Multiple sequence alignment - TraesCS2A01G523900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G523900 chr2A 100.000 2942 0 0 1 2942 745089131 745086190 0 5433
1 TraesCS2A01G523900 chr2D 89.271 1687 148 17 1 1673 614752568 614750901 0 2082
2 TraesCS2A01G523900 chr2D 87.954 963 72 19 1909 2855 614750899 614749965 0 1096
3 TraesCS2A01G523900 chr2B 86.999 1846 186 28 54 1886 749106652 749104848 0 2030
4 TraesCS2A01G523900 chr2B 89.499 838 54 17 2025 2855 749104849 749104039 0 1029


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G523900 chr2A 745086190 745089131 2941 True 5433.0 5433 100.0000 1 2942 1 chr2A.!!$R1 2941
1 TraesCS2A01G523900 chr2D 614749965 614752568 2603 True 1589.0 2082 88.6125 1 2855 2 chr2D.!!$R1 2854
2 TraesCS2A01G523900 chr2B 749104039 749106652 2613 True 1529.5 2030 88.2490 54 2855 2 chr2B.!!$R1 2801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 1.376466 GACCAGGAGGCTCAAGCAA 59.624 57.895 17.69 0.0 44.36 3.91 F
1744 1759 0.035439 ACCATCACCTTTAGCACCCG 60.035 55.000 0.00 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1893 1908 0.035056 CTGGGGAGCTAAAGGTGGTG 60.035 60.0 0.00 0.0 0.00 4.17 R
2822 2859 0.179260 CACGTGTGGTTGCGTATTCG 60.179 55.0 7.58 0.0 39.48 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.462811 GTCATGTACTCCTGTATATATGACCAG 58.537 40.741 8.95 0.00 38.93 4.00
42 43 1.376466 GACCAGGAGGCTCAAGCAA 59.624 57.895 17.69 0.00 44.36 3.91
52 53 3.347216 AGGCTCAAGCAATAAACATCGT 58.653 40.909 4.13 0.00 44.36 3.73
67 68 1.956477 CATCGTTTCCATCAATCCCCC 59.044 52.381 0.00 0.00 0.00 5.40
107 110 7.901322 ACAATATATACCCTCTCTTAGATGCCA 59.099 37.037 0.00 0.00 0.00 4.92
123 126 5.509498 AGATGCCAAAGTATTTAGAAGCCA 58.491 37.500 0.00 0.00 35.03 4.75
151 155 9.606631 GATCATGTTAGGAAGAAATAACACTCT 57.393 33.333 0.27 0.00 42.82 3.24
172 176 5.789521 TCTTAAGATTGTCGGAACACATGA 58.210 37.500 0.00 0.00 34.35 3.07
173 177 5.637810 TCTTAAGATTGTCGGAACACATGAC 59.362 40.000 0.00 0.00 34.35 3.06
174 178 3.401033 AGATTGTCGGAACACATGACA 57.599 42.857 0.00 0.00 40.62 3.58
175 179 3.942829 AGATTGTCGGAACACATGACAT 58.057 40.909 0.00 0.00 41.80 3.06
176 180 3.686241 AGATTGTCGGAACACATGACATG 59.314 43.478 14.02 14.02 41.80 3.21
177 181 2.542020 TGTCGGAACACATGACATGT 57.458 45.000 15.48 15.48 46.22 3.21
178 182 2.844946 TGTCGGAACACATGACATGTT 58.155 42.857 18.52 6.23 42.70 2.71
179 183 3.210227 TGTCGGAACACATGACATGTTT 58.790 40.909 18.52 15.04 42.70 2.83
215 219 9.800433 CTACCAAATATCATGCAATTTACACAA 57.200 29.630 0.00 0.00 0.00 3.33
282 286 6.719370 ACATAGAGAGTGAGAGAAACAAGTCT 59.281 38.462 0.00 0.00 0.00 3.24
321 325 6.890268 AGATCATAGGTATGTCGGCAATACTA 59.110 38.462 0.00 0.00 35.26 1.82
326 330 6.852420 AGGTATGTCGGCAATACTACATAT 57.148 37.500 0.00 0.00 37.22 1.78
432 436 9.554395 TCAAGTAGTAACTCAATTGTCAAATCA 57.446 29.630 5.13 0.00 33.75 2.57
459 463 7.624549 ACATATAAGATTGGATGGCTACGATT 58.375 34.615 0.00 0.00 0.00 3.34
460 464 8.758829 ACATATAAGATTGGATGGCTACGATTA 58.241 33.333 0.00 0.00 0.00 1.75
473 477 3.486875 GCTACGATTAAGCGCACCAAATT 60.487 43.478 13.91 0.00 33.86 1.82
545 549 7.173735 TGGATAGCAACTATGACATGCATTTAG 59.826 37.037 0.00 0.00 42.45 1.85
552 556 9.844790 CAACTATGACATGCATTTAGAAAAAGA 57.155 29.630 0.00 0.00 38.44 2.52
556 560 7.585286 TGACATGCATTTAGAAAAAGATTGC 57.415 32.000 0.00 0.00 31.62 3.56
573 577 2.118313 TGCTGGATGTGGATGAACTG 57.882 50.000 0.00 0.00 0.00 3.16
576 580 2.616256 GCTGGATGTGGATGAACTGACA 60.616 50.000 0.00 0.00 0.00 3.58
584 588 6.930667 TGTGGATGAACTGACATAATGATG 57.069 37.500 0.00 0.00 39.16 3.07
587 591 5.297527 TGGATGAACTGACATAATGATGCAC 59.702 40.000 0.00 0.00 36.43 4.57
588 592 4.863152 TGAACTGACATAATGATGCACG 57.137 40.909 0.00 0.00 36.43 5.34
589 593 3.063861 TGAACTGACATAATGATGCACGC 59.936 43.478 0.00 0.00 36.43 5.34
590 594 1.594397 ACTGACATAATGATGCACGCG 59.406 47.619 3.53 3.53 36.43 6.01
592 596 2.794350 CTGACATAATGATGCACGCGTA 59.206 45.455 13.44 0.00 36.43 4.42
593 597 2.538037 TGACATAATGATGCACGCGTAC 59.462 45.455 13.44 7.10 36.43 3.67
595 599 1.784283 CATAATGATGCACGCGTACGA 59.216 47.619 21.65 0.00 43.93 3.43
596 600 2.128367 TAATGATGCACGCGTACGAT 57.872 45.000 21.65 3.61 43.93 3.73
597 601 2.128367 AATGATGCACGCGTACGATA 57.872 45.000 21.65 0.00 43.93 2.92
598 602 2.347697 ATGATGCACGCGTACGATAT 57.652 45.000 21.65 1.63 43.93 1.63
600 604 3.481112 TGATGCACGCGTACGATATAT 57.519 42.857 21.65 5.82 43.93 0.86
602 606 4.231439 TGATGCACGCGTACGATATATTT 58.769 39.130 21.65 0.00 43.93 1.40
603 607 4.089351 TGATGCACGCGTACGATATATTTG 59.911 41.667 21.65 5.23 43.93 2.32
605 609 2.981805 GCACGCGTACGATATATTTGGA 59.018 45.455 21.65 0.00 43.93 3.53
613 625 8.466799 CGCGTACGATATATTTGGATAATGTAC 58.533 37.037 21.65 0.00 43.93 2.90
701 713 8.114331 ACATTGATTGCTGATTAAAGACTTGA 57.886 30.769 0.00 0.00 0.00 3.02
712 724 7.162761 TGATTAAAGACTTGACGGTTTGGATA 58.837 34.615 0.00 0.00 0.00 2.59
717 729 6.295719 AGACTTGACGGTTTGGATATACTT 57.704 37.500 0.00 0.00 0.00 2.24
721 733 9.106070 GACTTGACGGTTTGGATATACTTAAAT 57.894 33.333 0.00 0.00 0.00 1.40
780 792 5.957771 ATGTGTGGATAAGGATGTACACT 57.042 39.130 0.00 0.00 39.19 3.55
822 834 8.755941 CCGTGAATTGTATAGAACATAGACAAG 58.244 37.037 2.16 0.00 38.10 3.16
843 855 3.009916 AGCTTCATGTTTCTGGAGATGGT 59.990 43.478 0.00 0.00 0.00 3.55
848 860 4.520111 TCATGTTTCTGGAGATGGTGTTTG 59.480 41.667 0.00 0.00 0.00 2.93
851 863 3.576078 TTCTGGAGATGGTGTTTGTGT 57.424 42.857 0.00 0.00 0.00 3.72
855 867 4.709397 TCTGGAGATGGTGTTTGTGTTTTT 59.291 37.500 0.00 0.00 0.00 1.94
909 922 5.892119 TCCTCGTATCTCCAAGTAAACTGAT 59.108 40.000 0.00 0.00 0.00 2.90
910 923 5.980116 CCTCGTATCTCCAAGTAAACTGATG 59.020 44.000 0.00 0.00 0.00 3.07
960 975 8.723942 ATCTTTTGGTAGATACTTGTAGCTTG 57.276 34.615 3.85 0.00 33.17 4.01
965 980 4.991687 GGTAGATACTTGTAGCTTGCCATC 59.008 45.833 3.85 0.00 0.00 3.51
972 987 3.981071 TGTAGCTTGCCATCTGTAGTT 57.019 42.857 0.00 0.00 0.00 2.24
974 989 2.867109 AGCTTGCCATCTGTAGTTGT 57.133 45.000 0.00 0.00 0.00 3.32
979 994 4.093556 GCTTGCCATCTGTAGTTGTAAGTC 59.906 45.833 0.00 0.00 0.00 3.01
980 995 4.202245 TGCCATCTGTAGTTGTAAGTCC 57.798 45.455 0.00 0.00 0.00 3.85
1004 1019 6.769822 CCTTCAGTTATCCATTTGAGTATGCT 59.230 38.462 0.00 0.00 0.00 3.79
1020 1035 2.730524 GCTGAGGCAGGAGGTCCTC 61.731 68.421 10.78 10.78 46.65 3.71
1022 1037 0.617249 CTGAGGCAGGAGGTCCTCTT 60.617 60.000 18.58 8.42 46.65 2.85
1026 1041 2.674220 GCAGGAGGTCCTCTTGGGG 61.674 68.421 27.33 7.64 46.65 4.96
1038 1053 1.002134 CTTGGGGGTCTGTCGCATT 60.002 57.895 0.00 0.00 0.00 3.56
1116 1131 1.609501 TGCCAGTAACCTCTCCGCT 60.610 57.895 0.00 0.00 0.00 5.52
1122 1137 0.099082 GTAACCTCTCCGCTCTCACG 59.901 60.000 0.00 0.00 0.00 4.35
1173 1188 2.301346 GAATCGGGAAAGATGCATGGT 58.699 47.619 2.46 0.00 0.00 3.55
1181 1196 3.198417 GGAAAGATGCATGGTTTTGGGAT 59.802 43.478 2.46 0.00 0.00 3.85
1192 1207 1.201414 GTTTTGGGATGCCGTTAGTGG 59.799 52.381 0.00 0.00 0.00 4.00
1231 1246 3.757947 TCCTGTCAGGAGATCCACTTA 57.242 47.619 18.15 0.00 40.06 2.24
1236 1251 4.278310 TGTCAGGAGATCCACTTATCGAA 58.722 43.478 0.92 0.00 38.89 3.71
1239 1254 2.623889 AGGAGATCCACTTATCGAACCG 59.376 50.000 0.92 0.00 38.89 4.44
1271 1286 5.245531 TGAACAAGCGAAAGATAGGATTGT 58.754 37.500 0.00 0.00 0.00 2.71
1276 1291 5.931441 AGCGAAAGATAGGATTGTATTGC 57.069 39.130 0.00 0.00 0.00 3.56
1284 1299 3.920231 AGGATTGTATTGCTGCAGAGA 57.080 42.857 20.43 4.69 0.00 3.10
1291 1306 1.273759 ATTGCTGCAGAGAGAGGTGA 58.726 50.000 20.43 0.00 0.00 4.02
1313 1328 2.134789 AGGTTGGACATGGAGAATGC 57.865 50.000 0.00 0.00 40.22 3.56
1316 1331 2.562298 GGTTGGACATGGAGAATGCAAA 59.438 45.455 0.00 0.00 42.43 3.68
1321 1336 3.314635 GGACATGGAGAATGCAAAGCTAG 59.685 47.826 0.00 0.00 42.43 3.42
1323 1338 4.789807 ACATGGAGAATGCAAAGCTAGAT 58.210 39.130 0.00 0.00 42.43 1.98
1366 1381 4.216902 TGCAACACATCAAGAAGATCCAAG 59.783 41.667 0.00 0.00 33.72 3.61
1378 1393 1.988107 AGATCCAAGCTCAGAACCCAA 59.012 47.619 0.00 0.00 0.00 4.12
1381 1396 0.111253 CCAAGCTCAGAACCCAAGGT 59.889 55.000 0.00 0.00 37.65 3.50
1409 1424 6.208204 CCAGCAAATAATATCTTCTCCAAGGG 59.792 42.308 0.00 0.00 0.00 3.95
1450 1465 4.911390 AGACCTAACCAACCTCTTCAATG 58.089 43.478 0.00 0.00 0.00 2.82
1451 1466 3.421844 ACCTAACCAACCTCTTCAATGC 58.578 45.455 0.00 0.00 0.00 3.56
1455 1470 1.272147 ACCAACCTCTTCAATGCCCTC 60.272 52.381 0.00 0.00 0.00 4.30
1486 1501 4.095483 TCAAGGAGGTAATTAGACGACGTC 59.905 45.833 20.25 20.25 0.00 4.34
1506 1521 0.322456 TGCCTCCACTACAACATGGC 60.322 55.000 0.00 0.00 39.33 4.40
1517 1532 1.344114 ACAACATGGCCATGAACCAAC 59.656 47.619 44.72 0.00 41.49 3.77
1518 1533 1.343789 CAACATGGCCATGAACCAACA 59.656 47.619 44.72 3.19 41.49 3.33
1519 1534 1.714541 ACATGGCCATGAACCAACAA 58.285 45.000 44.72 2.57 41.49 2.83
1534 1549 1.099689 AACAACTGGTGGTCCAAACG 58.900 50.000 0.00 0.00 43.81 3.60
1581 1596 1.351017 GGTCCTTCACAAGATCACCCA 59.649 52.381 0.00 0.00 0.00 4.51
1582 1597 2.427506 GTCCTTCACAAGATCACCCAC 58.572 52.381 0.00 0.00 0.00 4.61
1591 1606 4.334759 CACAAGATCACCCACAGATTCATC 59.665 45.833 0.00 0.00 0.00 2.92
1602 1617 4.999311 CCACAGATTCATCAGACTTCACAA 59.001 41.667 0.00 0.00 0.00 3.33
1603 1618 5.471116 CCACAGATTCATCAGACTTCACAAA 59.529 40.000 0.00 0.00 0.00 2.83
1611 1626 6.064060 TCATCAGACTTCACAAAAACCATCT 58.936 36.000 0.00 0.00 0.00 2.90
1621 1636 4.039004 CACAAAAACCATCTTCATCCCACA 59.961 41.667 0.00 0.00 0.00 4.17
1646 1661 3.732938 ACCTCAGGTGATGCCTCC 58.267 61.111 0.00 0.00 46.96 4.30
1647 1662 1.229625 ACCTCAGGTGATGCCTCCA 60.230 57.895 0.00 0.00 46.96 3.86
1660 1675 3.116096 TGCCTCCAGTTCTAGTACCAT 57.884 47.619 0.00 0.00 0.00 3.55
1661 1676 3.450904 TGCCTCCAGTTCTAGTACCATT 58.549 45.455 0.00 0.00 0.00 3.16
1673 1688 5.472148 TCTAGTACCATTAACACCACAACG 58.528 41.667 0.00 0.00 0.00 4.10
1676 1691 1.335496 ACCATTAACACCACAACGCAC 59.665 47.619 0.00 0.00 0.00 5.34
1678 1693 2.809119 CCATTAACACCACAACGCACTA 59.191 45.455 0.00 0.00 0.00 2.74
1708 1723 6.042143 CCACATTTTCCTATGCATTTACCAC 58.958 40.000 3.54 0.00 0.00 4.16
1710 1725 7.267128 CACATTTTCCTATGCATTTACCACAT 58.733 34.615 3.54 0.00 0.00 3.21
1716 1731 7.744087 TCCTATGCATTTACCACATATGTTC 57.256 36.000 3.54 0.00 0.00 3.18
1717 1732 7.517320 TCCTATGCATTTACCACATATGTTCT 58.483 34.615 3.54 0.00 0.00 3.01
1723 1738 6.073765 GCATTTACCACATATGTTCTAGTCCG 60.074 42.308 5.37 0.00 0.00 4.79
1724 1739 6.534475 TTTACCACATATGTTCTAGTCCGT 57.466 37.500 5.37 0.00 0.00 4.69
1737 1752 4.858850 TCTAGTCCGTACCATCACCTTTA 58.141 43.478 0.00 0.00 0.00 1.85
1744 1759 0.035439 ACCATCACCTTTAGCACCCG 60.035 55.000 0.00 0.00 0.00 5.28
1760 1775 2.890474 CGATTTGGCGTCCCTCCG 60.890 66.667 0.00 0.00 0.00 4.63
1765 1780 3.691342 TGGCGTCCCTCCGACAAG 61.691 66.667 0.00 0.00 44.25 3.16
1773 1788 1.674057 CCTCCGACAAGCAGTTCCT 59.326 57.895 0.00 0.00 0.00 3.36
1775 1790 0.671781 CTCCGACAAGCAGTTCCTGG 60.672 60.000 0.00 0.00 31.21 4.45
1779 1794 1.230324 GACAAGCAGTTCCTGGTCAC 58.770 55.000 0.00 0.00 41.59 3.67
1784 1799 2.453521 AGCAGTTCCTGGTCACGTATA 58.546 47.619 0.00 0.00 37.71 1.47
1788 1803 4.441634 GCAGTTCCTGGTCACGTATAAGAT 60.442 45.833 0.00 0.00 31.21 2.40
1792 1807 5.272283 TCCTGGTCACGTATAAGATTTCC 57.728 43.478 0.00 0.00 0.00 3.13
1812 1827 3.199946 TCCATCCACCTCTTTATCCACAC 59.800 47.826 0.00 0.00 0.00 3.82
1814 1829 2.915869 TCCACCTCTTTATCCACACCT 58.084 47.619 0.00 0.00 0.00 4.00
1815 1830 3.256704 TCCACCTCTTTATCCACACCTT 58.743 45.455 0.00 0.00 0.00 3.50
1831 1846 5.122396 CCACACCTTTAGAACTATGCAAGTC 59.878 44.000 0.00 0.00 37.50 3.01
1853 1868 6.489022 AGTCCTTAACACAAAATAGAACCACC 59.511 38.462 0.00 0.00 0.00 4.61
1865 1880 5.914898 ATAGAACCACCTTTTTACCATGC 57.085 39.130 0.00 0.00 0.00 4.06
1867 1882 3.964031 AGAACCACCTTTTTACCATGCAA 59.036 39.130 0.00 0.00 0.00 4.08
1870 1885 3.069443 ACCACCTTTTTACCATGCAAGTG 59.931 43.478 0.00 0.00 0.00 3.16
1879 1894 1.270412 ACCATGCAAGTGCCACAAATG 60.270 47.619 0.00 0.00 41.18 2.32
1882 1897 3.554544 CCATGCAAGTGCCACAAATGTTA 60.555 43.478 0.00 0.00 41.18 2.41
1884 1899 2.428530 TGCAAGTGCCACAAATGTTACA 59.571 40.909 0.00 0.00 41.18 2.41
1885 1900 3.052036 GCAAGTGCCACAAATGTTACAG 58.948 45.455 0.00 0.00 34.31 2.74
1886 1901 3.490761 GCAAGTGCCACAAATGTTACAGT 60.491 43.478 0.00 0.00 34.31 3.55
1887 1902 4.290155 CAAGTGCCACAAATGTTACAGTC 58.710 43.478 0.00 0.00 0.00 3.51
1888 1903 3.820557 AGTGCCACAAATGTTACAGTCT 58.179 40.909 0.00 0.00 0.00 3.24
1889 1904 4.968259 AGTGCCACAAATGTTACAGTCTA 58.032 39.130 0.00 0.00 0.00 2.59
1890 1905 4.755123 AGTGCCACAAATGTTACAGTCTAC 59.245 41.667 0.00 0.00 0.00 2.59
1891 1906 4.513692 GTGCCACAAATGTTACAGTCTACA 59.486 41.667 0.00 0.00 0.00 2.74
1892 1907 5.181245 GTGCCACAAATGTTACAGTCTACAT 59.819 40.000 0.00 0.00 36.58 2.29
1893 1908 5.411361 TGCCACAAATGTTACAGTCTACATC 59.589 40.000 2.55 0.00 34.04 3.06
1894 1909 5.411361 GCCACAAATGTTACAGTCTACATCA 59.589 40.000 2.55 0.00 34.04 3.07
1895 1910 6.620733 GCCACAAATGTTACAGTCTACATCAC 60.621 42.308 2.55 0.00 34.04 3.06
1896 1911 6.128282 CCACAAATGTTACAGTCTACATCACC 60.128 42.308 2.55 0.00 34.04 4.02
1897 1912 6.426633 CACAAATGTTACAGTCTACATCACCA 59.573 38.462 2.55 0.00 34.04 4.17
1898 1913 6.426937 ACAAATGTTACAGTCTACATCACCAC 59.573 38.462 2.55 0.00 34.04 4.16
1899 1914 4.530710 TGTTACAGTCTACATCACCACC 57.469 45.455 0.00 0.00 0.00 4.61
1900 1915 4.157246 TGTTACAGTCTACATCACCACCT 58.843 43.478 0.00 0.00 0.00 4.00
1901 1916 4.591498 TGTTACAGTCTACATCACCACCTT 59.409 41.667 0.00 0.00 0.00 3.50
1902 1917 5.071250 TGTTACAGTCTACATCACCACCTTT 59.929 40.000 0.00 0.00 0.00 3.11
1903 1918 6.268158 TGTTACAGTCTACATCACCACCTTTA 59.732 38.462 0.00 0.00 0.00 1.85
1904 1919 5.407407 ACAGTCTACATCACCACCTTTAG 57.593 43.478 0.00 0.00 0.00 1.85
1905 1920 4.184629 CAGTCTACATCACCACCTTTAGC 58.815 47.826 0.00 0.00 0.00 3.09
1906 1921 4.081420 CAGTCTACATCACCACCTTTAGCT 60.081 45.833 0.00 0.00 0.00 3.32
1907 1922 4.160626 AGTCTACATCACCACCTTTAGCTC 59.839 45.833 0.00 0.00 0.00 4.09
1912 1927 0.035056 CACCACCTTTAGCTCCCCAG 60.035 60.000 0.00 0.00 0.00 4.45
1918 1933 2.307980 ACCTTTAGCTCCCCAGTTTACC 59.692 50.000 0.00 0.00 0.00 2.85
1924 1939 0.535797 CTCCCCAGTTTACCTCCGTC 59.464 60.000 0.00 0.00 0.00 4.79
1930 1945 2.564062 CCAGTTTACCTCCGTCCTACAA 59.436 50.000 0.00 0.00 0.00 2.41
1979 1994 1.676006 CTCCACCACTTCAACCACAAC 59.324 52.381 0.00 0.00 0.00 3.32
1985 2000 3.443681 ACCACTTCAACCACAACTTCAAG 59.556 43.478 0.00 0.00 0.00 3.02
2056 2080 6.801539 TCAATTGTTGAGAACACTATGGAC 57.198 37.500 5.13 0.00 41.97 4.02
2057 2081 6.295249 TCAATTGTTGAGAACACTATGGACA 58.705 36.000 5.13 0.00 41.97 4.02
2067 2091 2.647299 ACACTATGGACAAATCCCCACA 59.353 45.455 0.00 0.00 45.59 4.17
2071 2095 1.993956 TGGACAAATCCCCACAGTTG 58.006 50.000 0.00 0.00 45.59 3.16
2097 2121 2.370849 ACTCCGGTGGTAATGACACTTT 59.629 45.455 8.63 0.00 38.83 2.66
2129 2153 6.427853 TGAATCATTCGGCTATGATAACTTGG 59.572 38.462 10.97 0.00 42.84 3.61
2159 2183 1.243342 TTTGGACCAGGCGCATGAAG 61.243 55.000 25.72 10.44 0.00 3.02
2254 2278 3.088532 GGTCAATAATGCACCACCAGAA 58.911 45.455 0.00 0.00 31.19 3.02
2256 2280 4.160252 GGTCAATAATGCACCACCAGAATT 59.840 41.667 0.00 0.00 31.19 2.17
2286 2310 6.405508 GGTGGGAATGATGATGATATTGATGC 60.406 42.308 0.00 0.00 0.00 3.91
2289 2313 8.056400 TGGGAATGATGATGATATTGATGCATA 58.944 33.333 0.00 0.00 0.00 3.14
2381 2411 8.492673 TCTATTAGGTGTCATTGTTGATTGTC 57.507 34.615 0.00 0.00 33.56 3.18
2382 2412 5.605564 TTAGGTGTCATTGTTGATTGTCG 57.394 39.130 0.00 0.00 33.56 4.35
2383 2413 3.738982 AGGTGTCATTGTTGATTGTCGA 58.261 40.909 0.00 0.00 33.56 4.20
2384 2414 4.326826 AGGTGTCATTGTTGATTGTCGAT 58.673 39.130 0.00 0.00 33.56 3.59
2386 2416 4.853196 GGTGTCATTGTTGATTGTCGATTG 59.147 41.667 0.00 0.00 33.56 2.67
2387 2417 5.451908 GTGTCATTGTTGATTGTCGATTGT 58.548 37.500 0.00 0.00 33.56 2.71
2388 2418 6.348132 GGTGTCATTGTTGATTGTCGATTGTA 60.348 38.462 0.00 0.00 33.56 2.41
2389 2419 6.519761 GTGTCATTGTTGATTGTCGATTGTAC 59.480 38.462 0.00 0.00 33.56 2.90
2390 2420 6.426633 TGTCATTGTTGATTGTCGATTGTACT 59.573 34.615 0.00 0.00 33.56 2.73
2391 2421 7.600752 TGTCATTGTTGATTGTCGATTGTACTA 59.399 33.333 0.00 0.00 33.56 1.82
2392 2422 8.604035 GTCATTGTTGATTGTCGATTGTACTAT 58.396 33.333 0.00 0.00 33.56 2.12
2393 2423 9.161629 TCATTGTTGATTGTCGATTGTACTATT 57.838 29.630 0.00 0.00 0.00 1.73
2396 2426 9.647797 TTGTTGATTGTCGATTGTACTATTAGT 57.352 29.630 1.30 1.30 0.00 2.24
2397 2427 9.647797 TGTTGATTGTCGATTGTACTATTAGTT 57.352 29.630 0.85 0.00 0.00 2.24
2398 2428 9.901724 GTTGATTGTCGATTGTACTATTAGTTG 57.098 33.333 0.85 0.00 0.00 3.16
2399 2429 9.647797 TTGATTGTCGATTGTACTATTAGTTGT 57.352 29.630 0.85 0.00 0.00 3.32
2400 2430 9.297586 TGATTGTCGATTGTACTATTAGTTGTC 57.702 33.333 0.85 0.00 0.00 3.18
2401 2431 9.297586 GATTGTCGATTGTACTATTAGTTGTCA 57.702 33.333 0.85 0.00 0.00 3.58
2402 2432 9.817809 ATTGTCGATTGTACTATTAGTTGTCAT 57.182 29.630 0.85 0.00 0.00 3.06
2403 2433 9.647797 TTGTCGATTGTACTATTAGTTGTCATT 57.352 29.630 0.85 0.00 0.00 2.57
2404 2434 9.083080 TGTCGATTGTACTATTAGTTGTCATTG 57.917 33.333 0.85 0.00 0.00 2.82
2405 2435 9.084164 GTCGATTGTACTATTAGTTGTCATTGT 57.916 33.333 0.85 0.00 0.00 2.71
2406 2436 9.297586 TCGATTGTACTATTAGTTGTCATTGTC 57.702 33.333 0.85 0.33 0.00 3.18
2407 2437 8.259872 CGATTGTACTATTAGTTGTCATTGTCG 58.740 37.037 0.85 6.73 0.00 4.35
2408 2438 9.297586 GATTGTACTATTAGTTGTCATTGTCGA 57.702 33.333 0.85 0.00 0.00 4.20
2409 2439 9.817809 ATTGTACTATTAGTTGTCATTGTCGAT 57.182 29.630 0.85 0.00 0.00 3.59
2410 2440 9.647797 TTGTACTATTAGTTGTCATTGTCGATT 57.352 29.630 0.85 0.00 0.00 3.34
2411 2441 9.083080 TGTACTATTAGTTGTCATTGTCGATTG 57.917 33.333 0.85 0.00 0.00 2.67
2412 2442 9.084164 GTACTATTAGTTGTCATTGTCGATTGT 57.916 33.333 0.85 0.00 0.00 2.71
2414 2444 9.084164 ACTATTAGTTGTCATTGTCGATTGTAC 57.916 33.333 0.00 0.00 0.00 2.90
2415 2445 9.302345 CTATTAGTTGTCATTGTCGATTGTACT 57.698 33.333 0.00 0.00 0.00 2.73
2416 2446 7.956420 TTAGTTGTCATTGTCGATTGTACTT 57.044 32.000 0.00 0.00 0.00 2.24
2417 2447 6.467723 AGTTGTCATTGTCGATTGTACTTC 57.532 37.500 0.00 0.00 0.00 3.01
2421 2451 8.492748 GTTGTCATTGTCGATTGTACTTCTTTA 58.507 33.333 0.00 0.00 0.00 1.85
2431 2461 9.871238 TCGATTGTACTTCTTTATTAAGCTTCT 57.129 29.630 0.00 0.00 0.00 2.85
2441 2471 6.891908 TCTTTATTAAGCTTCTTGGAGGCAAT 59.108 34.615 0.00 0.00 37.11 3.56
2485 2515 7.945134 AGGGCATTATGTCATGAAGTTTATTC 58.055 34.615 0.00 0.00 0.00 1.75
2495 2525 9.460019 TGTCATGAAGTTTATTCCAATATGACA 57.540 29.630 10.97 10.97 45.36 3.58
2530 2560 6.773976 ATGTTTGGAGTTCTTCTTGTTGAA 57.226 33.333 0.00 0.00 0.00 2.69
2541 2571 9.832445 AGTTCTTCTTGTTGAATGAGTAGTTAA 57.168 29.630 0.00 0.00 33.71 2.01
2600 2632 7.335422 GCTTTCTCTATTGATGAACAAGAGGAA 59.665 37.037 0.00 3.91 44.80 3.36
2758 2795 6.210385 AGCCACAAATGATAACAACCAATGTA 59.790 34.615 0.00 0.00 42.99 2.29
2760 2797 7.548780 GCCACAAATGATAACAACCAATGTAAT 59.451 33.333 0.00 0.00 42.99 1.89
2796 2833 6.523840 ACAATGGTAAGTTGAAAATGCACAT 58.476 32.000 0.00 0.00 0.00 3.21
2797 2834 6.424509 ACAATGGTAAGTTGAAAATGCACATG 59.575 34.615 0.00 0.00 0.00 3.21
2822 2859 3.485947 TGTGAGAACAAAAGTGTGTGC 57.514 42.857 0.00 0.00 38.27 4.57
2828 2865 4.844267 AGAACAAAAGTGTGTGCGAATAC 58.156 39.130 0.00 0.00 38.27 1.89
2842 2879 1.141645 GAATACGCAACCACACGTGA 58.858 50.000 25.01 0.00 43.44 4.35
2850 2887 2.850321 CAACCACACGTGAATATGCAC 58.150 47.619 25.01 3.43 35.46 4.57
2856 2893 1.351707 CGTGAATATGCACCCACGC 59.648 57.895 8.32 3.52 44.24 5.34
2887 2924 5.682049 GCGACCGCAACATTACTATATAG 57.318 43.478 9.73 8.27 41.49 1.31
2888 2925 4.031426 GCGACCGCAACATTACTATATAGC 59.969 45.833 9.78 0.00 41.49 2.97
2889 2926 5.158494 CGACCGCAACATTACTATATAGCA 58.842 41.667 9.78 0.00 0.00 3.49
2890 2927 5.805486 CGACCGCAACATTACTATATAGCAT 59.195 40.000 9.78 0.00 0.00 3.79
2891 2928 6.237569 CGACCGCAACATTACTATATAGCATG 60.238 42.308 9.78 13.64 0.00 4.06
2892 2929 6.464222 ACCGCAACATTACTATATAGCATGT 58.536 36.000 17.07 17.07 34.00 3.21
2893 2930 7.608153 ACCGCAACATTACTATATAGCATGTA 58.392 34.615 20.73 3.02 32.91 2.29
2894 2931 7.544566 ACCGCAACATTACTATATAGCATGTAC 59.455 37.037 20.73 16.48 32.91 2.90
2895 2932 7.010183 CCGCAACATTACTATATAGCATGTACC 59.990 40.741 20.73 15.49 32.91 3.34
2896 2933 7.010183 CGCAACATTACTATATAGCATGTACCC 59.990 40.741 20.73 13.90 32.91 3.69
2897 2934 7.822334 GCAACATTACTATATAGCATGTACCCA 59.178 37.037 20.73 0.00 32.91 4.51
2898 2935 9.151471 CAACATTACTATATAGCATGTACCCAC 57.849 37.037 20.73 0.00 32.91 4.61
2899 2936 8.430573 ACATTACTATATAGCATGTACCCACA 57.569 34.615 19.70 0.00 39.52 4.17
2900 2937 8.531982 ACATTACTATATAGCATGTACCCACAG 58.468 37.037 19.70 0.00 38.30 3.66
2901 2938 5.407407 ACTATATAGCATGTACCCACAGC 57.593 43.478 9.78 0.00 38.30 4.40
2902 2939 5.087323 ACTATATAGCATGTACCCACAGCT 58.913 41.667 9.78 0.00 40.20 4.24
2903 2940 6.253758 ACTATATAGCATGTACCCACAGCTA 58.746 40.000 9.78 0.00 41.41 3.32
2904 2941 3.753294 ATAGCATGTACCCACAGCTAC 57.247 47.619 0.00 0.00 40.72 3.58
2905 2942 0.541863 AGCATGTACCCACAGCTACC 59.458 55.000 0.00 0.00 38.30 3.18
2906 2943 0.251916 GCATGTACCCACAGCTACCA 59.748 55.000 0.00 0.00 38.30 3.25
2907 2944 1.339631 GCATGTACCCACAGCTACCAA 60.340 52.381 0.00 0.00 38.30 3.67
2908 2945 2.356135 CATGTACCCACAGCTACCAAC 58.644 52.381 0.00 0.00 38.30 3.77
2909 2946 1.425694 TGTACCCACAGCTACCAACA 58.574 50.000 0.00 0.00 0.00 3.33
2910 2947 1.982226 TGTACCCACAGCTACCAACAT 59.018 47.619 0.00 0.00 0.00 2.71
2911 2948 3.174779 TGTACCCACAGCTACCAACATA 58.825 45.455 0.00 0.00 0.00 2.29
2912 2949 3.583526 TGTACCCACAGCTACCAACATAA 59.416 43.478 0.00 0.00 0.00 1.90
2913 2950 3.799432 ACCCACAGCTACCAACATAAA 57.201 42.857 0.00 0.00 0.00 1.40
2914 2951 4.107127 ACCCACAGCTACCAACATAAAA 57.893 40.909 0.00 0.00 0.00 1.52
2915 2952 4.672899 ACCCACAGCTACCAACATAAAAT 58.327 39.130 0.00 0.00 0.00 1.82
2916 2953 5.822204 ACCCACAGCTACCAACATAAAATA 58.178 37.500 0.00 0.00 0.00 1.40
2917 2954 5.650703 ACCCACAGCTACCAACATAAAATAC 59.349 40.000 0.00 0.00 0.00 1.89
2918 2955 5.220777 CCCACAGCTACCAACATAAAATACG 60.221 44.000 0.00 0.00 0.00 3.06
2919 2956 5.263185 CACAGCTACCAACATAAAATACGC 58.737 41.667 0.00 0.00 0.00 4.42
2920 2957 4.938832 ACAGCTACCAACATAAAATACGCA 59.061 37.500 0.00 0.00 0.00 5.24
2921 2958 5.588648 ACAGCTACCAACATAAAATACGCAT 59.411 36.000 0.00 0.00 0.00 4.73
2922 2959 6.136071 CAGCTACCAACATAAAATACGCATC 58.864 40.000 0.00 0.00 0.00 3.91
2923 2960 5.238650 AGCTACCAACATAAAATACGCATCC 59.761 40.000 0.00 0.00 0.00 3.51
2924 2961 4.545823 ACCAACATAAAATACGCATCCG 57.454 40.909 0.00 0.00 41.14 4.18
2925 2962 3.242936 ACCAACATAAAATACGCATCCGC 60.243 43.478 0.00 0.00 38.22 5.54
2926 2963 3.242903 CCAACATAAAATACGCATCCGCA 60.243 43.478 0.00 0.00 38.40 5.69
2927 2964 4.536065 CAACATAAAATACGCATCCGCAT 58.464 39.130 0.00 0.00 38.40 4.73
2928 2965 4.145876 ACATAAAATACGCATCCGCATG 57.854 40.909 0.00 0.00 38.40 4.06
2929 2966 3.563808 ACATAAAATACGCATCCGCATGT 59.436 39.130 0.00 0.00 38.40 3.21
2930 2967 2.473530 AAAATACGCATCCGCATGTG 57.526 45.000 0.00 0.00 44.86 3.21
2931 2968 0.662619 AAATACGCATCCGCATGTGG 59.337 50.000 19.75 19.75 43.79 4.17
2932 2969 0.179059 AATACGCATCCGCATGTGGA 60.179 50.000 29.37 29.37 43.79 4.02
2933 2970 0.880278 ATACGCATCCGCATGTGGAC 60.880 55.000 29.79 17.03 43.79 4.02
2934 2971 2.232298 TACGCATCCGCATGTGGACA 62.232 55.000 29.79 9.81 43.79 4.02
2935 2972 2.793946 GCATCCGCATGTGGACAC 59.206 61.111 29.79 20.17 41.85 3.67
2936 2973 2.039974 GCATCCGCATGTGGACACA 61.040 57.895 29.79 8.61 46.44 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.349568 TGGTCATATATACAGGAGTACATGAC 57.650 38.462 0.00 13.19 41.20 3.06
25 26 1.289160 TATTGCTTGAGCCTCCTGGT 58.711 50.000 0.00 0.00 41.18 4.00
29 30 3.242870 CGATGTTTATTGCTTGAGCCTCC 60.243 47.826 0.00 0.00 41.18 4.30
42 43 5.301805 GGGGATTGATGGAAACGATGTTTAT 59.698 40.000 0.00 0.00 0.00 1.40
82 83 8.311395 TGGCATCTAAGAGAGGGTATATATTG 57.689 38.462 0.00 0.00 0.00 1.90
93 96 9.823647 TTCTAAATACTTTGGCATCTAAGAGAG 57.176 33.333 4.50 0.00 31.73 3.20
103 106 5.260424 TCATGGCTTCTAAATACTTTGGCA 58.740 37.500 0.00 0.00 0.00 4.92
104 107 5.835113 TCATGGCTTCTAAATACTTTGGC 57.165 39.130 0.00 0.00 0.00 4.52
107 110 8.757982 ACATGATCATGGCTTCTAAATACTTT 57.242 30.769 33.31 9.15 42.91 2.66
123 126 9.911788 AGTGTTATTTCTTCCTAACATGATCAT 57.088 29.630 1.18 1.18 39.34 2.45
151 155 5.301555 TGTCATGTGTTCCGACAATCTTAA 58.698 37.500 0.00 0.00 36.75 1.85
254 258 6.901081 TGTTTCTCTCACTCTCTATGTGAA 57.099 37.500 0.00 0.00 42.85 3.18
258 262 7.156876 AGACTTGTTTCTCTCACTCTCTATG 57.843 40.000 0.00 0.00 0.00 2.23
262 266 6.569179 AGTAGACTTGTTTCTCTCACTCTC 57.431 41.667 0.00 0.00 0.00 3.20
263 267 8.644374 ATTAGTAGACTTGTTTCTCTCACTCT 57.356 34.615 0.00 0.00 0.00 3.24
266 270 9.356433 GGTTATTAGTAGACTTGTTTCTCTCAC 57.644 37.037 0.00 0.00 0.00 3.51
267 271 9.085645 TGGTTATTAGTAGACTTGTTTCTCTCA 57.914 33.333 0.00 0.00 0.00 3.27
272 276 9.871238 TCTCATGGTTATTAGTAGACTTGTTTC 57.129 33.333 0.00 0.00 0.00 2.78
311 315 8.365399 TCTCTTTTCAATATGTAGTATTGCCG 57.635 34.615 3.52 0.00 46.06 5.69
346 350 9.208022 TCTCATAGACAAGTCAAACAATTACTG 57.792 33.333 2.72 0.00 0.00 2.74
431 435 6.533012 CGTAGCCATCCAATCTTATATGTCTG 59.467 42.308 0.00 0.00 0.00 3.51
432 436 6.437477 TCGTAGCCATCCAATCTTATATGTCT 59.563 38.462 0.00 0.00 0.00 3.41
459 463 4.320023 TGAGTTAGAATTTGGTGCGCTTA 58.680 39.130 9.73 0.00 0.00 3.09
460 464 3.146066 TGAGTTAGAATTTGGTGCGCTT 58.854 40.909 9.73 0.00 0.00 4.68
473 477 7.686859 GCAACCACATCCATAGTATGAGTTAGA 60.687 40.741 11.91 0.36 0.00 2.10
494 498 9.862585 CAATTCTTTTTGTTATTAAGTGCAACC 57.137 29.630 0.00 0.00 37.80 3.77
545 549 4.789012 TCCACATCCAGCAATCTTTTTC 57.211 40.909 0.00 0.00 0.00 2.29
552 556 3.021695 CAGTTCATCCACATCCAGCAAT 58.978 45.455 0.00 0.00 0.00 3.56
556 560 3.339253 TGTCAGTTCATCCACATCCAG 57.661 47.619 0.00 0.00 0.00 3.86
573 577 2.408487 CGTACGCGTGCATCATTATGTC 60.408 50.000 26.55 0.00 35.38 3.06
576 580 2.128367 TCGTACGCGTGCATCATTAT 57.872 45.000 26.55 0.00 39.49 1.28
584 588 2.981805 TCCAAATATATCGTACGCGTGC 59.018 45.455 24.59 21.11 39.49 5.34
587 591 7.445900 ACATTATCCAAATATATCGTACGCG 57.554 36.000 11.24 3.53 39.92 6.01
588 592 9.292846 TGTACATTATCCAAATATATCGTACGC 57.707 33.333 11.24 0.00 29.93 4.42
592 596 9.135843 CACGTGTACATTATCCAAATATATCGT 57.864 33.333 7.58 0.00 0.00 3.73
593 597 9.135843 ACACGTGTACATTATCCAAATATATCG 57.864 33.333 21.98 0.00 0.00 2.92
597 601 9.990360 TCATACACGTGTACATTATCCAAATAT 57.010 29.630 29.54 7.74 32.72 1.28
598 602 9.990360 ATCATACACGTGTACATTATCCAAATA 57.010 29.630 29.54 5.49 32.72 1.40
600 604 9.990360 ATATCATACACGTGTACATTATCCAAA 57.010 29.630 29.54 6.19 32.72 3.28
613 625 6.017523 TGTTGGCCAAATATATCATACACGTG 60.018 38.462 22.47 15.48 0.00 4.49
648 660 7.660030 ATTAACAAATGCCTAACTTATGCCT 57.340 32.000 0.00 0.00 0.00 4.75
681 693 5.122396 ACCGTCAAGTCTTTAATCAGCAATC 59.878 40.000 0.00 0.00 0.00 2.67
688 700 5.934935 TCCAAACCGTCAAGTCTTTAATC 57.065 39.130 0.00 0.00 0.00 1.75
721 733 7.928873 AGGATCCAAAGTTACATTCCTTTCTA 58.071 34.615 15.82 0.00 0.00 2.10
760 772 6.875076 AGTTAGTGTACATCCTTATCCACAC 58.125 40.000 0.00 0.00 37.21 3.82
780 792 7.442969 ACAATTCACGGTTTACATCAGAAGTTA 59.557 33.333 0.00 0.00 0.00 2.24
822 834 3.128242 CACCATCTCCAGAAACATGAAGC 59.872 47.826 0.00 0.00 0.00 3.86
909 922 1.025812 CCGGTTGTTGTTGGCTAACA 58.974 50.000 12.09 12.09 44.66 2.41
910 923 1.310904 TCCGGTTGTTGTTGGCTAAC 58.689 50.000 5.91 5.91 37.32 2.34
926 939 9.765795 AAGTATCTACCAAAAGATATCTTTCCG 57.234 33.333 26.83 21.32 44.69 4.30
960 975 4.473477 AGGACTTACAACTACAGATGGC 57.527 45.455 0.00 0.00 0.00 4.40
965 980 7.760340 GGATAACTGAAGGACTTACAACTACAG 59.240 40.741 0.00 0.00 0.00 2.74
972 987 7.685481 TCAAATGGATAACTGAAGGACTTACA 58.315 34.615 0.00 0.00 0.00 2.41
974 989 7.918076 ACTCAAATGGATAACTGAAGGACTTA 58.082 34.615 0.00 0.00 0.00 2.24
979 994 6.769822 AGCATACTCAAATGGATAACTGAAGG 59.230 38.462 0.00 0.00 0.00 3.46
980 995 7.496920 TCAGCATACTCAAATGGATAACTGAAG 59.503 37.037 0.00 0.00 0.00 3.02
1019 1034 1.488705 AATGCGACAGACCCCCAAGA 61.489 55.000 0.00 0.00 0.00 3.02
1020 1035 1.002134 AATGCGACAGACCCCCAAG 60.002 57.895 0.00 0.00 0.00 3.61
1022 1037 1.773856 TTCAATGCGACAGACCCCCA 61.774 55.000 0.00 0.00 0.00 4.96
1026 1041 1.529438 TCGTTTTCAATGCGACAGACC 59.471 47.619 0.00 0.00 0.00 3.85
1061 1076 3.276846 GCCGCTTGGTGAACGTGT 61.277 61.111 0.00 0.00 34.16 4.49
1062 1077 2.616330 ATGCCGCTTGGTGAACGTG 61.616 57.895 0.00 0.00 34.16 4.49
1063 1078 2.281484 ATGCCGCTTGGTGAACGT 60.281 55.556 0.00 0.00 34.16 3.99
1089 1104 4.532834 AGAGGTTACTGGCACTTTTGAAA 58.467 39.130 0.00 0.00 0.00 2.69
1101 1116 1.133407 GTGAGAGCGGAGAGGTTACTG 59.867 57.143 0.00 0.00 0.00 2.74
1122 1137 4.643387 ACAGCAACCCTCACGCCC 62.643 66.667 0.00 0.00 0.00 6.13
1173 1188 1.074084 TCCACTAACGGCATCCCAAAA 59.926 47.619 0.00 0.00 0.00 2.44
1181 1196 0.402504 AATGGGTTCCACTAACGGCA 59.597 50.000 0.00 0.00 39.13 5.69
1192 1207 5.011023 ACAGGAAAGAATCAACAATGGGTTC 59.989 40.000 0.00 0.00 37.72 3.62
1231 1246 0.172578 TCATCGACAAGCGGTTCGAT 59.827 50.000 16.20 16.20 44.72 3.59
1236 1251 1.148310 CTTGTTCATCGACAAGCGGT 58.852 50.000 5.00 0.00 46.84 5.68
1271 1286 2.167281 GTCACCTCTCTCTGCAGCAATA 59.833 50.000 9.47 0.00 0.00 1.90
1276 1291 2.023673 CCTAGTCACCTCTCTCTGCAG 58.976 57.143 7.63 7.63 0.00 4.41
1284 1299 2.696526 TGTCCAACCTAGTCACCTCT 57.303 50.000 0.00 0.00 0.00 3.69
1291 1306 3.370953 GCATTCTCCATGTCCAACCTAGT 60.371 47.826 0.00 0.00 34.98 2.57
1313 1328 4.268884 GGTTTGCTCTCGTATCTAGCTTTG 59.731 45.833 0.00 0.00 37.16 2.77
1316 1331 3.292460 AGGTTTGCTCTCGTATCTAGCT 58.708 45.455 0.00 0.00 37.16 3.32
1341 1356 3.427233 GGATCTTCTTGATGTGTTGCAGC 60.427 47.826 0.00 0.00 35.14 5.25
1344 1359 4.730657 CTTGGATCTTCTTGATGTGTTGC 58.269 43.478 0.00 0.00 35.14 4.17
1366 1381 1.527433 GGCAACCTTGGGTTCTGAGC 61.527 60.000 0.00 0.61 43.05 4.26
1378 1393 6.131961 AGAAGATATTATTTGCTGGCAACCT 58.868 36.000 7.56 1.70 35.46 3.50
1381 1396 6.128486 TGGAGAAGATATTATTTGCTGGCAA 58.872 36.000 3.72 3.72 0.00 4.52
1409 1424 7.404671 AGGTCTTCAAGACTAAGATCTTCTC 57.595 40.000 17.22 8.03 40.71 2.87
1472 1487 2.357009 GGAGGCAGACGTCGTCTAATTA 59.643 50.000 26.54 0.00 41.37 1.40
1486 1501 1.742761 CCATGTTGTAGTGGAGGCAG 58.257 55.000 0.00 0.00 37.72 4.85
1534 1549 2.237066 GCAACCAGTTTTGCCGCAC 61.237 57.895 0.00 0.00 45.22 5.34
1560 1575 1.351017 GGGTGATCTTGTGAAGGACCA 59.649 52.381 0.00 0.00 0.00 4.02
1581 1596 7.420800 GTTTTTGTGAAGTCTGATGAATCTGT 58.579 34.615 0.00 0.00 0.00 3.41
1582 1597 6.860023 GGTTTTTGTGAAGTCTGATGAATCTG 59.140 38.462 0.00 0.00 0.00 2.90
1591 1606 6.135290 TGAAGATGGTTTTTGTGAAGTCTG 57.865 37.500 0.00 0.00 0.00 3.51
1602 1617 5.336102 AGATTGTGGGATGAAGATGGTTTT 58.664 37.500 0.00 0.00 0.00 2.43
1603 1618 4.939255 AGATTGTGGGATGAAGATGGTTT 58.061 39.130 0.00 0.00 0.00 3.27
1611 1626 2.649312 AGGTGGAAGATTGTGGGATGAA 59.351 45.455 0.00 0.00 0.00 2.57
1645 1660 5.873164 GTGGTGTTAATGGTACTAGAACTGG 59.127 44.000 0.00 0.00 0.00 4.00
1646 1661 6.460781 TGTGGTGTTAATGGTACTAGAACTG 58.539 40.000 0.00 0.00 0.00 3.16
1647 1662 6.675413 TGTGGTGTTAATGGTACTAGAACT 57.325 37.500 0.00 0.00 0.00 3.01
1660 1675 2.809119 CCATAGTGCGTTGTGGTGTTAA 59.191 45.455 0.00 0.00 0.00 2.01
1661 1676 2.037381 TCCATAGTGCGTTGTGGTGTTA 59.963 45.455 3.56 0.00 33.47 2.41
1673 1688 3.763897 AGGAAAATGTGGTTCCATAGTGC 59.236 43.478 6.01 0.00 46.01 4.40
1676 1691 5.593909 TGCATAGGAAAATGTGGTTCCATAG 59.406 40.000 6.01 0.00 46.01 2.23
1678 1693 4.352009 TGCATAGGAAAATGTGGTTCCAT 58.648 39.130 6.01 0.00 46.01 3.41
1708 1723 6.150318 GTGATGGTACGGACTAGAACATATG 58.850 44.000 0.00 0.00 0.00 1.78
1710 1725 4.581824 GGTGATGGTACGGACTAGAACATA 59.418 45.833 0.00 0.00 0.00 2.29
1716 1731 4.499357 GCTAAAGGTGATGGTACGGACTAG 60.499 50.000 0.00 0.00 0.00 2.57
1717 1732 3.382546 GCTAAAGGTGATGGTACGGACTA 59.617 47.826 0.00 0.00 0.00 2.59
1723 1738 2.640184 GGGTGCTAAAGGTGATGGTAC 58.360 52.381 0.00 0.00 0.00 3.34
1724 1739 1.208535 CGGGTGCTAAAGGTGATGGTA 59.791 52.381 0.00 0.00 0.00 3.25
1737 1752 2.746277 GACGCCAAATCGGGTGCT 60.746 61.111 0.00 0.00 42.27 4.40
1773 1788 5.129650 TGGATGGAAATCTTATACGTGACCA 59.870 40.000 0.00 0.00 0.00 4.02
1775 1790 5.465724 GGTGGATGGAAATCTTATACGTGAC 59.534 44.000 0.00 0.00 0.00 3.67
1779 1794 6.102897 AGAGGTGGATGGAAATCTTATACG 57.897 41.667 0.00 0.00 0.00 3.06
1784 1799 6.068853 TGGATAAAGAGGTGGATGGAAATCTT 60.069 38.462 0.00 0.00 0.00 2.40
1788 1803 4.290985 TGTGGATAAAGAGGTGGATGGAAA 59.709 41.667 0.00 0.00 0.00 3.13
1792 1807 3.200825 AGGTGTGGATAAAGAGGTGGATG 59.799 47.826 0.00 0.00 0.00 3.51
1806 1821 4.901197 TGCATAGTTCTAAAGGTGTGGA 57.099 40.909 0.00 0.00 0.00 4.02
1812 1827 7.606456 TGTTAAGGACTTGCATAGTTCTAAAGG 59.394 37.037 9.41 0.00 42.19 3.11
1814 1829 7.934665 TGTGTTAAGGACTTGCATAGTTCTAAA 59.065 33.333 9.41 1.27 42.19 1.85
1815 1830 7.446769 TGTGTTAAGGACTTGCATAGTTCTAA 58.553 34.615 9.41 4.04 42.19 2.10
1831 1846 6.894339 AGGTGGTTCTATTTTGTGTTAAGG 57.106 37.500 0.00 0.00 0.00 2.69
1853 1868 3.059166 GTGGCACTTGCATGGTAAAAAG 58.941 45.455 11.13 0.00 44.36 2.27
1865 1880 4.036734 AGACTGTAACATTTGTGGCACTTG 59.963 41.667 19.83 15.32 0.00 3.16
1867 1882 3.820557 AGACTGTAACATTTGTGGCACT 58.179 40.909 19.83 0.00 0.00 4.40
1870 1885 5.411361 TGATGTAGACTGTAACATTTGTGGC 59.589 40.000 8.99 0.00 36.48 5.01
1879 1894 4.803098 AGGTGGTGATGTAGACTGTAAC 57.197 45.455 0.00 0.00 0.00 2.50
1882 1897 4.322801 GCTAAAGGTGGTGATGTAGACTGT 60.323 45.833 0.00 0.00 0.00 3.55
1884 1899 4.097418 AGCTAAAGGTGGTGATGTAGACT 58.903 43.478 0.00 0.00 0.00 3.24
1885 1900 4.434520 GAGCTAAAGGTGGTGATGTAGAC 58.565 47.826 0.00 0.00 0.00 2.59
1886 1901 3.451178 GGAGCTAAAGGTGGTGATGTAGA 59.549 47.826 0.00 0.00 0.00 2.59
1887 1902 3.432326 GGGAGCTAAAGGTGGTGATGTAG 60.432 52.174 0.00 0.00 0.00 2.74
1888 1903 2.504175 GGGAGCTAAAGGTGGTGATGTA 59.496 50.000 0.00 0.00 0.00 2.29
1889 1904 1.282157 GGGAGCTAAAGGTGGTGATGT 59.718 52.381 0.00 0.00 0.00 3.06
1890 1905 1.408822 GGGGAGCTAAAGGTGGTGATG 60.409 57.143 0.00 0.00 0.00 3.07
1891 1906 0.919710 GGGGAGCTAAAGGTGGTGAT 59.080 55.000 0.00 0.00 0.00 3.06
1892 1907 0.474854 TGGGGAGCTAAAGGTGGTGA 60.475 55.000 0.00 0.00 0.00 4.02
1893 1908 0.035056 CTGGGGAGCTAAAGGTGGTG 60.035 60.000 0.00 0.00 0.00 4.17
1894 1909 0.475828 ACTGGGGAGCTAAAGGTGGT 60.476 55.000 0.00 0.00 0.00 4.16
1895 1910 0.698818 AACTGGGGAGCTAAAGGTGG 59.301 55.000 0.00 0.00 0.00 4.61
1896 1911 2.586648 AAACTGGGGAGCTAAAGGTG 57.413 50.000 0.00 0.00 0.00 4.00
1897 1912 2.307980 GGTAAACTGGGGAGCTAAAGGT 59.692 50.000 0.00 0.00 0.00 3.50
1898 1913 2.576648 AGGTAAACTGGGGAGCTAAAGG 59.423 50.000 0.00 0.00 0.00 3.11
1899 1914 3.370633 GGAGGTAAACTGGGGAGCTAAAG 60.371 52.174 0.00 0.00 0.00 1.85
1900 1915 2.574824 GGAGGTAAACTGGGGAGCTAAA 59.425 50.000 0.00 0.00 0.00 1.85
1901 1916 2.193993 GGAGGTAAACTGGGGAGCTAA 58.806 52.381 0.00 0.00 0.00 3.09
1902 1917 1.875488 GGAGGTAAACTGGGGAGCTA 58.125 55.000 0.00 0.00 0.00 3.32
1903 1918 1.265454 CGGAGGTAAACTGGGGAGCT 61.265 60.000 0.00 0.00 0.00 4.09
1904 1919 1.221021 CGGAGGTAAACTGGGGAGC 59.779 63.158 0.00 0.00 0.00 4.70
1905 1920 0.535797 GACGGAGGTAAACTGGGGAG 59.464 60.000 0.00 0.00 0.00 4.30
1906 1921 0.906282 GGACGGAGGTAAACTGGGGA 60.906 60.000 0.00 0.00 0.00 4.81
1907 1922 0.908180 AGGACGGAGGTAAACTGGGG 60.908 60.000 0.00 0.00 0.00 4.96
1912 1927 4.081807 ACTGATTGTAGGACGGAGGTAAAC 60.082 45.833 0.00 0.00 0.00 2.01
1930 1945 3.006110 CCTTTGCATGGTCAACAACTGAT 59.994 43.478 0.00 0.00 36.14 2.90
1999 2014 0.961019 TGTTCTGCAATGGCCTTGTC 59.039 50.000 3.32 3.76 40.13 3.18
2001 2016 1.068895 TGTTGTTCTGCAATGGCCTTG 59.931 47.619 3.32 7.45 39.55 3.61
2002 2017 1.412079 TGTTGTTCTGCAATGGCCTT 58.588 45.000 3.32 0.00 39.55 4.35
2004 2019 1.273048 TCATGTTGTTCTGCAATGGCC 59.727 47.619 0.00 0.00 39.55 5.36
2051 2075 2.158325 ACAACTGTGGGGATTTGTCCAT 60.158 45.455 0.00 0.00 35.28 3.41
2056 2080 4.398319 AGTAGAACAACTGTGGGGATTTG 58.602 43.478 0.00 0.00 0.00 2.32
2057 2081 4.506802 GGAGTAGAACAACTGTGGGGATTT 60.507 45.833 0.00 0.00 0.00 2.17
2067 2091 1.713297 ACCACCGGAGTAGAACAACT 58.287 50.000 9.46 0.00 0.00 3.16
2071 2095 3.194116 TGTCATTACCACCGGAGTAGAAC 59.806 47.826 9.46 9.18 0.00 3.01
2097 2121 3.497103 AGCCGAATGATTCATGGATGA 57.503 42.857 5.95 0.00 34.44 2.92
2159 2183 6.099845 TCCAAGTAAGAATCCATCCCTAGAAC 59.900 42.308 0.00 0.00 0.00 3.01
2215 2239 4.525996 TGACCCACTAATCACATTCCATG 58.474 43.478 0.00 0.00 0.00 3.66
2226 2250 4.644685 GTGGTGCATTATTGACCCACTAAT 59.355 41.667 10.67 0.00 39.36 1.73
2228 2252 3.616219 GTGGTGCATTATTGACCCACTA 58.384 45.455 10.67 0.00 39.36 2.74
2235 2259 5.999205 AAATTCTGGTGGTGCATTATTGA 57.001 34.783 0.00 0.00 0.00 2.57
2286 2310 9.838339 ACATCTAAAGTAGTCCTCCAAATTATG 57.162 33.333 0.00 0.00 0.00 1.90
2289 2313 7.042335 CGACATCTAAAGTAGTCCTCCAAATT 58.958 38.462 0.00 0.00 0.00 1.82
2294 2318 3.952967 ACCGACATCTAAAGTAGTCCTCC 59.047 47.826 0.00 0.00 0.00 4.30
2358 2388 7.100409 TCGACAATCAACAATGACACCTAATA 58.900 34.615 0.00 0.00 38.69 0.98
2374 2404 9.297586 GACAACTAATAGTACAATCGACAATCA 57.702 33.333 0.00 0.00 0.00 2.57
2381 2411 8.259872 CGACAATGACAACTAATAGTACAATCG 58.740 37.037 0.00 3.83 0.00 3.34
2382 2412 9.297586 TCGACAATGACAACTAATAGTACAATC 57.702 33.333 0.00 0.00 0.00 2.67
2383 2413 9.817809 ATCGACAATGACAACTAATAGTACAAT 57.182 29.630 0.00 0.00 0.00 2.71
2384 2414 9.647797 AATCGACAATGACAACTAATAGTACAA 57.352 29.630 0.00 0.00 0.00 2.41
2386 2416 9.084164 ACAATCGACAATGACAACTAATAGTAC 57.916 33.333 0.00 0.00 0.00 2.73
2388 2418 9.084164 GTACAATCGACAATGACAACTAATAGT 57.916 33.333 0.00 0.00 0.00 2.12
2389 2419 9.302345 AGTACAATCGACAATGACAACTAATAG 57.698 33.333 0.00 0.00 0.00 1.73
2390 2420 9.647797 AAGTACAATCGACAATGACAACTAATA 57.352 29.630 0.00 0.00 0.00 0.98
2391 2421 8.547967 AAGTACAATCGACAATGACAACTAAT 57.452 30.769 0.00 0.00 0.00 1.73
2392 2422 7.870954 AGAAGTACAATCGACAATGACAACTAA 59.129 33.333 0.00 0.00 0.00 2.24
2393 2423 7.375834 AGAAGTACAATCGACAATGACAACTA 58.624 34.615 0.00 0.00 0.00 2.24
2394 2424 6.223852 AGAAGTACAATCGACAATGACAACT 58.776 36.000 0.00 0.00 0.00 3.16
2395 2425 6.467723 AGAAGTACAATCGACAATGACAAC 57.532 37.500 0.00 0.00 0.00 3.32
2396 2426 7.490962 AAAGAAGTACAATCGACAATGACAA 57.509 32.000 0.00 0.00 0.00 3.18
2397 2427 8.771920 ATAAAGAAGTACAATCGACAATGACA 57.228 30.769 0.00 0.00 0.00 3.58
2402 2432 9.431887 AGCTTAATAAAGAAGTACAATCGACAA 57.568 29.630 0.00 0.00 34.37 3.18
2403 2433 8.997621 AGCTTAATAAAGAAGTACAATCGACA 57.002 30.769 0.00 0.00 34.37 4.35
2404 2434 9.903185 GAAGCTTAATAAAGAAGTACAATCGAC 57.097 33.333 0.00 0.00 34.37 4.20
2405 2435 9.871238 AGAAGCTTAATAAAGAAGTACAATCGA 57.129 29.630 0.00 0.00 34.37 3.59
2409 2439 9.787435 TCCAAGAAGCTTAATAAAGAAGTACAA 57.213 29.630 0.00 0.00 34.37 2.41
2410 2440 9.436957 CTCCAAGAAGCTTAATAAAGAAGTACA 57.563 33.333 0.00 0.00 34.37 2.90
2411 2441 8.884726 CCTCCAAGAAGCTTAATAAAGAAGTAC 58.115 37.037 0.00 0.00 34.37 2.73
2412 2442 7.553044 GCCTCCAAGAAGCTTAATAAAGAAGTA 59.447 37.037 0.00 0.00 34.37 2.24
2413 2443 6.375736 GCCTCCAAGAAGCTTAATAAAGAAGT 59.624 38.462 0.00 0.00 34.37 3.01
2414 2444 6.375455 TGCCTCCAAGAAGCTTAATAAAGAAG 59.625 38.462 0.00 0.00 34.37 2.85
2415 2445 6.245408 TGCCTCCAAGAAGCTTAATAAAGAA 58.755 36.000 0.00 0.00 34.37 2.52
2416 2446 5.815581 TGCCTCCAAGAAGCTTAATAAAGA 58.184 37.500 0.00 0.00 34.37 2.52
2417 2447 6.515272 TTGCCTCCAAGAAGCTTAATAAAG 57.485 37.500 0.00 0.00 35.68 1.85
2421 2451 7.779798 TGTATTATTGCCTCCAAGAAGCTTAAT 59.220 33.333 0.00 0.00 35.82 1.40
2431 2461 7.490840 CATGAAATGTGTATTATTGCCTCCAA 58.509 34.615 0.00 0.00 40.20 3.53
2500 2530 9.442047 ACAAGAAGAACTCCAAACATTATAGAG 57.558 33.333 0.00 0.00 0.00 2.43
2566 2598 9.630098 GTTCATCAATAGAGAAAGCAAAAATGA 57.370 29.630 0.00 0.00 0.00 2.57
2653 2686 7.687592 GCATACCTCATGGCTTTATTGGAAATT 60.688 37.037 0.00 0.00 34.97 1.82
2710 2743 7.042335 GCTAGTCATGTCTAAGTTGTGGTATT 58.958 38.462 1.36 0.00 0.00 1.89
2715 2748 4.627467 GTGGCTAGTCATGTCTAAGTTGTG 59.373 45.833 0.00 0.00 0.00 3.33
2758 2795 7.125391 ACTTACCATTGTCCCACATGAATATT 58.875 34.615 0.00 0.00 0.00 1.28
2760 2797 6.073447 ACTTACCATTGTCCCACATGAATA 57.927 37.500 0.00 0.00 0.00 1.75
2796 2833 3.443329 ACACTTTTGTTCTCACATGCACA 59.557 39.130 0.00 0.00 28.43 4.57
2797 2834 3.792956 CACACTTTTGTTCTCACATGCAC 59.207 43.478 0.00 0.00 31.66 4.57
2807 2844 3.657625 CGTATTCGCACACACTTTTGTTC 59.342 43.478 0.00 0.00 31.66 3.18
2822 2859 0.179260 CACGTGTGGTTGCGTATTCG 60.179 55.000 7.58 0.00 39.48 3.34
2828 2865 1.790123 GCATATTCACGTGTGGTTGCG 60.790 52.381 16.51 0.88 0.00 4.85
2832 2869 1.448985 GGTGCATATTCACGTGTGGT 58.551 50.000 16.51 5.43 37.83 4.16
2865 2902 4.031426 GCTATATAGTAATGTTGCGGTCGC 59.969 45.833 11.38 8.54 42.35 5.19
2866 2903 5.158494 TGCTATATAGTAATGTTGCGGTCG 58.842 41.667 11.38 0.00 29.78 4.79
2867 2904 6.590292 ACATGCTATATAGTAATGTTGCGGTC 59.410 38.462 19.44 0.04 32.52 4.79
2868 2905 6.464222 ACATGCTATATAGTAATGTTGCGGT 58.536 36.000 19.44 3.80 32.52 5.68
2869 2906 6.968131 ACATGCTATATAGTAATGTTGCGG 57.032 37.500 19.44 3.34 32.52 5.69
2870 2907 7.010183 GGGTACATGCTATATAGTAATGTTGCG 59.990 40.741 25.38 8.38 35.66 4.85
2871 2908 7.822334 TGGGTACATGCTATATAGTAATGTTGC 59.178 37.037 25.38 20.28 35.66 4.17
2872 2909 9.151471 GTGGGTACATGCTATATAGTAATGTTG 57.849 37.037 25.38 14.35 35.66 3.33
2873 2910 8.876181 TGTGGGTACATGCTATATAGTAATGTT 58.124 33.333 25.38 15.83 35.66 2.71
2874 2911 8.430573 TGTGGGTACATGCTATATAGTAATGT 57.569 34.615 24.41 24.41 36.94 2.71
2875 2912 7.492669 GCTGTGGGTACATGCTATATAGTAATG 59.507 40.741 18.54 18.54 35.97 1.90
2876 2913 7.400339 AGCTGTGGGTACATGCTATATAGTAAT 59.600 37.037 11.38 3.37 38.57 1.89
2877 2914 6.724441 AGCTGTGGGTACATGCTATATAGTAA 59.276 38.462 11.38 1.11 38.57 2.24
2878 2915 6.253758 AGCTGTGGGTACATGCTATATAGTA 58.746 40.000 11.38 7.31 38.57 1.82
2879 2916 5.087323 AGCTGTGGGTACATGCTATATAGT 58.913 41.667 11.38 0.00 38.57 2.12
2880 2917 5.667539 AGCTGTGGGTACATGCTATATAG 57.332 43.478 5.30 5.30 38.57 1.31
2881 2918 5.421056 GGTAGCTGTGGGTACATGCTATATA 59.579 44.000 0.00 0.00 45.18 0.86
2882 2919 4.223032 GGTAGCTGTGGGTACATGCTATAT 59.777 45.833 0.00 0.00 45.18 0.86
2883 2920 3.576982 GGTAGCTGTGGGTACATGCTATA 59.423 47.826 0.00 0.00 45.18 1.31
2884 2921 2.368875 GGTAGCTGTGGGTACATGCTAT 59.631 50.000 0.00 0.00 45.18 2.97
2885 2922 1.760613 GGTAGCTGTGGGTACATGCTA 59.239 52.381 0.00 0.00 45.18 3.49
2886 2923 0.541863 GGTAGCTGTGGGTACATGCT 59.458 55.000 0.00 0.00 45.18 3.79
2887 2924 0.251916 TGGTAGCTGTGGGTACATGC 59.748 55.000 0.00 0.00 45.18 4.06
2888 2925 2.290008 TGTTGGTAGCTGTGGGTACATG 60.290 50.000 0.00 0.00 45.18 3.21
2889 2926 1.982226 TGTTGGTAGCTGTGGGTACAT 59.018 47.619 0.00 0.00 45.18 2.29
2890 2927 1.425694 TGTTGGTAGCTGTGGGTACA 58.574 50.000 0.00 0.00 45.18 2.90
2891 2928 2.781681 ATGTTGGTAGCTGTGGGTAC 57.218 50.000 0.00 0.00 43.36 3.34
2892 2929 4.912317 TTTATGTTGGTAGCTGTGGGTA 57.088 40.909 0.00 0.00 0.00 3.69
2893 2930 3.799432 TTTATGTTGGTAGCTGTGGGT 57.201 42.857 0.00 0.00 0.00 4.51
2894 2931 5.220777 CGTATTTTATGTTGGTAGCTGTGGG 60.221 44.000 0.00 0.00 0.00 4.61
2895 2932 5.729454 GCGTATTTTATGTTGGTAGCTGTGG 60.729 44.000 0.00 0.00 0.00 4.17
2896 2933 5.163804 TGCGTATTTTATGTTGGTAGCTGTG 60.164 40.000 0.00 0.00 0.00 3.66
2897 2934 4.938832 TGCGTATTTTATGTTGGTAGCTGT 59.061 37.500 0.00 0.00 0.00 4.40
2898 2935 5.478233 TGCGTATTTTATGTTGGTAGCTG 57.522 39.130 0.00 0.00 0.00 4.24
2899 2936 5.238650 GGATGCGTATTTTATGTTGGTAGCT 59.761 40.000 0.00 0.00 0.00 3.32
2900 2937 5.449304 GGATGCGTATTTTATGTTGGTAGC 58.551 41.667 0.00 0.00 0.00 3.58
2901 2938 5.675970 CGGATGCGTATTTTATGTTGGTAG 58.324 41.667 0.00 0.00 0.00 3.18
2902 2939 4.024725 GCGGATGCGTATTTTATGTTGGTA 60.025 41.667 8.84 0.00 0.00 3.25
2903 2940 3.242936 GCGGATGCGTATTTTATGTTGGT 60.243 43.478 8.84 0.00 0.00 3.67
2904 2941 3.296628 GCGGATGCGTATTTTATGTTGG 58.703 45.455 8.84 0.00 0.00 3.77
2918 2955 2.039974 TGTGTCCACATGCGGATGC 61.040 57.895 17.63 2.91 37.41 3.91
2919 2956 4.299756 TGTGTCCACATGCGGATG 57.700 55.556 16.07 16.07 37.41 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.