>input_sequence_74529
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-----------------------------------------------------ATGGAATCGGTGAGCTCCGGCGACGGC
TATCCCCAGCTACGGACGACCGTC-------------------GGCCAGCGCGGGCTCAGTCGGCACGGCGCCGACGACC
CTCGGCTTGGAGCTCGCCCTCGCCCGCGACCCTCCACGGTGTGTTTTCTGCTCCCCTTCCTAAGCAAGAAGAAGGATGCC
ACACACCCGTTCGCCGTAGGCTGGCCG------TTAGTTTACCTTTACCCTCCCCATTTCCGACCTCCTTTTTTGGGAAA
TCTGCAGGCCATCCACC----CGAGCCCATCCATGGAGGGAGAGGCCGTTGACGCCGAGCTGCGGCTCTGCCCACCGCAC
AGCGGCGGCG------CGTCGGCGGTGGCGGCGGAGAGCAAGTACGTCAAGGTGAGCGTGGAAGGAGCCCGGTACCAGCG
GACGGTGGACCTGAGGGCGTACGGTGGGCACGGGGAGCTCAGGGCGGCGCTCTTGGGCCTGGCCGGCCAGATGCTGGACT
TGGCCGTGGCCTACGAGGACAATGCCGGCGACATCTTGCTCGCCGGCGACCTCCCCTGGGACATGTTCGTCTCCGACTGC
AGGAGTGTCAGGATTATGAGACGGTCGACGACGGTGACAAGCAGCTAG--------------------------------
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>chr2A_1_TraesCS2A01G592700
ACACATGCCGTGGCCGTGCATAATGTATTCATGCGCACATGTGGGCTACGCACCAACTTTCATACAATAATACTCCTTCG
TAAAGAAATACAGTATAAAAAGCATTTAGATCACTATAAAGGGAGTAGTAGTTCTGTGTGTATATGTCGATTTGGCACGA
TGCGACGCGAGAGGAGGCCCATCGTACACCGAGTACGTACATGCATGCATGCGCTCGCTTGCGTGTAGGCCCACGCACGT
TGAGTACGTGCAAAAGAAAATACTAATGATACTGATTCGTTACAACGTGTAAGTGTGATACTTTCATGCAATTAACTCGG
ATTAAGTTCGTGTCGGTGTTTGTTGAGGCGTGAGGGCCACGGAGGAGGAGACAGAGGCAGGCAGGGGAGAAGAGCGTCGT
GAATGAGCTGCCATTTTGGGGTCGACAACCAGATGCGAGCATGACAGCGACTGTCCATTTTCAGCCCACTGCACGGCCCA
GGCGAGCGCACGATGCAGATGCAGATGCTGATGGTGATGATGATCAGGGCACGAACCAACG-----ATGGTGCGAGCACA
CGTACTGACGC----ACGTACACACATGATG----------ATGGACGGAAATTGTTGGTGGCTCCCCTCCCCGCCCCGG
CCCACCTGAATTTCCATTTCATAACGAGGGCCGAAACGCCCGGACGATGCAGCCCGGAT---------------------
------------------------------------------------------GGACCTCTTTTCTCTGCATGCATGTT
CCCAGCCTCCTCCTTCTTCTTCTCC---------ACACATAGCCGTGGTGC--CCAGC--------TGCGGCCGCATGCA
TGCCATTCTCGGCTCAGCAGCCAGATATCGGCA---TGACTGGGCTGCCATTCTCGGCTCAGCAAGCGCATGACGCCGAT
TGTCCATTCTCTGCAGCGACCATGTGAGG--GTGAGGGTGAGGGAGAGGGAGGGCG-----GGAGACGGCCGCGCGCGTT
CCTCCGGCTATAT-------------------------------------------------------------------
---------------------------------------------------------------ATGCAGCAGCTCGCAGC
CCAGATCTCAGGCGGTCTTCATTCCTCCGACCTCGCGCCGGCGACTGCCCTCGATGGAATCGGTGAGCTCCGGCGACGGC
TATCCCCAGCTACGGACGACCGTC-------------------GGCCAGCGCGGGCTCAGTCGGCACGGCGCCGACGACC
CTCGGCTTGGAGCTCGCCCTCGCCCGCGACCCTCCACGGTGTGTTTTCTGCTCCCCTTCCTAAGCAAGAAGAAGGATGCC
ACACACCCGTTCGCCGTAGGCTGGCCG------TTAGTTTACCTTTACCCTCCCCATTTCCGACCTCCTTTTTTGGGAAA
TCTGCAGGCCATCCACC----CGAGCCCATCCATGGAGGGAGAGGCCGTTGACGCCGAGCTGCGGCTCTGCCCACCGCAC
AGCGGCGGCG------CGTCGGCGGTGGCGGCGGAGAGCAAGTACGTCAAGGTGAGCGTGGAAGGAGCCCGGTACCAGCG
GACGGTGGACCTGAGGGCGTACGGTGGGCACGGGGAGCTCAGGGCGGCGCTCTTGGGCCTGGCCGGCCAGATGCTGGACT
TGGCCGTGGCCTACGAGGACAATGCCGGCGACATCTTGCTCGCCGGCGACCTCCCCTGGGACATGTTCGTCTCCGACTGC
AGGAGTGTCAGGATTATGAGACGGTCGACGACGGTGACAAGCAGCTAGAGCTAG----GGCAGCAACACAACATCTCCTT
GTCCTCA------------TTGCCGTTGCTGTTTTCCTTAGATGCGTTTATGCTGGCGAAATTT---CTACATCTTGTTT
GGTGCTGTTGCACGATACTTTGTGGTGAGAAATTTGGATGAAACTTGAATAAAAATTGCGCCATGTTAACTTGTTTGCTC
GGTGATGAGCATTCTTCAGTCTCTTGGGTTATGATTTAATAAACAAACTTTTCTTGTAGAAAAACAAGAAGCTAATTGAC
AAATATATATTCTACCAAAGCCAGAAAAAGTGTAGGCAGTTTGGCAAACTGAACAAAATAGGCGACATATGAAAAAAGAA
AGAAATAGACACCACAAACATTCATTGTACCAACAAGAAGAGCGAGAATCGTTCCACACTTCCAGGAG--ACAGCGCGAC
AAATCAAAAGTTAAATGTGTCAAAACTCTTCAACAAAAAATGGTGTACAATTGTACATGTATCGGATCCACACACGCACA
----------------CACACTCGTCAATCTTGTCACTGCATCGACCAGACATCATACAAGCCCAACAACAAACTACCAT
ACCAAAAAGCAAGCTGATACACAAGCAGAGCGAGAGAGGCTACAGCATTTACAGGCA--------GGCCTTCTGACTTCG
AGGTCGAGACCAAACGAACACCTTCCGA----AGCCAGCCGGTGAAACAATCATGACGCGAGGGACACCGCCCCGTGTTA
TGGCTCAAAGATGATGCTCTGGCGGCTTCTCTTTCCAAATGGCAAGGATGCCAAATCAATAAGGGTTAGTGTTGTACAAA
GGGCATGGATCAGTAGCAACAAAATGTTACTACCACAGGGCGTGACCTGGGG-GCTTCACGGTAGCGCACGAAAACAAGC
AGCGCTCCATCGTGAGACCAGAGGGAAAGAAAGCATCTCCCATTCAACTGTGTGTTTGTATTG----AGAATGTGTGGTC
AGTCTACGACATAATTTCCTGGAAGACAAGACTGAGCTCCTGCGCTGTGTTTGAAGCTGCCC
>chr2D_348
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---------------------------GCGTGAGGGCCACAGAGGAGGAGATAGAGGCAGGCAGGGGAGAAGAGCGTCGT
CAATCGGTTGCCATTTTCGGGTCGGCAACAAGATATGAGCATGATAGCGACTGTCCGTTTTCAGCCCACTGCATGGCCCG
GGCGAGCGCACGATGC------------------TGATGATGATTAGGACACGAGCCAACCAACGAATGGTGCGAGCAAA
CGTACTT-------GACGCACATACATGATG----------ATGGATGGAAATTGTTGGTGGCATG--------------
-------------------CATAACAAGGGCCAAAAC--------------GCCCGGA-GCATGTGTTAGAGCAGTTTGG
GAATGCCTGCCATTTTCAATTTTTCATCCCGGCCCACAGCCC--------GGACGGATCTCTTTTC------------TT
CCCAGTCTCCTTCTCCTTCTTCTTC---------ACGGATAGGAGGGAGCTCGCCAGC--------T------GCATGCA
TGCCATTCTCGGCTCAGCAACCAGATACCGGCATCACGACAGGGCTGCCATTCTCGGCTCAGCAAGCT----------CT
TGCCCATTCCCTGCAGCGAGCATGTGAGGCCGTGAGGGTGAGGTCAGTAGACAGC-------------------CGCGTT
CCTCCGGCTATAT-------------------------------------------------------------------
---------------------------------------------------------------AT----------GCAGC
CCAGATCTCAGGCGGTCTTCATTCCTCCCACCTGGCGCCGGCGACTACCCTCCAT---------------------CGGC
TATCCCCAGCTACGGACGACCGTC-------------------GGC-------------------ACGGCGCCGACGACC
CTCGGCTTGGAGCTCGCCCTCGCCCGCGACCCTCGACGGTATCTGTTCTGCTCACCTTCATAAGCAAGAAGAAGGATGCC
ACC--CCCGTTCGCCGTAGGCTGACCA------TTAGTTTACCTTTACCCTCCCCATTTCCGACCTCTTTTTTCCGGAAA
TCTGCAGGCCATCCACCCGATCGAGCCCATCCATGGAGGGAGAGGCCGTTGATGCCGAGCTGCGGCTCGGCCCGCCGGGC
TGCGGCGGCGGTGCGTCGTCGGCCGGTTGCACCGAGAGCAAGTACGTCAAAGTCAGCGTGGAAGGAGCCCGGTACCAGCG
GAAGGTGGACCTGAGAGCATACGGAGGGCACGCGGAGCTCAGGGCGGCGCTCCTGGGCCTGGCCGGCCACATGCTGGACC
TGGCCGTGGCCTACGAGGACGACGCCGGCGACCTCTTGCTCGCCGGCGACCTCCCCTGGGACATGTTCGTCCCCGACTGC
AGGAGCATCAGGATAATGAGGCGATCGACGACGGTGACAAGCAGCTAGAGCTAGCTAGGGCAGCAACGCAACATCTCCGT
GTCGTT------------GTTGCCGTTGGTGCTTTTCTTAGATGCGTTTATTATGTT---ATTT---CTACGTCTTGTTT
GGTGTTGTTGCACGATA---------------------------------------------------------------
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>chr2A_373
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----------------------------------------------------AGAGGCAGACAGGGGAGAAGAGCGTCGT
GAATGAGCTGCCATTTTCGGGTCGGCAACCAGATACGAGCATGACAGCGACTGTCCGTTTTCAGCCCACTGCATGGCCCA
GGCGAGCGCACGATGC------------------TGATGCTGATGAT-----GAACCAACCAACGAATGGTGCGAGCACA
CGTACGTACTTGACGACGCACATGCATGCATGCATGATGGAATGGATGGAAATTGTTGGTGGCATAAC------------
----------------------------------AAG--------------GCCCGGAGGCATGTGTTAGAGCAGTTTGG
GAATGCCTGCCATTTTCAATTCTTCACCCCGGCCCACAGCTAGCCCGGATGGACGGATCTCTTTTC------------TT
CCCAGTCTCCTCCTTCTCCTTCTCCTTCTTCTTCACGGATAGGAGGGAGCCCGCCAGCTGCATGCAT------GCATGCA
TGCCATTCTCGGCTCAGCAACCGGATACCGGCATGACGACAAGGCTGCCATTCTCGGCTCAGCAAGCT----------CT
TGTCCACTCCCTGCAGCGACCATGTGAGG--GTGAGG------AAGAGGGAGGGCA-----GGAGACGGCCGCGCGCGTT
CCTCCGGCTATAT-------------------------------------------------------------------
---------------------------------------------------------------AT----------GCAGC
CCAGATCTCAGGCGGTCTTCATTCCTCCCACCTGGTGCCGGCGACTGTCCTCGATGGAATCGATGAGCTCCGGCGACGGC
TATCCCCAGCTACGGACGACCGTCCGCCAGAGCTGGCTCAGTCGGC-------------------ACGGCGCCGACGACC
CTCGACTTGGAGCTCGCCCTCGCCCGCGACCCTCCACGGTATGTGTTCTGCTCACCTTCCTGTGCAACAAGAAGGATGCC
ACC--TCCGTTCGCCGTTGGCTGACCATGTCCCTTAGTTTACCTTTACCCTCCCCATCTCCGACCTCGTTTTTTGGGAAA
TCTGCAGGCCATCCACC----CGAGTCCATCCATGGAGGGAGAGGCCGTTGACGCCGAGCTGCGGCTCGGCCCTCCGGAC
AGCGGCGGCG------CGTCGGCGGTGGCGTCGGAGAGCAAGTACGTCAAGGTGAGCGTGGAAGGAGCCCGGTACCAGCG
GACGGTGGACCTGAGGGCGTACGGAGGGCACGCGGAGCTCAGGGCGGCGCTCTTGGGCCTGGCTGGCCAGATGCTGGGCC
TGGGCGTGACCTACGAGGACAATGACGGCGACATCTTGCTCGCCGACGACCTCCCCTGGGACATGTTCGTCTCCGACTGC
AGGAGCATCAGGATTATGAGACGATCGACGATGATGACAAACAGCTAGAGCTAG----GGCACGTTGAACAGTAATGTCA
GTCATGTC------------------------------------------------------------------------
-----------------CTCTGTTGTGAGAAATTTGGATGAAACTTGAATAA----------------------------
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>chr2B_445
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--------------------------------------------CAGCGACTGTCTA--TTCAGCCCACTGCACGGCCCA
GGCGAGCACACG--------------------------------------------------------------------
--TACTGACGTAGT-ACGTACATATATGATG----------ATGGATGGAAATTGTTGGTGGCTCCCCTCCCCTCCCCGG
CCCACCTGAATTTCTATTTCATAACGAGGGCCAAAAC--------------GCCCGGAT---------------------
------------------------------------------------------GGATCTCTTTTCTCTGCATGCATGTT
CCCAGCCTCCTTCTCCTTCTTCTTCTCCACG------CAGAGCCGTGGCGC--CCAGC--------T------GCATGCA
TGCCATTCTCGGCTCAGCAACCAGATATCGC---CATGACTGGGCTGCCATTCTCGGCTCAGCAAGCGCATGACACCGCT
TGTCCATTCTCTGCAGCGAGCATGTGAGG--GTGAGGGTGAGGAAGAGGGAGGGCAGGACAGGAAACGGCCGCGCGCGTT
CCTCCGGTTATATTATACTCCCTCCGTCCGGAAATACTTGTCATCAAAATGGATAAAAGGGGATGTATCTAAACATATTT
TAGTTTTAGATACATCTCTTTTTATCCATTTTGATGACAAGTATTTTCGGACGGAGGGAGTATATGCAGCAGCTCACAGC
CCAGATCTCAGGCGGTATTCATTCCTCCCACCTGGCGCCGGCGACTACCCTCGATGGAATCGGTGAGCTCCGGCGACGGC
TATCCCCAGCTACGGACGACCGTC-------------------GGCCAGCGCCGGCTCCGTCGGCACGGCGCCGAT----
-----------------CCTCGCCCGCGACCCTCGACGGTATGTGTTCTGCTCACCTTCCTAAGCAAGAAGAAGGATGCC
AGC--CCCGTTCGCCGTAGGCTGG-----------------CCATTACTCTCCCCATTTCCGACCTCTTGTTTTGGGAAA
TCTGCAGGCCATCCACC----CGAGCCCATCCATGGAGGGAGAGGCCGTTGACGCCGAGCTGCGGCTCGGCCCTCCGCGC
AGCGGCGGCG------CGTCGGCGG---------AGAGCAAGTACGTCAAGGTGAGCGTGGAAGGAGCCCGGTACCAGCG
GAAGGTGGACCTGATGGCTTACGGAGGGCACGCGGAGCTCAGGGCGGCGCTCCTGGGCTTGGCTGGCCAGATGCTGGACT
TGGTCGTCGCCTACAAGGACGAGGACGGCGACATCTTGCTCGCCGGCGACCTCCCCTGGGACATGTTCGTCCCCGACTGC
AGGAGCATCAGGATTATGAGACGGTCGACGACGGTGACAAGCAGCTAGAGC----------AGCAACGTAACATCTCCGT
GTCGTGTCAGTCTCAGTCGTTGCCGTTGGTGTTTTTCTTAGCTGCGTTTATGTTGGCGAAATTTCTACTACATCTTGCTT
GGTGCTGTTGCACGATA---------------------------------------------------------------
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>chr2B_1979
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---------------------------------------------GAATCGTTCCACACTTCCAGGGGACACAGCGCGAC
AAATAAAAAGTTG-ATGTGTCAAAACTCTTTAACAAAAAATGGTGTACAATTATACATGTATCAGATCCAC---------
---ACACACACACACACTCACTCGTCAATCTTGTCACTGCATCGACCAGACATCATACAAGCCCAACAACAAACTACCAT
ACCAAAAAGCAAGCTGATACACAAGCAGAGCGAGAGAGGCTACAGCATTTACAGGCACGGGCGAAGGCCTTCTGACTTCG
AGGTCGAGACCAAACGAACACCTTCCGAAGCCAGCCAGCCGGTGAAACAATCATGAAGCGAGGGACACCGCCCCGCGCTC
-GGCTCAGGGATGATGCTCTGGCGGCTTCTCTTTCCAAATGGCAAGGATGCCAAATCAATAAGGGTTAGTGTTGTACAAA
GGGCATGGATCAGTAGCAACAAAAGGTTACTACCAC-GGGCGTGACCTCAGGGGCTTCACCGCAGCGCGA-AAACAAAGG
AGCGCTCCATTGTGAGACCAGAGGGAAAGAAAGCATCTCCCGTTCAACTGTGTGTTTGTATTGATTGAGAATGTGTGGTA
AGTCTACGACATAATTTCCTGGAAGACGAGACTGAGCTCCTGCGCTGTGTTTGAAGCTGCCC
>chr2D_1979
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---------------------------------------------GAATCGTTCCACACTTCCAGGAG--ACAGCGCGAC
AAATAAAAAGTTG-ATGTGTCAAAACTCTTCAACAAAAAATGGTGTACAATTGTACATGTATCAGATCCACACACACACA
CACACACACACACACACACACTCGTCAATCTTGTCACTGCATCGACCAGACATCATACAAGCCCAACAACAAACTACCAT
ACCAAAAAGCAAGCTGATACACAAGCAGAGCGAGAGAGGCTACAGCATTTACAGGCACGGGCGAAGGCCTTCTGACTTCA
AGGTCGAGACCAAACGAACACCTTCCGAAGCCGGCCGGTGA---AAACAATCACGACGCAAGGGACATCGCCCCGCGCTC
-GGCTCAAGGATGATGCTCTGGCGGCTTCTCTTACCAAATGGCAAGGATGGCAAATCAATAAGGGTTAGTGTTGTACAAA
GGGCATGGATCAGTAGCAACAAAAGGTTACTACCAC-GGGCGTGACCTCAGG-ACTTCACGGTAGCGCGA-AAACAAGCA
GCG--TCCGTCGTGAGGCCAGAGGGAAAGAAAGCATCTCCCATTCAACTGTGTGTTTGTATTGC----GAATGTGTGGTC
AATCTACGACATGATTTCCTGGAAGACGAGACTGAGCTCCTGTGCTGTGTTTGAAGCTGCCC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S----------S----------------------------
-----------------S------S---------S---------------------------------------------
----------------SSSSSSSSSSSSSSSSSS----------S---S-----------S-------------------
----------S-----------S-----------------------S--------------------------S------
--------------S-----------------S----SSSSSSSSSSSSSS-----------------------------
---------------------------------------------------------S----------------------
------------------------------------S-----------S------------------SSSSSS-------
-------------------S------------------------------------------------------S---S-
-------------------------------------------S-----------S------------------------
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----------------------------S----S----------------------------------------------
----------------------------------------------------S-----S---------------------
----------------------------------------S---S--------S--------------------------
--SSS---------------------S----------------------------------------S------------
--------------------------------------------------------------------S----S------
------------------------------S-------------------------------------------------
------------------------S-------S-----------------------------------------------
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-----SS-----------------------------------------------------------------------S-
---S-SS---------------------S------S----------------S---------------------------
-------------------S---S----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------
----S-------SS-------------------------------------------------S-----------S----
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---------------------------------------------------------------------------S-S-S
S-------S-----------------------------------------------------------------------
------------------------S-----------S-----------SS------------------SSS---SS---S
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---------------------------S----------------------------------
>forward_163
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---------------------------------------------------------------ATGTCGATTTGGCACGA
TGC-----------------------------------------------------------------------------
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>reverse_1631
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------------------------------GCGGAGAGCAAGTACGTCAA------------------------------
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>forward_1414
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----------------------------------CACGGTGTGTTTTCTGCTCC--------------------------
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>reverse_2791
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----------------------------------------------------------------------GAAAACAAGC
AGCGCTCCAT----------------------------------------------------------------------
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