Multiple sequence alignment - TraesCS2A01G526500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G526500 chr2A 100.000 3889 0 0 1 3889 746761350 746765238 0.000000e+00 7182.0
1 TraesCS2A01G526500 chr2A 98.148 54 1 0 1599 1652 746762901 746762954 1.150000e-15 95.3
2 TraesCS2A01G526500 chr2A 98.148 54 1 0 1552 1605 746762948 746763001 1.150000e-15 95.3
3 TraesCS2A01G526500 chr2D 96.285 996 29 7 2351 3343 616578536 616579526 0.000000e+00 1628.0
4 TraesCS2A01G526500 chr2D 84.204 1570 108 74 10 1491 616576145 616577662 0.000000e+00 1397.0
5 TraesCS2A01G526500 chr2D 89.388 490 26 8 3423 3889 616579529 616580015 9.300000e-166 593.0
6 TraesCS2A01G526500 chr2D 91.667 348 20 3 1610 1957 616577695 616578033 1.260000e-129 473.0
7 TraesCS2A01G526500 chr2D 84.416 154 14 1 1992 2135 616578191 616578344 4.050000e-30 143.0
8 TraesCS2A01G526500 chr2B 94.857 1011 30 10 2334 3336 751540809 751541805 0.000000e+00 1559.0
9 TraesCS2A01G526500 chr2B 81.339 1688 137 91 10 1605 751538560 751540161 0.000000e+00 1208.0
10 TraesCS2A01G526500 chr2B 87.127 536 44 8 1613 2135 751540122 751540645 5.600000e-163 584.0
11 TraesCS2A01G526500 chr2B 89.513 267 14 5 3624 3889 751542117 751542370 3.750000e-85 326.0
12 TraesCS2A01G526500 chr2B 92.466 146 7 3 3433 3576 751541803 751541946 5.090000e-49 206.0
13 TraesCS2A01G526500 chr2B 85.333 75 11 0 3350 3424 77822568 77822642 1.160000e-10 78.7
14 TraesCS2A01G526500 chr2B 82.759 87 15 0 3350 3436 77866504 77866590 1.160000e-10 78.7
15 TraesCS2A01G526500 chrUn 83.908 87 14 0 3350 3436 240118470 240118556 2.490000e-12 84.2
16 TraesCS2A01G526500 chrUn 83.908 87 14 0 3350 3436 357456965 357457051 2.490000e-12 84.2
17 TraesCS2A01G526500 chrUn 83.908 87 14 0 3350 3436 357459102 357459188 2.490000e-12 84.2
18 TraesCS2A01G526500 chr7B 85.057 87 7 3 3350 3435 579489298 579489217 2.490000e-12 84.2
19 TraesCS2A01G526500 chr6D 80.583 103 16 1 3334 3436 464266282 464266184 4.170000e-10 76.8
20 TraesCS2A01G526500 chr6D 80.000 105 15 5 3763 3862 139381992 139381889 5.390000e-09 73.1
21 TraesCS2A01G526500 chr6D 85.000 60 6 3 3765 3823 89520006 89519949 1.510000e-04 58.4
22 TraesCS2A01G526500 chr6B 82.955 88 10 2 3333 3420 703273030 703272948 1.500000e-09 75.0
23 TraesCS2A01G526500 chr6B 89.091 55 3 3 3771 3823 279066871 279066924 9.020000e-07 65.8
24 TraesCS2A01G526500 chr5A 89.655 58 5 1 3702 3758 311917922 311917865 5.390000e-09 73.1
25 TraesCS2A01G526500 chr1D 83.333 78 10 2 3795 3869 476901995 476901918 6.970000e-08 69.4
26 TraesCS2A01G526500 chr7A 87.097 62 4 4 3765 3823 442965185 442965245 2.510000e-07 67.6
27 TraesCS2A01G526500 chr5D 77.500 120 22 3 3763 3877 506108717 506108836 2.510000e-07 67.6
28 TraesCS2A01G526500 chr4B 79.310 87 14 2 3349 3435 403672104 403672022 1.510000e-04 58.4
29 TraesCS2A01G526500 chr5B 83.871 62 5 4 3763 3821 636821415 636821474 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G526500 chr2A 746761350 746765238 3888 False 2457.533333 7182 98.765333 1 3889 3 chr2A.!!$F1 3888
1 TraesCS2A01G526500 chr2D 616576145 616580015 3870 False 846.800000 1628 89.192000 10 3889 5 chr2D.!!$F1 3879
2 TraesCS2A01G526500 chr2B 751538560 751542370 3810 False 776.600000 1559 89.060400 10 3889 5 chr2B.!!$F3 3879

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 148 0.038744 TCTTCGGTCCTCGGGTTAGT 59.961 55.0 0.0 0.0 39.77 2.24 F
775 835 0.112606 TAGCGGAGGATAGGGTGGAG 59.887 60.0 0.0 0.0 0.00 3.86 F
1514 1671 0.039165 GTGTGGCTTGCTTAACCTGC 60.039 55.0 0.0 0.0 0.00 4.85 F
2262 2605 0.033601 TGCCATGCCCCTCGTTATTT 60.034 50.0 0.0 0.0 0.00 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1495 1652 0.039165 GCAGGTTAAGCAAGCCACAC 60.039 55.0 7.52 0.0 32.36 3.82 R
2071 2372 0.108207 GCCTGATCTCACCCCTCATG 59.892 60.0 0.00 0.0 0.00 3.07 R
2348 2692 0.175531 AACCCACAAGCACAAACAGC 59.824 50.0 0.00 0.0 0.00 4.40 R
3682 4170 0.107017 CGCTCCATGGGTTCCTTGAT 60.107 55.0 13.02 0.0 31.33 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.201732 CCGTTTGATCCGACGATGATT 58.798 47.619 16.65 0.00 41.53 2.57
58 63 0.333312 TTCCTTCCGCCTCTCTCTCT 59.667 55.000 0.00 0.00 0.00 3.10
59 64 0.106918 TCCTTCCGCCTCTCTCTCTC 60.107 60.000 0.00 0.00 0.00 3.20
60 65 0.106719 CCTTCCGCCTCTCTCTCTCT 60.107 60.000 0.00 0.00 0.00 3.10
61 66 1.308998 CTTCCGCCTCTCTCTCTCTC 58.691 60.000 0.00 0.00 0.00 3.20
62 67 0.916086 TTCCGCCTCTCTCTCTCTCT 59.084 55.000 0.00 0.00 0.00 3.10
63 68 0.468226 TCCGCCTCTCTCTCTCTCTC 59.532 60.000 0.00 0.00 0.00 3.20
64 69 0.469917 CCGCCTCTCTCTCTCTCTCT 59.530 60.000 0.00 0.00 0.00 3.10
65 70 1.541233 CCGCCTCTCTCTCTCTCTCTC 60.541 61.905 0.00 0.00 0.00 3.20
66 71 1.414181 CGCCTCTCTCTCTCTCTCTCT 59.586 57.143 0.00 0.00 0.00 3.10
67 72 2.546795 CGCCTCTCTCTCTCTCTCTCTC 60.547 59.091 0.00 0.00 0.00 3.20
68 73 2.435805 GCCTCTCTCTCTCTCTCTCTCA 59.564 54.545 0.00 0.00 0.00 3.27
99 104 2.751436 CCATGCACCGGGTCCTTG 60.751 66.667 6.32 0.00 0.00 3.61
105 110 0.322187 GCACCGGGTCCTTGTACAAT 60.322 55.000 9.13 0.00 0.00 2.71
113 118 1.066430 GTCCTTGTACAATCCAGCGGA 60.066 52.381 9.13 8.28 35.55 5.54
143 148 0.038744 TCTTCGGTCCTCGGGTTAGT 59.961 55.000 0.00 0.00 39.77 2.24
224 229 2.524394 TGCCCGCTCCTCTATCCC 60.524 66.667 0.00 0.00 0.00 3.85
225 230 2.203714 GCCCGCTCCTCTATCCCT 60.204 66.667 0.00 0.00 0.00 4.20
254 265 2.102925 CCAGCATCCTCTTTCTCTCCTC 59.897 54.545 0.00 0.00 0.00 3.71
265 276 2.040464 TCTCCTCCCTCCCATGGC 60.040 66.667 6.09 0.00 0.00 4.40
266 277 3.174265 CTCCTCCCTCCCATGGCC 61.174 72.222 6.09 0.00 0.00 5.36
267 278 4.037413 TCCTCCCTCCCATGGCCA 62.037 66.667 8.56 8.56 0.00 5.36
268 279 2.780040 CCTCCCTCCCATGGCCAT 60.780 66.667 14.09 14.09 0.00 4.40
317 329 2.163509 GAGAGCGCTCATATACCCTCA 58.836 52.381 36.87 0.00 40.96 3.86
318 330 2.163412 GAGAGCGCTCATATACCCTCAG 59.837 54.545 36.87 0.00 40.96 3.35
319 331 2.163509 GAGCGCTCATATACCCTCAGA 58.836 52.381 31.91 0.00 0.00 3.27
320 332 2.163412 GAGCGCTCATATACCCTCAGAG 59.837 54.545 31.91 0.00 0.00 3.35
321 333 2.163509 GCGCTCATATACCCTCAGAGA 58.836 52.381 0.00 0.00 0.00 3.10
322 334 2.094957 GCGCTCATATACCCTCAGAGAC 60.095 54.545 0.00 0.00 0.00 3.36
323 335 2.160615 CGCTCATATACCCTCAGAGACG 59.839 54.545 0.00 0.00 0.00 4.18
356 368 3.821600 TCTGTGGTCTGTTGTAGTCTCTC 59.178 47.826 0.00 0.00 0.00 3.20
357 369 3.823873 CTGTGGTCTGTTGTAGTCTCTCT 59.176 47.826 0.00 0.00 0.00 3.10
360 372 2.823154 GGTCTGTTGTAGTCTCTCTGCT 59.177 50.000 0.00 0.00 0.00 4.24
367 379 3.767711 TGTAGTCTCTCTGCTTCCTCAA 58.232 45.455 0.00 0.00 0.00 3.02
373 385 4.213059 GTCTCTCTGCTTCCTCAAAACAAG 59.787 45.833 0.00 0.00 0.00 3.16
374 386 3.480470 TCTCTGCTTCCTCAAAACAAGG 58.520 45.455 0.00 0.00 35.05 3.61
384 403 4.410883 TCCTCAAAACAAGGTAACCTCTCA 59.589 41.667 0.00 0.00 35.29 3.27
391 410 7.506328 AAACAAGGTAACCTCTCATGTTTAC 57.494 36.000 0.00 0.00 38.37 2.01
392 411 6.182507 ACAAGGTAACCTCTCATGTTTACA 57.817 37.500 0.00 0.00 30.89 2.41
427 446 3.563808 ACGCATCTCAACTGCTTTTTACA 59.436 39.130 0.00 0.00 37.48 2.41
434 453 3.699038 TCAACTGCTTTTTACACCTGCTT 59.301 39.130 0.00 0.00 0.00 3.91
474 500 7.578310 ATCATATCTTTGTTGTTCATCCTGG 57.422 36.000 0.00 0.00 0.00 4.45
480 506 7.595819 TCTTTGTTGTTCATCCTGGTAATTT 57.404 32.000 0.00 0.00 0.00 1.82
493 519 2.763933 GGTAATTTACCCTAGCCGCTC 58.236 52.381 13.73 0.00 43.18 5.03
531 559 0.534412 TGTTCTAGGCTCTGCTCTGC 59.466 55.000 0.00 0.00 0.00 4.26
532 560 0.823460 GTTCTAGGCTCTGCTCTGCT 59.177 55.000 0.00 0.00 0.00 4.24
533 561 1.110442 TTCTAGGCTCTGCTCTGCTC 58.890 55.000 0.00 0.00 0.00 4.26
534 562 0.258484 TCTAGGCTCTGCTCTGCTCT 59.742 55.000 0.00 0.00 0.00 4.09
535 563 0.386476 CTAGGCTCTGCTCTGCTCTG 59.614 60.000 0.00 0.00 0.00 3.35
571 599 6.235642 CAAATTGTGCTATGAATTCGTTTGC 58.764 36.000 5.29 11.18 0.00 3.68
672 705 7.359014 GCTCTCGTTTTCTGTATACTCGTTTTT 60.359 37.037 4.17 0.00 0.00 1.94
706 741 0.250640 CCTGGCACTTCTGTGAGCTT 60.251 55.000 0.00 0.00 46.55 3.74
707 742 1.602311 CTGGCACTTCTGTGAGCTTT 58.398 50.000 0.00 0.00 46.55 3.51
711 746 2.216898 GCACTTCTGTGAGCTTTCTGT 58.783 47.619 0.00 0.00 46.55 3.41
713 748 3.303659 GCACTTCTGTGAGCTTTCTGTTC 60.304 47.826 0.00 0.00 46.55 3.18
714 749 3.873361 CACTTCTGTGAGCTTTCTGTTCA 59.127 43.478 0.00 0.00 46.55 3.18
723 779 5.295540 GTGAGCTTTCTGTTCAGAGAAAAGT 59.704 40.000 11.72 0.00 40.59 2.66
733 789 6.976088 TGTTCAGAGAAAAGTTGTGTTTTCA 58.024 32.000 10.74 0.00 45.24 2.69
751 807 3.697619 TCACGTCTCTTCTCTGACCTA 57.302 47.619 0.00 0.00 0.00 3.08
775 835 0.112606 TAGCGGAGGATAGGGTGGAG 59.887 60.000 0.00 0.00 0.00 3.86
792 852 4.096532 GGTGGAGTTTTGCTAGAATTAGGC 59.903 45.833 0.00 0.00 0.00 3.93
854 915 4.584327 CCAAACCTTGTTGGGAAAGTAG 57.416 45.455 0.00 0.00 43.79 2.57
894 955 0.609131 TAAGGTTTCCTGCTGCTGCC 60.609 55.000 13.47 0.00 38.71 4.85
896 957 2.338785 GGTTTCCTGCTGCTGCCTC 61.339 63.158 13.47 0.00 38.71 4.70
899 960 3.914579 TTCCTGCTGCTGCCTCTGC 62.915 63.158 13.47 0.00 38.71 4.26
901 962 4.411981 CTGCTGCTGCCTCTGCCT 62.412 66.667 13.47 0.00 38.71 4.75
937 1014 8.041919 GGTAAAAGTAAAGCCTTATCTCTGACT 58.958 37.037 0.00 0.00 0.00 3.41
941 1018 3.791973 AAGCCTTATCTCTGACTGACG 57.208 47.619 0.00 0.00 0.00 4.35
942 1019 2.729194 AGCCTTATCTCTGACTGACGT 58.271 47.619 0.00 0.00 0.00 4.34
1049 1156 4.124351 CGCCGACCTGCTTACCGA 62.124 66.667 0.00 0.00 0.00 4.69
1081 1188 4.814294 GCACCGGCACCGAGGTAG 62.814 72.222 11.42 0.00 42.83 3.18
1102 1229 8.254508 AGGTAGTACAAAAATCACATCTCTCTC 58.745 37.037 2.06 0.00 0.00 3.20
1104 1231 9.081997 GTAGTACAAAAATCACATCTCTCTCTG 57.918 37.037 0.00 0.00 0.00 3.35
1105 1232 7.675062 AGTACAAAAATCACATCTCTCTCTGT 58.325 34.615 0.00 0.00 0.00 3.41
1107 1234 5.636965 ACAAAAATCACATCTCTCTCTGTCG 59.363 40.000 0.00 0.00 0.00 4.35
1112 1239 5.959618 TCACATCTCTCTCTGTCGTTTTA 57.040 39.130 0.00 0.00 0.00 1.52
1115 1242 6.653740 TCACATCTCTCTCTGTCGTTTTACTA 59.346 38.462 0.00 0.00 0.00 1.82
1116 1243 6.743627 CACATCTCTCTCTGTCGTTTTACTAC 59.256 42.308 0.00 0.00 0.00 2.73
1141 1283 7.434897 ACGTACTATTTTCGTGTGTACTTTGAA 59.565 33.333 0.00 0.00 36.46 2.69
1268 1419 3.119291 CGTTGTGAGAGTGAGATATGGC 58.881 50.000 0.00 0.00 0.00 4.40
1314 1465 4.457496 GGTGCGCTCTAGGCTGCA 62.457 66.667 9.73 13.90 43.70 4.41
1329 1480 0.594796 CTGCAGTTTTCGGTTGTGGC 60.595 55.000 5.25 0.00 0.00 5.01
1351 1502 4.265056 AGTTCCGTGTGGGTGGGC 62.265 66.667 0.00 0.00 37.00 5.36
1374 1525 4.479993 CCTCAGCCCGCTCCTTGG 62.480 72.222 0.00 0.00 0.00 3.61
1375 1526 3.710722 CTCAGCCCGCTCCTTGGT 61.711 66.667 0.00 0.00 0.00 3.67
1376 1527 3.672295 CTCAGCCCGCTCCTTGGTC 62.672 68.421 0.00 0.00 0.00 4.02
1377 1528 4.785453 CAGCCCGCTCCTTGGTCC 62.785 72.222 0.00 0.00 0.00 4.46
1379 1530 4.035102 GCCCGCTCCTTGGTCCTT 62.035 66.667 0.00 0.00 0.00 3.36
1468 1625 0.829333 TGCCTTCAGAGATGCTCTCC 59.171 55.000 8.89 0.00 44.42 3.71
1500 1657 3.757745 AAAAACTTCGTCAGTGTGTGG 57.242 42.857 0.00 0.00 35.12 4.17
1501 1658 1.014352 AAACTTCGTCAGTGTGTGGC 58.986 50.000 0.00 0.00 35.12 5.01
1502 1659 0.178068 AACTTCGTCAGTGTGTGGCT 59.822 50.000 0.00 0.00 35.12 4.75
1503 1660 0.178068 ACTTCGTCAGTGTGTGGCTT 59.822 50.000 0.00 0.00 32.83 4.35
1514 1671 0.039165 GTGTGGCTTGCTTAACCTGC 60.039 55.000 0.00 0.00 0.00 4.85
1552 1709 2.972713 AGGTGCTTAGGTCAAGTCAAGA 59.027 45.455 0.00 0.00 36.55 3.02
1601 1761 6.367969 GGTTAATCACTTTCTTAAGCGTGAGA 59.632 38.462 19.51 11.86 39.46 3.27
1602 1762 5.847670 AATCACTTTCTTAAGCGTGAGAC 57.152 39.130 19.51 0.00 39.46 3.36
1603 1763 4.316205 TCACTTTCTTAAGCGTGAGACA 57.684 40.909 14.19 0.00 34.60 3.41
1604 1764 4.299155 TCACTTTCTTAAGCGTGAGACAG 58.701 43.478 14.19 6.14 34.60 3.51
1605 1765 4.051922 CACTTTCTTAAGCGTGAGACAGT 58.948 43.478 7.29 7.29 32.24 3.55
1606 1766 5.009310 TCACTTTCTTAAGCGTGAGACAGTA 59.991 40.000 11.73 1.25 30.78 2.74
1607 1767 5.864474 CACTTTCTTAAGCGTGAGACAGTAT 59.136 40.000 11.73 0.00 30.78 2.12
1608 1768 7.027760 CACTTTCTTAAGCGTGAGACAGTATA 58.972 38.462 11.73 0.00 30.78 1.47
1609 1769 7.219154 CACTTTCTTAAGCGTGAGACAGTATAG 59.781 40.741 11.73 0.00 30.78 1.31
1610 1770 5.171147 TCTTAAGCGTGAGACAGTATAGC 57.829 43.478 0.00 0.00 0.00 2.97
1611 1771 4.638865 TCTTAAGCGTGAGACAGTATAGCA 59.361 41.667 0.00 0.00 0.00 3.49
1612 1772 5.299531 TCTTAAGCGTGAGACAGTATAGCAT 59.700 40.000 0.00 0.00 0.00 3.79
1613 1773 6.485648 TCTTAAGCGTGAGACAGTATAGCATA 59.514 38.462 0.00 0.00 0.00 3.14
1614 1774 5.713792 AAGCGTGAGACAGTATAGCATAT 57.286 39.130 0.00 0.00 0.00 1.78
1615 1775 5.713792 AGCGTGAGACAGTATAGCATATT 57.286 39.130 0.00 0.00 0.00 1.28
1616 1776 6.819397 AGCGTGAGACAGTATAGCATATTA 57.181 37.500 0.00 0.00 0.00 0.98
1617 1777 7.397892 AGCGTGAGACAGTATAGCATATTAT 57.602 36.000 0.00 0.00 0.00 1.28
1618 1778 7.254137 AGCGTGAGACAGTATAGCATATTATG 58.746 38.462 0.00 0.00 0.00 1.90
1642 1802 7.985476 TGCTATGGTTAATCACTTTCTTAAGC 58.015 34.615 0.00 0.00 36.40 3.09
1643 1803 7.126398 GCTATGGTTAATCACTTTCTTAAGCG 58.874 38.462 0.00 0.00 37.87 4.68
1644 1804 7.201617 GCTATGGTTAATCACTTTCTTAAGCGT 60.202 37.037 0.00 0.00 37.87 5.07
1645 1805 6.236017 TGGTTAATCACTTTCTTAAGCGTG 57.764 37.500 0.00 5.45 37.87 5.34
1646 1806 5.992829 TGGTTAATCACTTTCTTAAGCGTGA 59.007 36.000 18.07 18.07 37.87 4.35
1647 1807 6.147164 TGGTTAATCACTTTCTTAAGCGTGAG 59.853 38.462 19.51 9.18 39.46 3.51
1666 1826 0.601311 GACAGGCTGTCTTTGACGCT 60.601 55.000 34.49 3.40 43.73 5.07
1726 1886 1.069978 TCGCCATTGAGAGTGACACAA 59.930 47.619 8.59 0.00 34.06 3.33
1753 1913 7.320399 GGACTTTTCTGTAATTATTTGGGGTG 58.680 38.462 0.00 0.00 0.00 4.61
1790 1951 8.004801 TGACTAGAGATATTTGTGATAGGGTCA 58.995 37.037 0.00 0.00 0.00 4.02
1868 2030 3.004629 TGAGCACCACATGATTTTGTCAC 59.995 43.478 0.00 0.00 40.28 3.67
1871 2033 4.826733 AGCACCACATGATTTTGTCACTTA 59.173 37.500 0.00 0.00 40.28 2.24
1872 2034 5.301551 AGCACCACATGATTTTGTCACTTAA 59.698 36.000 0.00 0.00 40.28 1.85
1888 2050 2.154462 CTTAAGTGCTCCCAACCACAG 58.846 52.381 0.00 0.00 34.48 3.66
1908 2075 3.041211 AGCATGGTCCAGAGTAGCATAA 58.959 45.455 0.00 0.00 33.49 1.90
1909 2076 3.455910 AGCATGGTCCAGAGTAGCATAAA 59.544 43.478 0.00 0.00 33.49 1.40
1910 2077 4.080356 AGCATGGTCCAGAGTAGCATAAAA 60.080 41.667 0.00 0.00 33.49 1.52
1911 2078 4.274459 GCATGGTCCAGAGTAGCATAAAAG 59.726 45.833 0.00 0.00 33.49 2.27
1912 2079 5.431765 CATGGTCCAGAGTAGCATAAAAGT 58.568 41.667 0.00 0.00 33.49 2.66
1913 2080 6.582636 CATGGTCCAGAGTAGCATAAAAGTA 58.417 40.000 0.00 0.00 33.49 2.24
1923 2090 7.711339 AGAGTAGCATAAAAGTACAAGGTATGC 59.289 37.037 16.74 16.74 44.73 3.14
1937 2104 0.165944 GTATGCAACTGCGTGGACAC 59.834 55.000 6.67 0.00 45.83 3.67
1938 2105 0.250081 TATGCAACTGCGTGGACACA 60.250 50.000 6.67 0.00 45.83 3.72
1941 2108 1.506309 GCAACTGCGTGGACACATGA 61.506 55.000 0.00 0.00 35.58 3.07
1946 2113 1.536766 CTGCGTGGACACATGATTGTT 59.463 47.619 0.00 0.00 35.58 2.83
1957 2124 4.158394 ACACATGATTGTTGTTATGGAGGC 59.842 41.667 0.00 0.00 32.34 4.70
1958 2125 4.400251 CACATGATTGTTGTTATGGAGGCT 59.600 41.667 0.00 0.00 32.34 4.58
1960 2127 4.032960 TGATTGTTGTTATGGAGGCTGT 57.967 40.909 0.00 0.00 0.00 4.40
1961 2128 5.172687 TGATTGTTGTTATGGAGGCTGTA 57.827 39.130 0.00 0.00 0.00 2.74
1962 2129 5.565509 TGATTGTTGTTATGGAGGCTGTAA 58.434 37.500 0.00 0.00 0.00 2.41
1963 2130 6.186957 TGATTGTTGTTATGGAGGCTGTAAT 58.813 36.000 0.00 0.00 0.00 1.89
1964 2131 7.342581 TGATTGTTGTTATGGAGGCTGTAATA 58.657 34.615 0.00 0.00 0.00 0.98
1965 2132 7.998383 TGATTGTTGTTATGGAGGCTGTAATAT 59.002 33.333 0.00 0.00 0.00 1.28
1966 2133 8.766994 ATTGTTGTTATGGAGGCTGTAATATT 57.233 30.769 0.00 0.00 0.00 1.28
1967 2134 7.801716 TGTTGTTATGGAGGCTGTAATATTC 57.198 36.000 0.00 0.00 0.00 1.75
1968 2135 6.770785 TGTTGTTATGGAGGCTGTAATATTCC 59.229 38.462 0.00 0.00 0.00 3.01
1978 2210 5.829924 AGGCTGTAATATTCCATCTTTGTGG 59.170 40.000 0.00 0.00 40.76 4.17
1997 2296 4.937620 TGTGGCACTCTGAAATAGATTCAC 59.062 41.667 19.83 0.00 43.08 3.18
2002 2301 6.183360 GGCACTCTGAAATAGATTCACAAGAC 60.183 42.308 0.00 0.00 43.08 3.01
2004 2303 7.412781 GCACTCTGAAATAGATTCACAAGACAG 60.413 40.741 0.00 0.00 43.08 3.51
2092 2403 0.252881 TGAGGGGTGAGATCAGGCTT 60.253 55.000 0.00 0.00 0.00 4.35
2096 2407 0.615331 GGGTGAGATCAGGCTTCACA 59.385 55.000 16.49 1.37 33.41 3.58
2126 2437 1.644509 TTCAGCTGGTCTGCTCCTTA 58.355 50.000 15.13 0.00 41.98 2.69
2127 2438 1.644509 TCAGCTGGTCTGCTCCTTAA 58.355 50.000 15.13 0.00 41.98 1.85
2153 2492 2.016905 AGCAGCCGGTTCTAGGATAT 57.983 50.000 1.90 0.00 0.00 1.63
2159 2498 3.057734 GCCGGTTCTAGGATATCAAACG 58.942 50.000 1.90 4.60 0.00 3.60
2179 2518 2.352323 CGGGGTTGTTGTTTATTGAGCC 60.352 50.000 0.00 0.00 0.00 4.70
2180 2519 2.352323 GGGGTTGTTGTTTATTGAGCCG 60.352 50.000 0.00 0.00 0.00 5.52
2194 2533 1.526917 AGCCGTGCTCTTGTTGCTT 60.527 52.632 0.00 0.00 30.62 3.91
2211 2550 9.481340 CTTGTTGCTTACTAATATGAGATGCTA 57.519 33.333 0.00 0.00 0.00 3.49
2244 2587 7.705325 CCATTAAGAAAAAGGAATGATCTGCTG 59.295 37.037 0.00 0.00 32.16 4.41
2255 2598 3.432445 ATCTGCTGCCATGCCCCTC 62.432 63.158 0.00 0.00 0.00 4.30
2262 2605 0.033601 TGCCATGCCCCTCGTTATTT 60.034 50.000 0.00 0.00 0.00 1.40
2275 2618 5.220796 CCCTCGTTATTTACTAGCTTTTGGC 60.221 44.000 0.00 0.00 42.19 4.52
2282 2625 8.517056 GTTATTTACTAGCTTTTGGCCACTTTA 58.483 33.333 3.88 0.00 43.05 1.85
2283 2626 5.952526 TTACTAGCTTTTGGCCACTTTAC 57.047 39.130 3.88 0.00 43.05 2.01
2320 2664 3.258372 TGTGTTGTGCTTGTGGGTTTTTA 59.742 39.130 0.00 0.00 0.00 1.52
2323 2667 3.172229 TGTGCTTGTGGGTTTTTAAGC 57.828 42.857 0.00 0.00 44.26 3.09
2327 2671 4.033932 GTGCTTGTGGGTTTTTAAGCTTTG 59.966 41.667 3.20 0.00 44.30 2.77
2328 2672 4.188462 GCTTGTGGGTTTTTAAGCTTTGT 58.812 39.130 3.20 0.00 41.60 2.83
2330 2674 5.123186 GCTTGTGGGTTTTTAAGCTTTGTTT 59.877 36.000 3.20 0.00 41.60 2.83
2331 2675 6.674519 GCTTGTGGGTTTTTAAGCTTTGTTTC 60.675 38.462 3.20 0.00 41.60 2.78
2332 2676 5.794894 TGTGGGTTTTTAAGCTTTGTTTCA 58.205 33.333 3.20 0.00 0.00 2.69
2333 2677 6.231211 TGTGGGTTTTTAAGCTTTGTTTCAA 58.769 32.000 3.20 0.00 0.00 2.69
2334 2678 6.370166 TGTGGGTTTTTAAGCTTTGTTTCAAG 59.630 34.615 3.20 0.00 0.00 3.02
2335 2679 5.352846 TGGGTTTTTAAGCTTTGTTTCAAGC 59.647 36.000 3.20 0.00 42.10 4.01
2343 2687 3.785486 GCTTTGTTTCAAGCTTTGGTCT 58.215 40.909 0.00 0.00 38.89 3.85
2344 2688 3.553105 GCTTTGTTTCAAGCTTTGGTCTG 59.447 43.478 0.00 0.00 38.89 3.51
2345 2689 3.799281 TTGTTTCAAGCTTTGGTCTGG 57.201 42.857 0.00 0.00 0.00 3.86
2346 2690 3.011566 TGTTTCAAGCTTTGGTCTGGA 57.988 42.857 0.00 0.00 0.00 3.86
2347 2691 3.565307 TGTTTCAAGCTTTGGTCTGGAT 58.435 40.909 0.00 0.00 0.00 3.41
2348 2692 3.318839 TGTTTCAAGCTTTGGTCTGGATG 59.681 43.478 0.00 0.00 0.00 3.51
2349 2693 1.538047 TCAAGCTTTGGTCTGGATGC 58.462 50.000 0.00 0.00 0.00 3.91
2350 2694 1.074405 TCAAGCTTTGGTCTGGATGCT 59.926 47.619 0.00 0.00 0.00 3.79
2351 2695 1.201647 CAAGCTTTGGTCTGGATGCTG 59.798 52.381 0.00 0.00 0.00 4.41
2352 2696 0.403271 AGCTTTGGTCTGGATGCTGT 59.597 50.000 0.00 0.00 0.00 4.40
2353 2697 1.202976 AGCTTTGGTCTGGATGCTGTT 60.203 47.619 0.00 0.00 0.00 3.16
2354 2698 1.615392 GCTTTGGTCTGGATGCTGTTT 59.385 47.619 0.00 0.00 0.00 2.83
2355 2699 2.608752 GCTTTGGTCTGGATGCTGTTTG 60.609 50.000 0.00 0.00 0.00 2.93
2356 2700 2.363306 TTGGTCTGGATGCTGTTTGT 57.637 45.000 0.00 0.00 0.00 2.83
2357 2701 1.608055 TGGTCTGGATGCTGTTTGTG 58.392 50.000 0.00 0.00 0.00 3.33
2358 2702 0.242017 GGTCTGGATGCTGTTTGTGC 59.758 55.000 0.00 0.00 0.00 4.57
2359 2703 1.242076 GTCTGGATGCTGTTTGTGCT 58.758 50.000 0.00 0.00 0.00 4.40
2360 2704 1.610522 GTCTGGATGCTGTTTGTGCTT 59.389 47.619 0.00 0.00 0.00 3.91
2361 2705 1.610038 TCTGGATGCTGTTTGTGCTTG 59.390 47.619 0.00 0.00 0.00 4.01
2362 2706 1.338973 CTGGATGCTGTTTGTGCTTGT 59.661 47.619 0.00 0.00 0.00 3.16
2363 2707 1.067364 TGGATGCTGTTTGTGCTTGTG 59.933 47.619 0.00 0.00 0.00 3.33
2364 2708 1.603678 GGATGCTGTTTGTGCTTGTGG 60.604 52.381 0.00 0.00 0.00 4.17
2394 2738 4.329801 CAGTTTTGTTTCAAGCTTTGGTCC 59.670 41.667 0.00 0.00 0.00 4.46
2400 2744 0.960364 TCAAGCTTTGGTCCGGATGC 60.960 55.000 7.81 7.82 0.00 3.91
2405 2749 0.609131 CTTTGGTCCGGATGCTGGTT 60.609 55.000 7.81 0.00 0.00 3.67
2408 2752 0.178975 TGGTCCGGATGCTGGTTTTT 60.179 50.000 7.81 0.00 0.00 1.94
2433 2777 5.880332 TGACTTAACTATGTTTGCCTGATCC 59.120 40.000 0.00 0.00 0.00 3.36
2456 2800 2.757868 TGTACAGGGCATTATTTGTGGC 59.242 45.455 0.00 0.00 41.02 5.01
2693 3037 2.614229 GGAAGAACAAGAGGAGCAGGAC 60.614 54.545 0.00 0.00 0.00 3.85
2723 3067 2.625314 AGGTGACGACGATGATGATGAT 59.375 45.455 0.00 0.00 0.00 2.45
2732 3079 3.057946 ACGATGATGATGATGACGACGAT 60.058 43.478 0.00 0.00 0.00 3.73
2765 3112 0.247576 ACGACGACGATGATGACGAC 60.248 55.000 15.32 0.00 42.66 4.34
2846 3193 1.883275 GACGATGATGAGGAGGACGAT 59.117 52.381 0.00 0.00 0.00 3.73
2878 3225 1.537889 TCCAGCCCCCGAAGAAGAA 60.538 57.895 0.00 0.00 0.00 2.52
2922 3269 1.167851 GCTGCTTTAGTCACCATGCA 58.832 50.000 0.00 0.00 0.00 3.96
3302 3652 4.871513 TGATGGTGACTAGATGATTACGC 58.128 43.478 0.00 0.00 0.00 4.42
3337 3687 8.804204 AGATATATGGCTTGTTAGTGTAGTACC 58.196 37.037 0.00 0.00 0.00 3.34
3343 3693 4.351127 CTTGTTAGTGTAGTACCCCCTCT 58.649 47.826 0.00 0.00 0.00 3.69
3344 3694 3.705051 TGTTAGTGTAGTACCCCCTCTG 58.295 50.000 0.00 0.00 0.00 3.35
3345 3695 3.076484 TGTTAGTGTAGTACCCCCTCTGT 59.924 47.826 0.00 0.00 0.00 3.41
3346 3696 4.092279 GTTAGTGTAGTACCCCCTCTGTT 58.908 47.826 0.00 0.00 0.00 3.16
3347 3697 3.271153 AGTGTAGTACCCCCTCTGTTT 57.729 47.619 0.00 0.00 0.00 2.83
3348 3698 3.595021 AGTGTAGTACCCCCTCTGTTTT 58.405 45.455 0.00 0.00 0.00 2.43
3349 3699 4.755437 AGTGTAGTACCCCCTCTGTTTTA 58.245 43.478 0.00 0.00 0.00 1.52
3350 3700 5.157395 AGTGTAGTACCCCCTCTGTTTTAA 58.843 41.667 0.00 0.00 0.00 1.52
3351 3701 5.608015 AGTGTAGTACCCCCTCTGTTTTAAA 59.392 40.000 0.00 0.00 0.00 1.52
3352 3702 6.101588 AGTGTAGTACCCCCTCTGTTTTAAAA 59.898 38.462 0.00 0.00 0.00 1.52
3353 3703 6.944290 GTGTAGTACCCCCTCTGTTTTAAAAT 59.056 38.462 3.52 0.00 0.00 1.82
3354 3704 8.102676 GTGTAGTACCCCCTCTGTTTTAAAATA 58.897 37.037 3.52 0.13 0.00 1.40
3355 3705 8.667737 TGTAGTACCCCCTCTGTTTTAAAATAA 58.332 33.333 3.52 0.00 0.00 1.40
3356 3706 9.690913 GTAGTACCCCCTCTGTTTTAAAATAAT 57.309 33.333 3.52 0.00 0.00 1.28
3358 3708 9.031537 AGTACCCCCTCTGTTTTAAAATAATTG 57.968 33.333 3.52 0.00 0.00 2.32
3359 3709 7.865530 ACCCCCTCTGTTTTAAAATAATTGT 57.134 32.000 3.52 0.00 0.00 2.71
3360 3710 7.903145 ACCCCCTCTGTTTTAAAATAATTGTC 58.097 34.615 3.52 0.00 0.00 3.18
3361 3711 7.733047 ACCCCCTCTGTTTTAAAATAATTGTCT 59.267 33.333 3.52 0.00 0.00 3.41
3362 3712 8.251026 CCCCCTCTGTTTTAAAATAATTGTCTC 58.749 37.037 3.52 0.00 0.00 3.36
3363 3713 8.802267 CCCCTCTGTTTTAAAATAATTGTCTCA 58.198 33.333 3.52 0.00 0.00 3.27
3428 3778 7.929785 AGTTCTGACACTTATTTTAAGACGGAA 59.070 33.333 1.47 6.30 0.00 4.30
3431 3781 5.935789 TGACACTTATTTTAAGACGGAAGGG 59.064 40.000 1.47 0.00 0.00 3.95
3442 3792 5.970501 AAGACGGAAGGGGTATTTTCTAT 57.029 39.130 0.00 0.00 0.00 1.98
3567 3918 1.207089 CGTGATCTAGGAAGGTGCCAA 59.793 52.381 0.00 0.00 0.00 4.52
3572 3923 1.168714 CTAGGAAGGTGCCAAAGTGC 58.831 55.000 0.00 0.00 0.00 4.40
3576 3927 1.076044 AAGGTGCCAAAGTGCCACT 60.076 52.632 0.00 0.00 0.00 4.00
3600 4073 2.334977 TGCCACCCTTCAGAGAAGTAA 58.665 47.619 6.08 0.00 0.00 2.24
3601 4074 2.303022 TGCCACCCTTCAGAGAAGTAAG 59.697 50.000 6.08 0.00 0.00 2.34
3604 4092 4.826556 CCACCCTTCAGAGAAGTAAGAAG 58.173 47.826 6.08 0.00 37.74 2.85
3611 4099 5.700722 TCAGAGAAGTAAGAAGCGTTACA 57.299 39.130 8.70 0.00 35.65 2.41
3618 4106 3.767673 AGTAAGAAGCGTTACATCCCTGA 59.232 43.478 8.70 0.00 35.65 3.86
3641 4129 6.493458 TGATAGGAGGTTTCTTTTTCCCTTTG 59.507 38.462 0.00 0.00 0.00 2.77
3655 4143 1.578926 CTTTGGCGGTTGCGATTGA 59.421 52.632 0.00 0.00 44.10 2.57
3682 4170 3.882444 CAATCATCCTCTCCAAGCTTCA 58.118 45.455 0.00 0.00 0.00 3.02
3738 4230 3.991924 ATCCCAGTGCCTCGGCTCT 62.992 63.158 9.65 8.10 44.44 4.09
3792 4284 2.039624 AGGATCCCAGTGCTCCGT 59.960 61.111 8.55 0.00 34.13 4.69
3851 4346 0.751643 GCGCTATTTGGGTGGATGGT 60.752 55.000 0.00 0.00 0.00 3.55
3879 4375 7.012358 CGTTTCATCTTTGAGCTAGTCTTTTC 58.988 38.462 0.00 0.00 32.27 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.282374 AAACGGCCAGATCCCCACC 62.282 63.158 2.24 0.00 0.00 4.61
1 2 2.046285 CAAACGGCCAGATCCCCAC 61.046 63.158 2.24 0.00 0.00 4.61
2 3 1.570857 ATCAAACGGCCAGATCCCCA 61.571 55.000 2.24 0.00 0.00 4.96
3 4 0.819666 GATCAAACGGCCAGATCCCC 60.820 60.000 2.24 0.00 33.70 4.81
4 5 2.707902 GATCAAACGGCCAGATCCC 58.292 57.895 2.24 0.00 33.70 3.85
6 7 0.179084 TCGGATCAAACGGCCAGATC 60.179 55.000 2.24 9.60 37.91 2.75
7 8 0.462047 GTCGGATCAAACGGCCAGAT 60.462 55.000 2.24 0.00 0.00 2.90
8 9 1.079405 GTCGGATCAAACGGCCAGA 60.079 57.895 2.24 0.00 0.00 3.86
33 34 0.264955 AGAGGCGGAAGGAAGGGATA 59.735 55.000 0.00 0.00 0.00 2.59
58 63 4.081972 CAGGAAATCCGTTTGAGAGAGAGA 60.082 45.833 0.00 0.00 42.08 3.10
59 64 4.180057 CAGGAAATCCGTTTGAGAGAGAG 58.820 47.826 0.00 0.00 42.08 3.20
60 65 3.617531 GCAGGAAATCCGTTTGAGAGAGA 60.618 47.826 0.00 0.00 42.08 3.10
61 66 2.675348 GCAGGAAATCCGTTTGAGAGAG 59.325 50.000 0.00 0.00 42.08 3.20
62 67 2.615493 GGCAGGAAATCCGTTTGAGAGA 60.615 50.000 0.00 0.00 42.08 3.10
63 68 1.740025 GGCAGGAAATCCGTTTGAGAG 59.260 52.381 0.00 0.00 42.08 3.20
64 69 1.073125 TGGCAGGAAATCCGTTTGAGA 59.927 47.619 0.00 0.00 42.08 3.27
65 70 1.533625 TGGCAGGAAATCCGTTTGAG 58.466 50.000 0.00 0.00 42.08 3.02
66 71 1.818060 CATGGCAGGAAATCCGTTTGA 59.182 47.619 0.00 0.00 42.08 2.69
67 72 1.736696 GCATGGCAGGAAATCCGTTTG 60.737 52.381 1.99 0.00 42.08 2.93
68 73 0.532115 GCATGGCAGGAAATCCGTTT 59.468 50.000 1.99 0.00 42.08 3.60
99 104 3.907894 TTTTGTTCCGCTGGATTGTAC 57.092 42.857 0.00 0.00 0.00 2.90
105 110 2.303022 AGAGAGATTTTGTTCCGCTGGA 59.697 45.455 0.00 0.00 0.00 3.86
113 118 4.570930 GAGGACCGAAGAGAGATTTTGTT 58.429 43.478 0.00 0.00 0.00 2.83
143 148 2.151202 GGCAAAGACGTGAATTCTCCA 58.849 47.619 7.05 0.00 0.00 3.86
224 229 2.669781 AGAGGATGCTGGAGAGAGAAG 58.330 52.381 0.00 0.00 0.00 2.85
225 230 2.844654 AGAGGATGCTGGAGAGAGAA 57.155 50.000 0.00 0.00 0.00 2.87
265 276 2.423446 GCTAGGCCGACTCCATGG 59.577 66.667 4.97 4.97 0.00 3.66
266 277 2.423446 GGCTAGGCCGACTCCATG 59.577 66.667 4.61 0.00 39.62 3.66
276 287 2.751837 GGGCACAACTGGCTAGGC 60.752 66.667 9.85 9.85 42.72 3.93
317 329 0.923358 AGATCTGGAGGTCCGTCTCT 59.077 55.000 0.00 0.00 39.43 3.10
318 330 1.028905 CAGATCTGGAGGTCCGTCTC 58.971 60.000 15.38 0.00 39.43 3.36
319 331 0.333312 ACAGATCTGGAGGTCCGTCT 59.667 55.000 26.08 0.00 39.43 4.18
320 332 0.457851 CACAGATCTGGAGGTCCGTC 59.542 60.000 26.08 0.00 39.43 4.79
321 333 0.972983 CCACAGATCTGGAGGTCCGT 60.973 60.000 26.08 0.00 39.43 4.69
322 334 0.972983 ACCACAGATCTGGAGGTCCG 60.973 60.000 27.20 11.22 38.24 4.79
323 335 0.827368 GACCACAGATCTGGAGGTCC 59.173 60.000 36.06 25.83 45.72 4.46
356 368 4.261614 GGTTACCTTGTTTTGAGGAAGCAG 60.262 45.833 0.00 0.00 37.72 4.24
357 369 3.634910 GGTTACCTTGTTTTGAGGAAGCA 59.365 43.478 0.00 0.00 37.72 3.91
360 372 5.104277 TGAGAGGTTACCTTGTTTTGAGGAA 60.104 40.000 4.99 0.00 37.72 3.36
367 379 7.057894 TGTAAACATGAGAGGTTACCTTGTTT 58.942 34.615 25.54 25.54 41.11 2.83
373 385 4.270325 GCGATGTAAACATGAGAGGTTACC 59.730 45.833 0.00 0.00 36.57 2.85
374 386 4.270325 GGCGATGTAAACATGAGAGGTTAC 59.730 45.833 0.00 0.00 36.57 2.50
384 403 6.183360 TGCGTTAATAAAGGCGATGTAAACAT 60.183 34.615 0.00 0.00 46.92 2.71
391 410 4.211164 TGAGATGCGTTAATAAAGGCGATG 59.789 41.667 0.00 0.00 46.92 3.84
392 411 4.377021 TGAGATGCGTTAATAAAGGCGAT 58.623 39.130 0.00 0.00 46.92 4.58
427 446 1.628340 TGCATACTACCACAAGCAGGT 59.372 47.619 0.00 0.00 43.14 4.00
474 500 3.464111 TGAGCGGCTAGGGTAAATTAC 57.536 47.619 0.60 0.00 0.00 1.89
480 506 0.616679 AACCTTGAGCGGCTAGGGTA 60.617 55.000 20.10 0.00 42.91 3.69
493 519 1.067516 CAGGTGCCAACTCAAACCTTG 59.932 52.381 0.00 0.00 41.14 3.61
531 559 0.249868 TTTGCCGTGGTCTGTCAGAG 60.250 55.000 1.75 0.00 0.00 3.35
532 560 0.396435 ATTTGCCGTGGTCTGTCAGA 59.604 50.000 0.00 0.00 0.00 3.27
533 561 1.069022 CAATTTGCCGTGGTCTGTCAG 60.069 52.381 0.00 0.00 0.00 3.51
534 562 0.950836 CAATTTGCCGTGGTCTGTCA 59.049 50.000 0.00 0.00 0.00 3.58
535 563 0.951558 ACAATTTGCCGTGGTCTGTC 59.048 50.000 0.00 0.00 0.00 3.51
562 590 1.282570 CAGGTGCACGCAAACGAAT 59.717 52.632 11.45 0.00 43.93 3.34
601 629 4.391216 CGAGTGAGAAAATCTGTGCTGAAT 59.609 41.667 0.00 0.00 0.00 2.57
637 665 6.026947 ACAGAAAACGAGAGCACTAGTATT 57.973 37.500 0.00 0.00 32.09 1.89
639 667 6.754702 ATACAGAAAACGAGAGCACTAGTA 57.245 37.500 0.00 0.00 32.09 1.82
640 668 5.646577 ATACAGAAAACGAGAGCACTAGT 57.353 39.130 0.00 0.00 33.65 2.57
642 670 6.456584 CGAGTATACAGAAAACGAGAGCACTA 60.457 42.308 5.50 0.00 0.00 2.74
643 671 5.642686 GAGTATACAGAAAACGAGAGCACT 58.357 41.667 5.50 0.00 0.00 4.40
645 673 4.155462 ACGAGTATACAGAAAACGAGAGCA 59.845 41.667 5.50 0.00 0.00 4.26
646 674 4.660105 ACGAGTATACAGAAAACGAGAGC 58.340 43.478 5.50 0.00 0.00 4.09
672 705 3.452627 GTGCCAGGGAAAGATAAGAGAGA 59.547 47.826 0.00 0.00 0.00 3.10
686 721 1.673665 GCTCACAGAAGTGCCAGGG 60.674 63.158 0.00 0.00 45.49 4.45
706 741 6.817765 AACACAACTTTTCTCTGAACAGAA 57.182 33.333 6.01 0.00 36.94 3.02
707 742 6.817765 AAACACAACTTTTCTCTGAACAGA 57.182 33.333 4.45 4.45 35.85 3.41
711 746 6.083630 CGTGAAAACACAACTTTTCTCTGAA 58.916 36.000 0.00 0.00 39.78 3.02
713 748 5.390613 ACGTGAAAACACAACTTTTCTCTG 58.609 37.500 0.00 3.11 39.78 3.35
714 749 5.411669 AGACGTGAAAACACAACTTTTCTCT 59.588 36.000 0.00 0.00 39.78 3.10
723 779 4.566759 CAGAGAAGAGACGTGAAAACACAA 59.433 41.667 0.00 0.00 0.00 3.33
733 789 2.040012 TGGTAGGTCAGAGAAGAGACGT 59.960 50.000 0.00 0.00 35.63 4.34
735 791 3.692690 ACTGGTAGGTCAGAGAAGAGAC 58.307 50.000 0.00 0.00 38.11 3.36
739 795 2.356382 CGCTACTGGTAGGTCAGAGAAG 59.644 54.545 9.43 0.00 38.11 2.85
751 807 0.178958 CCCTATCCTCCGCTACTGGT 60.179 60.000 0.00 0.00 0.00 4.00
775 835 3.757745 TGCGCCTAATTCTAGCAAAAC 57.242 42.857 4.18 0.00 34.66 2.43
792 852 2.813754 TCTTCCCAGAGATTTTGTTGCG 59.186 45.455 0.00 0.00 0.00 4.85
854 915 3.508840 CCTCCGCCCGCAACATTC 61.509 66.667 0.00 0.00 0.00 2.67
894 955 4.978083 TTACCGTTAGTTAGAGGCAGAG 57.022 45.455 0.00 0.00 0.00 3.35
896 957 5.476614 ACTTTTACCGTTAGTTAGAGGCAG 58.523 41.667 0.00 0.00 0.00 4.85
899 960 7.063898 GGCTTTACTTTTACCGTTAGTTAGAGG 59.936 40.741 0.00 0.00 0.00 3.69
900 961 7.816513 AGGCTTTACTTTTACCGTTAGTTAGAG 59.183 37.037 0.00 0.00 0.00 2.43
901 962 7.670364 AGGCTTTACTTTTACCGTTAGTTAGA 58.330 34.615 0.00 0.00 0.00 2.10
937 1014 3.130633 CAGGAGAAATCAACACACGTCA 58.869 45.455 0.00 0.00 0.00 4.35
941 1018 2.227388 CAGGCAGGAGAAATCAACACAC 59.773 50.000 0.00 0.00 0.00 3.82
942 1019 2.507484 CAGGCAGGAGAAATCAACACA 58.493 47.619 0.00 0.00 0.00 3.72
1070 1177 3.998341 TGATTTTTGTACTACCTCGGTGC 59.002 43.478 0.00 0.00 0.00 5.01
1081 1188 7.201393 CGACAGAGAGAGATGTGATTTTTGTAC 60.201 40.741 0.00 0.00 0.00 2.90
1115 1242 6.917477 TCAAAGTACACACGAAAATAGTACGT 59.083 34.615 0.00 0.00 39.84 3.57
1116 1243 7.324322 TCAAAGTACACACGAAAATAGTACG 57.676 36.000 0.00 0.00 39.84 3.67
1187 1330 5.749596 TTCTTTCGCACATCTTTCTTTCA 57.250 34.783 0.00 0.00 0.00 2.69
1268 1419 0.447801 CGCATCCGGAAAAGTCCAAG 59.552 55.000 9.01 0.00 45.26 3.61
1314 1465 1.029681 GAAGGCCACAACCGAAAACT 58.970 50.000 5.01 0.00 33.69 2.66
1329 1480 0.884704 CACCCACACGGAACTGAAGG 60.885 60.000 0.00 0.00 34.64 3.46
1374 1525 6.254281 TGTAATAAAGAAGCAAGCAAGGAC 57.746 37.500 0.00 0.00 0.00 3.85
1375 1526 5.106157 GCTGTAATAAAGAAGCAAGCAAGGA 60.106 40.000 0.00 0.00 35.69 3.36
1376 1527 5.098211 GCTGTAATAAAGAAGCAAGCAAGG 58.902 41.667 0.00 0.00 35.69 3.61
1377 1528 5.947443 AGCTGTAATAAAGAAGCAAGCAAG 58.053 37.500 0.00 0.00 38.14 4.01
1378 1529 5.106157 GGAGCTGTAATAAAGAAGCAAGCAA 60.106 40.000 0.00 0.00 38.14 3.91
1379 1530 4.396166 GGAGCTGTAATAAAGAAGCAAGCA 59.604 41.667 0.00 0.00 38.14 3.91
1491 1648 1.001378 GGTTAAGCAAGCCACACACTG 60.001 52.381 0.00 0.00 0.00 3.66
1492 1649 1.133792 AGGTTAAGCAAGCCACACACT 60.134 47.619 7.52 0.00 32.36 3.55
1493 1650 1.001378 CAGGTTAAGCAAGCCACACAC 60.001 52.381 7.52 0.00 32.36 3.82
1494 1651 1.317613 CAGGTTAAGCAAGCCACACA 58.682 50.000 7.52 0.00 32.36 3.72
1495 1652 0.039165 GCAGGTTAAGCAAGCCACAC 60.039 55.000 7.52 0.00 32.36 3.82
1496 1653 0.467106 TGCAGGTTAAGCAAGCCACA 60.467 50.000 16.21 0.00 39.39 4.17
1497 1654 0.673437 TTGCAGGTTAAGCAAGCCAC 59.327 50.000 16.21 0.00 46.13 5.01
1498 1655 3.123943 TTGCAGGTTAAGCAAGCCA 57.876 47.368 16.21 5.91 46.13 4.75
1575 1735 5.992829 TCACGCTTAAGAAAGTGATTAACCA 59.007 36.000 18.54 2.79 44.46 3.67
1616 1776 8.624776 GCTTAAGAAAGTGATTAACCATAGCAT 58.375 33.333 6.67 0.00 34.99 3.79
1617 1777 7.201609 CGCTTAAGAAAGTGATTAACCATAGCA 60.202 37.037 6.67 0.00 44.46 3.49
1618 1778 7.126398 CGCTTAAGAAAGTGATTAACCATAGC 58.874 38.462 6.67 0.00 44.46 2.97
1619 1779 8.116753 CACGCTTAAGAAAGTGATTAACCATAG 58.883 37.037 16.27 0.00 44.46 2.23
1620 1780 7.820386 TCACGCTTAAGAAAGTGATTAACCATA 59.180 33.333 18.54 1.75 44.46 2.74
1621 1781 6.653320 TCACGCTTAAGAAAGTGATTAACCAT 59.347 34.615 18.54 0.00 44.46 3.55
1622 1782 5.992829 TCACGCTTAAGAAAGTGATTAACCA 59.007 36.000 18.54 2.79 44.46 3.67
1623 1783 6.367969 TCTCACGCTTAAGAAAGTGATTAACC 59.632 38.462 21.03 0.00 44.46 2.85
1624 1784 7.095774 TGTCTCACGCTTAAGAAAGTGATTAAC 60.096 37.037 21.03 18.94 44.46 2.01
1625 1785 6.926826 TGTCTCACGCTTAAGAAAGTGATTAA 59.073 34.615 21.03 12.03 44.46 1.40
1626 1786 6.452242 TGTCTCACGCTTAAGAAAGTGATTA 58.548 36.000 21.03 13.68 44.46 1.75
1627 1787 5.297547 TGTCTCACGCTTAAGAAAGTGATT 58.702 37.500 21.03 0.00 44.46 2.57
1628 1788 4.883083 TGTCTCACGCTTAAGAAAGTGAT 58.117 39.130 21.03 0.00 44.46 3.06
1629 1789 4.299155 CTGTCTCACGCTTAAGAAAGTGA 58.701 43.478 20.14 20.14 44.46 3.41
1630 1790 3.430218 CCTGTCTCACGCTTAAGAAAGTG 59.570 47.826 6.67 12.43 46.58 3.16
1631 1791 3.654414 CCTGTCTCACGCTTAAGAAAGT 58.346 45.455 6.67 0.00 34.99 2.66
1632 1792 2.413453 GCCTGTCTCACGCTTAAGAAAG 59.587 50.000 6.67 0.00 35.68 2.62
1633 1793 2.037251 AGCCTGTCTCACGCTTAAGAAA 59.963 45.455 6.67 0.00 0.00 2.52
1634 1794 1.618837 AGCCTGTCTCACGCTTAAGAA 59.381 47.619 6.67 0.00 0.00 2.52
1635 1795 1.067565 CAGCCTGTCTCACGCTTAAGA 60.068 52.381 6.67 0.00 0.00 2.10
1636 1796 1.337260 ACAGCCTGTCTCACGCTTAAG 60.337 52.381 0.00 0.00 0.00 1.85
1637 1797 0.679505 ACAGCCTGTCTCACGCTTAA 59.320 50.000 0.00 0.00 0.00 1.85
1638 1798 0.243907 GACAGCCTGTCTCACGCTTA 59.756 55.000 17.57 0.00 43.73 3.09
1639 1799 1.005630 GACAGCCTGTCTCACGCTT 60.006 57.895 17.57 0.00 43.73 4.68
1640 1800 2.653702 GACAGCCTGTCTCACGCT 59.346 61.111 17.57 0.00 43.73 5.07
1726 1886 6.667848 CCCCAAATAATTACAGAAAAGTCCCT 59.332 38.462 0.00 0.00 0.00 4.20
1790 1951 2.964209 TGGACAGTGAGAGGAGAAAGT 58.036 47.619 0.00 0.00 0.00 2.66
1888 2050 3.475566 TTATGCTACTCTGGACCATGC 57.524 47.619 0.00 0.00 0.00 4.06
1908 2075 3.188460 CGCAGTTGCATACCTTGTACTTT 59.812 43.478 4.84 0.00 42.21 2.66
1909 2076 2.742053 CGCAGTTGCATACCTTGTACTT 59.258 45.455 4.84 0.00 42.21 2.24
1910 2077 2.289444 ACGCAGTTGCATACCTTGTACT 60.289 45.455 4.84 0.00 37.78 2.73
1911 2078 2.073816 ACGCAGTTGCATACCTTGTAC 58.926 47.619 4.84 0.00 37.78 2.90
1912 2079 2.073056 CACGCAGTTGCATACCTTGTA 58.927 47.619 4.84 0.00 41.61 2.41
1913 2080 0.874390 CACGCAGTTGCATACCTTGT 59.126 50.000 4.84 0.00 41.61 3.16
1923 2090 1.159285 ATCATGTGTCCACGCAGTTG 58.841 50.000 0.00 0.00 41.61 3.16
1937 2104 4.400251 ACAGCCTCCATAACAACAATCATG 59.600 41.667 0.00 0.00 0.00 3.07
1938 2105 4.603131 ACAGCCTCCATAACAACAATCAT 58.397 39.130 0.00 0.00 0.00 2.45
1941 2108 8.766994 AATATTACAGCCTCCATAACAACAAT 57.233 30.769 0.00 0.00 0.00 2.71
1946 2113 6.508030 TGGAATATTACAGCCTCCATAACA 57.492 37.500 0.00 0.00 31.19 2.41
1957 2124 6.319658 AGTGCCACAAAGATGGAATATTACAG 59.680 38.462 6.51 0.00 43.02 2.74
1958 2125 6.186957 AGTGCCACAAAGATGGAATATTACA 58.813 36.000 1.99 1.99 43.02 2.41
1960 2127 6.543465 CAGAGTGCCACAAAGATGGAATATTA 59.457 38.462 0.00 0.00 43.02 0.98
1961 2128 5.359009 CAGAGTGCCACAAAGATGGAATATT 59.641 40.000 0.00 0.00 43.02 1.28
1962 2129 4.885907 CAGAGTGCCACAAAGATGGAATAT 59.114 41.667 0.00 0.00 43.02 1.28
1963 2130 4.019411 TCAGAGTGCCACAAAGATGGAATA 60.019 41.667 0.00 0.00 43.02 1.75
1964 2131 3.087031 CAGAGTGCCACAAAGATGGAAT 58.913 45.455 0.00 0.00 43.02 3.01
1965 2132 2.106338 TCAGAGTGCCACAAAGATGGAA 59.894 45.455 0.00 0.00 43.02 3.53
1966 2133 1.699083 TCAGAGTGCCACAAAGATGGA 59.301 47.619 0.00 0.00 43.02 3.41
1967 2134 2.189594 TCAGAGTGCCACAAAGATGG 57.810 50.000 0.00 0.00 43.26 3.51
1968 2135 4.778534 ATTTCAGAGTGCCACAAAGATG 57.221 40.909 0.00 0.00 0.00 2.90
1978 2210 6.369890 TGTCTTGTGAATCTATTTCAGAGTGC 59.630 38.462 0.00 0.00 44.89 4.40
1997 2296 7.118390 CAGTTTACCTTCAACCTATCTGTCTTG 59.882 40.741 0.00 0.00 0.00 3.02
2002 2301 4.636206 GCCAGTTTACCTTCAACCTATCTG 59.364 45.833 0.00 0.00 0.00 2.90
2004 2303 4.636206 CAGCCAGTTTACCTTCAACCTATC 59.364 45.833 0.00 0.00 0.00 2.08
2007 2306 2.441750 TCAGCCAGTTTACCTTCAACCT 59.558 45.455 0.00 0.00 0.00 3.50
2071 2372 0.108207 GCCTGATCTCACCCCTCATG 59.892 60.000 0.00 0.00 0.00 3.07
2092 2403 3.565482 CAGCTGAAACTTAAGGCTTGTGA 59.435 43.478 8.42 0.00 0.00 3.58
2096 2407 3.149981 GACCAGCTGAAACTTAAGGCTT 58.850 45.455 17.39 4.58 0.00 4.35
2142 2481 4.684484 ACCCCGTTTGATATCCTAGAAC 57.316 45.455 0.00 0.08 0.00 3.01
2153 2492 4.401519 TCAATAAACAACAACCCCGTTTGA 59.598 37.500 0.00 0.00 34.78 2.69
2159 2498 2.352323 CGGCTCAATAAACAACAACCCC 60.352 50.000 0.00 0.00 0.00 4.95
2179 2518 4.928661 ATTAGTAAGCAACAAGAGCACG 57.071 40.909 0.00 0.00 0.00 5.34
2180 2519 7.492669 TCTCATATTAGTAAGCAACAAGAGCAC 59.507 37.037 0.00 0.00 0.00 4.40
2188 2527 9.482627 ACTTAGCATCTCATATTAGTAAGCAAC 57.517 33.333 0.00 0.00 0.00 4.17
2231 2570 0.314302 GCATGGCAGCAGATCATTCC 59.686 55.000 0.00 0.00 0.00 3.01
2244 2587 1.607148 GTAAATAACGAGGGGCATGGC 59.393 52.381 11.56 11.56 0.00 4.40
2255 2598 5.123344 AGTGGCCAAAAGCTAGTAAATAACG 59.877 40.000 7.24 0.00 43.05 3.18
2262 2605 5.237236 AGTAAAGTGGCCAAAAGCTAGTA 57.763 39.130 7.24 0.00 43.05 1.82
2275 2618 8.076178 CACAAGAACAAAGGATTAGTAAAGTGG 58.924 37.037 0.00 0.00 0.00 4.00
2282 2625 6.680378 GCACAACACAAGAACAAAGGATTAGT 60.680 38.462 0.00 0.00 0.00 2.24
2283 2626 5.687285 GCACAACACAAGAACAAAGGATTAG 59.313 40.000 0.00 0.00 0.00 1.73
2323 2667 4.114794 CCAGACCAAAGCTTGAAACAAAG 58.885 43.478 0.00 0.00 0.00 2.77
2327 2671 3.858503 GCATCCAGACCAAAGCTTGAAAC 60.859 47.826 0.00 0.00 0.00 2.78
2328 2672 2.297033 GCATCCAGACCAAAGCTTGAAA 59.703 45.455 0.00 0.00 0.00 2.69
2330 2674 1.074405 AGCATCCAGACCAAAGCTTGA 59.926 47.619 0.00 0.00 0.00 3.02
2331 2675 1.201647 CAGCATCCAGACCAAAGCTTG 59.798 52.381 0.00 0.00 0.00 4.01
2332 2676 1.202976 ACAGCATCCAGACCAAAGCTT 60.203 47.619 0.00 0.00 0.00 3.74
2333 2677 0.403271 ACAGCATCCAGACCAAAGCT 59.597 50.000 0.00 0.00 0.00 3.74
2334 2678 1.251251 AACAGCATCCAGACCAAAGC 58.749 50.000 0.00 0.00 0.00 3.51
2335 2679 2.624838 ACAAACAGCATCCAGACCAAAG 59.375 45.455 0.00 0.00 0.00 2.77
2336 2680 2.361757 CACAAACAGCATCCAGACCAAA 59.638 45.455 0.00 0.00 0.00 3.28
2337 2681 1.955778 CACAAACAGCATCCAGACCAA 59.044 47.619 0.00 0.00 0.00 3.67
2338 2682 1.608055 CACAAACAGCATCCAGACCA 58.392 50.000 0.00 0.00 0.00 4.02
2339 2683 0.242017 GCACAAACAGCATCCAGACC 59.758 55.000 0.00 0.00 0.00 3.85
2340 2684 1.242076 AGCACAAACAGCATCCAGAC 58.758 50.000 0.00 0.00 0.00 3.51
2341 2685 1.610038 CAAGCACAAACAGCATCCAGA 59.390 47.619 0.00 0.00 0.00 3.86
2342 2686 1.338973 ACAAGCACAAACAGCATCCAG 59.661 47.619 0.00 0.00 0.00 3.86
2343 2687 1.067364 CACAAGCACAAACAGCATCCA 59.933 47.619 0.00 0.00 0.00 3.41
2344 2688 1.603678 CCACAAGCACAAACAGCATCC 60.604 52.381 0.00 0.00 0.00 3.51
2345 2689 1.603678 CCCACAAGCACAAACAGCATC 60.604 52.381 0.00 0.00 0.00 3.91
2346 2690 0.390124 CCCACAAGCACAAACAGCAT 59.610 50.000 0.00 0.00 0.00 3.79
2347 2691 0.969917 ACCCACAAGCACAAACAGCA 60.970 50.000 0.00 0.00 0.00 4.41
2348 2692 0.175531 AACCCACAAGCACAAACAGC 59.824 50.000 0.00 0.00 0.00 4.40
2349 2693 2.671130 AAACCCACAAGCACAAACAG 57.329 45.000 0.00 0.00 0.00 3.16
2350 2694 3.244215 TGAAAAACCCACAAGCACAAACA 60.244 39.130 0.00 0.00 0.00 2.83
2351 2695 3.330267 TGAAAAACCCACAAGCACAAAC 58.670 40.909 0.00 0.00 0.00 2.93
2352 2696 3.007398 ACTGAAAAACCCACAAGCACAAA 59.993 39.130 0.00 0.00 0.00 2.83
2353 2697 2.564947 ACTGAAAAACCCACAAGCACAA 59.435 40.909 0.00 0.00 0.00 3.33
2354 2698 2.175202 ACTGAAAAACCCACAAGCACA 58.825 42.857 0.00 0.00 0.00 4.57
2355 2699 2.959507 ACTGAAAAACCCACAAGCAC 57.040 45.000 0.00 0.00 0.00 4.40
2356 2700 3.971245 AAACTGAAAAACCCACAAGCA 57.029 38.095 0.00 0.00 0.00 3.91
2357 2701 4.000325 ACAAAACTGAAAAACCCACAAGC 59.000 39.130 0.00 0.00 0.00 4.01
2358 2702 6.203723 TGAAACAAAACTGAAAAACCCACAAG 59.796 34.615 0.00 0.00 0.00 3.16
2359 2703 6.055588 TGAAACAAAACTGAAAAACCCACAA 58.944 32.000 0.00 0.00 0.00 3.33
2360 2704 5.611374 TGAAACAAAACTGAAAAACCCACA 58.389 33.333 0.00 0.00 0.00 4.17
2361 2705 6.546972 TTGAAACAAAACTGAAAAACCCAC 57.453 33.333 0.00 0.00 0.00 4.61
2362 2706 5.180304 GCTTGAAACAAAACTGAAAAACCCA 59.820 36.000 0.00 0.00 0.00 4.51
2363 2707 5.411361 AGCTTGAAACAAAACTGAAAAACCC 59.589 36.000 0.00 0.00 0.00 4.11
2364 2708 6.480524 AGCTTGAAACAAAACTGAAAAACC 57.519 33.333 0.00 0.00 0.00 3.27
2405 2749 8.001881 TCAGGCAAACATAGTTAAGTCAAAAA 57.998 30.769 0.00 0.00 0.00 1.94
2408 2752 6.374333 GGATCAGGCAAACATAGTTAAGTCAA 59.626 38.462 0.00 0.00 0.00 3.18
2433 2777 4.677779 GCCACAAATAATGCCCTGTACAAG 60.678 45.833 0.00 0.00 0.00 3.16
2456 2800 2.022195 CCCATCTTGAAGTCTGGCATG 58.978 52.381 9.91 0.00 0.00 4.06
2693 3037 2.675423 TCGTCACCTCCTCCACCG 60.675 66.667 0.00 0.00 0.00 4.94
2723 3067 3.438360 CTCATTGTCATCATCGTCGTCA 58.562 45.455 0.00 0.00 0.00 4.35
2732 3079 1.816224 TCGTCGTCCTCATTGTCATCA 59.184 47.619 0.00 0.00 0.00 3.07
2765 3112 1.737196 CGTCTTCAGCAGCGACATCG 61.737 60.000 0.00 0.00 43.27 3.84
2878 3225 1.971357 TCGAAGGGCTTCACTTCTTCT 59.029 47.619 7.17 0.00 41.61 2.85
2922 3269 3.755378 GTGAAGAACAGGCACATCTCATT 59.245 43.478 0.00 0.00 32.96 2.57
3335 3685 7.733047 AGACAATTATTTTAAAACAGAGGGGGT 59.267 33.333 1.97 0.00 0.00 4.95
3337 3687 8.802267 TGAGACAATTATTTTAAAACAGAGGGG 58.198 33.333 1.97 0.00 0.00 4.79
3400 3750 8.557029 CCGTCTTAAAATAAGTGTCAGAACTTT 58.443 33.333 0.00 0.00 40.77 2.66
3401 3751 7.929785 TCCGTCTTAAAATAAGTGTCAGAACTT 59.070 33.333 0.00 0.00 42.89 2.66
3402 3752 7.439381 TCCGTCTTAAAATAAGTGTCAGAACT 58.561 34.615 0.00 0.00 0.00 3.01
3403 3753 7.647907 TCCGTCTTAAAATAAGTGTCAGAAC 57.352 36.000 0.00 0.00 0.00 3.01
3404 3754 7.386848 CCTTCCGTCTTAAAATAAGTGTCAGAA 59.613 37.037 0.00 0.00 0.00 3.02
3405 3755 6.872020 CCTTCCGTCTTAAAATAAGTGTCAGA 59.128 38.462 0.00 0.00 0.00 3.27
3406 3756 6.092259 CCCTTCCGTCTTAAAATAAGTGTCAG 59.908 42.308 0.00 0.00 0.00 3.51
3407 3757 5.935789 CCCTTCCGTCTTAAAATAAGTGTCA 59.064 40.000 0.00 0.00 0.00 3.58
3408 3758 5.353400 CCCCTTCCGTCTTAAAATAAGTGTC 59.647 44.000 0.00 0.00 0.00 3.67
3409 3759 5.221986 ACCCCTTCCGTCTTAAAATAAGTGT 60.222 40.000 0.00 0.00 0.00 3.55
3410 3760 5.250982 ACCCCTTCCGTCTTAAAATAAGTG 58.749 41.667 0.00 0.00 0.00 3.16
3411 3761 5.509832 ACCCCTTCCGTCTTAAAATAAGT 57.490 39.130 0.00 0.00 0.00 2.24
3412 3762 8.515695 AAATACCCCTTCCGTCTTAAAATAAG 57.484 34.615 0.00 0.00 0.00 1.73
3413 3763 8.882557 AAAATACCCCTTCCGTCTTAAAATAA 57.117 30.769 0.00 0.00 0.00 1.40
3414 3764 8.330993 AGAAAATACCCCTTCCGTCTTAAAATA 58.669 33.333 0.00 0.00 0.00 1.40
3415 3765 7.179966 AGAAAATACCCCTTCCGTCTTAAAAT 58.820 34.615 0.00 0.00 0.00 1.82
3416 3766 6.545567 AGAAAATACCCCTTCCGTCTTAAAA 58.454 36.000 0.00 0.00 0.00 1.52
3417 3767 6.130692 AGAAAATACCCCTTCCGTCTTAAA 57.869 37.500 0.00 0.00 0.00 1.52
3418 3768 5.767277 AGAAAATACCCCTTCCGTCTTAA 57.233 39.130 0.00 0.00 0.00 1.85
3419 3769 8.731591 ATATAGAAAATACCCCTTCCGTCTTA 57.268 34.615 0.00 0.00 0.00 2.10
3420 3770 5.970501 ATAGAAAATACCCCTTCCGTCTT 57.029 39.130 0.00 0.00 0.00 3.01
3421 3771 8.731591 TTATATAGAAAATACCCCTTCCGTCT 57.268 34.615 0.00 0.00 0.00 4.18
3456 3806 6.966534 ATTTTCTTTTGGACAGAGATGTGT 57.033 33.333 0.00 0.00 0.00 3.72
3457 3807 9.748708 TTTTATTTTCTTTTGGACAGAGATGTG 57.251 29.630 0.00 0.00 0.00 3.21
3572 3923 0.251297 TGAAGGGTGGCATCAAGTGG 60.251 55.000 0.00 0.00 0.00 4.00
3576 3927 1.361204 TCTCTGAAGGGTGGCATCAA 58.639 50.000 0.00 0.00 0.00 2.57
3600 4073 3.322254 CCTATCAGGGATGTAACGCTTCT 59.678 47.826 0.00 0.00 0.00 2.85
3601 4074 3.321111 TCCTATCAGGGATGTAACGCTTC 59.679 47.826 0.00 0.00 35.59 3.86
3604 4092 2.028930 CCTCCTATCAGGGATGTAACGC 60.029 54.545 0.00 0.00 35.59 4.84
3611 4099 6.408770 AAAAAGAAACCTCCTATCAGGGAT 57.591 37.500 0.00 0.00 37.96 3.85
3618 4106 5.780282 CCAAAGGGAAAAAGAAACCTCCTAT 59.220 40.000 0.00 0.00 35.59 2.57
3641 4129 0.307760 CCTTATCAATCGCAACCGCC 59.692 55.000 0.00 0.00 33.11 6.13
3655 4143 4.749166 GCTTGGAGAGGATGATTGCCTTAT 60.749 45.833 0.00 0.00 35.44 1.73
3682 4170 0.107017 CGCTCCATGGGTTCCTTGAT 60.107 55.000 13.02 0.00 31.33 2.57
3738 4230 7.148018 CGGTCACCTAACCTAAACTATTAGTCA 60.148 40.741 0.00 0.00 37.42 3.41
3740 4232 6.097412 CCGGTCACCTAACCTAAACTATTAGT 59.903 42.308 0.00 0.00 37.42 2.24
3792 4284 3.659183 ACCTAAACTACTAGCCGGAGA 57.341 47.619 5.05 0.00 0.00 3.71
3851 4346 1.896220 AGCTCAAAGATGAAACGCCA 58.104 45.000 0.00 0.00 34.49 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.