>input_sequence_64882
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------------------------------------------------------ATGCTGAGGCAGGAGGTCCTCTTGGG
GGTCTGTCGCATTGAAAACGACAAAAAACGCAATGACACGTTCACCAAGCGGCATGCTAATTTTTTCAAAAGTGCCAGTA
ACCTCTCCGCTCTCACGGGCGTGAGGGTTGCTGTCATCCTAGAGAAGGAATCGGGAAAGATGCATGGTTTTGGGATGCCG
TTAGTGGAACCCATTGTTGATTCTTTCCTGTCAGGAGATCCACTTATCGAACCGCTTGTCGATGAACAAGCGAAAGATAG
GATTGTATTGCTGCAGAGAGAGGTGACTAGGTTGGACATGGAGAATGCAAAGCTAGATACGAGAGCAAACCTCTCGCTGC
AACACATCAAGAAGATCCAAGCTCAGAACCCAAGGTTGCCAGCAAATAATATCTTCTCCAAGGGAGAAGATCTTAGTCTT
GAAGACCTAACCAACCTCTTCAATGCCCTCTTGCGAGTCAAGGAGGTAATTAGACGACGTCTGCCTCCACTACAACATGG
CCATGAACCAACAACTGGTGGTCCAAACGTGCGGCAAAACTGGTTGCTACCAAGTGGTCCTTCACAAGATCACCCACAGA
TTCATCAGACTTCACAAAAACCATCTTCATCCCACAATCTTCCACCTCAGGTGATGCCTCCAGTTCTAGTACCATTAACA
CCACAACGCACTATGGAACCACATTTTCCTATGCATTTACCACATATGTTCTAGTCCGTACCATCACCTTTAGCACCCGA
TTTGGCGTCCCTCCGACAAGCAGTTCCTGGTCACGTATAAGATTTCCATCCACCTCTTTATCCACACCTTTAGAACTATG
CAAGTCCTTAACACAAAATAGAACCACCTTTTTACCATGCAAGTGCCACAAATGTTACAGTCTACATCACCACCTTTAGC
TCCCCAGTTTACCTCCGTCCTACAATCAGTTGTTGA--------------------------------------------
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>chr2A_1_TraesCS2A01G523900
ATGGTCATGTACTCCTGTATATATGACCAGGAGGCTCAAGCAATAAACATCGTTTCCATCAATCCCCCCTCTATTCCTTC
TACAATATATA--CCCTCTCTTAGATGCCAAAGTATTTAGAAGCCATGATCATGTTAGGAAGAAA-TAACACTCTTAAGA
TTGTCGGAACACATGACATGTTTAATTTTGTTCTACCAAATATCATGCAATTTACACAATAATTAAAATGTTTAATTTGA
AATTTCTAAATTAAAATTTCACATAGAGAGTGAGAGAAACAAGTCTACTAATAACCATGAGATCATAGGTATGTCGGCAA
TACTACATATTGAAAAGAGATGTTCTAATCAGTAATTGTTTGACTTGTCTATGAGACTAAATGTATTCTTACCTATTAAG
ACATAGTTTTCAAGTAGTAACTCAATTGTCAAATCAGACATATAAGATTGGATGGCTACGATTAAGCGCACCAAATTCTA
ACTCATACTATGGATGTGGTTGCACTTAATAACAAAAAGAATTGGATAGCAACTATGACATGCATTTAGAAAAAGATTGC
TGGATGTGGATGAACTGACATAATGATGCACGCGTACGATATATTTGGA--------TAATGTACACGTGTATGATATAT
TTGGCCAACAATTAATGGTAGGCATAAGTTAGGCATTTGTTAATTATACATTGATTGCTGATTAAAGACTTGACGGTTTG
GATATACTTAAATAGAAAGGAATGTAACTTTGGATCCTAATTAATTTGAATGTGTGGATAAGGATGTACACTAACTTCTG
ATGTAAACCGTGAATTGTATAGAACATAGACAAGCTTCATGTTTCTGGAGATGGTGTTTGTGTTTTTATTTTCCTTCTAT
ATAA-GGGGGGTTCACCTCCTCGTATCTCCAAGTAAACTGATGTTAGCCAACAACAACCGGAAAG--ATATCTTTTGGTA
GATACTTGTAGCTTGCCATCTGTAGTTGTAAGTCCTTCAGTTATCCATTTGAGTATGCTGAGGCAGGAGGTCCTCTTGGG
GGTCTGTCGCATTGAAAACGACAAAAAACGCAATGACACGTTCACCAAGCGGCATGCTAATTTTTTCAAAAGTGCCAGTA
ACCTCTCCGCTCTCACGGGCGTGAGGGTTGCTGTCATCCTAGAGAAGGAATCGGGAAAGATGCATGGTTTTGGGATGCCG
TTAGTGGAACCCATTGTTGATTCTTTCCTGTCAGGAGATCCACTTATCGAACCGCTTGTCGATGAACAAGCGAAAGATAG
GATTGTATTGCTGCAGAGAGAGGTGACTAGGTTGGACATGGAGAATGCAAAGCTAGATACGAGAGCAAACCTCTCGCTGC
AACACATCAAGAAGATCCAAGCTCAGAACCCAAGGTTGCCAGCAAATAATATCTTCTCCAAGGGAGAAGATCTTAGTCTT
GAAGACCTAACCAACCTCTTCAATGCCCTCTTGCGAGTCAAGGAGGTAATTAGACGACGTCTGCCTCCACTACAACATGG
CCATGAACCAACAACTGGTGGTCCAAACGTGCGGCAAAACTGGTTGCTACCAAGTGGTCCTTCACAAGATCACCCACAGA
TTCATCAGACTTCACAAAAACCATCTTCATCCCACAATCTTCCACCTCAGGTGATGCCTCCAGTTCTAGTACCATTAACA
CCACAACGCACTATGGAACCACATTTTCCTATGCATTTACCACATATGTTCTAGTCCGTACCATCACCTTTAGCACCCGA
TTTGGCGTCCCTCCGACAAGCAGTTCCTGGTCACGTATAAGATTTCCATCCACCTCTTTATCCACACCTTTAGAACTATG
CAAGTCCTTAACACAAAATAGAACCACCTTTTTACCATGCAAGTGCCACAAATGTTACAGTCTACATCACCACCTTTAGC
TCCCCAGTTTACCTCCGTCCTACAATCAGTTGTTGACCATGCAAAGGATTTACCTCCACCACTTCAACCACAACTTCAAG
ACTATGCAAGTCCGACAAG---------GCCATTGCAGAACAACATGAGCCCTAACTCAATTGTTGAGAACACTATGGAC
AAATCCCCACAGTTGTTCTACTCCGGTGGTAATGACACTTTCATCCATGAATCATTCGGCTATGATAACTTGGCTAATGC
TCCTTTGGACCAGGCGCATGAAGTTCTAGGGATGGATTCTTACTTGGACTATAATATTAGTGATCTAGAGCAATATAACA
TGGAATGTGATTAGTGGGTCAATAATGCACCACCAGAATTTTCCGGTGGGAATGATGATGATATTGATGCATAATTTGGA
GGACTACTTTAGATGTCGGTTGGTGCTTTCATTTGAATTACATCAAGGGA------TATTATATTTCTATTAGGTGTCAT
TGTTGATTGTCGATTGTACTATTAGTTGTCATTGTCGATTGTACTTCTTTATTAAGCTTCTTGGAGGCAATAATACACAT
TTCATGTTTAGGGCATTATGTCATGAAGTTTATTCCAATATGACAAAATCTCTATAATGTTTGGAGTTCTTCTTGTTGAA
TGAGTAGTTAATG-TTTTTT-ATTGAGGAACAATATGTCATTTTTGCTTTCTCTATTGATGAACAAGAGGAATACATTAT
GTTTCACAATTATGTTACGCTTAAGTAACACA-TTTAAAACTTCTAATTTCCAATAAAGCCATGAGGTATGCTTGTGAAA
CAACTAAAATCTAGAATAAGTCAATACCACAACTTAGACATGA----CTAGCCACAAATGATAACAACCAATGTAATATT
CATGTGGGACAATGGTAAGTTGAAAATGCACATGTGCATGTGAGAACAAAAGTGTGTGCGAATACGCAACCACACGTGAA
TATGCACCCACGCATGGATATGCGACCGCAACATTACTATATAGCATGTACCCACAGCTACCAACATAAAATACGCATCC
GCATGTGGACACATGTCT
>chr2D_1
ATGCTCATGTAATCCTATATATATGCCCATGAGGCTCAAGCAGTAAACATCGATTCCATCAATCCCCTCTCTATTGCTTC
TATAATATATATACC-TCTCTTAGACACCGAAGTATTTAGAAGCCGTGATCATGTTAGGAAGAAAAAAACACTCCTAAGA
TTGTTGGAACACATG--------AATTTTGTTCTACCAAATATCATGCAATTTACAAATAATT--AAATGTTAAATTTGA
AATTTCTAAATTAAAATGTCATATA------GAGATAAACAAGTCCACTAATAACCATGAGATCATAGGTA-GTTGGCAA
TACTGCATACTGAAAAGAGATATTCTAATAATTAATTGTTTGAATTGTCTATGAGACTAAATGTATTCATACCTATTAAG
ACATAGTTTTCAAGTATTAACCGAATTCTCAAATT-GACATATATGATTAGATGGCTACGATCGAGCGCACCAAATCCTA
ACTCATACTATGGATGTAGTTGCACTTAATAACAAAAAGAATTGGATAGAAACTATGACATGCATTTAAAAAAAGTTTGT
TGGATGTGGATGAACTCAGGTAATGATACATCAATGAGTCTAAATATGGATATCAATTAATGTATACGCGTACGATATAT
TTGGCCAACAATTAATGGTGGGCATAAGTTAGGCATTTGTCAATTATACATTTATTGCTCATTAAAGACTTGGCGGTTTG
GATCTACTCAAAAATAAAGGAATGTAACTTTGGATCCTAATTAATTTGAATATGTGGATAAGGATGTACACCAACTTATG
ATGTAAACTGTGAATTGTATAGAACATAGACAAACTTCATGTTTCTGGAGATGGCGTTTATGCTTTCATTTTCCTTCTAT
ATAAGGGGGGGTTCACCTCCTCGTATCTCCAAGTAAACTGACATTAGCCAACAACAACTGGAAAGATATATCTTTTGGTA
GATACTTGTAGCTTCCCATTTGTAGTAGCAAGTATTTCGGTTATCCATTTGAGTATGCCGAGGCAGGAGGTCCGTTCGGG
CGTCTGTCGCATCGAAAACGACAAAAAACGCAATGCTGCGTTCACCAAGCGGCATGCTCATTTGTTCAAAAGTGCTAGTA
ACCTCTCCGCCCTCACAGGCGTGAGGGTTGCTGTCATCCTAGAGAAGGAATCGGGAAAGATGCATGGCTTTGGGACGCCG
TTAGTGCAACCCATTGTTGATTCTTTCCTGTCAGGAGATCCACTTGTCGAGCCTCTTGTCGATGAACAAGTGAAAGATAG
GATTGCATTGTTGCAGAGCGAGGTGGCTAGGTTGCACATGGAGAATGAAATGCTAAAAACGAGAGCAAACCTCTCACTCC
AACACATCAAGAAGATCCAATCTCAGAATTCAGGGATGCCAGCAAATAATATCTTCTCCAAGGTAGAAGATCTTAGTCTT
GAAGACCTAACCAACCTCTTCAATAACCTATTGCGAGTCAAGGAGGAAATTAGACGACGTTTGCCTCCACTACAACATGG
ACATGAACCAAAGGTTGGTGGTCCAAACATGCGGCAAAACTGGTTGCTACCAAGCGGTCCTTCACAAGATCACCCGAAGA
TTCATGAGACTTCACAGCAACCATTGTCATCCCACCATCTTCCACCTCAGGTGATGCCTTTGGTTCTAGTACCAGCAACA
CCACAACA------------------------------------------------------------------------
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--CCCAATTTACTTCCGTACTACAGTCAGTTGTTGACCATGCAAAGGATTTACCTCCACCACTTCAACCACAATTTCAAT
ACTATGCAAGTCCTAACACAATAACAAAGCCATTGCAGAACAACATGAGCCCTAACTCAATTGTTGAGAACACTGTGGAT
GAATCCCCACGGTTTTTCTACTCCGGTGGTAATGACACTTACGTCCATGAATCATTCAGCTATGATAACTTGTCTAATGC
TCCTTTGGACAAGGCGCATGAAATTCTAGGGATGGATTCTTACTTGGACTATAATATTAGTGATCTAGAGCAATATAAAA
TGGATTGTGTTGAGTGGGCCAATAATGCACCACCAGGCTCTTCCGGTGGGAATGATGATGATATTGATGGATGATTTCGA
GGACTACTTTAGATGTCGGTTGGTGATTTCATTTGAATTACATCAAGGGAATAAGATATTATATTTCCATTAGGTGTCAT
TGTCTATTGTACTAT--------------------------------TTTTTCAAGCTTCCTCGAGGCAACAGTACACAT
TTCATGTTTAGGGCATTATGTAATGGAGTTTATTTCAATATGACTAATTTTCTATAATGTTTGGAGTTCTTCTTGTTGAT
TGAGTAGTTATCATTTTTTT-ATTGAGGAACAACATGGCATTTTTGCTTTCTCTATTGATGAACAAGAGGA-TACATTAT
GTTTCACAATTATGTTACACTTAAGTAACACATTTCAAAACTTCTCATTTCCAATAAAGCCATGAGGTATGCTTGTGAAA
CAACTAAAAGCTGAAATAAGTCCATACTACAACTTAGACATGATCGACTAGCCACAAATGATAACAGCCAATGTGAGATT
CATGTGGGATAATGGTAAGTTGAAAATGCGCACCTGCATGTGAAAACAAAAGCGTGTGTGAATATGCACCCACACGTGGA
TATGCAACCAC---------------------------------------------------------------------
------------------
>chr2B_54
-----------------------------------------------------TTCCATCAATCCCCTCTCTATTCCTTC
TATAATATATA--CC-TCTCTTAGACACCGAAGTATTTAGAAGCCGTGATCATGTTAGCAAGAAAATAACACTTCTATGA
TTGTCGGAACACATG--------ACTTTTGTTCTACCAAATATCGTGCAATTTACAAATAAG------TGTTAAATTTGA
AATTTCTAAATTAAAATGTCATATA------GAGAAAAACAAGTCCATTAATAACCATGAGATCATAGGTATGTTGGCAA
TACTGCATACTGAAAAGAGATATTCTAATAAGTAATTTTTTGAATTGTATTAACCTA-----------------ATTAAG
ACATAGTTTTTAAGTATTAACCTAATTCTCAAATT-GACATATAAGATTGGATGGCTACGATCGAGCGCACGAAATCCTA
ACTCATACTATGGATGTAGTTGCACTTAATAACAAAAATAATTGGATAGCAACTATGACATGCATTTTAAAAAAGTTTGT
TGGATGTGGATGAACTCACGTAATGATACATCAATGAGTCTAAATATGGATATGAATTAATGTATATGCGTATGATATAT
TTGGCCAACAATTAATGGTGGGCATAAGTTAGGCACTTGTTAATTATACATTTATTGCTCATTAAAGACTTGGCGGTTTG
GATCTGCTCAAAAAGGACGGAATGTAACTTTGGATCCTAATTAATTTGAATATGTGGATAATGATTGACACCAACTTCTA
ATGTAAACCATGAATTGTATAGAACATAGAGAAACTTCATGTTTCTGGAGATGGCATTTATGCTTTCATTTTCCTTCTAT
ATAAGGGGGG-TTCACCTCCTCGTATCTCCAAGTAAACTGACATTAGCCAACAACAGCTGGAAAGATATATCTTTTGGTA
GATACTTGTAGCTTCCCATTTGTAGTAGCAAGTATTTCAGTTATCCATTTGAGTATGCCGAGGAAGGAGGTCCGTTCGGG
CGTCTGTCGCATCGAAAACGACAAAAAACGCAATGCTGCGTTCACCAAGCGGTATGCTCATTTGTTCAAAAGTGCTAGTA
ACCTCTCCGCCCTCACAGGCGTGAGGGTTGTTGTCATCCTAGAGAAGGAATCGGGAAAGATGCATGGCTTTGGGACGCCG
TTAGTGCAACCCATTGTTGATTCTTTCCTATTAGGAGATCCACTTGTTGAGCCTCTTGTCGATGAACAAGCAAAAGATAG
GATTGCATTATTGCAGAGCGAGGTGGCTAGGTTAGACATGGAGAATGAAATGCTAAAGACGAGAGCAAACCTCTCACTTC
AACACATCAAGAAGATCCAATCTCAGAACCCAGGGATGCCAGCAAATAATATCTTCTCCAAGGTAGAAGATCTTAGTCTT
GAAGACCTAACCAACCTCTTCAATAACCTATTGCGAGTCAAGGAGGAAATTAGACGACGTTTGCCTCCACTACAACATGG
ACATGAACCAAAGGCTGGTGGTCCAAACATGCGGCAAAAATGGTTGCTACCAAGCGGTCCTTCACAAGATCACCTGAAGA
TTCATGAGATTTCACGCCAACCATCGTCATCCCACCATATTCCACCTTAGGTGATGCCTTTGGTTCTAGTACCAGCAACA
CCACAACACAGTGTGGAACCACATTTTCCTATGCATTTACCAGAGATGTTTCAGTCCCCACCATCACCTTTGGCACCCCA
TTTGGCGTCCCTCCTACAACCAGTTCCCGATCAGGTATCAGACTTCAATCCACCTCTTTAGCCACAACCATAGAACTATG
CAAGTTCTTAACACAAAATAGAACCACATTTTTACCATGTAGGTACCACAAATCTTCC----------------------
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-----------------------------------------------AGCCCTAACTCAATTGTTGAGAACACTGTGGAT
GAATCCCCACGGGTTTTCTACTCCGGTGGTAATGACACTTACATCCATGAATCATTCGGCTATGATAACTTGTCTAATGC
TCCTTTGGACCAGGCGCATGAAATTCTAGGGATGGATTCTTACTTGGACTATAATATTAGTGATCTAGAGCAATATAAAA
TGGAATGTGTTGAGTGGGACAATAATGCACCACCAGACTCTTCCGGTGGGAATGATGATGATATTGATGGATGATTTCGA
GGACTACTTTAGATGTCGGTTGGTGCTTTCATTTGAATTACATCAAGGCAATAAGATATTATATTTCCATTAGGTGTCAT
TGTCGATTGTACTAT--------------------------------TTTGTTAAGCTTCCTTGAGGAAACAATACACAT
TTCATGTTTAGGGCATTATGTCATGAAGTTTATTTCAATATGACTAATTTTCTATAATGTCAGGAGTTCTTCTTGTTGAT
TGAGTAGTTATCATTTTTTTTATTGAGGAACAAGATGGCATTTTTGCTTTCTCTATTGATGAACAAGAGGA-TACATTAT
GTTTCACAATTATGTTACACTTAAGTAACACATTTCAAAACTTCTCATTTCCAATAAAGCCATGAGGTATGCTTGTGAAA
CAACTAAAAGCTAGAATAAGTCCATACTACAACTTAAACATGATCGACTAGCCACAAATGATAACAACCAATGTGAGATT
CATGTGGGACAATGGTAAGTTGAAAATGCACACCTGCATGTGAAAACAAAAGTGTGTGTGAATATGCACCCACACGTGGA
TATGCAACCAC---------------------------------------------------------------------
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>SNPs
---S-------S----S--------S---S------------S---------S--------------S------------
--S------------S---------SS--S---------------S----------------------------S-----
---------------SSSSSSSS---------------------------------S-SS-S-SS-------S-------
-----------------S---S---SSSSSS----S---------S----------------------------S-----
----S----S-----------S-------S-------------S------------------------S-----------
----------------S----SS----S------SS--------------------------SS------------S---
-----------------S--------------------------------------------------S------S---S
----------------S--S-------S--SSSS-SS-SSSS-S-SS-S---------------S---S-----------
-------------------S--------------------------------S------S------------S-------
---S----S---S--------------------------------------S-------------------S--------
---------------------------------S--------------------S----S--S---S-------------
-----------------------------------------SS---------------S---------------------
--------------S----S------S-S----SS-----------------------S--------------SS-S---
S-----------S----------------------SSS--------------------S----S-----------S----
----------S-----S--------------------------------------------------S-------S----
------S--------------------------------------S----S--S--------------------------
-----S----S-------S------S---------------------S--S----S-S-----------------S--S-
--------------------S-----------S--S---------------------------S----------------
------------------------SS---S----------------S-------------S-------------------
S----------SSS--------------S-------------------------S--------------------SS---
-----S----------SS-------S---------S-----------------------SSS------------SS----
-------S--S-S-----------------------------S-S-----SS-----SS------------S------S-
--------------S----S-------S-S---S----S---S---S-------------S-----S-SS----------
-----S---------------------S-----------S-S--S--------S--S-SSSSSSSSSSSSSSSSSSSSSS
SS----S-----S-----S-----S------------------------------------------------S-----S
-------------S-SS-S-------------------------------------------------------S----S
S---------S---S-------------------------S-------------------------------S-------
----------------------S-------------------------------------------------------S-
---------S-S------S------------------S-S-----------------------------S--S----S--
-------------------------------------------------------------------S------------
---S------SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---------S-S-------S---------
----------------------------------S---------S--S-S-----------------------------S
----------SSS--------------------S---S---------------------------------S--------
------------------S----------------S---------S----------------------------------
---------S------------S----S----------------------------------------------S-S---
--------------------------------SS---------S--------------S-----S---S---------S-
------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_43
------------------------GACCAGGAGGCTCAAGCAA-------------------------------------
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>reverse_1908
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-------------------------------------------------------------------CACCACCTTTAGC
TCCCCAG-------------------------------------------------------------------------
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>forward_1759
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-----------------------------------------------------------ACCATCACCTTTAGCACCCG-
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>reverse_2859
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----------------------------------------------------------CGAATACGCAACCACACGTG--
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