Multiple sequence alignment - TraesCS2A01G589900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G589900 chr2A 100.000 4018 0 0 1 4018 778422181 778426198 0.000000e+00 7420.0
1 TraesCS2A01G589900 chr2B 89.733 2737 198 39 1327 4018 778846831 778849529 0.000000e+00 3421.0
2 TraesCS2A01G589900 chr2B 83.125 320 19 14 1 300 778844983 778845287 3.980000e-65 259.0
3 TraesCS2A01G589900 chr2B 82.317 164 22 4 974 1133 778846481 778846641 7.000000e-28 135.0
4 TraesCS2A01G589900 chr2D 87.790 1638 141 35 891 2516 634878774 634877184 0.000000e+00 1862.0
5 TraesCS2A01G589900 chr2D 93.462 826 40 7 3204 4018 634876332 634875510 0.000000e+00 1214.0
6 TraesCS2A01G589900 chr2D 89.698 563 32 11 2649 3188 634876944 634876385 0.000000e+00 695.0
7 TraesCS2A01G589900 chr2D 80.618 356 16 22 1 337 634879559 634879238 4.040000e-55 226.0
8 TraesCS2A01G589900 chr2D 91.765 85 5 1 2522 2606 634877031 634876949 2.540000e-22 117.0
9 TraesCS2A01G589900 chr2D 89.333 75 6 2 2446 2518 634877132 634877058 4.280000e-15 93.5
10 TraesCS2A01G589900 chr4A 89.610 77 8 0 2256 2332 723509630 723509706 9.190000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G589900 chr2A 778422181 778426198 4017 False 7420.000000 7420 100.000000 1 4018 1 chr2A.!!$F1 4017
1 TraesCS2A01G589900 chr2B 778844983 778849529 4546 False 1271.666667 3421 85.058333 1 4018 3 chr2B.!!$F1 4017
2 TraesCS2A01G589900 chr2D 634875510 634879559 4049 True 701.250000 1862 88.777667 1 4018 6 chr2D.!!$R1 4017

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
856 1635 0.040067 CGCCTGCACTTCCAGTTTTC 60.040 55.0 0.00 0.0 0.0 2.29 F
1924 2789 0.041047 CCATATGCATCGGTGTTGCG 60.041 55.0 0.19 0.0 43.1 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2665 3686 0.176680 ATACAGCTCCCAAGTCTGCG 59.823 55.0 0.0 0.00 32.93 5.18 R
3673 4777 0.107945 GCCAGGTCCTAGTGAAGCTG 60.108 60.0 0.0 8.48 39.98 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 60 8.573035 CAGGAGAAATCTACATAGAGTAACTCC 58.427 40.741 21.63 21.63 44.52 3.85
80 88 3.151022 CACCTCCCTCCCTCGCTC 61.151 72.222 0.00 0.00 0.00 5.03
81 89 4.467107 ACCTCCCTCCCTCGCTCC 62.467 72.222 0.00 0.00 0.00 4.70
83 91 4.150454 CTCCCTCCCTCGCTCCCT 62.150 72.222 0.00 0.00 0.00 4.20
84 92 4.144727 TCCCTCCCTCGCTCCCTC 62.145 72.222 0.00 0.00 0.00 4.30
98 122 4.840005 CCTCGCTTCTTCCCCCGC 62.840 72.222 0.00 0.00 0.00 6.13
131 155 3.311702 ACCTATCCATTTCCTCTCCCTGT 60.312 47.826 0.00 0.00 0.00 4.00
132 156 3.072184 CCTATCCATTTCCTCTCCCTGTG 59.928 52.174 0.00 0.00 0.00 3.66
133 157 1.289160 TCCATTTCCTCTCCCTGTGG 58.711 55.000 0.00 0.00 0.00 4.17
134 158 1.203428 TCCATTTCCTCTCCCTGTGGA 60.203 52.381 0.00 0.00 38.75 4.02
135 159 1.065126 CCATTTCCTCTCCCTGTGGAC 60.065 57.143 0.00 0.00 37.98 4.02
136 160 1.912043 CATTTCCTCTCCCTGTGGACT 59.088 52.381 0.00 0.00 37.98 3.85
137 161 1.352083 TTTCCTCTCCCTGTGGACTG 58.648 55.000 0.00 0.00 37.98 3.51
208 244 1.149627 CCCGGGAAGAACACACCAA 59.850 57.895 18.48 0.00 0.00 3.67
217 253 3.468266 AACACACCAAGCAAGCGCG 62.468 57.895 0.00 0.00 45.49 6.86
286 329 0.731855 GGCCGTTGTCGTCTACAGTC 60.732 60.000 0.00 0.00 39.87 3.51
300 343 1.624336 ACAGTCGCCTACCTTGTACA 58.376 50.000 0.00 0.00 0.00 2.90
318 361 8.946085 CCTTGTACAACTAATTCTTTATCAGCA 58.054 33.333 3.59 0.00 0.00 4.41
337 380 7.058023 TCAGCAACTCCTTACTTTGTAGTTA 57.942 36.000 0.00 0.00 35.78 2.24
338 381 6.927381 TCAGCAACTCCTTACTTTGTAGTTAC 59.073 38.462 0.00 0.00 35.78 2.50
339 382 6.929606 CAGCAACTCCTTACTTTGTAGTTACT 59.070 38.462 0.00 0.00 35.78 2.24
340 383 8.086522 CAGCAACTCCTTACTTTGTAGTTACTA 58.913 37.037 0.00 0.00 35.78 1.82
341 384 8.087136 AGCAACTCCTTACTTTGTAGTTACTAC 58.913 37.037 14.99 14.99 37.46 2.73
342 385 8.087136 GCAACTCCTTACTTTGTAGTTACTACT 58.913 37.037 21.20 5.79 37.78 2.57
343 386 9.623350 CAACTCCTTACTTTGTAGTTACTACTC 57.377 37.037 21.20 0.00 37.78 2.59
344 387 8.347004 ACTCCTTACTTTGTAGTTACTACTCC 57.653 38.462 21.20 0.00 37.78 3.85
345 388 8.169393 ACTCCTTACTTTGTAGTTACTACTCCT 58.831 37.037 21.20 6.09 37.78 3.69
346 389 9.678260 CTCCTTACTTTGTAGTTACTACTCCTA 57.322 37.037 21.20 0.52 37.78 2.94
379 445 1.597742 TGCCAACTTCTCAAGTGCTC 58.402 50.000 0.00 0.00 41.91 4.26
382 448 2.999355 GCCAACTTCTCAAGTGCTCTAG 59.001 50.000 0.00 0.00 41.91 2.43
383 449 3.556004 GCCAACTTCTCAAGTGCTCTAGT 60.556 47.826 0.00 0.00 41.91 2.57
384 450 4.322049 GCCAACTTCTCAAGTGCTCTAGTA 60.322 45.833 0.00 0.00 41.91 1.82
387 453 6.975772 CCAACTTCTCAAGTGCTCTAGTATAC 59.024 42.308 0.00 0.00 41.91 1.47
395 461 5.776173 AGTGCTCTAGTATACATGTGTCC 57.224 43.478 9.11 0.00 0.00 4.02
397 463 5.533154 AGTGCTCTAGTATACATGTGTCCTC 59.467 44.000 9.11 0.00 0.00 3.71
406 472 1.079819 ATGTGTCCTCGACAAGCCG 60.080 57.895 0.00 0.00 44.49 5.52
410 476 4.373116 TCCTCGACAAGCCGCCAC 62.373 66.667 0.00 0.00 0.00 5.01
426 501 1.439353 CCACCCGATCCATTTCTGCG 61.439 60.000 0.00 0.00 0.00 5.18
429 504 2.628106 CGATCCATTTCTGCGCCG 59.372 61.111 4.18 0.00 0.00 6.46
430 505 2.329339 GATCCATTTCTGCGCCGC 59.671 61.111 4.18 0.00 0.00 6.53
431 506 3.512287 GATCCATTTCTGCGCCGCG 62.512 63.158 8.83 8.83 0.00 6.46
447 529 3.869272 CGCCTTCTCATGCCGCAC 61.869 66.667 0.00 0.00 0.00 5.34
452 534 1.293924 CTTCTCATGCCGCACCTTAG 58.706 55.000 0.00 0.00 0.00 2.18
459 541 1.040893 TGCCGCACCTTAGCTAGCTA 61.041 55.000 20.67 20.67 33.99 3.32
479 561 6.011476 GCTAGCCGCTAATACTTACTTACT 57.989 41.667 2.29 0.00 35.14 2.24
480 562 6.445475 GCTAGCCGCTAATACTTACTTACTT 58.555 40.000 2.29 0.00 35.14 2.24
481 563 6.922407 GCTAGCCGCTAATACTTACTTACTTT 59.078 38.462 2.29 0.00 35.14 2.66
482 564 7.437565 GCTAGCCGCTAATACTTACTTACTTTT 59.562 37.037 2.29 0.00 35.14 2.27
483 565 9.310716 CTAGCCGCTAATACTTACTTACTTTTT 57.689 33.333 0.90 0.00 0.00 1.94
503 585 1.808411 TTGTGGCACTTCTTCCGATC 58.192 50.000 19.83 0.00 0.00 3.69
538 622 1.288127 CTGCAACCTGGAGCAAAGC 59.712 57.895 16.62 5.33 40.73 3.51
542 626 1.613836 CAACCTGGAGCAAAGCTTCT 58.386 50.000 0.00 0.00 39.88 2.85
543 627 1.959282 CAACCTGGAGCAAAGCTTCTT 59.041 47.619 0.00 0.00 39.88 2.52
544 628 1.613836 ACCTGGAGCAAAGCTTCTTG 58.386 50.000 0.00 0.00 39.88 3.02
554 638 1.843992 AAGCTTCTTGCGCTTTTGTG 58.156 45.000 9.73 0.00 44.76 3.33
555 639 1.134946 AAGCTTCTTGCGCTTTTGTGT 59.865 42.857 9.73 0.00 44.76 3.72
556 640 1.123655 GCTTCTTGCGCTTTTGTGTC 58.876 50.000 9.73 0.00 0.00 3.67
557 641 1.268743 GCTTCTTGCGCTTTTGTGTCT 60.269 47.619 9.73 0.00 0.00 3.41
558 642 2.796032 GCTTCTTGCGCTTTTGTGTCTT 60.796 45.455 9.73 0.00 0.00 3.01
559 643 3.438360 CTTCTTGCGCTTTTGTGTCTTT 58.562 40.909 9.73 0.00 0.00 2.52
560 644 3.502191 TCTTGCGCTTTTGTGTCTTTT 57.498 38.095 9.73 0.00 0.00 2.27
561 645 3.434637 TCTTGCGCTTTTGTGTCTTTTC 58.565 40.909 9.73 0.00 0.00 2.29
562 646 3.128589 TCTTGCGCTTTTGTGTCTTTTCT 59.871 39.130 9.73 0.00 0.00 2.52
563 647 3.065019 TGCGCTTTTGTGTCTTTTCTC 57.935 42.857 9.73 0.00 0.00 2.87
564 648 2.421775 TGCGCTTTTGTGTCTTTTCTCA 59.578 40.909 9.73 0.00 0.00 3.27
565 649 2.783832 GCGCTTTTGTGTCTTTTCTCAC 59.216 45.455 0.00 0.00 35.43 3.51
566 650 3.363178 CGCTTTTGTGTCTTTTCTCACC 58.637 45.455 0.00 0.00 34.14 4.02
567 651 3.706698 GCTTTTGTGTCTTTTCTCACCC 58.293 45.455 0.00 0.00 34.14 4.61
568 652 3.792124 GCTTTTGTGTCTTTTCTCACCCG 60.792 47.826 0.00 0.00 34.14 5.28
569 653 1.961793 TTGTGTCTTTTCTCACCCGG 58.038 50.000 0.00 0.00 34.14 5.73
570 654 0.534203 TGTGTCTTTTCTCACCCGGC 60.534 55.000 0.00 0.00 34.14 6.13
571 655 0.534203 GTGTCTTTTCTCACCCGGCA 60.534 55.000 0.00 0.00 0.00 5.69
572 656 0.250295 TGTCTTTTCTCACCCGGCAG 60.250 55.000 0.00 0.00 0.00 4.85
573 657 0.955919 GTCTTTTCTCACCCGGCAGG 60.956 60.000 0.00 0.00 43.78 4.85
585 669 4.643387 GGCAGGTGCTTCCACGGT 62.643 66.667 1.26 0.00 43.00 4.83
586 670 2.345991 GCAGGTGCTTCCACGGTA 59.654 61.111 0.00 0.00 43.00 4.02
587 671 1.741770 GCAGGTGCTTCCACGGTAG 60.742 63.158 0.00 0.00 43.00 3.18
588 672 1.972198 CAGGTGCTTCCACGGTAGA 59.028 57.895 0.00 0.00 43.00 2.59
589 673 0.537188 CAGGTGCTTCCACGGTAGAT 59.463 55.000 0.00 0.00 43.00 1.98
590 674 1.066143 CAGGTGCTTCCACGGTAGATT 60.066 52.381 0.00 0.00 43.00 2.40
591 675 1.628846 AGGTGCTTCCACGGTAGATTT 59.371 47.619 0.00 0.00 43.00 2.17
592 676 1.737793 GGTGCTTCCACGGTAGATTTG 59.262 52.381 0.00 0.00 43.00 2.32
593 677 2.614481 GGTGCTTCCACGGTAGATTTGA 60.614 50.000 0.00 0.00 43.00 2.69
594 678 2.673368 GTGCTTCCACGGTAGATTTGAG 59.327 50.000 0.00 0.00 31.34 3.02
595 679 2.280628 GCTTCCACGGTAGATTTGAGG 58.719 52.381 0.00 0.00 0.00 3.86
596 680 2.280628 CTTCCACGGTAGATTTGAGGC 58.719 52.381 0.00 0.00 0.00 4.70
597 681 1.568504 TCCACGGTAGATTTGAGGCT 58.431 50.000 0.00 0.00 0.00 4.58
598 682 2.742348 TCCACGGTAGATTTGAGGCTA 58.258 47.619 0.00 0.00 0.00 3.93
599 683 3.101437 TCCACGGTAGATTTGAGGCTAA 58.899 45.455 0.00 0.00 0.00 3.09
605 690 4.024556 CGGTAGATTTGAGGCTAATTGCAG 60.025 45.833 0.00 0.00 45.15 4.41
646 743 2.737252 GTGAGGTGTCGATTTGAGGTTC 59.263 50.000 0.00 0.00 0.00 3.62
650 747 4.003648 AGGTGTCGATTTGAGGTTCATTC 58.996 43.478 0.00 0.00 0.00 2.67
651 748 4.003648 GGTGTCGATTTGAGGTTCATTCT 58.996 43.478 0.00 0.00 0.00 2.40
652 749 4.093556 GGTGTCGATTTGAGGTTCATTCTC 59.906 45.833 0.00 0.00 0.00 2.87
653 750 4.690748 GTGTCGATTTGAGGTTCATTCTCA 59.309 41.667 0.00 0.00 39.24 3.27
654 751 5.352569 GTGTCGATTTGAGGTTCATTCTCAT 59.647 40.000 0.00 0.00 40.46 2.90
655 752 5.352293 TGTCGATTTGAGGTTCATTCTCATG 59.648 40.000 0.00 0.00 40.46 3.07
665 762 1.422781 TCATTCTCATGCCCATCCCTC 59.577 52.381 0.00 0.00 0.00 4.30
666 763 0.776176 ATTCTCATGCCCATCCCTCC 59.224 55.000 0.00 0.00 0.00 4.30
669 766 2.780040 CATGCCCATCCCTCCCCT 60.780 66.667 0.00 0.00 0.00 4.79
670 767 2.451294 ATGCCCATCCCTCCCCTC 60.451 66.667 0.00 0.00 0.00 4.30
671 768 4.843331 TGCCCATCCCTCCCCTCC 62.843 72.222 0.00 0.00 0.00 4.30
672 769 4.523282 GCCCATCCCTCCCCTCCT 62.523 72.222 0.00 0.00 0.00 3.69
673 770 2.449322 CCCATCCCTCCCCTCCTG 60.449 72.222 0.00 0.00 0.00 3.86
674 771 2.705410 CCATCCCTCCCCTCCTGA 59.295 66.667 0.00 0.00 0.00 3.86
676 773 0.402566 CCATCCCTCCCCTCCTGATT 60.403 60.000 0.00 0.00 0.00 2.57
677 774 1.527457 CATCCCTCCCCTCCTGATTT 58.473 55.000 0.00 0.00 0.00 2.17
678 775 1.144503 CATCCCTCCCCTCCTGATTTG 59.855 57.143 0.00 0.00 0.00 2.32
679 776 0.421495 TCCCTCCCCTCCTGATTTGA 59.579 55.000 0.00 0.00 0.00 2.69
680 777 0.842635 CCCTCCCCTCCTGATTTGAG 59.157 60.000 0.00 0.00 0.00 3.02
689 1221 2.943690 CTCCTGATTTGAGGCTGTCATG 59.056 50.000 0.00 0.00 34.17 3.07
691 1223 3.009363 TCCTGATTTGAGGCTGTCATGAA 59.991 43.478 0.00 0.00 34.17 2.57
694 1226 5.105473 CCTGATTTGAGGCTGTCATGAATTT 60.105 40.000 0.00 0.00 34.17 1.82
695 1227 6.095860 CCTGATTTGAGGCTGTCATGAATTTA 59.904 38.462 0.00 0.00 34.17 1.40
698 1230 4.970662 TGAGGCTGTCATGAATTTAAGC 57.029 40.909 0.00 2.08 0.00 3.09
719 1445 1.528129 CAACTTGGCCTCTCCTGAAC 58.472 55.000 3.32 0.00 35.26 3.18
725 1455 1.072331 TGGCCTCTCCTGAACTTTCAC 59.928 52.381 3.32 0.00 35.26 3.18
728 1458 3.070748 GCCTCTCCTGAACTTTCACTTC 58.929 50.000 0.00 0.00 32.90 3.01
764 1543 1.606224 CCAATTTGGCCTCTGTTGCAC 60.606 52.381 3.32 0.00 0.00 4.57
768 1547 1.484038 TTGGCCTCTGTTGCACTTTT 58.516 45.000 3.32 0.00 0.00 2.27
769 1548 1.032014 TGGCCTCTGTTGCACTTTTC 58.968 50.000 3.32 0.00 0.00 2.29
770 1549 1.032014 GGCCTCTGTTGCACTTTTCA 58.968 50.000 0.00 0.00 0.00 2.69
771 1550 1.000938 GGCCTCTGTTGCACTTTTCAG 60.001 52.381 0.00 0.00 0.00 3.02
774 1553 3.429410 GCCTCTGTTGCACTTTTCAGTTT 60.429 43.478 0.00 0.00 0.00 2.66
778 1557 7.648142 CCTCTGTTGCACTTTTCAGTTTTATA 58.352 34.615 0.00 0.00 0.00 0.98
780 1559 9.683069 CTCTGTTGCACTTTTCAGTTTTATAAT 57.317 29.630 0.00 0.00 0.00 1.28
833 1612 7.995463 TTTTAAGAAATTCGTTCCAACTTGG 57.005 32.000 0.74 0.74 36.86 3.61
834 1613 3.643159 AGAAATTCGTTCCAACTTGGC 57.357 42.857 2.52 0.00 37.47 4.52
835 1614 2.296190 AGAAATTCGTTCCAACTTGGCC 59.704 45.455 2.52 0.00 37.47 5.36
836 1615 1.995376 AATTCGTTCCAACTTGGCCT 58.005 45.000 3.32 0.00 37.47 5.19
837 1616 1.534729 ATTCGTTCCAACTTGGCCTC 58.465 50.000 3.32 0.00 37.47 4.70
838 1617 0.882927 TTCGTTCCAACTTGGCCTCG 60.883 55.000 3.32 7.64 37.47 4.63
839 1618 2.954611 GTTCCAACTTGGCCTCGC 59.045 61.111 3.32 0.00 37.47 5.03
850 1629 4.704833 GCCTCGCCTGCACTTCCA 62.705 66.667 0.00 0.00 0.00 3.53
851 1630 2.435586 CCTCGCCTGCACTTCCAG 60.436 66.667 0.00 0.00 0.00 3.86
852 1631 2.345244 CTCGCCTGCACTTCCAGT 59.655 61.111 0.00 0.00 0.00 4.00
853 1632 1.302033 CTCGCCTGCACTTCCAGTT 60.302 57.895 0.00 0.00 0.00 3.16
854 1633 0.886490 CTCGCCTGCACTTCCAGTTT 60.886 55.000 0.00 0.00 0.00 2.66
855 1634 0.465460 TCGCCTGCACTTCCAGTTTT 60.465 50.000 0.00 0.00 0.00 2.43
856 1635 0.040067 CGCCTGCACTTCCAGTTTTC 60.040 55.000 0.00 0.00 0.00 2.29
857 1636 1.032014 GCCTGCACTTCCAGTTTTCA 58.968 50.000 0.00 0.00 0.00 2.69
858 1637 1.615392 GCCTGCACTTCCAGTTTTCAT 59.385 47.619 0.00 0.00 0.00 2.57
859 1638 2.819608 GCCTGCACTTCCAGTTTTCATA 59.180 45.455 0.00 0.00 0.00 2.15
860 1639 3.255642 GCCTGCACTTCCAGTTTTCATAA 59.744 43.478 0.00 0.00 0.00 1.90
861 1640 4.261994 GCCTGCACTTCCAGTTTTCATAAA 60.262 41.667 0.00 0.00 0.00 1.40
862 1641 5.738783 GCCTGCACTTCCAGTTTTCATAAAA 60.739 40.000 0.00 0.00 0.00 1.52
867 1646 7.437862 TGCACTTCCAGTTTTCATAAAATTGTC 59.562 33.333 6.81 0.00 36.65 3.18
883 1662 5.618056 AATTGTCATACTTGAGCTGTGTG 57.382 39.130 0.00 0.00 30.85 3.82
887 1666 4.335400 TCATACTTGAGCTGTGTGACAA 57.665 40.909 0.00 0.00 32.16 3.18
894 1695 2.423185 TGAGCTGTGTGACAAGGTTTTG 59.577 45.455 0.00 0.00 40.24 2.44
919 1720 4.277672 CCCCTGAAATATGTTCATGCAGAG 59.722 45.833 0.00 0.00 0.00 3.35
927 1728 2.610433 TGTTCATGCAGAGTAAGAGCG 58.390 47.619 0.00 0.00 0.00 5.03
928 1729 1.325943 GTTCATGCAGAGTAAGAGCGC 59.674 52.381 0.00 0.00 0.00 5.92
929 1730 0.179100 TCATGCAGAGTAAGAGCGCC 60.179 55.000 2.29 0.00 0.00 6.53
930 1731 1.227089 ATGCAGAGTAAGAGCGCCG 60.227 57.895 2.29 0.00 0.00 6.46
931 1732 3.258290 GCAGAGTAAGAGCGCCGC 61.258 66.667 2.29 0.00 0.00 6.53
932 1733 2.951745 CAGAGTAAGAGCGCCGCG 60.952 66.667 8.83 8.83 0.00 6.46
954 1755 1.135575 CGCCTTTGCTGAATGTTCCTC 60.136 52.381 0.00 0.00 34.43 3.71
955 1756 1.135575 GCCTTTGCTGAATGTTCCTCG 60.136 52.381 0.00 0.00 33.53 4.63
968 1769 1.531578 GTTCCTCGGAGTTTGACAAGC 59.468 52.381 4.02 0.00 0.00 4.01
974 1775 0.538287 GGAGTTTGACAAGCCTGCCT 60.538 55.000 0.00 0.00 0.00 4.75
975 1776 0.595095 GAGTTTGACAAGCCTGCCTG 59.405 55.000 0.00 0.00 0.00 4.85
977 1778 2.202395 TTTGACAAGCCTGCCTGCC 61.202 57.895 0.00 0.00 0.00 4.85
986 1787 4.862447 CTGCCTGCCGCCATAGCA 62.862 66.667 0.00 0.00 39.83 3.49
987 1788 4.423112 TGCCTGCCGCCATAGCAA 62.423 61.111 0.00 0.00 40.35 3.91
988 1789 3.892581 GCCTGCCGCCATAGCAAC 61.893 66.667 0.00 0.00 40.35 4.17
989 1790 2.124570 CCTGCCGCCATAGCAACT 60.125 61.111 0.00 0.00 40.35 3.16
991 1792 1.450134 CTGCCGCCATAGCAACTGA 60.450 57.895 0.00 0.00 40.35 3.41
992 1793 1.434622 CTGCCGCCATAGCAACTGAG 61.435 60.000 0.00 0.00 40.35 3.35
993 1794 1.450312 GCCGCCATAGCAACTGAGT 60.450 57.895 0.00 0.00 39.83 3.41
994 1795 0.179084 GCCGCCATAGCAACTGAGTA 60.179 55.000 0.00 0.00 39.83 2.59
995 1796 1.541233 GCCGCCATAGCAACTGAGTAT 60.541 52.381 0.00 0.00 39.83 2.12
996 1797 2.288825 GCCGCCATAGCAACTGAGTATA 60.289 50.000 0.00 0.00 39.83 1.47
1035 1836 2.157738 CTCCCAAGAGCCAAGAAACAG 58.842 52.381 0.00 0.00 32.13 3.16
1036 1837 0.600057 CCCAAGAGCCAAGAAACAGC 59.400 55.000 0.00 0.00 0.00 4.40
1037 1838 1.321474 CCAAGAGCCAAGAAACAGCA 58.679 50.000 0.00 0.00 0.00 4.41
1044 1851 1.000938 GCCAAGAAACAGCAACAGGAG 60.001 52.381 0.00 0.00 0.00 3.69
1047 1854 3.004106 CCAAGAAACAGCAACAGGAGAAG 59.996 47.826 0.00 0.00 0.00 2.85
1080 1887 3.389329 TCCATAGGCAACAGGAGAATCTC 59.611 47.826 0.71 0.71 41.41 2.75
1081 1888 3.135348 CCATAGGCAACAGGAGAATCTCA 59.865 47.826 12.79 0.00 41.41 3.27
1084 1891 2.641815 AGGCAACAGGAGAATCTCAACT 59.358 45.455 12.79 0.00 41.41 3.16
1086 1893 3.307339 GGCAACAGGAGAATCTCAACTCT 60.307 47.826 12.79 0.00 34.11 3.24
1091 1898 5.546526 ACAGGAGAATCTCAACTCTCAAAC 58.453 41.667 12.79 0.00 39.95 2.93
1119 1926 0.728129 GCGGTAAGGCTTCGTTTTGC 60.728 55.000 1.30 0.00 0.00 3.68
1136 1943 2.890808 TGCGTTGCAAAATTTACCCA 57.109 40.000 0.00 0.00 34.76 4.51
1141 1948 3.059935 CGTTGCAAAATTTACCCAACAGC 60.060 43.478 19.61 0.00 36.48 4.40
1142 1949 3.118905 TGCAAAATTTACCCAACAGCC 57.881 42.857 0.00 0.00 0.00 4.85
1144 1951 3.066380 GCAAAATTTACCCAACAGCCTG 58.934 45.455 0.00 0.00 0.00 4.85
1145 1952 3.066380 CAAAATTTACCCAACAGCCTGC 58.934 45.455 0.00 0.00 0.00 4.85
1147 1954 2.008242 ATTTACCCAACAGCCTGCAA 57.992 45.000 0.00 0.00 0.00 4.08
1148 1955 2.008242 TTTACCCAACAGCCTGCAAT 57.992 45.000 0.00 0.00 0.00 3.56
1177 1987 5.754782 TGTTATGACCTGTGATGCCTTAAT 58.245 37.500 0.00 0.00 0.00 1.40
1179 1989 3.003394 TGACCTGTGATGCCTTAATGG 57.997 47.619 0.00 0.00 39.35 3.16
1188 2003 6.057533 TGTGATGCCTTAATGGAGTATTCTG 58.942 40.000 0.00 0.00 38.35 3.02
1195 2010 5.471456 CCTTAATGGAGTATTCTGCCATCAC 59.529 44.000 0.00 0.00 41.36 3.06
1198 2013 4.142609 TGGAGTATTCTGCCATCACTTC 57.857 45.455 0.00 0.00 0.00 3.01
1211 2030 2.341846 TCACTTCTTGTTCCCACCAC 57.658 50.000 0.00 0.00 0.00 4.16
1214 2033 3.456644 TCACTTCTTGTTCCCACCACTTA 59.543 43.478 0.00 0.00 0.00 2.24
1215 2034 4.104102 TCACTTCTTGTTCCCACCACTTAT 59.896 41.667 0.00 0.00 0.00 1.73
1222 2041 3.023832 GTTCCCACCACTTATCCCAATG 58.976 50.000 0.00 0.00 0.00 2.82
1225 2044 3.531397 TCCCACCACTTATCCCAATGAAT 59.469 43.478 0.00 0.00 0.00 2.57
1227 2046 5.375354 TCCCACCACTTATCCCAATGAATAT 59.625 40.000 0.00 0.00 0.00 1.28
1228 2047 6.564539 TCCCACCACTTATCCCAATGAATATA 59.435 38.462 0.00 0.00 0.00 0.86
1263 2109 5.607119 TGCCGAAACTAAAAGTTCATCTC 57.393 39.130 0.00 0.00 37.47 2.75
1264 2110 5.305585 TGCCGAAACTAAAAGTTCATCTCT 58.694 37.500 0.00 0.00 37.47 3.10
1265 2111 5.179368 TGCCGAAACTAAAAGTTCATCTCTG 59.821 40.000 0.00 0.00 37.47 3.35
1266 2112 5.179555 GCCGAAACTAAAAGTTCATCTCTGT 59.820 40.000 0.00 0.00 37.47 3.41
1273 2119 2.758736 AGTTCATCTCTGTCTGCACC 57.241 50.000 0.00 0.00 0.00 5.01
1278 2124 2.497675 TCATCTCTGTCTGCACCTTACC 59.502 50.000 0.00 0.00 0.00 2.85
1281 2127 3.090037 TCTCTGTCTGCACCTTACCTAC 58.910 50.000 0.00 0.00 0.00 3.18
1288 2134 1.837439 TGCACCTTACCTACCATCCTG 59.163 52.381 0.00 0.00 0.00 3.86
1292 2138 3.775316 CACCTTACCTACCATCCTGAACT 59.225 47.826 0.00 0.00 0.00 3.01
1309 2155 8.073467 TCCTGAACTAAATTTTGGACAAAAGT 57.927 30.769 14.59 9.98 42.72 2.66
1325 2171 8.626526 TGGACAAAAGTTAACTAAACATCCTTC 58.373 33.333 8.92 0.00 40.83 3.46
1352 2214 1.624336 TGCTGCTTTCAGGCATTTCT 58.376 45.000 0.00 0.00 41.63 2.52
1396 2258 6.715280 TCTTCTCCTATGCTCAGTTGAAATT 58.285 36.000 0.00 0.00 0.00 1.82
1404 2266 3.888323 TGCTCAGTTGAAATTAGCAACCA 59.112 39.130 16.22 7.94 45.05 3.67
1609 2472 1.433534 CGGTCAAAGTTCTCTCTGCC 58.566 55.000 0.00 0.00 0.00 4.85
1687 2550 3.219281 GAAGCACCCTAACCTTGTTGAA 58.781 45.455 0.00 0.00 0.00 2.69
1714 2577 0.859232 GCTGTTGCGTCGAAGAAGAA 59.141 50.000 1.37 0.00 38.59 2.52
1717 2580 3.607078 GCTGTTGCGTCGAAGAAGAAAAT 60.607 43.478 1.37 0.00 34.81 1.82
1741 2604 4.201812 CGCATTTTGGTGTATGAGTACCTG 60.202 45.833 0.00 0.00 37.84 4.00
1756 2619 1.078567 CCTGGAGAACAGCAGCCTC 60.079 63.158 0.00 0.00 46.14 4.70
1768 2631 4.057428 AGCCTCGACCGTGCACTC 62.057 66.667 16.19 5.60 0.00 3.51
1780 2643 2.422597 CGTGCACTCTTGGGTATGAAA 58.577 47.619 16.19 0.00 0.00 2.69
1781 2644 2.811431 CGTGCACTCTTGGGTATGAAAA 59.189 45.455 16.19 0.00 0.00 2.29
1782 2645 3.252215 CGTGCACTCTTGGGTATGAAAAA 59.748 43.478 16.19 0.00 0.00 1.94
1831 2694 4.605640 AACATGGTGATTTCCTTTGTGG 57.394 40.909 0.00 0.00 37.10 4.17
1839 2704 5.222631 GTGATTTCCTTTGTGGCTTAACAG 58.777 41.667 0.00 0.00 35.26 3.16
1851 2716 3.886505 TGGCTTAACAGTTTACCTTGTGG 59.113 43.478 0.00 0.00 39.83 4.17
1856 2721 3.655615 ACAGTTTACCTTGTGGTTCCA 57.344 42.857 0.00 0.00 46.05 3.53
1860 2725 1.975660 TTACCTTGTGGTTCCACAGC 58.024 50.000 21.36 0.00 46.05 4.40
1861 2726 1.136828 TACCTTGTGGTTCCACAGCT 58.863 50.000 21.36 12.10 46.05 4.24
1870 2735 2.438021 TGGTTCCACAGCTTCTAACAGT 59.562 45.455 0.00 0.00 0.00 3.55
1876 2741 2.926200 CACAGCTTCTAACAGTGATCCG 59.074 50.000 0.00 0.00 32.14 4.18
1879 2744 1.941325 CTTCTAACAGTGATCCGGCC 58.059 55.000 0.00 0.00 0.00 6.13
1888 2753 3.016736 CAGTGATCCGGCCAATTTTACT 58.983 45.455 2.24 0.00 0.00 2.24
1924 2789 0.041047 CCATATGCATCGGTGTTGCG 60.041 55.000 0.19 0.00 43.10 4.85
1927 2792 0.809636 TATGCATCGGTGTTGCGAGG 60.810 55.000 0.19 0.00 43.10 4.63
2059 2924 2.241176 TCTGGCCAAACTATTTCCGGAT 59.759 45.455 7.01 0.00 0.00 4.18
2095 2960 0.100146 GTACCCGAGTAGCTGGAACG 59.900 60.000 0.00 0.00 0.00 3.95
2116 2981 1.796459 ACGTGAGTACATTGCGGTTTC 59.204 47.619 0.00 0.00 46.88 2.78
2211 3076 8.429641 GGTTTCATCTATCCCATTGTCTACTTA 58.570 37.037 0.00 0.00 0.00 2.24
2226 3091 7.179076 TGTCTACTTACTCCCTGTTTATTCC 57.821 40.000 0.00 0.00 0.00 3.01
2323 3188 5.470098 TGGTCAATTGACTAAGAAAGCAGAC 59.530 40.000 31.81 14.82 44.20 3.51
2439 3304 6.578023 AGGTCAGTTCTTGCTTACTATCATC 58.422 40.000 0.00 0.00 0.00 2.92
2511 3503 8.659925 CTGTAATACAGCTTCAGAAATCAGAT 57.340 34.615 7.55 0.00 39.62 2.90
2518 3533 6.072618 ACAGCTTCAGAAATCAGATCAACAAG 60.073 38.462 0.00 0.00 0.00 3.16
2520 3535 6.149142 AGCTTCAGAAATCAGATCAACAAGAC 59.851 38.462 0.00 0.00 0.00 3.01
2525 3540 5.936956 AGAAATCAGATCAACAAGACTGTCC 59.063 40.000 3.76 0.00 33.45 4.02
2575 3592 4.333649 GTGATGAACTTAGCTTGCAGCATA 59.666 41.667 0.00 0.00 45.56 3.14
2577 3594 6.203530 GTGATGAACTTAGCTTGCAGCATATA 59.796 38.462 0.00 0.00 45.56 0.86
2596 3613 7.038017 AGCATATACCTGACTTTATGCCAGTAT 60.038 37.037 9.46 0.00 45.05 2.12
2597 3614 7.607991 GCATATACCTGACTTTATGCCAGTATT 59.392 37.037 3.04 0.00 40.51 1.89
2615 3632 7.221452 GCCAGTATTAAAAGATTCACAAGCATG 59.779 37.037 0.00 0.00 0.00 4.06
2636 3653 7.668469 AGCATGAAATGATTTATATCAGCCTCA 59.332 33.333 0.00 5.03 42.55 3.86
2639 3656 8.613060 TGAAATGATTTATATCAGCCTCAGTC 57.387 34.615 2.30 0.00 43.70 3.51
2640 3657 8.435187 TGAAATGATTTATATCAGCCTCAGTCT 58.565 33.333 2.30 0.00 43.70 3.24
2641 3658 9.935241 GAAATGATTTATATCAGCCTCAGTCTA 57.065 33.333 2.30 0.00 43.70 2.59
2644 3661 9.717942 ATGATTTATATCAGCCTCAGTCTAAAC 57.282 33.333 2.30 0.00 43.70 2.01
2647 3664 8.540507 TTTATATCAGCCTCAGTCTAAACTCT 57.459 34.615 0.00 0.00 31.71 3.24
2651 3668 6.665992 TCAGCCTCAGTCTAAACTCTTAAA 57.334 37.500 0.00 0.00 31.71 1.52
2662 3683 9.274206 AGTCTAAACTCTTAAACCTGAACATTC 57.726 33.333 0.00 0.00 0.00 2.67
2665 3686 6.635030 AACTCTTAAACCTGAACATTCACC 57.365 37.500 0.00 0.00 32.90 4.02
2666 3687 4.755123 ACTCTTAAACCTGAACATTCACCG 59.245 41.667 0.00 0.00 32.90 4.94
2780 3801 2.360475 GTGGCCCTCTTCTGCACC 60.360 66.667 0.00 0.00 0.00 5.01
2813 3834 4.585526 CGCCGCCCTTCGATGCTA 62.586 66.667 0.00 0.00 41.67 3.49
2829 3850 1.977854 TGCTACAGGTGGTGAAGATGT 59.022 47.619 0.00 0.00 0.00 3.06
2855 3876 0.469917 AGCCAATCCGGATCAACGAT 59.530 50.000 19.43 0.00 36.56 3.73
2867 3888 3.316588 GGATCAACGATAGAGAGCTGACA 59.683 47.826 0.00 0.00 41.38 3.58
2912 3933 1.264749 ATAGCGGTGTCTCCAAGGCA 61.265 55.000 0.00 0.00 35.57 4.75
2951 3972 1.760613 AGGTTCAAGAACTCGACCACA 59.239 47.619 12.22 0.00 40.94 4.17
3057 4079 2.562738 GTGGCCTGCTTTGTTCCTTTAT 59.437 45.455 3.32 0.00 0.00 1.40
3065 4087 6.936335 CCTGCTTTGTTCCTTTATTTCCATTT 59.064 34.615 0.00 0.00 0.00 2.32
3122 4165 3.817084 TCTGCTCATGAGTTTTGTCTTGG 59.183 43.478 23.38 0.00 0.00 3.61
3124 4167 3.316029 TGCTCATGAGTTTTGTCTTGGTG 59.684 43.478 23.38 0.00 0.00 4.17
3126 4169 4.320057 GCTCATGAGTTTTGTCTTGGTGAG 60.320 45.833 23.38 0.00 35.04 3.51
3129 4172 2.297701 GAGTTTTGTCTTGGTGAGGCA 58.702 47.619 0.00 0.00 38.47 4.75
3197 4248 8.398491 CAATGTAAAATTGCTGGAAGTATGAC 57.602 34.615 0.00 0.00 35.30 3.06
3216 4304 1.202417 ACGGTAGAATCAGGCATGTCG 60.202 52.381 0.00 0.00 0.00 4.35
3277 4373 7.461749 ACCATAATGTATTTATCCAGTCTGGG 58.538 38.462 19.11 0.53 38.32 4.45
3294 4390 2.637872 CTGGGACCAGGAGAAAACAGTA 59.362 50.000 10.55 0.00 40.17 2.74
3415 4512 1.219935 GGCGACACTCCGGGTATTT 59.780 57.895 0.00 0.00 0.00 1.40
3416 4513 0.392060 GGCGACACTCCGGGTATTTT 60.392 55.000 0.00 0.00 0.00 1.82
3417 4514 1.445871 GCGACACTCCGGGTATTTTT 58.554 50.000 0.00 0.00 0.00 1.94
3418 4515 1.129811 GCGACACTCCGGGTATTTTTG 59.870 52.381 0.00 0.00 0.00 2.44
3420 4517 3.068560 CGACACTCCGGGTATTTTTGAA 58.931 45.455 0.00 0.00 0.00 2.69
3422 4519 4.023878 CGACACTCCGGGTATTTTTGAAAA 60.024 41.667 0.00 0.00 0.00 2.29
3423 4520 5.335348 CGACACTCCGGGTATTTTTGAAAAT 60.335 40.000 0.00 6.88 41.24 1.82
3425 4522 7.527568 ACACTCCGGGTATTTTTGAAAATAA 57.472 32.000 0.00 0.00 41.14 1.40
3449 4546 8.691661 AAAAGTTTCCTTCTAAGCATAGTCAA 57.308 30.769 0.00 0.00 0.00 3.18
3498 4602 1.193323 AGCTACTCTGATGCTGCAGT 58.807 50.000 16.64 2.41 37.20 4.40
3553 4657 1.163554 CAGGTGCTTCTTTGCTCTCC 58.836 55.000 0.00 0.00 0.00 3.71
3554 4658 0.767375 AGGTGCTTCTTTGCTCTCCA 59.233 50.000 0.00 0.00 0.00 3.86
3598 4702 4.090057 GCTGGTGCGCCGTCTTTC 62.090 66.667 12.58 0.00 37.67 2.62
3673 4777 1.817099 CGGTGGAGGAGCATGCTTC 60.817 63.158 23.61 21.29 36.27 3.86
3697 4801 0.396556 TCACTAGGACCTGGCGCATA 60.397 55.000 10.83 0.00 0.00 3.14
3799 4903 1.692296 GCTTCTCGATGGTAGCGATC 58.308 55.000 0.00 0.00 37.13 3.69
3877 4981 4.042809 TGGAATTTCTCCTGGCTTTCTACA 59.957 41.667 0.00 0.00 45.64 2.74
3918 5022 2.708051 AGTCCACAGTGATCAATGCAG 58.292 47.619 22.33 14.88 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 60 4.366684 GGAGGTGGTTGGGGGCTG 62.367 72.222 0.00 0.00 0.00 4.85
80 88 4.162690 CGGGGGAAGAAGCGAGGG 62.163 72.222 0.00 0.00 0.00 4.30
81 89 4.840005 GCGGGGGAAGAAGCGAGG 62.840 72.222 0.00 0.00 0.00 4.63
82 90 4.840005 GGCGGGGGAAGAAGCGAG 62.840 72.222 0.00 0.00 0.00 5.03
98 122 2.606826 GATAGGTAGGGGCCGGGG 60.607 72.222 2.18 0.00 0.00 5.73
131 155 4.927782 GCGGCACACCACAGTCCA 62.928 66.667 0.00 0.00 34.57 4.02
175 199 1.502640 CGGGTGAGTCGAGTCAGAC 59.497 63.158 23.08 17.74 41.23 3.51
286 329 5.416947 AGAATTAGTTGTACAAGGTAGGCG 58.583 41.667 8.98 0.00 0.00 5.52
300 343 8.870075 AAGGAGTTGCTGATAAAGAATTAGTT 57.130 30.769 0.00 0.00 0.00 2.24
314 357 6.929606 AGTAACTACAAAGTAAGGAGTTGCTG 59.070 38.462 7.88 0.00 40.24 4.41
318 361 8.801299 GGAGTAGTAACTACAAAGTAAGGAGTT 58.199 37.037 0.00 0.00 39.22 3.01
337 380 9.833917 GGCAAATAAAGAATTACTAGGAGTAGT 57.166 33.333 0.00 0.00 42.49 2.73
338 381 9.832445 TGGCAAATAAAGAATTACTAGGAGTAG 57.168 33.333 0.00 0.00 31.47 2.57
340 383 8.957466 GTTGGCAAATAAAGAATTACTAGGAGT 58.043 33.333 0.00 0.00 0.00 3.85
341 384 9.178758 AGTTGGCAAATAAAGAATTACTAGGAG 57.821 33.333 0.00 0.00 0.00 3.69
342 385 9.528489 AAGTTGGCAAATAAAGAATTACTAGGA 57.472 29.630 0.00 0.00 0.00 2.94
343 386 9.788960 GAAGTTGGCAAATAAAGAATTACTAGG 57.211 33.333 0.00 0.00 0.00 3.02
346 389 9.077885 TGAGAAGTTGGCAAATAAAGAATTACT 57.922 29.630 0.00 0.00 0.00 2.24
353 396 5.403466 GCACTTGAGAAGTTGGCAAATAAAG 59.597 40.000 0.00 6.19 40.46 1.85
379 445 6.373186 TTGTCGAGGACACATGTATACTAG 57.627 41.667 0.00 0.00 42.60 2.57
382 448 3.797256 GCTTGTCGAGGACACATGTATAC 59.203 47.826 0.00 0.00 42.60 1.47
383 449 3.181479 GGCTTGTCGAGGACACATGTATA 60.181 47.826 0.00 0.00 42.60 1.47
384 450 2.418746 GGCTTGTCGAGGACACATGTAT 60.419 50.000 0.00 0.00 42.60 2.29
387 453 1.354337 CGGCTTGTCGAGGACACATG 61.354 60.000 0.00 0.00 42.60 3.21
406 472 1.728490 GCAGAAATGGATCGGGTGGC 61.728 60.000 0.00 0.00 0.00 5.01
410 476 2.546494 GGCGCAGAAATGGATCGGG 61.546 63.158 10.83 0.00 0.00 5.14
431 506 3.512516 GGTGCGGCATGAGAAGGC 61.513 66.667 5.72 0.00 0.00 4.35
432 507 0.107703 TAAGGTGCGGCATGAGAAGG 60.108 55.000 5.72 0.00 0.00 3.46
435 517 1.153369 GCTAAGGTGCGGCATGAGA 60.153 57.895 5.72 0.00 0.00 3.27
481 563 2.370349 TCGGAAGAAGTGCCACAAAAA 58.630 42.857 0.00 0.00 37.03 1.94
482 564 2.045561 TCGGAAGAAGTGCCACAAAA 57.954 45.000 0.00 0.00 37.03 2.44
483 565 3.790691 TCGGAAGAAGTGCCACAAA 57.209 47.368 0.00 0.00 37.03 2.83
489 571 7.954705 CTGGATCTCAGATCGGAAGAAGTGC 62.955 52.000 8.63 0.00 46.18 4.40
490 572 4.499526 CTGGATCTCAGATCGGAAGAAGTG 60.500 50.000 8.63 0.00 46.18 3.16
491 573 3.636300 CTGGATCTCAGATCGGAAGAAGT 59.364 47.826 8.63 0.00 46.18 3.01
492 574 3.888323 TCTGGATCTCAGATCGGAAGAAG 59.112 47.826 8.63 0.25 46.71 2.85
493 575 3.903467 TCTGGATCTCAGATCGGAAGAA 58.097 45.455 8.63 0.00 46.71 2.52
494 576 3.584733 TCTGGATCTCAGATCGGAAGA 57.415 47.619 8.63 8.58 46.71 2.87
503 585 1.136695 GCAGGTGAGTCTGGATCTCAG 59.863 57.143 5.18 5.18 41.66 3.35
517 601 1.108727 TTTGCTCCAGGTTGCAGGTG 61.109 55.000 9.25 0.00 40.46 4.00
538 622 2.763249 AGACACAAAAGCGCAAGAAG 57.237 45.000 11.47 0.00 43.02 2.85
542 626 3.119673 TGAGAAAAGACACAAAAGCGCAA 60.120 39.130 11.47 0.00 0.00 4.85
543 627 2.421775 TGAGAAAAGACACAAAAGCGCA 59.578 40.909 11.47 0.00 0.00 6.09
544 628 2.783832 GTGAGAAAAGACACAAAAGCGC 59.216 45.455 0.00 0.00 37.05 5.92
545 629 3.363178 GGTGAGAAAAGACACAAAAGCG 58.637 45.455 0.00 0.00 38.57 4.68
546 630 3.706698 GGGTGAGAAAAGACACAAAAGC 58.293 45.455 0.00 0.00 38.57 3.51
547 631 3.243068 CCGGGTGAGAAAAGACACAAAAG 60.243 47.826 0.00 0.00 38.57 2.27
548 632 2.685897 CCGGGTGAGAAAAGACACAAAA 59.314 45.455 0.00 0.00 38.57 2.44
549 633 2.294074 CCGGGTGAGAAAAGACACAAA 58.706 47.619 0.00 0.00 38.57 2.83
550 634 1.961793 CCGGGTGAGAAAAGACACAA 58.038 50.000 0.00 0.00 38.57 3.33
551 635 0.534203 GCCGGGTGAGAAAAGACACA 60.534 55.000 2.18 0.00 38.57 3.72
552 636 0.534203 TGCCGGGTGAGAAAAGACAC 60.534 55.000 2.18 0.00 36.44 3.67
553 637 0.250295 CTGCCGGGTGAGAAAAGACA 60.250 55.000 2.18 0.00 0.00 3.41
554 638 0.955919 CCTGCCGGGTGAGAAAAGAC 60.956 60.000 2.18 0.00 0.00 3.01
555 639 1.374947 CCTGCCGGGTGAGAAAAGA 59.625 57.895 2.18 0.00 0.00 2.52
556 640 3.987404 CCTGCCGGGTGAGAAAAG 58.013 61.111 2.18 0.00 0.00 2.27
568 652 3.248446 TACCGTGGAAGCACCTGCC 62.248 63.158 0.00 0.00 43.38 4.85
569 653 1.741770 CTACCGTGGAAGCACCTGC 60.742 63.158 0.00 0.00 39.86 4.85
570 654 0.537188 ATCTACCGTGGAAGCACCTG 59.463 55.000 0.00 0.00 39.86 4.00
571 655 1.276622 AATCTACCGTGGAAGCACCT 58.723 50.000 0.00 0.00 39.86 4.00
572 656 1.737793 CAAATCTACCGTGGAAGCACC 59.262 52.381 0.00 0.00 39.54 5.01
573 657 2.673368 CTCAAATCTACCGTGGAAGCAC 59.327 50.000 0.00 0.00 0.00 4.40
574 658 2.354704 CCTCAAATCTACCGTGGAAGCA 60.355 50.000 0.00 0.00 0.00 3.91
575 659 2.280628 CCTCAAATCTACCGTGGAAGC 58.719 52.381 0.00 0.00 0.00 3.86
576 660 2.093447 AGCCTCAAATCTACCGTGGAAG 60.093 50.000 0.00 0.00 0.00 3.46
577 661 1.906574 AGCCTCAAATCTACCGTGGAA 59.093 47.619 0.00 0.00 0.00 3.53
578 662 1.568504 AGCCTCAAATCTACCGTGGA 58.431 50.000 0.00 0.00 0.00 4.02
579 663 3.536956 TTAGCCTCAAATCTACCGTGG 57.463 47.619 0.00 0.00 0.00 4.94
580 664 4.260784 GCAATTAGCCTCAAATCTACCGTG 60.261 45.833 0.00 0.00 37.23 4.94
581 665 3.877508 GCAATTAGCCTCAAATCTACCGT 59.122 43.478 0.00 0.00 37.23 4.83
582 666 3.876914 TGCAATTAGCCTCAAATCTACCG 59.123 43.478 0.00 0.00 44.83 4.02
583 667 4.884164 ACTGCAATTAGCCTCAAATCTACC 59.116 41.667 0.00 0.00 44.83 3.18
584 668 6.442513 AACTGCAATTAGCCTCAAATCTAC 57.557 37.500 0.00 0.00 44.83 2.59
585 669 7.039784 ACAAAACTGCAATTAGCCTCAAATCTA 60.040 33.333 0.00 0.00 44.83 1.98
586 670 5.990120 AAACTGCAATTAGCCTCAAATCT 57.010 34.783 0.00 0.00 44.83 2.40
587 671 5.928264 ACAAAACTGCAATTAGCCTCAAATC 59.072 36.000 0.00 0.00 44.83 2.17
588 672 5.697633 CACAAAACTGCAATTAGCCTCAAAT 59.302 36.000 0.00 0.00 44.83 2.32
589 673 5.049167 CACAAAACTGCAATTAGCCTCAAA 58.951 37.500 0.00 0.00 44.83 2.69
590 674 4.099266 ACACAAAACTGCAATTAGCCTCAA 59.901 37.500 0.00 0.00 44.83 3.02
591 675 3.636300 ACACAAAACTGCAATTAGCCTCA 59.364 39.130 0.00 0.00 44.83 3.86
592 676 4.243007 ACACAAAACTGCAATTAGCCTC 57.757 40.909 0.00 0.00 44.83 4.70
593 677 4.670896 AACACAAAACTGCAATTAGCCT 57.329 36.364 0.00 0.00 44.83 4.58
594 678 4.570369 ACAAACACAAAACTGCAATTAGCC 59.430 37.500 0.00 0.00 44.83 3.93
595 679 5.717038 ACAAACACAAAACTGCAATTAGC 57.283 34.783 0.00 0.00 45.96 3.09
598 682 8.180920 GGATAAAACAAACACAAAACTGCAATT 58.819 29.630 0.00 0.00 0.00 2.32
599 683 7.465245 CGGATAAAACAAACACAAAACTGCAAT 60.465 33.333 0.00 0.00 0.00 3.56
605 690 6.020201 CCTCACGGATAAAACAAACACAAAAC 60.020 38.462 0.00 0.00 0.00 2.43
634 731 4.497006 GGCATGAGAATGAACCTCAAATCG 60.497 45.833 0.00 0.00 43.07 3.34
646 743 1.547223 GGAGGGATGGGCATGAGAATG 60.547 57.143 0.00 0.00 0.00 2.67
650 747 2.838467 GGGGAGGGATGGGCATGAG 61.838 68.421 0.00 0.00 0.00 2.90
651 748 2.778278 GGGGAGGGATGGGCATGA 60.778 66.667 0.00 0.00 0.00 3.07
652 749 2.780040 AGGGGAGGGATGGGCATG 60.780 66.667 0.00 0.00 0.00 4.06
653 750 2.451294 GAGGGGAGGGATGGGCAT 60.451 66.667 0.00 0.00 0.00 4.40
654 751 4.843331 GGAGGGGAGGGATGGGCA 62.843 72.222 0.00 0.00 0.00 5.36
655 752 4.523282 AGGAGGGGAGGGATGGGC 62.523 72.222 0.00 0.00 0.00 5.36
669 766 2.573009 TCATGACAGCCTCAAATCAGGA 59.427 45.455 0.00 0.00 35.20 3.86
670 767 2.995283 TCATGACAGCCTCAAATCAGG 58.005 47.619 0.00 0.00 36.50 3.86
671 768 5.578005 AATTCATGACAGCCTCAAATCAG 57.422 39.130 0.00 0.00 30.60 2.90
672 769 5.988310 AAATTCATGACAGCCTCAAATCA 57.012 34.783 0.00 0.00 30.60 2.57
673 770 6.474751 GCTTAAATTCATGACAGCCTCAAATC 59.525 38.462 0.00 0.00 30.60 2.17
674 771 6.335777 GCTTAAATTCATGACAGCCTCAAAT 58.664 36.000 0.00 0.00 30.60 2.32
676 773 4.158394 GGCTTAAATTCATGACAGCCTCAA 59.842 41.667 16.49 0.00 43.06 3.02
677 774 3.696051 GGCTTAAATTCATGACAGCCTCA 59.304 43.478 16.49 0.00 43.06 3.86
678 775 3.067320 GGGCTTAAATTCATGACAGCCTC 59.933 47.826 20.35 11.90 45.29 4.70
679 776 3.026694 GGGCTTAAATTCATGACAGCCT 58.973 45.455 20.35 0.08 45.29 4.58
680 777 2.760092 TGGGCTTAAATTCATGACAGCC 59.240 45.455 15.85 15.85 45.24 4.85
698 1230 1.001641 CAGGAGAGGCCAAGTTGGG 60.002 63.158 23.36 5.56 38.19 4.12
728 1458 7.922811 GGCCAAATTGGACTGAGATTTTATAAG 59.077 37.037 17.47 0.00 44.12 1.73
748 1527 1.484038 AAAGTGCAACAGAGGCCAAA 58.516 45.000 5.01 0.00 41.43 3.28
808 1587 7.010645 GCCAAGTTGGAACGAATTTCTTAAAAA 59.989 33.333 26.52 0.00 40.96 1.94
809 1588 6.477360 GCCAAGTTGGAACGAATTTCTTAAAA 59.523 34.615 26.52 0.00 40.96 1.52
810 1589 5.980715 GCCAAGTTGGAACGAATTTCTTAAA 59.019 36.000 26.52 0.00 40.96 1.52
811 1590 5.508320 GGCCAAGTTGGAACGAATTTCTTAA 60.508 40.000 26.52 0.00 40.96 1.85
812 1591 4.022676 GGCCAAGTTGGAACGAATTTCTTA 60.023 41.667 26.52 0.00 40.96 2.10
813 1592 3.243737 GGCCAAGTTGGAACGAATTTCTT 60.244 43.478 26.52 0.00 40.96 2.52
814 1593 2.296190 GGCCAAGTTGGAACGAATTTCT 59.704 45.455 26.52 0.00 40.96 2.52
815 1594 2.296190 AGGCCAAGTTGGAACGAATTTC 59.704 45.455 26.52 3.98 40.96 2.17
816 1595 2.296190 GAGGCCAAGTTGGAACGAATTT 59.704 45.455 26.52 1.01 40.96 1.82
817 1596 1.886542 GAGGCCAAGTTGGAACGAATT 59.113 47.619 26.52 1.38 40.96 2.17
818 1597 1.534729 GAGGCCAAGTTGGAACGAAT 58.465 50.000 26.52 3.49 40.96 3.34
819 1598 0.882927 CGAGGCCAAGTTGGAACGAA 60.883 55.000 26.52 0.00 40.96 3.85
820 1599 1.301401 CGAGGCCAAGTTGGAACGA 60.301 57.895 26.52 0.00 40.96 3.85
821 1600 2.966309 GCGAGGCCAAGTTGGAACG 61.966 63.158 26.52 23.87 40.96 3.95
822 1601 2.954611 GCGAGGCCAAGTTGGAAC 59.045 61.111 26.52 16.60 40.96 3.62
833 1612 4.704833 TGGAAGTGCAGGCGAGGC 62.705 66.667 0.00 0.00 0.00 4.70
834 1613 2.435586 CTGGAAGTGCAGGCGAGG 60.436 66.667 0.00 0.00 0.00 4.63
853 1632 9.844790 CAGCTCAAGTATGACAATTTTATGAAA 57.155 29.630 0.00 0.00 0.00 2.69
854 1633 9.013229 ACAGCTCAAGTATGACAATTTTATGAA 57.987 29.630 0.00 0.00 0.00 2.57
855 1634 8.453320 CACAGCTCAAGTATGACAATTTTATGA 58.547 33.333 0.00 0.00 0.00 2.15
856 1635 8.239314 ACACAGCTCAAGTATGACAATTTTATG 58.761 33.333 0.00 0.00 0.00 1.90
857 1636 8.239314 CACACAGCTCAAGTATGACAATTTTAT 58.761 33.333 0.00 0.00 0.00 1.40
858 1637 7.443879 TCACACAGCTCAAGTATGACAATTTTA 59.556 33.333 0.00 0.00 0.00 1.52
859 1638 6.262944 TCACACAGCTCAAGTATGACAATTTT 59.737 34.615 0.00 0.00 0.00 1.82
860 1639 5.764686 TCACACAGCTCAAGTATGACAATTT 59.235 36.000 0.00 0.00 0.00 1.82
861 1640 5.180117 GTCACACAGCTCAAGTATGACAATT 59.820 40.000 8.72 0.00 36.00 2.32
862 1641 4.692625 GTCACACAGCTCAAGTATGACAAT 59.307 41.667 8.72 0.00 36.00 2.71
867 1646 3.434641 CCTTGTCACACAGCTCAAGTATG 59.565 47.826 9.09 0.00 36.53 2.39
885 1664 5.245977 ACATATTTCAGGGGACAAAACCTTG 59.754 40.000 0.00 0.00 34.05 3.61
887 1666 5.010708 ACATATTTCAGGGGACAAAACCT 57.989 39.130 0.00 0.00 37.66 3.50
894 1695 3.953612 TGCATGAACATATTTCAGGGGAC 59.046 43.478 0.00 1.16 31.59 4.46
899 1700 8.429493 TCTTACTCTGCATGAACATATTTCAG 57.571 34.615 0.00 0.00 0.00 3.02
902 1703 6.018425 CGCTCTTACTCTGCATGAACATATTT 60.018 38.462 0.00 0.00 0.00 1.40
935 1736 1.135575 CGAGGAACATTCAGCAAAGGC 60.136 52.381 0.00 0.00 41.61 4.35
937 1738 2.417933 CTCCGAGGAACATTCAGCAAAG 59.582 50.000 0.00 0.00 0.00 2.77
938 1739 2.224523 ACTCCGAGGAACATTCAGCAAA 60.225 45.455 0.00 0.00 0.00 3.68
954 1755 1.576421 GCAGGCTTGTCAAACTCCG 59.424 57.895 0.00 0.00 0.00 4.63
955 1756 0.538287 AGGCAGGCTTGTCAAACTCC 60.538 55.000 2.31 0.00 0.00 3.85
974 1775 1.450134 CTCAGTTGCTATGGCGGCA 60.450 57.895 16.34 16.34 42.25 5.69
975 1776 0.179084 TACTCAGTTGCTATGGCGGC 60.179 55.000 0.00 0.00 42.25 6.53
977 1778 7.545615 TCATTATTATACTCAGTTGCTATGGCG 59.454 37.037 0.00 0.00 42.25 5.69
978 1779 8.777865 TCATTATTATACTCAGTTGCTATGGC 57.222 34.615 0.00 0.00 39.26 4.40
979 1780 8.877779 GCTCATTATTATACTCAGTTGCTATGG 58.122 37.037 0.00 0.00 0.00 2.74
980 1781 9.650539 AGCTCATTATTATACTCAGTTGCTATG 57.349 33.333 0.00 0.00 0.00 2.23
981 1782 9.650539 CAGCTCATTATTATACTCAGTTGCTAT 57.349 33.333 0.00 0.00 0.00 2.97
982 1783 8.090831 CCAGCTCATTATTATACTCAGTTGCTA 58.909 37.037 0.00 0.00 0.00 3.49
984 1785 6.708054 ACCAGCTCATTATTATACTCAGTTGC 59.292 38.462 0.00 0.00 0.00 4.17
986 1787 7.796054 ACACCAGCTCATTATTATACTCAGTT 58.204 34.615 0.00 0.00 0.00 3.16
987 1788 7.366847 ACACCAGCTCATTATTATACTCAGT 57.633 36.000 0.00 0.00 0.00 3.41
988 1789 7.307632 GCAACACCAGCTCATTATTATACTCAG 60.308 40.741 0.00 0.00 0.00 3.35
989 1790 6.483307 GCAACACCAGCTCATTATTATACTCA 59.517 38.462 0.00 0.00 0.00 3.41
991 1792 5.765182 GGCAACACCAGCTCATTATTATACT 59.235 40.000 0.00 0.00 38.86 2.12
992 1793 5.765182 AGGCAACACCAGCTCATTATTATAC 59.235 40.000 0.00 0.00 43.14 1.47
993 1794 5.940617 AGGCAACACCAGCTCATTATTATA 58.059 37.500 0.00 0.00 43.14 0.98
994 1795 4.796606 AGGCAACACCAGCTCATTATTAT 58.203 39.130 0.00 0.00 43.14 1.28
995 1796 4.199310 GAGGCAACACCAGCTCATTATTA 58.801 43.478 0.00 0.00 43.14 0.98
996 1797 3.019564 GAGGCAACACCAGCTCATTATT 58.980 45.455 0.00 0.00 43.14 1.40
1044 1851 6.412362 TGCCTATGGAAGTAGAGATTCTTC 57.588 41.667 0.00 0.00 39.21 2.87
1047 1854 5.918608 TGTTGCCTATGGAAGTAGAGATTC 58.081 41.667 0.00 0.00 0.00 2.52
1058 1865 3.387962 AGATTCTCCTGTTGCCTATGGA 58.612 45.455 0.00 0.00 0.00 3.41
1065 1872 3.932089 GAGAGTTGAGATTCTCCTGTTGC 59.068 47.826 11.12 0.00 33.75 4.17
1080 1887 3.425359 CGCTTATGCTGGTTTGAGAGTTG 60.425 47.826 0.00 0.00 36.97 3.16
1081 1888 2.744202 CGCTTATGCTGGTTTGAGAGTT 59.256 45.455 0.00 0.00 36.97 3.01
1084 1891 1.003118 ACCGCTTATGCTGGTTTGAGA 59.997 47.619 10.03 0.00 40.98 3.27
1086 1893 2.772077 TACCGCTTATGCTGGTTTGA 57.228 45.000 17.51 3.28 42.64 2.69
1091 1898 0.179045 AGCCTTACCGCTTATGCTGG 60.179 55.000 9.02 9.02 34.73 4.85
1119 1926 3.059935 GCTGTTGGGTAAATTTTGCAACG 60.060 43.478 0.00 0.00 0.00 4.10
1145 1952 5.771469 TCACAGGTCATAACAGCAAAATTG 58.229 37.500 0.00 0.00 0.00 2.32
1147 1954 5.622914 GCATCACAGGTCATAACAGCAAAAT 60.623 40.000 0.00 0.00 0.00 1.82
1148 1955 4.321156 GCATCACAGGTCATAACAGCAAAA 60.321 41.667 0.00 0.00 0.00 2.44
1153 1962 3.272574 AGGCATCACAGGTCATAACAG 57.727 47.619 0.00 0.00 0.00 3.16
1163 1972 6.204301 CAGAATACTCCATTAAGGCATCACAG 59.796 42.308 0.00 0.00 37.29 3.66
1177 1987 3.776969 AGAAGTGATGGCAGAATACTCCA 59.223 43.478 0.00 0.00 0.00 3.86
1179 1989 5.181748 ACAAGAAGTGATGGCAGAATACTC 58.818 41.667 0.00 0.00 0.00 2.59
1188 2003 1.541588 GTGGGAACAAGAAGTGATGGC 59.458 52.381 0.00 0.00 46.06 4.40
1195 2010 4.010349 GGATAAGTGGTGGGAACAAGAAG 58.990 47.826 0.00 0.00 46.06 2.85
1198 2013 2.041081 TGGGATAAGTGGTGGGAACAAG 59.959 50.000 0.00 0.00 46.06 3.16
1227 2046 9.602568 TTTAGTTTCGGCATGTCTGTAATTATA 57.397 29.630 0.00 0.00 0.00 0.98
1228 2047 8.500753 TTTAGTTTCGGCATGTCTGTAATTAT 57.499 30.769 0.00 0.00 0.00 1.28
1239 2084 5.942872 AGATGAACTTTTAGTTTCGGCATG 58.057 37.500 0.00 0.00 38.80 4.06
1263 2109 1.899814 TGGTAGGTAAGGTGCAGACAG 59.100 52.381 0.00 0.00 0.00 3.51
1264 2110 2.018355 TGGTAGGTAAGGTGCAGACA 57.982 50.000 0.00 0.00 0.00 3.41
1265 2111 2.158943 GGATGGTAGGTAAGGTGCAGAC 60.159 54.545 0.00 0.00 0.00 3.51
1266 2112 2.116238 GGATGGTAGGTAAGGTGCAGA 58.884 52.381 0.00 0.00 0.00 4.26
1273 2119 9.462606 AAAATTTAGTTCAGGATGGTAGGTAAG 57.537 33.333 0.00 0.00 36.16 2.34
1278 2124 7.393234 TGTCCAAAATTTAGTTCAGGATGGTAG 59.607 37.037 0.00 0.00 36.16 3.18
1281 2127 6.588719 TGTCCAAAATTTAGTTCAGGATGG 57.411 37.500 0.00 0.00 36.16 3.51
1309 2155 7.870445 GCAACATTTGGAAGGATGTTTAGTTAA 59.130 33.333 0.00 0.00 42.18 2.01
1325 2171 2.409975 CCTGAAAGCAGCAACATTTGG 58.590 47.619 0.00 0.00 40.91 3.28
1352 2214 3.517100 AGAGCCTTATGTTCTTCTCAGCA 59.483 43.478 0.00 0.00 0.00 4.41
1379 2241 6.127925 TGGTTGCTAATTTCAACTGAGCATAG 60.128 38.462 17.27 0.00 42.39 2.23
1396 2258 2.215196 GGTCGAAGTTGTTGGTTGCTA 58.785 47.619 0.00 0.00 0.00 3.49
1404 2266 1.088306 TTGTTGCGGTCGAAGTTGTT 58.912 45.000 0.00 0.00 0.00 2.83
1548 2410 2.987232 GGGTTCCCTGAACACAGATAC 58.013 52.381 9.01 0.00 44.47 2.24
1609 2472 1.895707 GATGCCCTGCCTGGATTCG 60.896 63.158 0.00 0.00 38.35 3.34
1687 2550 1.695893 CGACGCAACAGCCGATCAAT 61.696 55.000 0.00 0.00 0.00 2.57
1714 2577 5.643379 ACTCATACACCAAAATGCGATTT 57.357 34.783 0.00 0.00 0.00 2.17
1717 2580 3.936453 GGTACTCATACACCAAAATGCGA 59.064 43.478 0.00 0.00 34.77 5.10
1741 2604 1.446966 GTCGAGGCTGCTGTTCTCC 60.447 63.158 0.00 0.00 0.00 3.71
1756 2619 2.149803 TACCCAAGAGTGCACGGTCG 62.150 60.000 15.50 4.73 0.00 4.79
1780 2643 6.784031 AGTGACAGGAGAATAGGTTCATTTT 58.216 36.000 0.00 0.00 36.79 1.82
1781 2644 6.380079 AGTGACAGGAGAATAGGTTCATTT 57.620 37.500 0.00 0.00 36.79 2.32
1782 2645 7.682787 ATAGTGACAGGAGAATAGGTTCATT 57.317 36.000 0.00 0.00 36.79 2.57
1783 2646 8.964533 ATATAGTGACAGGAGAATAGGTTCAT 57.035 34.615 0.00 0.00 36.79 2.57
1784 2647 8.783660 AATATAGTGACAGGAGAATAGGTTCA 57.216 34.615 0.00 0.00 36.79 3.18
1787 2650 9.656323 TGTTAATATAGTGACAGGAGAATAGGT 57.344 33.333 0.00 0.00 0.00 3.08
1796 2659 8.908786 AATCACCATGTTAATATAGTGACAGG 57.091 34.615 13.89 3.62 37.10 4.00
1823 2686 4.583073 AGGTAAACTGTTAAGCCACAAAGG 59.417 41.667 0.00 0.00 41.84 3.11
1829 2692 3.886505 CCACAAGGTAAACTGTTAAGCCA 59.113 43.478 0.00 0.00 0.00 4.75
1851 2716 3.728845 TCACTGTTAGAAGCTGTGGAAC 58.271 45.455 0.00 0.00 36.74 3.62
1856 2721 2.093973 CCGGATCACTGTTAGAAGCTGT 60.094 50.000 0.00 0.00 0.00 4.40
1860 2725 1.207089 TGGCCGGATCACTGTTAGAAG 59.793 52.381 5.05 0.00 0.00 2.85
1861 2726 1.271856 TGGCCGGATCACTGTTAGAA 58.728 50.000 5.05 0.00 0.00 2.10
1870 2735 2.757868 CCAAGTAAAATTGGCCGGATCA 59.242 45.455 5.05 0.00 43.12 2.92
1879 2744 7.396540 AGACCTTATGCTCCAAGTAAAATTG 57.603 36.000 0.00 0.00 0.00 2.32
1888 2753 5.624159 CATATGGAAGACCTTATGCTCCAA 58.376 41.667 0.00 0.00 42.84 3.53
1895 2760 4.287067 ACCGATGCATATGGAAGACCTTAT 59.713 41.667 21.12 0.00 37.11 1.73
1900 2765 2.838736 ACACCGATGCATATGGAAGAC 58.161 47.619 21.12 0.00 0.00 3.01
1924 2789 3.788672 CAGGTATGCAAGACCCCTC 57.211 57.895 15.67 0.00 37.73 4.30
2059 2924 4.282449 CGGGTACTGATGTGGGTGATATTA 59.718 45.833 0.00 0.00 36.31 0.98
2095 2960 1.425412 AACCGCAATGTACTCACGTC 58.575 50.000 0.00 0.00 0.00 4.34
2180 3045 6.493166 ACAATGGGATAGATGAAACCAGAAA 58.507 36.000 0.00 0.00 34.23 2.52
2211 3076 2.644151 ACAGGGGAATAAACAGGGAGT 58.356 47.619 0.00 0.00 0.00 3.85
2226 3091 5.123979 GCAGAGTTAATTCAAGGTAACAGGG 59.876 44.000 0.44 0.00 41.41 4.45
2323 3188 1.971357 AGGACCCCGAAGCTGTATATG 59.029 52.381 0.00 0.00 0.00 1.78
2439 3304 5.407995 GCAGATAAGCAGGTATAAGAAGCAG 59.592 44.000 0.00 0.00 0.00 4.24
2511 3503 5.741011 AGTTTTACTGGACAGTCTTGTTGA 58.259 37.500 8.44 0.00 42.54 3.18
2596 3613 9.932207 ATCATTTCATGCTTGTGAATCTTTTAA 57.068 25.926 0.00 0.00 37.88 1.52
2597 3614 9.932207 AATCATTTCATGCTTGTGAATCTTTTA 57.068 25.926 0.00 0.00 37.88 1.52
2607 3624 8.086522 GGCTGATATAAATCATTTCATGCTTGT 58.913 33.333 0.00 0.00 41.29 3.16
2615 3632 8.845413 AGACTGAGGCTGATATAAATCATTTC 57.155 34.615 0.00 0.00 41.29 2.17
2628 3645 6.456501 GTTTAAGAGTTTAGACTGAGGCTGA 58.543 40.000 0.00 0.00 35.88 4.26
2636 3653 9.274206 GAATGTTCAGGTTTAAGAGTTTAGACT 57.726 33.333 0.00 0.00 39.32 3.24
2638 3655 9.052759 GTGAATGTTCAGGTTTAAGAGTTTAGA 57.947 33.333 0.00 0.00 37.98 2.10
2639 3656 8.290325 GGTGAATGTTCAGGTTTAAGAGTTTAG 58.710 37.037 0.00 0.00 37.98 1.85
2640 3657 7.041644 CGGTGAATGTTCAGGTTTAAGAGTTTA 60.042 37.037 0.00 0.00 37.98 2.01
2641 3658 6.238648 CGGTGAATGTTCAGGTTTAAGAGTTT 60.239 38.462 0.00 0.00 37.98 2.66
2642 3659 5.238650 CGGTGAATGTTCAGGTTTAAGAGTT 59.761 40.000 0.00 0.00 37.98 3.01
2643 3660 4.755123 CGGTGAATGTTCAGGTTTAAGAGT 59.245 41.667 0.00 0.00 37.98 3.24
2644 3661 4.378459 GCGGTGAATGTTCAGGTTTAAGAG 60.378 45.833 0.00 0.00 37.98 2.85
2647 3664 3.215151 TGCGGTGAATGTTCAGGTTTAA 58.785 40.909 0.00 0.00 37.98 1.52
2651 3668 0.396435 TCTGCGGTGAATGTTCAGGT 59.604 50.000 0.00 0.00 37.98 4.00
2662 3683 2.743928 GCTCCCAAGTCTGCGGTG 60.744 66.667 0.00 0.00 0.00 4.94
2665 3686 0.176680 ATACAGCTCCCAAGTCTGCG 59.823 55.000 0.00 0.00 32.93 5.18
2666 3687 1.208052 TCATACAGCTCCCAAGTCTGC 59.792 52.381 0.00 0.00 32.93 4.26
2813 3834 2.487265 GGACAACATCTTCACCACCTGT 60.487 50.000 0.00 0.00 0.00 4.00
2829 3850 0.331278 ATCCGGATTGGCTTGGACAA 59.669 50.000 12.38 0.00 37.80 3.18
2855 3876 2.765356 CGGCGCTGTCAGCTCTCTA 61.765 63.158 22.13 0.00 39.60 2.43
2867 3888 3.849951 CTGATGTACCCCGGCGCT 61.850 66.667 7.64 0.00 0.00 5.92
2912 3933 4.070552 GAGTCGCTGGAGGCCGTT 62.071 66.667 0.00 0.00 37.74 4.44
3030 4051 2.860971 AAAGCAGGCCACCCTCCT 60.861 61.111 5.01 0.00 40.33 3.69
3040 4062 5.467035 TGGAAATAAAGGAACAAAGCAGG 57.533 39.130 0.00 0.00 0.00 4.85
3057 4079 6.716173 GGTACTGTAACCCTACAAAATGGAAA 59.284 38.462 0.00 0.00 37.58 3.13
3065 4087 5.895534 CCTCTATGGTACTGTAACCCTACAA 59.104 44.000 0.00 0.00 37.58 2.41
3122 4165 6.613755 TTTACAACTTCTAACTTGCCTCAC 57.386 37.500 0.00 0.00 0.00 3.51
3124 4167 7.435068 TCATTTACAACTTCTAACTTGCCTC 57.565 36.000 0.00 0.00 0.00 4.70
3126 4169 9.162764 TCTATCATTTACAACTTCTAACTTGCC 57.837 33.333 0.00 0.00 0.00 4.52
3197 4248 1.202417 ACGACATGCCTGATTCTACCG 60.202 52.381 0.00 0.00 0.00 4.02
3216 4304 5.698545 AGCTGAGAAGTTAACTGAATGTGAC 59.301 40.000 9.34 0.00 0.00 3.67
3265 4353 1.015609 TCCTGGTCCCAGACTGGATA 58.984 55.000 23.77 7.74 46.30 2.59
3267 4355 1.079256 CTCCTGGTCCCAGACTGGA 59.921 63.158 23.77 6.31 46.30 3.86
3277 4373 5.467063 CACTCTTTACTGTTTTCTCCTGGTC 59.533 44.000 0.00 0.00 0.00 4.02
3294 4390 2.493278 ACAGCAAACAACTGCACTCTTT 59.507 40.909 0.00 0.00 45.18 2.52
3338 4434 4.159321 CAGGATGGCTATGTATCGATCAGT 59.841 45.833 0.00 0.00 0.00 3.41
3394 4491 1.105759 ATACCCGGAGTGTCGCCTAC 61.106 60.000 0.73 0.00 0.00 3.18
3395 4492 0.396139 AATACCCGGAGTGTCGCCTA 60.396 55.000 0.73 0.00 0.00 3.93
3433 4530 5.814705 CCAGAACCTTGACTATGCTTAGAAG 59.185 44.000 13.22 7.23 0.00 2.85
3434 4531 5.248477 ACCAGAACCTTGACTATGCTTAGAA 59.752 40.000 13.22 0.00 0.00 2.10
3449 4546 6.184789 TCTTTTTACAGAAACACCAGAACCT 58.815 36.000 0.00 0.00 0.00 3.50
3498 4602 0.329931 AGAGACGGAGAAGGAGCAGA 59.670 55.000 0.00 0.00 0.00 4.26
3535 4639 0.767375 TGGAGAGCAAAGAAGCACCT 59.233 50.000 0.00 0.00 36.85 4.00
3571 4675 2.922950 CGCACCAGCACCAGCAAAT 61.923 57.895 0.00 0.00 45.49 2.32
3658 4762 1.077930 GCTGAAGCATGCTCCTCCA 60.078 57.895 22.93 15.06 41.59 3.86
3661 4765 0.327259 TGAAGCTGAAGCATGCTCCT 59.673 50.000 22.93 6.03 45.16 3.69
3673 4777 0.107945 GCCAGGTCCTAGTGAAGCTG 60.108 60.000 0.00 8.48 39.98 4.24
3799 4903 0.249784 CGGAGCTCATCCCACATGAG 60.250 60.000 17.19 7.16 46.50 2.90
3877 4981 4.160252 ACTTGTGGTGTTCTGCAGATTTTT 59.840 37.500 19.04 0.00 0.00 1.94
3939 5043 4.827284 CGTGAGGGGGCATTTCTTAATTAT 59.173 41.667 0.00 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.