Multiple sequence alignment - TraesCS2A01G542700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G542700 chr2A 100.000 2582 0 0 1 2582 753117212 753114631 0.000000e+00 4769.0
1 TraesCS2A01G542700 chr2A 87.692 130 12 3 1069 1195 673327388 673327516 5.760000e-32 148.0
2 TraesCS2A01G542700 chr2B 86.843 1999 129 74 210 2139 762215111 762213178 0.000000e+00 2111.0
3 TraesCS2A01G542700 chr2B 83.249 394 48 10 1789 2179 762207692 762207314 1.900000e-91 346.0
4 TraesCS2A01G542700 chr2B 86.154 130 14 3 1069 1195 627073527 627073655 1.250000e-28 137.0
5 TraesCS2A01G542700 chr2B 85.965 114 9 5 84 194 762215206 762215097 5.840000e-22 115.0
6 TraesCS2A01G542700 chr2D 87.675 1712 123 45 218 1883 621406036 621404367 0.000000e+00 1912.0
7 TraesCS2A01G542700 chr2D 82.263 654 60 17 1966 2581 621404345 621403710 4.930000e-142 514.0
8 TraesCS2A01G542700 chr2D 86.923 130 13 3 1069 1195 528635720 528635848 2.680000e-30 143.0
9 TraesCS2A01G542700 chr6B 84.091 220 30 3 1017 1235 239729218 239729433 9.360000e-50 207.0
10 TraesCS2A01G542700 chr6A 84.091 220 30 3 1017 1235 183188144 183188359 9.360000e-50 207.0
11 TraesCS2A01G542700 chr6A 81.714 175 21 10 1066 1233 454712224 454712054 4.480000e-28 135.0
12 TraesCS2A01G542700 chr6D 80.571 175 23 10 1066 1233 317105970 317105800 9.700000e-25 124.0
13 TraesCS2A01G542700 chr7D 82.906 117 15 4 2218 2332 540614603 540614490 1.630000e-17 100.0
14 TraesCS2A01G542700 chr7D 82.051 117 17 3 2218 2332 514882053 514881939 2.110000e-16 97.1
15 TraesCS2A01G542700 chr7B 79.487 117 20 2 2218 2332 672796531 672796417 2.130000e-11 80.5
16 TraesCS2A01G542700 chr3D 97.674 43 1 0 2219 2261 571063087 571063129 9.910000e-10 75.0
17 TraesCS2A01G542700 chr1A 90.385 52 5 0 2221 2272 13591904 13591853 4.610000e-08 69.4
18 TraesCS2A01G542700 chrUn 95.238 42 2 0 2220 2261 32054493 32054534 1.660000e-07 67.6
19 TraesCS2A01G542700 chr3A 92.857 42 3 0 2218 2259 151312976 151313017 7.710000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G542700 chr2A 753114631 753117212 2581 True 4769 4769 100.000 1 2582 1 chr2A.!!$R1 2581
1 TraesCS2A01G542700 chr2B 762213178 762215206 2028 True 1113 2111 86.404 84 2139 2 chr2B.!!$R2 2055
2 TraesCS2A01G542700 chr2D 621403710 621406036 2326 True 1213 1912 84.969 218 2581 2 chr2D.!!$R1 2363

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 319 0.107848 ACGATCCGATCCAACCCAAC 60.108 55.0 2.69 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1702 1794 0.036388 AGTGCTGGTGGTACAATCGG 60.036 55.0 0.0 0.0 44.16 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.343972 CGCCACAGTGGAACAAGG 58.656 61.111 24.96 0.49 44.16 3.61
18 19 1.227823 CGCCACAGTGGAACAAGGA 60.228 57.895 24.96 0.00 44.16 3.36
19 20 0.817634 CGCCACAGTGGAACAAGGAA 60.818 55.000 24.96 0.00 44.16 3.36
20 21 0.668535 GCCACAGTGGAACAAGGAAC 59.331 55.000 24.96 0.00 44.16 3.62
21 22 2.021723 GCCACAGTGGAACAAGGAACA 61.022 52.381 24.96 0.00 44.16 3.18
22 23 1.949525 CCACAGTGGAACAAGGAACAG 59.050 52.381 15.35 0.00 44.16 3.16
23 24 2.421388 CCACAGTGGAACAAGGAACAGA 60.421 50.000 15.35 0.00 44.16 3.41
24 25 2.874701 CACAGTGGAACAAGGAACAGAG 59.125 50.000 0.00 0.00 44.16 3.35
25 26 1.876156 CAGTGGAACAAGGAACAGAGC 59.124 52.381 0.00 0.00 44.16 4.09
26 27 1.202818 AGTGGAACAAGGAACAGAGCC 60.203 52.381 0.00 0.00 44.16 4.70
27 28 1.140312 TGGAACAAGGAACAGAGCCT 58.860 50.000 0.00 0.00 37.35 4.58
28 29 1.072331 TGGAACAAGGAACAGAGCCTC 59.928 52.381 0.00 0.00 33.76 4.70
29 30 1.349357 GGAACAAGGAACAGAGCCTCT 59.651 52.381 0.00 0.00 33.76 3.69
30 31 2.567615 GGAACAAGGAACAGAGCCTCTA 59.432 50.000 0.00 0.00 33.76 2.43
31 32 3.368948 GGAACAAGGAACAGAGCCTCTAG 60.369 52.174 0.00 0.00 33.76 2.43
32 33 2.183679 ACAAGGAACAGAGCCTCTAGG 58.816 52.381 0.00 0.00 33.76 3.02
42 43 2.998949 CCTCTAGGCCACAACCCC 59.001 66.667 5.01 0.00 0.00 4.95
43 44 1.923395 CCTCTAGGCCACAACCCCA 60.923 63.158 5.01 0.00 0.00 4.96
44 45 1.299976 CTCTAGGCCACAACCCCAC 59.700 63.158 5.01 0.00 0.00 4.61
45 46 2.198304 CTCTAGGCCACAACCCCACC 62.198 65.000 5.01 0.00 0.00 4.61
46 47 3.261677 TAGGCCACAACCCCACCC 61.262 66.667 5.01 0.00 0.00 4.61
51 52 4.317444 CACAACCCCACCCGCGTA 62.317 66.667 4.92 0.00 0.00 4.42
52 53 3.558276 ACAACCCCACCCGCGTAA 61.558 61.111 4.92 0.00 0.00 3.18
53 54 2.045731 CAACCCCACCCGCGTAAT 60.046 61.111 4.92 0.00 0.00 1.89
54 55 1.676303 CAACCCCACCCGCGTAATT 60.676 57.895 4.92 0.00 0.00 1.40
55 56 1.377594 AACCCCACCCGCGTAATTC 60.378 57.895 4.92 0.00 0.00 2.17
56 57 2.127027 AACCCCACCCGCGTAATTCA 62.127 55.000 4.92 0.00 0.00 2.57
57 58 1.153046 CCCCACCCGCGTAATTCAT 60.153 57.895 4.92 0.00 0.00 2.57
58 59 0.750182 CCCCACCCGCGTAATTCATT 60.750 55.000 4.92 0.00 0.00 2.57
59 60 0.661020 CCCACCCGCGTAATTCATTC 59.339 55.000 4.92 0.00 0.00 2.67
60 61 1.374560 CCACCCGCGTAATTCATTCA 58.625 50.000 4.92 0.00 0.00 2.57
61 62 1.063469 CCACCCGCGTAATTCATTCAC 59.937 52.381 4.92 0.00 0.00 3.18
62 63 1.003851 ACCCGCGTAATTCATTCACG 58.996 50.000 4.92 0.00 38.66 4.35
63 64 1.282817 CCCGCGTAATTCATTCACGA 58.717 50.000 4.92 0.00 37.89 4.35
64 65 1.864711 CCCGCGTAATTCATTCACGAT 59.135 47.619 4.92 0.00 37.89 3.73
65 66 3.054166 CCCGCGTAATTCATTCACGATA 58.946 45.455 4.92 0.00 37.89 2.92
66 67 3.121279 CCCGCGTAATTCATTCACGATAG 59.879 47.826 4.92 0.00 37.89 2.08
86 87 4.280436 AGTAAATGATGAACCGACACCA 57.720 40.909 0.00 0.00 0.00 4.17
91 92 3.248446 ATGAACCGACACCACCCCG 62.248 63.158 0.00 0.00 0.00 5.73
109 110 1.647084 GAACAAAACGCAGACGGCT 59.353 52.632 0.00 0.00 46.04 5.52
117 118 4.126524 GCAGACGGCTGGGATTAC 57.873 61.111 22.33 0.00 42.53 1.89
118 119 1.220749 GCAGACGGCTGGGATTACA 59.779 57.895 22.33 0.00 42.53 2.41
132 135 8.645110 GGCTGGGATTACAGTAATTTACTACTA 58.355 37.037 8.71 0.01 40.59 1.82
178 181 2.767445 GCCCGTAATTTCCACCGCC 61.767 63.158 0.00 0.00 0.00 6.13
179 182 2.466140 CCCGTAATTTCCACCGCCG 61.466 63.158 0.00 0.00 0.00 6.46
180 183 1.448189 CCGTAATTTCCACCGCCGA 60.448 57.895 0.00 0.00 0.00 5.54
181 184 1.020333 CCGTAATTTCCACCGCCGAA 61.020 55.000 0.00 0.00 0.00 4.30
182 185 1.011333 CGTAATTTCCACCGCCGAAT 58.989 50.000 0.00 0.00 0.00 3.34
183 186 2.203401 CGTAATTTCCACCGCCGAATA 58.797 47.619 0.00 0.00 0.00 1.75
184 187 2.033492 CGTAATTTCCACCGCCGAATAC 60.033 50.000 0.00 0.00 0.00 1.89
185 188 2.116827 AATTTCCACCGCCGAATACA 57.883 45.000 0.00 0.00 0.00 2.29
186 189 1.375551 ATTTCCACCGCCGAATACAC 58.624 50.000 0.00 0.00 0.00 2.90
187 190 0.322322 TTTCCACCGCCGAATACACT 59.678 50.000 0.00 0.00 0.00 3.55
188 191 0.322322 TTCCACCGCCGAATACACTT 59.678 50.000 0.00 0.00 0.00 3.16
189 192 0.108520 TCCACCGCCGAATACACTTC 60.109 55.000 0.00 0.00 0.00 3.01
190 193 0.390603 CCACCGCCGAATACACTTCA 60.391 55.000 0.00 0.00 0.00 3.02
191 194 1.434555 CACCGCCGAATACACTTCAA 58.565 50.000 0.00 0.00 0.00 2.69
192 195 2.006888 CACCGCCGAATACACTTCAAT 58.993 47.619 0.00 0.00 0.00 2.57
193 196 2.418628 CACCGCCGAATACACTTCAATT 59.581 45.455 0.00 0.00 0.00 2.32
194 197 2.676342 ACCGCCGAATACACTTCAATTC 59.324 45.455 0.00 0.00 0.00 2.17
195 198 2.031683 CCGCCGAATACACTTCAATTCC 59.968 50.000 0.00 0.00 0.00 3.01
196 199 2.675844 CGCCGAATACACTTCAATTCCA 59.324 45.455 0.00 0.00 0.00 3.53
197 200 3.485216 CGCCGAATACACTTCAATTCCAC 60.485 47.826 0.00 0.00 0.00 4.02
198 201 3.181500 GCCGAATACACTTCAATTCCACC 60.181 47.826 0.00 0.00 0.00 4.61
199 202 3.377172 CCGAATACACTTCAATTCCACCC 59.623 47.826 0.00 0.00 0.00 4.61
200 203 3.063452 CGAATACACTTCAATTCCACCCG 59.937 47.826 0.00 0.00 0.00 5.28
201 204 1.816074 TACACTTCAATTCCACCCGC 58.184 50.000 0.00 0.00 0.00 6.13
202 205 0.179004 ACACTTCAATTCCACCCGCA 60.179 50.000 0.00 0.00 0.00 5.69
203 206 0.958091 CACTTCAATTCCACCCGCAA 59.042 50.000 0.00 0.00 0.00 4.85
204 207 1.339610 CACTTCAATTCCACCCGCAAA 59.660 47.619 0.00 0.00 0.00 3.68
205 208 2.035632 ACTTCAATTCCACCCGCAAAA 58.964 42.857 0.00 0.00 0.00 2.44
206 209 2.432510 ACTTCAATTCCACCCGCAAAAA 59.567 40.909 0.00 0.00 0.00 1.94
295 298 3.896133 GGCGCACGGAGGATACGA 61.896 66.667 10.83 0.00 46.39 3.43
296 299 2.335369 GCGCACGGAGGATACGAT 59.665 61.111 0.30 0.00 46.39 3.73
297 300 1.729838 GCGCACGGAGGATACGATC 60.730 63.158 0.30 0.00 46.39 3.69
311 319 0.107848 ACGATCCGATCCAACCCAAC 60.108 55.000 2.69 0.00 0.00 3.77
316 324 1.248101 CCGATCCAACCCAACCCAAC 61.248 60.000 0.00 0.00 0.00 3.77
611 655 3.760035 CGGTCTCGTGTGGGAGGG 61.760 72.222 0.00 0.00 34.74 4.30
625 669 1.585651 GGAGGGAGGGAGAGTGAGGA 61.586 65.000 0.00 0.00 0.00 3.71
627 671 1.382009 GGGAGGGAGAGTGAGGACC 60.382 68.421 0.00 0.00 0.00 4.46
808 858 2.725008 CGCCTTCTCCTAGCTCCG 59.275 66.667 0.00 0.00 0.00 4.63
809 859 1.824329 CGCCTTCTCCTAGCTCCGA 60.824 63.158 0.00 0.00 0.00 4.55
862 914 1.902938 AGTCAAGCCTTTCTCAAGCC 58.097 50.000 0.00 0.00 0.00 4.35
867 919 0.327591 AGCCTTTCTCAAGCCCAGAG 59.672 55.000 0.00 0.00 34.42 3.35
928 1000 2.109181 GCCTCCGGTGATAGCCAC 59.891 66.667 4.76 0.00 44.95 5.01
936 1008 0.250081 GGTGATAGCCACTAGCCAGC 60.250 60.000 0.00 0.00 45.47 4.85
958 1035 2.095252 GTCTCGGCGAGGAAACAGC 61.095 63.158 33.93 13.33 35.83 4.40
959 1036 3.181967 CTCGGCGAGGAAACAGCG 61.182 66.667 28.52 0.25 37.16 5.18
962 1039 4.388499 GGCGAGGAAACAGCGGGA 62.388 66.667 0.00 0.00 37.16 5.14
1236 1323 1.530655 CACCACCAACTTCCCCCAC 60.531 63.158 0.00 0.00 0.00 4.61
1563 1650 4.700365 TCGGACGAGCTGTGCACG 62.700 66.667 13.13 8.32 46.85 5.34
1584 1671 1.227118 GCTGCGGCTCTTCTAGGAC 60.227 63.158 11.21 0.00 35.22 3.85
1702 1794 4.093115 CAGATGATGTGTGCAAGAGAAGAC 59.907 45.833 0.00 0.00 0.00 3.01
1717 1809 2.233922 AGAAGACCGATTGTACCACCAG 59.766 50.000 0.00 0.00 0.00 4.00
1719 1811 0.036765 GACCGATTGTACCACCAGCA 60.037 55.000 0.00 0.00 0.00 4.41
1720 1812 0.321298 ACCGATTGTACCACCAGCAC 60.321 55.000 0.00 0.00 0.00 4.40
1721 1813 0.036388 CCGATTGTACCACCAGCACT 60.036 55.000 0.00 0.00 0.00 4.40
1831 1945 4.380867 CCACTTGGATGCAACTTTATGGAC 60.381 45.833 0.00 0.00 37.39 4.02
1843 1957 1.006086 TTATGGACATCTTGCGTGCG 58.994 50.000 0.00 0.00 0.00 5.34
1863 1977 2.541556 GAGTGTAACCGGAGAGCATTC 58.458 52.381 9.46 4.19 37.80 2.67
1923 2037 4.852609 ATACGACCGCTGAATTGTTTAC 57.147 40.909 0.00 0.00 0.00 2.01
1925 2039 3.916761 ACGACCGCTGAATTGTTTACTA 58.083 40.909 0.00 0.00 0.00 1.82
1930 2044 4.000988 CCGCTGAATTGTTTACTAGTGGT 58.999 43.478 5.39 0.00 32.62 4.16
1932 2046 4.142902 CGCTGAATTGTTTACTAGTGGTGG 60.143 45.833 5.39 0.00 0.00 4.61
1933 2047 4.156008 GCTGAATTGTTTACTAGTGGTGGG 59.844 45.833 5.39 0.00 0.00 4.61
1934 2048 4.658063 TGAATTGTTTACTAGTGGTGGGG 58.342 43.478 5.39 0.00 0.00 4.96
1935 2049 4.105057 TGAATTGTTTACTAGTGGTGGGGT 59.895 41.667 5.39 0.00 0.00 4.95
1948 2062 2.176798 TGGTGGGGTTTTGAGATGTTCT 59.823 45.455 0.00 0.00 0.00 3.01
1949 2063 3.396276 TGGTGGGGTTTTGAGATGTTCTA 59.604 43.478 0.00 0.00 0.00 2.10
1950 2064 4.010349 GGTGGGGTTTTGAGATGTTCTAG 58.990 47.826 0.00 0.00 0.00 2.43
1951 2065 3.440522 GTGGGGTTTTGAGATGTTCTAGC 59.559 47.826 0.00 0.00 0.00 3.42
1952 2066 3.017442 GGGGTTTTGAGATGTTCTAGCC 58.983 50.000 0.00 0.00 0.00 3.93
1953 2067 3.308473 GGGGTTTTGAGATGTTCTAGCCT 60.308 47.826 0.00 0.00 0.00 4.58
1954 2068 4.336280 GGGTTTTGAGATGTTCTAGCCTT 58.664 43.478 0.00 0.00 0.00 4.35
1955 2069 4.396478 GGGTTTTGAGATGTTCTAGCCTTC 59.604 45.833 0.00 0.00 0.00 3.46
1956 2070 4.093556 GGTTTTGAGATGTTCTAGCCTTCG 59.906 45.833 0.00 0.00 0.00 3.79
1957 2071 2.586258 TGAGATGTTCTAGCCTTCGC 57.414 50.000 0.00 0.00 0.00 4.70
1958 2072 1.137086 TGAGATGTTCTAGCCTTCGCC 59.863 52.381 0.00 0.00 34.57 5.54
1959 2073 0.466124 AGATGTTCTAGCCTTCGCCC 59.534 55.000 0.00 0.00 34.57 6.13
1960 2074 0.876342 GATGTTCTAGCCTTCGCCCG 60.876 60.000 0.00 0.00 34.57 6.13
1961 2075 1.327690 ATGTTCTAGCCTTCGCCCGA 61.328 55.000 0.00 0.00 34.57 5.14
1962 2076 1.227002 GTTCTAGCCTTCGCCCGAG 60.227 63.158 0.00 0.00 34.57 4.63
1963 2077 1.681327 TTCTAGCCTTCGCCCGAGT 60.681 57.895 0.00 0.00 34.57 4.18
1964 2078 1.945354 TTCTAGCCTTCGCCCGAGTG 61.945 60.000 0.00 0.00 34.57 3.51
1965 2079 3.432051 CTAGCCTTCGCCCGAGTGG 62.432 68.421 7.22 7.22 34.57 4.00
1967 2081 4.699522 GCCTTCGCCCGAGTGGTT 62.700 66.667 11.41 0.00 36.04 3.67
1974 2107 1.635663 CGCCCGAGTGGTTCATTCAC 61.636 60.000 0.00 0.00 36.04 3.18
1975 2108 1.305930 GCCCGAGTGGTTCATTCACC 61.306 60.000 0.00 0.00 35.87 4.02
2006 2139 2.333462 CCTCCCTCCCTCCCTGGTA 61.333 68.421 0.00 0.00 0.00 3.25
2017 2150 3.370953 CCCTCCCTGGTATTTCTTCTGTG 60.371 52.174 0.00 0.00 0.00 3.66
2018 2151 3.264450 CCTCCCTGGTATTTCTTCTGTGT 59.736 47.826 0.00 0.00 0.00 3.72
2022 2155 7.147549 CCTCCCTGGTATTTCTTCTGTGTTATA 60.148 40.741 0.00 0.00 0.00 0.98
2052 2192 4.761739 TGCAGGGTTTTCTTCTGTATTCAG 59.238 41.667 0.00 0.00 42.54 3.02
2065 2205 4.403752 TCTGTATTCAGACTGGACTGATGG 59.596 45.833 1.81 0.00 44.58 3.51
2067 2207 4.532126 TGTATTCAGACTGGACTGATGGTT 59.468 41.667 1.81 0.00 44.67 3.67
2068 2208 3.685139 TTCAGACTGGACTGATGGTTC 57.315 47.619 1.81 0.00 44.67 3.62
2069 2209 1.902508 TCAGACTGGACTGATGGTTCC 59.097 52.381 1.81 0.00 41.21 3.62
2072 2212 2.183679 GACTGGACTGATGGTTCCTCT 58.816 52.381 0.00 0.00 0.00 3.69
2074 2214 2.982488 ACTGGACTGATGGTTCCTCTTT 59.018 45.455 0.00 0.00 0.00 2.52
2099 2239 1.961277 AACACTGCACTGCTACGGC 60.961 57.895 1.98 0.00 39.26 5.68
2118 2258 4.340381 ACGGCCAGTAACGAGATTAATACT 59.660 41.667 2.24 0.00 0.00 2.12
2154 2294 6.097839 CCAATTTGAAGAAGATGGTGGATCAT 59.902 38.462 0.00 0.00 32.86 2.45
2169 2309 3.157087 GGATCATGTTCTGGGTTTGTGT 58.843 45.455 3.86 0.00 0.00 3.72
2173 2313 4.019858 TCATGTTCTGGGTTTGTGTTTCA 58.980 39.130 0.00 0.00 0.00 2.69
2175 2315 5.830457 TCATGTTCTGGGTTTGTGTTTCATA 59.170 36.000 0.00 0.00 0.00 2.15
2184 2324 7.432869 TGGGTTTGTGTTTCATAGATTTTGAG 58.567 34.615 0.00 0.00 0.00 3.02
2190 2330 8.463930 TGTGTTTCATAGATTTTGAGGAGTTT 57.536 30.769 0.00 0.00 0.00 2.66
2191 2331 8.567948 TGTGTTTCATAGATTTTGAGGAGTTTC 58.432 33.333 0.00 0.00 0.00 2.78
2213 2358 1.070914 TGGCGTGTTCTAACATGTGGA 59.929 47.619 14.70 0.00 45.44 4.02
2217 2362 3.181520 GCGTGTTCTAACATGTGGATGAC 60.182 47.826 14.70 0.00 45.44 3.06
2227 2372 3.070015 ACATGTGGATGACATATCAGCGA 59.930 43.478 0.00 0.00 43.96 4.93
2232 2377 4.861462 GTGGATGACATATCAGCGATGTAG 59.139 45.833 0.00 0.00 42.46 2.74
2233 2378 3.862267 GGATGACATATCAGCGATGTAGC 59.138 47.826 0.00 0.00 42.46 3.58
2234 2379 3.303881 TGACATATCAGCGATGTAGCC 57.696 47.619 0.00 0.00 37.65 3.93
2252 2397 4.415332 GCGTCGAGCTCGGGTGAA 62.415 66.667 33.98 13.46 44.04 3.18
2265 2410 3.292460 TCGGGTGAAAAGGTGATTTGTT 58.708 40.909 0.00 0.00 0.00 2.83
2266 2411 3.702045 TCGGGTGAAAAGGTGATTTGTTT 59.298 39.130 0.00 0.00 0.00 2.83
2294 2440 1.275010 TCGTTGATGCTGCTCTGGTTA 59.725 47.619 0.00 0.00 0.00 2.85
2312 2458 3.050619 GTTATGCCGGAGTTAGATGACG 58.949 50.000 5.05 0.00 0.00 4.35
2320 2466 3.551890 CGGAGTTAGATGACGAATGTTGG 59.448 47.826 0.00 0.00 0.00 3.77
2346 2492 7.325579 GTGACAAGCTCAAAAGATTCTTCATTC 59.674 37.037 0.00 0.00 28.11 2.67
2378 2524 9.675464 TTCTTTCTTGACTAGTGTTTCCTTTTA 57.325 29.630 0.00 0.00 0.00 1.52
2395 2541 8.836268 TTCCTTTTATAAAGTCAAGCGTTCTA 57.164 30.769 0.00 0.00 0.00 2.10
2409 2555 8.493547 GTCAAGCGTTCTACTATTTTTACAGTT 58.506 33.333 0.00 0.00 0.00 3.16
2412 2558 9.659830 AAGCGTTCTACTATTTTTACAGTTTTG 57.340 29.630 0.00 0.00 0.00 2.44
2413 2559 8.833493 AGCGTTCTACTATTTTTACAGTTTTGT 58.167 29.630 0.00 0.00 41.39 2.83
2414 2560 9.099820 GCGTTCTACTATTTTTACAGTTTTGTC 57.900 33.333 0.00 0.00 38.76 3.18
2418 2564 9.841295 TCTACTATTTTTACAGTTTTGTCAGGT 57.159 29.630 0.00 0.00 38.76 4.00
2433 2579 9.959749 GTTTTGTCAGGTCAATATTTACTTGAA 57.040 29.630 14.14 5.05 34.06 2.69
2520 2693 2.045280 TGGCCCACCAATTTGAACG 58.955 52.632 0.00 0.00 45.37 3.95
2539 2712 7.499438 TGAACGCCGTTTGAAATAAATATTG 57.501 32.000 3.07 0.00 0.00 1.90
2542 2715 5.741982 ACGCCGTTTGAAATAAATATTGCTC 59.258 36.000 0.00 0.00 0.00 4.26
2546 2719 7.469456 GCCGTTTGAAATAAATATTGCTCCCTA 60.469 37.037 0.00 0.00 0.00 3.53
2565 2738 6.342906 TCCCTACAAACCACATTACTTATCG 58.657 40.000 0.00 0.00 0.00 2.92
2576 2749 8.418662 ACCACATTACTTATCGCTGATTTAGTA 58.581 33.333 0.00 3.83 0.00 1.82
2581 2754 9.843334 ATTACTTATCGCTGATTTAGTAGTAGC 57.157 33.333 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.817634 TTCCTTGTTCCACTGTGGCG 60.818 55.000 22.02 7.32 37.47 5.69
1 2 0.668535 GTTCCTTGTTCCACTGTGGC 59.331 55.000 22.02 9.61 37.47 5.01
2 3 1.949525 CTGTTCCTTGTTCCACTGTGG 59.050 52.381 20.86 20.86 39.43 4.17
3 4 2.874701 CTCTGTTCCTTGTTCCACTGTG 59.125 50.000 0.00 0.00 0.00 3.66
4 5 2.746472 GCTCTGTTCCTTGTTCCACTGT 60.746 50.000 0.00 0.00 0.00 3.55
5 6 1.876156 GCTCTGTTCCTTGTTCCACTG 59.124 52.381 0.00 0.00 0.00 3.66
6 7 1.202818 GGCTCTGTTCCTTGTTCCACT 60.203 52.381 0.00 0.00 0.00 4.00
7 8 1.202818 AGGCTCTGTTCCTTGTTCCAC 60.203 52.381 0.00 0.00 0.00 4.02
8 9 1.072331 GAGGCTCTGTTCCTTGTTCCA 59.928 52.381 7.40 0.00 33.24 3.53
9 10 1.349357 AGAGGCTCTGTTCCTTGTTCC 59.651 52.381 17.96 0.00 33.24 3.62
10 11 2.849294 AGAGGCTCTGTTCCTTGTTC 57.151 50.000 17.96 0.00 33.24 3.18
11 12 2.569404 CCTAGAGGCTCTGTTCCTTGTT 59.431 50.000 26.95 0.00 33.24 2.83
12 13 2.183679 CCTAGAGGCTCTGTTCCTTGT 58.816 52.381 26.95 0.00 33.24 3.16
13 14 2.977772 CCTAGAGGCTCTGTTCCTTG 57.022 55.000 26.95 7.74 33.24 3.61
25 26 1.923395 TGGGGTTGTGGCCTAGAGG 60.923 63.158 3.32 0.00 38.53 3.69
26 27 1.299976 GTGGGGTTGTGGCCTAGAG 59.700 63.158 3.32 0.00 0.00 2.43
27 28 2.228480 GGTGGGGTTGTGGCCTAGA 61.228 63.158 3.32 0.00 0.00 2.43
28 29 2.355115 GGTGGGGTTGTGGCCTAG 59.645 66.667 3.32 0.00 0.00 3.02
29 30 3.261677 GGGTGGGGTTGTGGCCTA 61.262 66.667 3.32 0.00 0.00 3.93
34 35 3.828694 TTACGCGGGTGGGGTTGTG 62.829 63.158 16.34 0.00 42.50 3.33
35 36 2.414658 AATTACGCGGGTGGGGTTGT 62.415 55.000 16.34 0.00 42.50 3.32
36 37 1.650314 GAATTACGCGGGTGGGGTTG 61.650 60.000 16.34 0.00 42.50 3.77
37 38 1.377594 GAATTACGCGGGTGGGGTT 60.378 57.895 16.34 4.48 42.50 4.11
38 39 1.917336 ATGAATTACGCGGGTGGGGT 61.917 55.000 16.34 0.00 44.91 4.95
39 40 0.750182 AATGAATTACGCGGGTGGGG 60.750 55.000 16.34 0.00 0.00 4.96
40 41 0.661020 GAATGAATTACGCGGGTGGG 59.339 55.000 16.34 0.00 0.00 4.61
41 42 1.063469 GTGAATGAATTACGCGGGTGG 59.937 52.381 16.34 0.00 0.00 4.61
42 43 1.267334 CGTGAATGAATTACGCGGGTG 60.267 52.381 16.34 0.00 34.60 4.61
43 44 1.003851 CGTGAATGAATTACGCGGGT 58.996 50.000 12.47 10.91 34.60 5.28
44 45 1.282817 TCGTGAATGAATTACGCGGG 58.717 50.000 12.47 0.00 37.70 6.13
45 46 3.734231 ACTATCGTGAATGAATTACGCGG 59.266 43.478 12.47 0.00 37.70 6.46
46 47 4.948864 ACTATCGTGAATGAATTACGCG 57.051 40.909 3.53 3.53 37.70 6.01
47 48 8.484799 TCATTTACTATCGTGAATGAATTACGC 58.515 33.333 13.18 0.00 46.62 4.42
55 56 7.169140 TCGGTTCATCATTTACTATCGTGAATG 59.831 37.037 8.16 8.16 44.19 2.67
56 57 7.169308 GTCGGTTCATCATTTACTATCGTGAAT 59.831 37.037 0.00 0.00 30.32 2.57
57 58 6.474427 GTCGGTTCATCATTTACTATCGTGAA 59.526 38.462 0.00 0.00 0.00 3.18
58 59 5.975344 GTCGGTTCATCATTTACTATCGTGA 59.025 40.000 0.00 0.00 0.00 4.35
59 60 5.746721 TGTCGGTTCATCATTTACTATCGTG 59.253 40.000 0.00 0.00 0.00 4.35
60 61 5.747197 GTGTCGGTTCATCATTTACTATCGT 59.253 40.000 0.00 0.00 0.00 3.73
61 62 5.175126 GGTGTCGGTTCATCATTTACTATCG 59.825 44.000 0.00 0.00 0.00 2.92
62 63 6.018994 GTGGTGTCGGTTCATCATTTACTATC 60.019 42.308 0.00 0.00 30.93 2.08
63 64 5.815740 GTGGTGTCGGTTCATCATTTACTAT 59.184 40.000 0.00 0.00 30.93 2.12
64 65 5.172934 GTGGTGTCGGTTCATCATTTACTA 58.827 41.667 0.00 0.00 30.93 1.82
65 66 4.000988 GTGGTGTCGGTTCATCATTTACT 58.999 43.478 0.00 0.00 30.93 2.24
66 67 3.126343 GGTGGTGTCGGTTCATCATTTAC 59.874 47.826 0.00 0.00 30.93 2.01
67 68 3.340034 GGTGGTGTCGGTTCATCATTTA 58.660 45.455 0.00 0.00 30.93 1.40
68 69 2.159382 GGTGGTGTCGGTTCATCATTT 58.841 47.619 0.00 0.00 30.93 2.32
69 70 1.613255 GGGTGGTGTCGGTTCATCATT 60.613 52.381 0.00 0.00 30.93 2.57
70 71 0.035439 GGGTGGTGTCGGTTCATCAT 60.035 55.000 0.00 0.00 30.93 2.45
71 72 1.373435 GGGTGGTGTCGGTTCATCA 59.627 57.895 0.00 0.00 0.00 3.07
72 73 1.376812 GGGGTGGTGTCGGTTCATC 60.377 63.158 0.00 0.00 0.00 2.92
73 74 2.754375 GGGGTGGTGTCGGTTCAT 59.246 61.111 0.00 0.00 0.00 2.57
74 75 3.931247 CGGGGTGGTGTCGGTTCA 61.931 66.667 0.00 0.00 0.00 3.18
75 76 3.167822 TTCGGGGTGGTGTCGGTTC 62.168 63.158 0.00 0.00 0.00 3.62
76 77 3.162858 TTCGGGGTGGTGTCGGTT 61.163 61.111 0.00 0.00 0.00 4.44
77 78 3.932483 GTTCGGGGTGGTGTCGGT 61.932 66.667 0.00 0.00 0.00 4.69
78 79 2.944409 TTTGTTCGGGGTGGTGTCGG 62.944 60.000 0.00 0.00 0.00 4.79
79 80 1.096386 TTTTGTTCGGGGTGGTGTCG 61.096 55.000 0.00 0.00 0.00 4.35
80 81 0.382873 GTTTTGTTCGGGGTGGTGTC 59.617 55.000 0.00 0.00 0.00 3.67
81 82 1.378124 CGTTTTGTTCGGGGTGGTGT 61.378 55.000 0.00 0.00 0.00 4.16
82 83 1.357334 CGTTTTGTTCGGGGTGGTG 59.643 57.895 0.00 0.00 0.00 4.17
86 87 1.153127 TCTGCGTTTTGTTCGGGGT 60.153 52.632 0.00 0.00 0.00 4.95
91 92 4.205584 GCCGTCTGCGTTTTGTTC 57.794 55.556 0.00 0.00 36.15 3.18
117 118 8.718102 ATTGCCACAGTAGTAGTAAATTACTG 57.282 34.615 15.34 4.86 46.06 2.74
132 135 3.181487 GCGGAATTCATTATTGCCACAGT 60.181 43.478 7.93 0.00 31.38 3.55
134 137 2.100584 GGCGGAATTCATTATTGCCACA 59.899 45.455 7.93 0.00 40.66 4.17
135 138 2.100584 TGGCGGAATTCATTATTGCCAC 59.899 45.455 7.93 0.00 45.35 5.01
137 140 2.622942 TCTGGCGGAATTCATTATTGCC 59.377 45.455 7.93 10.27 41.33 4.52
178 181 3.063452 CGGGTGGAATTGAAGTGTATTCG 59.937 47.826 0.00 0.00 32.73 3.34
179 182 3.181500 GCGGGTGGAATTGAAGTGTATTC 60.181 47.826 0.00 0.00 0.00 1.75
180 183 2.752903 GCGGGTGGAATTGAAGTGTATT 59.247 45.455 0.00 0.00 0.00 1.89
181 184 2.290641 TGCGGGTGGAATTGAAGTGTAT 60.291 45.455 0.00 0.00 0.00 2.29
182 185 1.072489 TGCGGGTGGAATTGAAGTGTA 59.928 47.619 0.00 0.00 0.00 2.90
183 186 0.179004 TGCGGGTGGAATTGAAGTGT 60.179 50.000 0.00 0.00 0.00 3.55
184 187 0.958091 TTGCGGGTGGAATTGAAGTG 59.042 50.000 0.00 0.00 0.00 3.16
185 188 1.698506 TTTGCGGGTGGAATTGAAGT 58.301 45.000 0.00 0.00 0.00 3.01
186 189 2.810439 TTTTGCGGGTGGAATTGAAG 57.190 45.000 0.00 0.00 0.00 3.02
204 207 7.936584 TGACGGAATTGAAGTGTATTCTTTTT 58.063 30.769 0.00 0.00 32.60 1.94
205 208 7.308589 CCTGACGGAATTGAAGTGTATTCTTTT 60.309 37.037 0.00 0.00 32.60 2.27
206 209 6.149474 CCTGACGGAATTGAAGTGTATTCTTT 59.851 38.462 0.00 0.00 32.60 2.52
207 210 5.643777 CCTGACGGAATTGAAGTGTATTCTT 59.356 40.000 0.00 0.00 32.60 2.52
208 211 5.178797 CCTGACGGAATTGAAGTGTATTCT 58.821 41.667 0.00 0.00 32.60 2.40
294 297 0.465642 GGGTTGGGTTGGATCGGATC 60.466 60.000 9.54 9.54 0.00 3.36
295 298 1.211567 TGGGTTGGGTTGGATCGGAT 61.212 55.000 0.00 0.00 0.00 4.18
296 299 1.427895 TTGGGTTGGGTTGGATCGGA 61.428 55.000 0.00 0.00 0.00 4.55
297 300 1.075836 TTGGGTTGGGTTGGATCGG 59.924 57.895 0.00 0.00 0.00 4.18
298 301 1.248101 GGTTGGGTTGGGTTGGATCG 61.248 60.000 0.00 0.00 0.00 3.69
311 319 2.768045 GGGTAGGGTTGGGTTGGG 59.232 66.667 0.00 0.00 0.00 4.12
316 324 1.695239 GGTAGGGGGTAGGGTTGGG 60.695 68.421 0.00 0.00 0.00 4.12
534 578 3.365969 GCAGGGATAACACGTTTCCTTTG 60.366 47.826 0.00 0.00 0.00 2.77
611 655 1.190643 CTTGGTCCTCACTCTCCCTC 58.809 60.000 0.00 0.00 0.00 4.30
625 669 3.175710 ACCTTCCGCACCCTTGGT 61.176 61.111 0.00 0.00 35.62 3.67
627 671 2.672996 CCACCTTCCGCACCCTTG 60.673 66.667 0.00 0.00 0.00 3.61
668 712 1.479368 GGGAGGGATAGCTCAGCCAG 61.479 65.000 0.00 0.00 32.74 4.85
669 713 1.460305 GGGAGGGATAGCTCAGCCA 60.460 63.158 0.00 0.00 32.74 4.75
670 714 2.578714 CGGGAGGGATAGCTCAGCC 61.579 68.421 0.00 0.00 0.00 4.85
671 715 3.055580 CGGGAGGGATAGCTCAGC 58.944 66.667 0.00 0.00 0.00 4.26
862 914 2.496817 GCGTCTACCCTGCTCTGG 59.503 66.667 0.00 0.00 0.00 3.86
872 924 4.509737 GTCAGGCCGGGCGTCTAC 62.510 72.222 23.81 15.08 0.00 2.59
885 937 4.463879 CTGCCCCGAGCTGGTCAG 62.464 72.222 7.70 0.00 44.23 3.51
928 1000 4.914420 CGAGACGCGGCTGGCTAG 62.914 72.222 25.24 0.40 40.44 3.42
947 1024 2.815647 GCTCCCGCTGTTTCCTCG 60.816 66.667 0.00 0.00 0.00 4.63
959 1036 2.883267 AATCGCTTGAGCCAGCTCCC 62.883 60.000 16.69 4.85 42.09 4.30
961 1038 1.720301 CAATCGCTTGAGCCAGCTC 59.280 57.895 12.78 12.78 43.01 4.09
962 1039 2.404995 GCAATCGCTTGAGCCAGCT 61.405 57.895 2.58 0.00 37.68 4.24
964 1041 2.796651 GGCAATCGCTTGAGCCAG 59.203 61.111 2.58 0.00 46.26 4.85
967 1054 4.543084 GCCGGCAATCGCTTGAGC 62.543 66.667 24.80 0.00 38.60 4.26
1236 1323 2.416432 GGGGAAGGAGACGAGGTCG 61.416 68.421 0.00 0.00 46.33 4.79
1621 1708 6.647212 AAAATTAAAATCGCTAGCTTTGGC 57.353 33.333 13.93 0.00 39.06 4.52
1702 1794 0.036388 AGTGCTGGTGGTACAATCGG 60.036 55.000 0.00 0.00 44.16 4.18
1717 1809 5.505286 TCGCGTAAAGAATAGTAGTAGTGC 58.495 41.667 5.77 0.00 0.00 4.40
1719 1811 9.265901 TCTTATCGCGTAAAGAATAGTAGTAGT 57.734 33.333 18.81 0.00 0.00 2.73
1831 1945 1.067693 TTACACTCGCACGCAAGATG 58.932 50.000 0.00 0.00 43.62 2.90
1843 1957 2.541556 GAATGCTCTCCGGTTACACTC 58.458 52.381 0.00 0.00 0.00 3.51
1923 2037 3.244911 ACATCTCAAAACCCCACCACTAG 60.245 47.826 0.00 0.00 0.00 2.57
1925 2039 1.499007 ACATCTCAAAACCCCACCACT 59.501 47.619 0.00 0.00 0.00 4.00
1930 2044 3.561313 GGCTAGAACATCTCAAAACCCCA 60.561 47.826 0.00 0.00 0.00 4.96
1932 2046 3.956744 AGGCTAGAACATCTCAAAACCC 58.043 45.455 0.00 0.00 0.00 4.11
1933 2047 4.093556 CGAAGGCTAGAACATCTCAAAACC 59.906 45.833 0.00 0.00 0.00 3.27
1934 2048 4.436183 GCGAAGGCTAGAACATCTCAAAAC 60.436 45.833 0.00 0.00 35.83 2.43
1935 2049 3.684788 GCGAAGGCTAGAACATCTCAAAA 59.315 43.478 0.00 0.00 35.83 2.44
1951 2065 2.434359 GAACCACTCGGGCGAAGG 60.434 66.667 0.00 0.00 42.05 3.46
1952 2066 0.673644 AATGAACCACTCGGGCGAAG 60.674 55.000 0.00 0.00 42.05 3.79
1953 2067 0.672401 GAATGAACCACTCGGGCGAA 60.672 55.000 0.00 0.00 42.05 4.70
1954 2068 1.079405 GAATGAACCACTCGGGCGA 60.079 57.895 0.00 0.00 42.05 5.54
1955 2069 1.375396 TGAATGAACCACTCGGGCG 60.375 57.895 0.00 0.00 42.05 6.13
1956 2070 1.305930 GGTGAATGAACCACTCGGGC 61.306 60.000 0.00 0.00 42.05 6.13
1957 2071 0.324943 AGGTGAATGAACCACTCGGG 59.675 55.000 0.24 0.00 43.20 5.14
1958 2072 2.185004 AAGGTGAATGAACCACTCGG 57.815 50.000 0.24 0.00 43.20 4.63
1959 2073 2.484264 GGAAAGGTGAATGAACCACTCG 59.516 50.000 0.24 0.00 43.20 4.18
1960 2074 3.756117 AGGAAAGGTGAATGAACCACTC 58.244 45.455 0.24 0.00 43.20 3.51
1961 2075 3.884037 AGGAAAGGTGAATGAACCACT 57.116 42.857 0.24 0.00 43.20 4.00
1962 2076 4.620982 CAAAGGAAAGGTGAATGAACCAC 58.379 43.478 0.24 0.00 43.20 4.16
1963 2077 3.069443 GCAAAGGAAAGGTGAATGAACCA 59.931 43.478 0.24 0.00 43.20 3.67
1964 2078 3.321968 AGCAAAGGAAAGGTGAATGAACC 59.678 43.478 0.00 0.00 40.85 3.62
1965 2079 4.550422 GAGCAAAGGAAAGGTGAATGAAC 58.450 43.478 0.00 0.00 0.00 3.18
1966 2080 3.573967 GGAGCAAAGGAAAGGTGAATGAA 59.426 43.478 0.00 0.00 0.00 2.57
1967 2081 3.157087 GGAGCAAAGGAAAGGTGAATGA 58.843 45.455 0.00 0.00 0.00 2.57
1974 2107 0.323816 GGGAGGGAGCAAAGGAAAGG 60.324 60.000 0.00 0.00 0.00 3.11
1975 2108 0.701147 AGGGAGGGAGCAAAGGAAAG 59.299 55.000 0.00 0.00 0.00 2.62
2052 2192 2.183679 AGAGGAACCATCAGTCCAGTC 58.816 52.381 0.00 0.00 0.00 3.51
2074 2214 0.459934 GCAGTGCAGTGTTGGCAAAA 60.460 50.000 22.22 0.00 43.91 2.44
2099 2239 7.331193 GCCCATAAGTATTAATCTCGTTACTGG 59.669 40.741 0.00 0.00 32.17 4.00
2118 2258 2.630889 TCAAATTGGTGGGCCCATAA 57.369 45.000 31.45 25.87 44.74 1.90
2154 2294 5.441500 TCTATGAAACACAAACCCAGAACA 58.558 37.500 0.00 0.00 0.00 3.18
2169 2309 8.742777 CCATGAAACTCCTCAAAATCTATGAAA 58.257 33.333 0.00 0.00 0.00 2.69
2173 2313 5.297776 CGCCATGAAACTCCTCAAAATCTAT 59.702 40.000 0.00 0.00 0.00 1.98
2175 2315 3.441572 CGCCATGAAACTCCTCAAAATCT 59.558 43.478 0.00 0.00 0.00 2.40
2184 2324 1.523758 AGAACACGCCATGAAACTCC 58.476 50.000 0.00 0.00 0.00 3.85
2190 2330 2.741517 CACATGTTAGAACACGCCATGA 59.258 45.455 0.00 0.00 42.51 3.07
2191 2331 2.159531 CCACATGTTAGAACACGCCATG 60.160 50.000 0.00 0.00 42.51 3.66
2213 2358 3.674410 CGGCTACATCGCTGATATGTCAT 60.674 47.826 0.00 0.00 38.49 3.06
2227 2372 3.471244 GAGCTCGACGCGGCTACAT 62.471 63.158 11.76 0.00 45.59 2.29
2276 2421 2.223433 GCATAACCAGAGCAGCATCAAC 60.223 50.000 0.00 0.00 0.00 3.18
2283 2428 0.531532 CTCCGGCATAACCAGAGCAG 60.532 60.000 0.00 0.00 36.16 4.24
2284 2429 1.264749 ACTCCGGCATAACCAGAGCA 61.265 55.000 0.00 0.00 45.70 4.26
2285 2430 0.107654 AACTCCGGCATAACCAGAGC 60.108 55.000 0.00 0.00 45.70 4.09
2294 2440 1.399714 TCGTCATCTAACTCCGGCAT 58.600 50.000 0.00 0.00 0.00 4.40
2307 2453 2.226437 GCTTGTCACCAACATTCGTCAT 59.774 45.455 0.00 0.00 37.82 3.06
2312 2458 3.988379 TTGAGCTTGTCACCAACATTC 57.012 42.857 0.00 0.00 37.82 2.67
2320 2466 6.064846 TGAAGAATCTTTTGAGCTTGTCAC 57.935 37.500 0.00 0.00 33.71 3.67
2366 2512 7.136772 ACGCTTGACTTTATAAAAGGAAACAC 58.863 34.615 0.00 0.00 0.00 3.32
2372 2518 8.252964 AGTAGAACGCTTGACTTTATAAAAGG 57.747 34.615 0.00 0.00 0.00 3.11
2380 2526 9.048446 TGTAAAAATAGTAGAACGCTTGACTTT 57.952 29.630 0.00 0.00 0.00 2.66
2385 2531 9.659830 AAAACTGTAAAAATAGTAGAACGCTTG 57.340 29.630 0.00 0.00 0.00 4.01
2386 2532 9.659830 CAAAACTGTAAAAATAGTAGAACGCTT 57.340 29.630 0.00 0.00 0.00 4.68
2395 2541 8.514330 TGACCTGACAAAACTGTAAAAATAGT 57.486 30.769 0.00 0.00 0.00 2.12
2520 2693 5.462068 GGGAGCAATATTTATTTCAAACGGC 59.538 40.000 0.00 0.00 0.00 5.68
2539 2712 3.951663 AGTAATGTGGTTTGTAGGGAGC 58.048 45.455 0.00 0.00 0.00 4.70
2542 2715 5.007332 GCGATAAGTAATGTGGTTTGTAGGG 59.993 44.000 0.00 0.00 0.00 3.53
2546 2719 5.242434 TCAGCGATAAGTAATGTGGTTTGT 58.758 37.500 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.