATGTTTGTGGTGTCTATTTCT 57.234 32.000 0.00 0.00 0.00 2.52
1934 2242 7.867403 ACAATGAATGTTTGTGGTGTCTATTTC 59.133 33.333 0.00 0.00 40.06 2.17
1935 2243 7.725251 ACAATGAATGTTTGTGGTGTCTATTT 58.275 30.769 0.00 0.00 40.06 1.40
1936 2244 7.288810 ACAATGAATGTTTGTGGTGTCTATT 57.711 32.000 0.00 0.00 40.06 1.73
1937 2245 6.899393 ACAATGAATGTTTGTGGTGTCTAT 57.101 33.333 0.00 0.00 40.06 1.98
1938 2246 6.205853 GGTACAATGAATGTTTGTGGTGTCTA 59.794 38.462 0.00 0.00 43.63 2.59
1939 2247 5.009610 GGTACAATGAATGTTTGTGGTGTCT 59.990 40.000 0.00 0.00 43.63 3.41
1940 2248 5.219633 GGTACAATGAATGTTTGTGGTGTC 58.780 41.667 0.00 0.00 43.63 3.67
1941 2249 4.646945 TGGTACAATGAATGTTTGTGGTGT 59.353 37.500 0.00 0.00 43.63 4.16
1942 2250 5.193663 TGGTACAATGAATGTTTGTGGTG 57.806 39.130 0.00 0.00 43.63 4.17
1958 2266 2.626266 TCTCGCTCTTCTTGTTGGTACA 59.374 45.455 0.00 0.00 0.00 2.90
1959 2267 3.299340 TCTCGCTCTTCTTGTTGGTAC 57.701 47.619 0.00 0.00 0.00 3.34
1960 2268 4.495422 GATTCTCGCTCTTCTTGTTGGTA 58.505 43.478 0.00 0.00 0.00 3.25
1961 2269 2.910688 TTCTCGCTCTTCTTGTTGGT 57.089 45.000 0.00 0.00 0.00 3.67
1962 2270 2.346847 CGATTCTCGCTCTTCTTGTTGG 59.653 50.000 0.00 0.00 31.14 3.77
1963 2271 2.989840 ACGATTCTCGCTCTTCTTGTTG 59.010 45.455 0.00 0.00 45.12 3.33
1964 2272 3.305398 ACGATTCTCGCTCTTCTTGTT 57.695 42.857 0.00 0.00 45.12 2.83
1965 2273 3.246619 GAACGATTCTCGCTCTTCTTGT 58.753 45.455 0.00 0.00 45.12 3.16
1966 2274 2.600867 GGAACGATTCTCGCTCTTCTTG 59.399 50.000 0.00 0.00 45.12 3.02
1967 2275 2.231478 TGGAACGATTCTCGCTCTTCTT 59.769 45.455 0.00 0.00 45.12 2.52
1968 2276 1.819288 TGGAACGATTCTCGCTCTTCT 59.181 47.619 0.00 0.00 45.12 2.85
1969 2277 1.921230 GTGGAACGATTCTCGCTCTTC 59.079 52.381 0.00 0.00 45.12 2.87
1970 2278 1.272490 TGTGGAACGATTCTCGCTCTT 59.728 47.619 0.00 0.00 45.12 2.85
1971 2279 0.888619 TGTGGAACGATTCTCGCTCT 59.111 50.000 0.00 0.00 45.12 4.09
1972 2280 0.992802 GTGTGGAACGATTCTCGCTC 59.007 55.000 0.00 0.00 45.12 5.03
1973 2281 0.603569 AGTGTGGAACGATTCTCGCT 59.396 50.000 0.00 0.00 45.12 4.93
1974 2282 1.390463 GAAGTGTGGAACGATTCTCGC 59.610 52.381 0.00 0.00 45.12 5.03
1975 2283 1.993370 GGAAGTGTGGAACGATTCTCG 59.007 52.381 0.00 0.00 46.93 4.04
1976 2284 2.996621 CTGGAAGTGTGGAACGATTCTC 59.003 50.000 0.00 0.00 42.39 2.87
1977 2285 2.289694 CCTGGAAGTGTGGAACGATTCT 60.290 50.000 0.00 0.00 42.39 2.40
2023 2333 8.600449 TTTTGTTGAAGAGTTTTGACACATTT 57.400 26.923 0.00 0.00 0.00 2.32
2024 2334 8.600449 TTTTTGTTGAAGAGTTTTGACACATT 57.400 26.923 0.00 0.00 0.00 2.71
2074 2384 1.596752 TGTGTGCGTGTGTGGATCC 60.597 57.895 4.20 4.20 0.00 3.36
2086 2396 1.502231 AGATTGACGAGTGTGTGTGC 58.498 50.000 0.00 0.00 0.00 4.57
2298 2636 4.529897 AGCATCATCTTTGAGCCATAACA 58.470 39.130 0.00 0.00 34.73 2.41
2300 2638 4.820173 CAGAGCATCATCTTTGAGCCATAA 59.180 41.667 0.00 0.00 37.82 1.90
2302 2640 3.215151 CAGAGCATCATCTTTGAGCCAT 58.785 45.455 0.00 0.00 37.82 4.40
2303 2641 2.640184 CAGAGCATCATCTTTGAGCCA 58.360 47.619 0.00 0.00 37.82 4.75
2311 2649 1.980784 AAGCCGCCAGAGCATCATCT 61.981 55.000 0.00 0.00 39.83 2.90
2407 2745 0.319083 CACGCCCTGTGGTAGTAACA 59.681 55.000 0.00 0.00 45.21 2.41
2431 2769 4.832608 CGCTACCGTGAAGCCCCC 62.833 72.222 0.00 0.00 36.60 5.40
2450 2789 1.279840 GAGCGCTGCTTGTTTTCGT 59.720 52.632 18.48 0.00 39.88 3.85
2451 2790 1.441016 GGAGCGCTGCTTGTTTTCG 60.441 57.895 22.85 0.00 39.88 3.46
2452 2791 0.242017 ATGGAGCGCTGCTTGTTTTC 59.758 50.000 29.46 4.61 39.88 2.29
2456 2795 2.816958 CGATGGAGCGCTGCTTGT 60.817 61.111 29.46 15.48 39.88 3.16
2457 2796 2.816958 ACGATGGAGCGCTGCTTG 60.817 61.111 29.46 20.04 39.88 4.01
2461 2800 1.875813 GTCTCACGATGGAGCGCTG 60.876 63.158 18.48 1.17 34.84 5.18
2565 2908 2.264166 GCGCAGGAGCTCAGTCTT 59.736 61.111 17.19 0.00 39.10 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.