Multiple sequence alignment - TraesCS2A01G519900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G519900 chr2A 100.000 3145 0 0 1 3145 742783016 742779872 0.000000e+00 5808.0
1 TraesCS2A01G519900 chr2A 94.588 813 42 2 2331 3142 729153675 729154486 0.000000e+00 1256.0
2 TraesCS2A01G519900 chr2A 91.200 125 10 1 539 663 15278582 15278459 5.390000e-38 169.0
3 TraesCS2A01G519900 chr2D 92.018 1303 80 13 961 2250 610044728 610043437 0.000000e+00 1808.0
4 TraesCS2A01G519900 chr2D 87.786 131 15 1 532 662 253581593 253581722 5.430000e-33 152.0
5 TraesCS2A01G519900 chr2B 88.309 1514 120 32 660 2145 744686663 744685179 0.000000e+00 1762.0
6 TraesCS2A01G519900 chr2B 91.357 1157 82 9 1000 2146 744225997 744227145 0.000000e+00 1567.0
7 TraesCS2A01G519900 chr2B 91.732 895 67 7 2251 3142 672815486 672814596 0.000000e+00 1236.0
8 TraesCS2A01G519900 chr2B 92.525 816 47 10 1440 2249 744870136 744869329 0.000000e+00 1157.0
9 TraesCS2A01G519900 chr2B 91.597 595 50 0 1553 2147 744411558 744412152 0.000000e+00 822.0
10 TraesCS2A01G519900 chr2B 87.110 737 72 13 668 1387 744870871 744870141 0.000000e+00 813.0
11 TraesCS2A01G519900 chr2B 88.571 385 41 2 1000 1384 744411181 744411562 6.140000e-127 464.0
12 TraesCS2A01G519900 chr2B 82.873 181 24 7 660 838 744218521 744218696 4.200000e-34 156.0
13 TraesCS2A01G519900 chr5A 97.427 894 19 4 2251 3142 239404558 239403667 0.000000e+00 1520.0
14 TraesCS2A01G519900 chr4A 94.663 787 38 4 2358 3142 25796020 25795236 0.000000e+00 1218.0
15 TraesCS2A01G519900 chr5B 91.319 887 69 8 2261 3142 398441622 398440739 0.000000e+00 1205.0
16 TraesCS2A01G519900 chr3B 90.749 908 68 11 2242 3142 457157476 457158374 0.000000e+00 1197.0
17 TraesCS2A01G519900 chr3B 90.737 896 69 12 2251 3140 685399620 685398733 0.000000e+00 1182.0
18 TraesCS2A01G519900 chr3B 80.672 119 23 0 57 175 540656345 540656227 3.340000e-15 93.5
19 TraesCS2A01G519900 chr3B 93.182 44 3 0 1208 1251 58860690 58860647 7.280000e-07 65.8
20 TraesCS2A01G519900 chr6B 87.583 902 92 15 2251 3142 591279248 591278357 0.000000e+00 1027.0
21 TraesCS2A01G519900 chr7B 88.185 821 77 10 2329 3142 15931112 15931919 0.000000e+00 961.0
22 TraesCS2A01G519900 chr4B 90.226 133 12 1 530 661 253109691 253109823 4.170000e-39 172.0
23 TraesCS2A01G519900 chr4B 88.636 132 14 1 530 661 414966181 414966051 3.250000e-35 159.0
24 TraesCS2A01G519900 chr7D 88.806 134 13 2 529 661 635616350 635616482 2.510000e-36 163.0
25 TraesCS2A01G519900 chr7D 78.099 242 46 4 26 267 542887295 542887529 2.530000e-31 147.0
26 TraesCS2A01G519900 chr4D 88.806 134 13 2 530 662 462840859 462840991 2.510000e-36 163.0
27 TraesCS2A01G519900 chr7A 88.722 133 13 2 530 661 343599914 343600045 9.030000e-36 161.0
28 TraesCS2A01G519900 chr5D 90.244 123 11 1 539 661 123580617 123580496 3.250000e-35 159.0
29 TraesCS2A01G519900 chr1D 87.313 134 15 2 529 661 299268415 299268547 5.430000e-33 152.0
30 TraesCS2A01G519900 chr3D 83.234 167 20 5 1089 1251 35254105 35253943 2.530000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G519900 chr2A 742779872 742783016 3144 True 5808 5808 100.0000 1 3145 1 chr2A.!!$R2 3144
1 TraesCS2A01G519900 chr2A 729153675 729154486 811 False 1256 1256 94.5880 2331 3142 1 chr2A.!!$F1 811
2 TraesCS2A01G519900 chr2D 610043437 610044728 1291 True 1808 1808 92.0180 961 2250 1 chr2D.!!$R1 1289
3 TraesCS2A01G519900 chr2B 744685179 744686663 1484 True 1762 1762 88.3090 660 2145 1 chr2B.!!$R2 1485
4 TraesCS2A01G519900 chr2B 744225997 744227145 1148 False 1567 1567 91.3570 1000 2146 1 chr2B.!!$F2 1146
5 TraesCS2A01G519900 chr2B 672814596 672815486 890 True 1236 1236 91.7320 2251 3142 1 chr2B.!!$R1 891
6 TraesCS2A01G519900 chr2B 744869329 744870871 1542 True 985 1157 89.8175 668 2249 2 chr2B.!!$R3 1581
7 TraesCS2A01G519900 chr2B 744411181 744412152 971 False 643 822 90.0840 1000 2147 2 chr2B.!!$F3 1147
8 TraesCS2A01G519900 chr5A 239403667 239404558 891 True 1520 1520 97.4270 2251 3142 1 chr5A.!!$R1 891
9 TraesCS2A01G519900 chr4A 25795236 25796020 784 True 1218 1218 94.6630 2358 3142 1 chr4A.!!$R1 784
10 TraesCS2A01G519900 chr5B 398440739 398441622 883 True 1205 1205 91.3190 2261 3142 1 chr5B.!!$R1 881
11 TraesCS2A01G519900 chr3B 457157476 457158374 898 False 1197 1197 90.7490 2242 3142 1 chr3B.!!$F1 900
12 TraesCS2A01G519900 chr3B 685398733 685399620 887 True 1182 1182 90.7370 2251 3140 1 chr3B.!!$R3 889
13 TraesCS2A01G519900 chr6B 591278357 591279248 891 True 1027 1027 87.5830 2251 3142 1 chr6B.!!$R1 891
14 TraesCS2A01G519900 chr7B 15931112 15931919 807 False 961 961 88.1850 2329 3142 1 chr7B.!!$F1 813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
288 289 0.029035 CGTCGACTAGGGAATCGTGG 59.971 60.0 14.7 0.0 39.38 4.94 F
500 501 0.036388 GAGATGCCACCCGAGACAAA 60.036 55.0 0.0 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1611 1663 0.251354 ATGCACTCGCTCAGGATGTT 59.749 50.0 0.0 0.0 39.64 2.71 R
2364 2420 0.532862 AATCGGTCAGCAATAGGCCG 60.533 55.0 0.0 0.0 46.50 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.904253 ACTATCAGGAAGTAGTCGAAGC 57.096 45.455 0.00 0.00 0.00 3.86
22 23 4.270834 ACTATCAGGAAGTAGTCGAAGCA 58.729 43.478 0.00 0.00 0.00 3.91
23 24 4.705507 ACTATCAGGAAGTAGTCGAAGCAA 59.294 41.667 0.00 0.00 0.00 3.91
24 25 4.537135 ATCAGGAAGTAGTCGAAGCAAA 57.463 40.909 0.00 0.00 0.00 3.68
25 26 3.914312 TCAGGAAGTAGTCGAAGCAAAG 58.086 45.455 0.00 0.00 0.00 2.77
26 27 2.996621 CAGGAAGTAGTCGAAGCAAAGG 59.003 50.000 0.00 0.00 0.00 3.11
27 28 2.897969 AGGAAGTAGTCGAAGCAAAGGA 59.102 45.455 0.00 0.00 0.00 3.36
28 29 2.994578 GGAAGTAGTCGAAGCAAAGGAC 59.005 50.000 0.00 0.00 0.00 3.85
29 30 2.349297 AGTAGTCGAAGCAAAGGACG 57.651 50.000 0.00 0.00 35.87 4.79
30 31 1.067776 AGTAGTCGAAGCAAAGGACGG 60.068 52.381 0.00 0.00 35.87 4.79
31 32 1.068055 GTAGTCGAAGCAAAGGACGGA 60.068 52.381 0.00 0.00 35.87 4.69
32 33 0.608640 AGTCGAAGCAAAGGACGGAT 59.391 50.000 0.00 0.00 35.87 4.18
33 34 1.000145 GTCGAAGCAAAGGACGGATC 59.000 55.000 0.00 0.00 0.00 3.36
34 35 0.606096 TCGAAGCAAAGGACGGATCA 59.394 50.000 0.00 0.00 0.00 2.92
35 36 1.001520 TCGAAGCAAAGGACGGATCAA 59.998 47.619 0.00 0.00 0.00 2.57
36 37 1.394917 CGAAGCAAAGGACGGATCAAG 59.605 52.381 0.00 0.00 0.00 3.02
37 38 2.699954 GAAGCAAAGGACGGATCAAGA 58.300 47.619 0.00 0.00 0.00 3.02
38 39 2.393271 AGCAAAGGACGGATCAAGAG 57.607 50.000 0.00 0.00 0.00 2.85
39 40 1.625818 AGCAAAGGACGGATCAAGAGT 59.374 47.619 0.00 0.00 0.00 3.24
40 41 2.832129 AGCAAAGGACGGATCAAGAGTA 59.168 45.455 0.00 0.00 0.00 2.59
41 42 3.118956 AGCAAAGGACGGATCAAGAGTAG 60.119 47.826 0.00 0.00 0.00 2.57
42 43 3.368531 GCAAAGGACGGATCAAGAGTAGT 60.369 47.826 0.00 0.00 0.00 2.73
43 44 4.425520 CAAAGGACGGATCAAGAGTAGTC 58.574 47.826 0.00 0.00 0.00 2.59
44 45 3.367646 AGGACGGATCAAGAGTAGTCA 57.632 47.619 0.00 0.00 0.00 3.41
45 46 3.904717 AGGACGGATCAAGAGTAGTCAT 58.095 45.455 0.00 0.00 0.00 3.06
46 47 3.634448 AGGACGGATCAAGAGTAGTCATG 59.366 47.826 0.00 0.00 0.00 3.07
47 48 3.381908 GGACGGATCAAGAGTAGTCATGT 59.618 47.826 0.00 0.00 0.00 3.21
48 49 4.142138 GGACGGATCAAGAGTAGTCATGTT 60.142 45.833 0.00 0.00 0.00 2.71
49 50 4.748892 ACGGATCAAGAGTAGTCATGTTG 58.251 43.478 0.00 0.00 0.00 3.33
50 51 4.462834 ACGGATCAAGAGTAGTCATGTTGA 59.537 41.667 0.00 2.01 0.00 3.18
51 52 5.039984 CGGATCAAGAGTAGTCATGTTGAG 58.960 45.833 0.00 0.00 30.99 3.02
52 53 5.163612 CGGATCAAGAGTAGTCATGTTGAGA 60.164 44.000 0.00 0.00 30.99 3.27
53 54 6.039616 GGATCAAGAGTAGTCATGTTGAGAC 58.960 44.000 0.00 0.00 36.26 3.36
54 55 5.048153 TCAAGAGTAGTCATGTTGAGACG 57.952 43.478 0.00 0.00 40.84 4.18
55 56 4.519350 TCAAGAGTAGTCATGTTGAGACGT 59.481 41.667 0.00 0.00 40.84 4.34
56 57 5.009710 TCAAGAGTAGTCATGTTGAGACGTT 59.990 40.000 0.00 0.00 40.84 3.99
57 58 5.049398 AGAGTAGTCATGTTGAGACGTTC 57.951 43.478 0.00 0.00 40.84 3.95
58 59 4.082679 AGAGTAGTCATGTTGAGACGTTCC 60.083 45.833 0.00 0.00 40.84 3.62
59 60 2.457366 AGTCATGTTGAGACGTTCCC 57.543 50.000 0.00 0.00 40.84 3.97
60 61 1.691976 AGTCATGTTGAGACGTTCCCA 59.308 47.619 0.00 0.00 40.84 4.37
61 62 2.104111 AGTCATGTTGAGACGTTCCCAA 59.896 45.455 0.00 0.00 40.84 4.12
62 63 2.875933 GTCATGTTGAGACGTTCCCAAA 59.124 45.455 0.00 0.00 0.00 3.28
63 64 3.314080 GTCATGTTGAGACGTTCCCAAAA 59.686 43.478 0.00 0.00 0.00 2.44
64 65 3.948473 TCATGTTGAGACGTTCCCAAAAA 59.052 39.130 0.00 0.00 0.00 1.94
84 85 3.629142 AAACTTATCACCCTTCTCCCG 57.371 47.619 0.00 0.00 0.00 5.14
85 86 2.544844 ACTTATCACCCTTCTCCCGA 57.455 50.000 0.00 0.00 0.00 5.14
86 87 3.047695 ACTTATCACCCTTCTCCCGAT 57.952 47.619 0.00 0.00 0.00 4.18
87 88 2.700897 ACTTATCACCCTTCTCCCGATG 59.299 50.000 0.00 0.00 0.00 3.84
88 89 1.048601 TATCACCCTTCTCCCGATGC 58.951 55.000 0.00 0.00 0.00 3.91
89 90 0.982852 ATCACCCTTCTCCCGATGCA 60.983 55.000 0.00 0.00 0.00 3.96
90 91 1.153289 CACCCTTCTCCCGATGCAG 60.153 63.158 0.00 0.00 0.00 4.41
91 92 2.370445 ACCCTTCTCCCGATGCAGG 61.370 63.158 0.00 0.00 0.00 4.85
92 93 2.066393 CCCTTCTCCCGATGCAGGA 61.066 63.158 0.00 0.00 0.00 3.86
93 94 1.414061 CCCTTCTCCCGATGCAGGAT 61.414 60.000 0.00 0.00 31.48 3.24
94 95 0.034616 CCTTCTCCCGATGCAGGATC 59.965 60.000 0.00 0.00 31.48 3.36
95 96 1.047002 CTTCTCCCGATGCAGGATCT 58.953 55.000 0.00 0.00 31.48 2.75
96 97 1.000731 CTTCTCCCGATGCAGGATCTC 59.999 57.143 0.00 0.00 31.48 2.75
97 98 0.106015 TCTCCCGATGCAGGATCTCA 60.106 55.000 0.00 0.00 31.48 3.27
98 99 0.755079 CTCCCGATGCAGGATCTCAA 59.245 55.000 0.00 0.00 31.48 3.02
99 100 1.139654 CTCCCGATGCAGGATCTCAAA 59.860 52.381 0.00 0.00 31.48 2.69
100 101 1.139654 TCCCGATGCAGGATCTCAAAG 59.860 52.381 0.00 0.00 0.00 2.77
101 102 1.590932 CCGATGCAGGATCTCAAAGG 58.409 55.000 0.00 0.00 0.00 3.11
102 103 1.139654 CCGATGCAGGATCTCAAAGGA 59.860 52.381 0.00 0.00 0.00 3.36
103 104 2.208431 CGATGCAGGATCTCAAAGGAC 58.792 52.381 0.00 0.00 0.00 3.85
104 105 2.208431 GATGCAGGATCTCAAAGGACG 58.792 52.381 0.00 0.00 0.00 4.79
105 106 0.250234 TGCAGGATCTCAAAGGACGG 59.750 55.000 0.00 0.00 0.00 4.79
106 107 0.462759 GCAGGATCTCAAAGGACGGG 60.463 60.000 0.00 0.00 0.00 5.28
107 108 0.179000 CAGGATCTCAAAGGACGGGG 59.821 60.000 0.00 0.00 0.00 5.73
108 109 0.252742 AGGATCTCAAAGGACGGGGT 60.253 55.000 0.00 0.00 0.00 4.95
109 110 0.618981 GGATCTCAAAGGACGGGGTT 59.381 55.000 0.00 0.00 0.00 4.11
110 111 1.407025 GGATCTCAAAGGACGGGGTTC 60.407 57.143 0.00 0.00 0.00 3.62
111 112 0.618981 ATCTCAAAGGACGGGGTTCC 59.381 55.000 0.00 0.00 35.66 3.62
127 128 4.168291 CCGGAGGCCTGCTCTTCC 62.168 72.222 23.05 9.62 46.14 3.46
128 129 4.521062 CGGAGGCCTGCTCTTCCG 62.521 72.222 23.05 18.10 0.00 4.30
129 130 3.077556 GGAGGCCTGCTCTTCCGA 61.078 66.667 18.47 0.00 0.00 4.55
130 131 2.185608 GAGGCCTGCTCTTCCGAC 59.814 66.667 12.00 0.00 0.00 4.79
131 132 3.378399 GAGGCCTGCTCTTCCGACC 62.378 68.421 12.00 0.00 0.00 4.79
132 133 3.706373 GGCCTGCTCTTCCGACCA 61.706 66.667 0.00 0.00 0.00 4.02
133 134 2.347490 GCCTGCTCTTCCGACCAA 59.653 61.111 0.00 0.00 0.00 3.67
134 135 2.035442 GCCTGCTCTTCCGACCAAC 61.035 63.158 0.00 0.00 0.00 3.77
135 136 1.376037 CCTGCTCTTCCGACCAACC 60.376 63.158 0.00 0.00 0.00 3.77
136 137 1.738099 CTGCTCTTCCGACCAACCG 60.738 63.158 0.00 0.00 0.00 4.44
137 138 2.342648 GCTCTTCCGACCAACCGT 59.657 61.111 0.00 0.00 0.00 4.83
138 139 2.027625 GCTCTTCCGACCAACCGTG 61.028 63.158 0.00 0.00 0.00 4.94
139 140 2.027625 CTCTTCCGACCAACCGTGC 61.028 63.158 0.00 0.00 0.00 5.34
140 141 2.280524 CTTCCGACCAACCGTGCA 60.281 61.111 0.00 0.00 0.00 4.57
141 142 2.589442 TTCCGACCAACCGTGCAC 60.589 61.111 6.82 6.82 0.00 4.57
142 143 4.953868 TCCGACCAACCGTGCACG 62.954 66.667 31.77 31.77 39.44 5.34
145 146 4.012895 GACCAACCGTGCACGCAG 62.013 66.667 33.17 22.54 38.18 5.18
147 148 4.012895 CCAACCGTGCACGCAGTC 62.013 66.667 33.17 0.00 41.61 3.51
148 149 3.268603 CAACCGTGCACGCAGTCA 61.269 61.111 33.17 0.00 41.61 3.41
149 150 2.280797 AACCGTGCACGCAGTCAT 60.281 55.556 33.17 10.15 41.61 3.06
150 151 2.317609 AACCGTGCACGCAGTCATC 61.318 57.895 33.17 0.00 41.61 2.92
151 152 2.738139 CCGTGCACGCAGTCATCA 60.738 61.111 33.17 0.00 41.61 3.07
152 153 2.733671 CCGTGCACGCAGTCATCAG 61.734 63.158 33.17 12.69 41.61 2.90
153 154 2.733671 CGTGCACGCAGTCATCAGG 61.734 63.158 28.16 0.00 41.61 3.86
154 155 1.374631 GTGCACGCAGTCATCAGGA 60.375 57.895 0.00 0.00 41.61 3.86
155 156 0.742281 GTGCACGCAGTCATCAGGAT 60.742 55.000 0.00 0.00 41.61 3.24
156 157 0.741927 TGCACGCAGTCATCAGGATG 60.742 55.000 2.84 2.84 41.61 3.51
157 158 1.434622 GCACGCAGTCATCAGGATGG 61.435 60.000 9.25 0.00 41.61 3.51
158 159 0.176449 CACGCAGTCATCAGGATGGA 59.824 55.000 9.25 0.00 41.61 3.41
159 160 0.904649 ACGCAGTCATCAGGATGGAA 59.095 50.000 9.25 0.00 29.74 3.53
160 161 1.487976 ACGCAGTCATCAGGATGGAAT 59.512 47.619 9.25 0.00 29.74 3.01
161 162 2.141517 CGCAGTCATCAGGATGGAATC 58.858 52.381 9.25 0.00 44.55 2.52
162 163 2.141517 GCAGTCATCAGGATGGAATCG 58.858 52.381 9.25 0.00 46.86 3.34
163 164 2.141517 CAGTCATCAGGATGGAATCGC 58.858 52.381 9.25 0.00 46.86 4.58
164 165 1.071385 AGTCATCAGGATGGAATCGCC 59.929 52.381 9.25 0.00 46.86 5.54
165 166 0.033920 TCATCAGGATGGAATCGCCG 59.966 55.000 9.25 0.00 46.86 6.46
166 167 0.952497 CATCAGGATGGAATCGCCGG 60.952 60.000 0.00 0.00 46.86 6.13
167 168 1.121407 ATCAGGATGGAATCGCCGGA 61.121 55.000 5.05 0.00 46.86 5.14
168 169 1.146041 CAGGATGGAATCGCCGGAA 59.854 57.895 5.05 0.00 46.86 4.30
169 170 0.882042 CAGGATGGAATCGCCGGAAG 60.882 60.000 5.05 0.00 46.86 3.46
170 171 2.254464 GGATGGAATCGCCGGAAGC 61.254 63.158 5.05 0.00 46.86 3.86
171 172 1.523711 GATGGAATCGCCGGAAGCA 60.524 57.895 5.05 0.00 44.04 3.91
172 173 1.502163 GATGGAATCGCCGGAAGCAG 61.502 60.000 5.05 0.00 44.04 4.24
173 174 3.577313 GGAATCGCCGGAAGCAGC 61.577 66.667 5.05 0.00 44.04 5.25
174 175 2.819595 GAATCGCCGGAAGCAGCA 60.820 61.111 5.05 0.00 44.04 4.41
175 176 3.100862 GAATCGCCGGAAGCAGCAC 62.101 63.158 5.05 0.00 44.04 4.40
176 177 3.899981 AATCGCCGGAAGCAGCACA 62.900 57.895 5.05 0.00 44.04 4.57
177 178 3.687321 ATCGCCGGAAGCAGCACAT 62.687 57.895 5.05 0.00 44.04 3.21
178 179 3.434319 CGCCGGAAGCAGCACATT 61.434 61.111 5.05 0.00 44.04 2.71
179 180 2.106074 CGCCGGAAGCAGCACATTA 61.106 57.895 5.05 0.00 44.04 1.90
180 181 1.643868 CGCCGGAAGCAGCACATTAA 61.644 55.000 5.05 0.00 44.04 1.40
181 182 0.525761 GCCGGAAGCAGCACATTAAA 59.474 50.000 5.05 0.00 42.97 1.52
182 183 1.067915 GCCGGAAGCAGCACATTAAAA 60.068 47.619 5.05 0.00 42.97 1.52
183 184 2.867429 CCGGAAGCAGCACATTAAAAG 58.133 47.619 0.00 0.00 0.00 2.27
184 185 2.487762 CCGGAAGCAGCACATTAAAAGA 59.512 45.455 0.00 0.00 0.00 2.52
185 186 3.057596 CCGGAAGCAGCACATTAAAAGAA 60.058 43.478 0.00 0.00 0.00 2.52
186 187 4.545610 CGGAAGCAGCACATTAAAAGAAA 58.454 39.130 0.00 0.00 0.00 2.52
187 188 5.163513 CGGAAGCAGCACATTAAAAGAAAT 58.836 37.500 0.00 0.00 0.00 2.17
188 189 6.321717 CGGAAGCAGCACATTAAAAGAAATA 58.678 36.000 0.00 0.00 0.00 1.40
189 190 6.806249 CGGAAGCAGCACATTAAAAGAAATAA 59.194 34.615 0.00 0.00 0.00 1.40
190 191 7.489113 CGGAAGCAGCACATTAAAAGAAATAAT 59.511 33.333 0.00 0.00 0.00 1.28
191 192 9.801873 GGAAGCAGCACATTAAAAGAAATAATA 57.198 29.630 0.00 0.00 0.00 0.98
205 206 8.904099 AAAGAAATAATAGATGACGGTTAGGG 57.096 34.615 0.00 0.00 0.00 3.53
206 207 7.613551 AGAAATAATAGATGACGGTTAGGGT 57.386 36.000 0.00 0.00 0.00 4.34
207 208 8.030913 AGAAATAATAGATGACGGTTAGGGTT 57.969 34.615 0.00 0.00 0.00 4.11
208 209 7.931948 AGAAATAATAGATGACGGTTAGGGTTG 59.068 37.037 0.00 0.00 0.00 3.77
209 210 2.973694 TAGATGACGGTTAGGGTTGC 57.026 50.000 0.00 0.00 0.00 4.17
210 211 0.981183 AGATGACGGTTAGGGTTGCA 59.019 50.000 0.00 0.00 0.00 4.08
211 212 1.559682 AGATGACGGTTAGGGTTGCAT 59.440 47.619 0.00 0.00 0.00 3.96
212 213 2.769663 AGATGACGGTTAGGGTTGCATA 59.230 45.455 0.00 0.00 0.00 3.14
213 214 2.684001 TGACGGTTAGGGTTGCATAG 57.316 50.000 0.00 0.00 0.00 2.23
214 215 1.208535 TGACGGTTAGGGTTGCATAGG 59.791 52.381 0.00 0.00 0.00 2.57
215 216 0.544697 ACGGTTAGGGTTGCATAGGG 59.455 55.000 0.00 0.00 0.00 3.53
216 217 0.834612 CGGTTAGGGTTGCATAGGGA 59.165 55.000 0.00 0.00 0.00 4.20
217 218 1.202651 CGGTTAGGGTTGCATAGGGAG 60.203 57.143 0.00 0.00 0.00 4.30
218 219 1.143073 GGTTAGGGTTGCATAGGGAGG 59.857 57.143 0.00 0.00 0.00 4.30
219 220 1.143073 GTTAGGGTTGCATAGGGAGGG 59.857 57.143 0.00 0.00 0.00 4.30
220 221 0.645496 TAGGGTTGCATAGGGAGGGA 59.355 55.000 0.00 0.00 0.00 4.20
221 222 0.695803 AGGGTTGCATAGGGAGGGAG 60.696 60.000 0.00 0.00 0.00 4.30
222 223 0.988678 GGGTTGCATAGGGAGGGAGT 60.989 60.000 0.00 0.00 0.00 3.85
223 224 0.181350 GGTTGCATAGGGAGGGAGTG 59.819 60.000 0.00 0.00 0.00 3.51
224 225 1.204146 GTTGCATAGGGAGGGAGTGA 58.796 55.000 0.00 0.00 0.00 3.41
225 226 1.139853 GTTGCATAGGGAGGGAGTGAG 59.860 57.143 0.00 0.00 0.00 3.51
226 227 0.339859 TGCATAGGGAGGGAGTGAGT 59.660 55.000 0.00 0.00 0.00 3.41
227 228 1.044611 GCATAGGGAGGGAGTGAGTC 58.955 60.000 0.00 0.00 0.00 3.36
228 229 1.710816 CATAGGGAGGGAGTGAGTCC 58.289 60.000 0.00 0.00 46.10 3.85
235 236 2.047179 GGAGTGAGTCCGTTGGCC 60.047 66.667 0.00 0.00 34.84 5.36
236 237 2.432628 GAGTGAGTCCGTTGGCCG 60.433 66.667 0.00 0.00 0.00 6.13
237 238 4.681978 AGTGAGTCCGTTGGCCGC 62.682 66.667 0.00 0.00 34.38 6.53
238 239 4.980805 GTGAGTCCGTTGGCCGCA 62.981 66.667 0.00 0.00 34.38 5.69
239 240 4.980805 TGAGTCCGTTGGCCGCAC 62.981 66.667 0.00 0.00 34.38 5.34
253 254 3.982241 GCACCTGCACTGGCCAAC 61.982 66.667 7.01 0.00 41.59 3.77
254 255 3.663176 CACCTGCACTGGCCAACG 61.663 66.667 7.01 0.88 40.13 4.10
266 267 3.834732 GCCAACGCCTCCGATATAT 57.165 52.632 0.00 0.00 38.29 0.86
267 268 1.359848 GCCAACGCCTCCGATATATG 58.640 55.000 0.00 0.00 38.29 1.78
268 269 1.337823 GCCAACGCCTCCGATATATGT 60.338 52.381 0.00 0.00 38.29 2.29
269 270 2.607187 CCAACGCCTCCGATATATGTC 58.393 52.381 0.00 0.00 38.29 3.06
270 271 2.251040 CAACGCCTCCGATATATGTCG 58.749 52.381 14.30 14.30 41.13 4.35
271 272 1.531423 ACGCCTCCGATATATGTCGT 58.469 50.000 18.83 0.00 39.89 4.34
272 273 1.467734 ACGCCTCCGATATATGTCGTC 59.532 52.381 18.83 6.02 39.89 4.20
273 274 1.529214 CGCCTCCGATATATGTCGTCG 60.529 57.143 18.83 12.72 39.89 5.12
274 275 1.736126 GCCTCCGATATATGTCGTCGA 59.264 52.381 18.83 10.05 39.89 4.20
275 276 2.475852 GCCTCCGATATATGTCGTCGAC 60.476 54.545 18.51 18.51 39.89 4.20
276 277 3.001414 CCTCCGATATATGTCGTCGACT 58.999 50.000 24.75 13.39 39.89 4.18
277 278 4.179298 CCTCCGATATATGTCGTCGACTA 58.821 47.826 24.75 14.96 39.89 2.59
278 279 4.268167 CCTCCGATATATGTCGTCGACTAG 59.732 50.000 24.75 5.91 39.89 2.57
279 280 4.179298 TCCGATATATGTCGTCGACTAGG 58.821 47.826 24.75 14.11 39.89 3.02
280 281 3.309138 CCGATATATGTCGTCGACTAGGG 59.691 52.174 24.75 12.65 39.89 3.53
281 282 4.179298 CGATATATGTCGTCGACTAGGGA 58.821 47.826 24.75 5.89 37.55 4.20
282 283 4.628766 CGATATATGTCGTCGACTAGGGAA 59.371 45.833 24.75 5.15 37.55 3.97
283 284 5.293814 CGATATATGTCGTCGACTAGGGAAT 59.706 44.000 24.75 12.01 37.55 3.01
284 285 6.509837 CGATATATGTCGTCGACTAGGGAATC 60.510 46.154 24.75 17.12 37.55 2.52
285 286 1.012086 TGTCGTCGACTAGGGAATCG 58.988 55.000 24.75 0.00 39.72 3.34
286 287 1.012841 GTCGTCGACTAGGGAATCGT 58.987 55.000 18.09 0.00 39.38 3.73
287 288 1.012086 TCGTCGACTAGGGAATCGTG 58.988 55.000 14.70 0.00 39.38 4.35
288 289 0.029035 CGTCGACTAGGGAATCGTGG 59.971 60.000 14.70 0.00 39.38 4.94
289 290 0.248949 GTCGACTAGGGAATCGTGGC 60.249 60.000 8.70 0.00 39.38 5.01
290 291 0.681887 TCGACTAGGGAATCGTGGCA 60.682 55.000 0.00 0.00 39.38 4.92
291 292 0.389391 CGACTAGGGAATCGTGGCAT 59.611 55.000 0.00 0.00 33.63 4.40
292 293 1.869754 CGACTAGGGAATCGTGGCATG 60.870 57.143 0.00 0.00 33.63 4.06
293 294 0.469917 ACTAGGGAATCGTGGCATGG 59.530 55.000 6.90 0.00 0.00 3.66
294 295 0.469917 CTAGGGAATCGTGGCATGGT 59.530 55.000 6.90 0.00 0.00 3.55
295 296 0.468226 TAGGGAATCGTGGCATGGTC 59.532 55.000 6.90 4.92 0.00 4.02
296 297 1.224592 GGGAATCGTGGCATGGTCT 59.775 57.895 6.90 0.00 0.00 3.85
297 298 0.468226 GGGAATCGTGGCATGGTCTA 59.532 55.000 6.90 0.00 0.00 2.59
298 299 1.072331 GGGAATCGTGGCATGGTCTAT 59.928 52.381 6.90 0.00 0.00 1.98
299 300 2.487265 GGGAATCGTGGCATGGTCTATT 60.487 50.000 6.90 0.00 0.00 1.73
300 301 2.549754 GGAATCGTGGCATGGTCTATTG 59.450 50.000 6.90 0.00 0.00 1.90
301 302 2.260844 ATCGTGGCATGGTCTATTGG 57.739 50.000 6.90 0.00 0.00 3.16
302 303 0.908910 TCGTGGCATGGTCTATTGGT 59.091 50.000 6.90 0.00 0.00 3.67
303 304 1.134521 TCGTGGCATGGTCTATTGGTC 60.135 52.381 6.90 0.00 0.00 4.02
304 305 1.134401 CGTGGCATGGTCTATTGGTCT 60.134 52.381 0.00 0.00 0.00 3.85
305 306 2.680805 CGTGGCATGGTCTATTGGTCTT 60.681 50.000 0.00 0.00 0.00 3.01
306 307 3.431626 CGTGGCATGGTCTATTGGTCTTA 60.432 47.826 0.00 0.00 0.00 2.10
307 308 3.877508 GTGGCATGGTCTATTGGTCTTAC 59.122 47.826 0.00 0.00 0.00 2.34
308 309 3.521531 TGGCATGGTCTATTGGTCTTACA 59.478 43.478 0.00 0.00 0.00 2.41
309 310 3.877508 GGCATGGTCTATTGGTCTTACAC 59.122 47.826 0.00 0.00 0.00 2.90
310 311 4.513442 GCATGGTCTATTGGTCTTACACA 58.487 43.478 0.00 0.00 0.00 3.72
311 312 4.572389 GCATGGTCTATTGGTCTTACACAG 59.428 45.833 0.00 0.00 0.00 3.66
312 313 5.626809 GCATGGTCTATTGGTCTTACACAGA 60.627 44.000 0.00 0.00 0.00 3.41
313 314 6.586344 CATGGTCTATTGGTCTTACACAGAT 58.414 40.000 0.00 0.00 32.60 2.90
314 315 5.977635 TGGTCTATTGGTCTTACACAGATG 58.022 41.667 0.00 0.00 32.60 2.90
315 316 4.811557 GGTCTATTGGTCTTACACAGATGC 59.188 45.833 0.00 0.00 32.60 3.91
316 317 4.811557 GTCTATTGGTCTTACACAGATGCC 59.188 45.833 0.00 0.00 32.60 4.40
317 318 3.719268 ATTGGTCTTACACAGATGCCA 57.281 42.857 0.00 0.00 32.60 4.92
318 319 3.500448 TTGGTCTTACACAGATGCCAA 57.500 42.857 0.00 0.00 35.99 4.52
319 320 3.719268 TGGTCTTACACAGATGCCAAT 57.281 42.857 0.00 0.00 32.60 3.16
320 321 4.032960 TGGTCTTACACAGATGCCAATT 57.967 40.909 0.00 0.00 32.60 2.32
321 322 3.758023 TGGTCTTACACAGATGCCAATTG 59.242 43.478 0.00 0.00 32.60 2.32
322 323 4.009675 GGTCTTACACAGATGCCAATTGA 58.990 43.478 7.12 0.00 32.60 2.57
323 324 4.641989 GGTCTTACACAGATGCCAATTGAT 59.358 41.667 7.12 0.00 32.60 2.57
324 325 5.449588 GGTCTTACACAGATGCCAATTGATG 60.450 44.000 7.12 0.41 32.60 3.07
325 326 5.124457 GTCTTACACAGATGCCAATTGATGT 59.876 40.000 7.12 1.03 32.60 3.06
326 327 6.316140 GTCTTACACAGATGCCAATTGATGTA 59.684 38.462 7.12 1.65 32.60 2.29
327 328 7.012704 GTCTTACACAGATGCCAATTGATGTAT 59.987 37.037 7.12 0.00 32.60 2.29
328 329 8.210265 TCTTACACAGATGCCAATTGATGTATA 58.790 33.333 7.12 0.00 0.00 1.47
329 330 8.922931 TTACACAGATGCCAATTGATGTATAT 57.077 30.769 7.12 0.00 0.00 0.86
330 331 7.828508 ACACAGATGCCAATTGATGTATATT 57.171 32.000 7.12 0.00 0.00 1.28
331 332 8.241497 ACACAGATGCCAATTGATGTATATTT 57.759 30.769 7.12 0.00 0.00 1.40
332 333 9.353431 ACACAGATGCCAATTGATGTATATTTA 57.647 29.630 7.12 0.00 0.00 1.40
421 422 9.773328 TTTTTAGCTCAAATGATGTATCTTTCG 57.227 29.630 0.00 0.00 0.00 3.46
422 423 5.998454 AGCTCAAATGATGTATCTTTCGG 57.002 39.130 0.00 0.00 0.00 4.30
423 424 5.431765 AGCTCAAATGATGTATCTTTCGGT 58.568 37.500 0.00 0.00 0.00 4.69
424 425 5.882557 AGCTCAAATGATGTATCTTTCGGTT 59.117 36.000 0.00 0.00 0.00 4.44
425 426 7.047891 AGCTCAAATGATGTATCTTTCGGTTA 58.952 34.615 0.00 0.00 0.00 2.85
426 427 7.716998 AGCTCAAATGATGTATCTTTCGGTTAT 59.283 33.333 0.00 0.00 0.00 1.89
427 428 8.345565 GCTCAAATGATGTATCTTTCGGTTATT 58.654 33.333 0.00 0.00 0.00 1.40
431 432 9.801873 AAATGATGTATCTTTCGGTTATTTTGG 57.198 29.630 0.00 0.00 0.00 3.28
432 433 8.746052 ATGATGTATCTTTCGGTTATTTTGGA 57.254 30.769 0.00 0.00 0.00 3.53
433 434 8.208718 TGATGTATCTTTCGGTTATTTTGGAG 57.791 34.615 0.00 0.00 0.00 3.86
434 435 8.044309 TGATGTATCTTTCGGTTATTTTGGAGA 58.956 33.333 0.00 0.00 0.00 3.71
435 436 8.980481 ATGTATCTTTCGGTTATTTTGGAGAT 57.020 30.769 0.00 0.00 0.00 2.75
436 437 8.208718 TGTATCTTTCGGTTATTTTGGAGATG 57.791 34.615 0.00 0.00 0.00 2.90
437 438 7.827236 TGTATCTTTCGGTTATTTTGGAGATGT 59.173 33.333 0.00 0.00 0.00 3.06
438 439 6.737254 TCTTTCGGTTATTTTGGAGATGTC 57.263 37.500 0.00 0.00 0.00 3.06
439 440 5.646360 TCTTTCGGTTATTTTGGAGATGTCC 59.354 40.000 0.83 0.83 44.24 4.02
440 441 4.837093 TCGGTTATTTTGGAGATGTCCT 57.163 40.909 10.72 0.00 44.30 3.85
441 442 5.174037 TCGGTTATTTTGGAGATGTCCTT 57.826 39.130 10.72 0.00 44.30 3.36
442 443 4.941263 TCGGTTATTTTGGAGATGTCCTTG 59.059 41.667 10.72 0.00 44.30 3.61
443 444 4.700213 CGGTTATTTTGGAGATGTCCTTGT 59.300 41.667 10.72 0.00 44.30 3.16
444 445 5.163754 CGGTTATTTTGGAGATGTCCTTGTC 60.164 44.000 10.72 0.00 44.30 3.18
445 446 5.710099 GGTTATTTTGGAGATGTCCTTGTCA 59.290 40.000 10.72 0.00 44.30 3.58
446 447 6.208599 GGTTATTTTGGAGATGTCCTTGTCAA 59.791 38.462 10.72 0.00 44.30 3.18
447 448 7.093771 GGTTATTTTGGAGATGTCCTTGTCAAT 60.094 37.037 10.72 4.15 44.30 2.57
448 449 5.964958 TTTTGGAGATGTCCTTGTCAATC 57.035 39.130 10.72 0.00 44.30 2.67
449 450 3.634397 TGGAGATGTCCTTGTCAATCC 57.366 47.619 10.72 0.00 44.30 3.01
450 451 3.184628 TGGAGATGTCCTTGTCAATCCT 58.815 45.455 10.72 0.00 44.30 3.24
451 452 3.054875 TGGAGATGTCCTTGTCAATCCTG 60.055 47.826 10.72 0.00 44.30 3.86
452 453 2.941720 GAGATGTCCTTGTCAATCCTGC 59.058 50.000 0.00 0.00 0.00 4.85
453 454 2.575279 AGATGTCCTTGTCAATCCTGCT 59.425 45.455 0.00 0.00 0.00 4.24
454 455 2.479566 TGTCCTTGTCAATCCTGCTC 57.520 50.000 0.00 0.00 0.00 4.26
455 456 1.003580 TGTCCTTGTCAATCCTGCTCC 59.996 52.381 0.00 0.00 0.00 4.70
456 457 1.280421 GTCCTTGTCAATCCTGCTCCT 59.720 52.381 0.00 0.00 0.00 3.69
457 458 2.501723 GTCCTTGTCAATCCTGCTCCTA 59.498 50.000 0.00 0.00 0.00 2.94
458 459 3.055094 GTCCTTGTCAATCCTGCTCCTAA 60.055 47.826 0.00 0.00 0.00 2.69
459 460 3.587061 TCCTTGTCAATCCTGCTCCTAAA 59.413 43.478 0.00 0.00 0.00 1.85
460 461 3.691609 CCTTGTCAATCCTGCTCCTAAAC 59.308 47.826 0.00 0.00 0.00 2.01
461 462 4.326826 CTTGTCAATCCTGCTCCTAAACA 58.673 43.478 0.00 0.00 0.00 2.83
462 463 4.365514 TGTCAATCCTGCTCCTAAACAA 57.634 40.909 0.00 0.00 0.00 2.83
463 464 4.922206 TGTCAATCCTGCTCCTAAACAAT 58.078 39.130 0.00 0.00 0.00 2.71
464 465 4.943705 TGTCAATCCTGCTCCTAAACAATC 59.056 41.667 0.00 0.00 0.00 2.67
465 466 5.189180 GTCAATCCTGCTCCTAAACAATCT 58.811 41.667 0.00 0.00 0.00 2.40
466 467 5.649831 GTCAATCCTGCTCCTAAACAATCTT 59.350 40.000 0.00 0.00 0.00 2.40
467 468 5.882557 TCAATCCTGCTCCTAAACAATCTTC 59.117 40.000 0.00 0.00 0.00 2.87
468 469 5.707066 ATCCTGCTCCTAAACAATCTTCT 57.293 39.130 0.00 0.00 0.00 2.85
469 470 6.814954 ATCCTGCTCCTAAACAATCTTCTA 57.185 37.500 0.00 0.00 0.00 2.10
470 471 6.227298 TCCTGCTCCTAAACAATCTTCTAG 57.773 41.667 0.00 0.00 0.00 2.43
471 472 5.129485 TCCTGCTCCTAAACAATCTTCTAGG 59.871 44.000 0.00 0.00 33.52 3.02
472 473 5.359194 TGCTCCTAAACAATCTTCTAGGG 57.641 43.478 0.00 0.00 33.14 3.53
473 474 4.130857 GCTCCTAAACAATCTTCTAGGGC 58.869 47.826 0.00 0.00 33.14 5.19
474 475 4.141597 GCTCCTAAACAATCTTCTAGGGCT 60.142 45.833 0.00 0.00 33.14 5.19
475 476 5.630304 GCTCCTAAACAATCTTCTAGGGCTT 60.630 44.000 0.00 0.00 33.14 4.35
476 477 5.990668 TCCTAAACAATCTTCTAGGGCTTC 58.009 41.667 0.00 0.00 33.14 3.86
477 478 5.487488 TCCTAAACAATCTTCTAGGGCTTCA 59.513 40.000 0.00 0.00 33.14 3.02
478 479 5.819901 CCTAAACAATCTTCTAGGGCTTCAG 59.180 44.000 0.00 0.00 0.00 3.02
479 480 5.505181 AAACAATCTTCTAGGGCTTCAGA 57.495 39.130 0.00 0.00 0.00 3.27
480 481 5.505181 AACAATCTTCTAGGGCTTCAGAA 57.495 39.130 0.00 0.00 0.00 3.02
481 482 5.096443 ACAATCTTCTAGGGCTTCAGAAG 57.904 43.478 5.72 5.72 46.02 2.85
487 488 2.697751 TCTAGGGCTTCAGAAGAGATGC 59.302 50.000 14.86 0.00 37.80 3.91
491 492 1.377536 GCTTCAGAAGAGATGCCACC 58.622 55.000 14.86 0.00 33.86 4.61
492 493 2.016096 GCTTCAGAAGAGATGCCACCC 61.016 57.143 14.86 0.00 33.86 4.61
493 494 0.250234 TTCAGAAGAGATGCCACCCG 59.750 55.000 0.00 0.00 0.00 5.28
494 495 0.614697 TCAGAAGAGATGCCACCCGA 60.615 55.000 0.00 0.00 0.00 5.14
495 496 0.179089 CAGAAGAGATGCCACCCGAG 60.179 60.000 0.00 0.00 0.00 4.63
496 497 0.324738 AGAAGAGATGCCACCCGAGA 60.325 55.000 0.00 0.00 0.00 4.04
497 498 0.179097 GAAGAGATGCCACCCGAGAC 60.179 60.000 0.00 0.00 0.00 3.36
498 499 0.904865 AAGAGATGCCACCCGAGACA 60.905 55.000 0.00 0.00 0.00 3.41
499 500 0.904865 AGAGATGCCACCCGAGACAA 60.905 55.000 0.00 0.00 0.00 3.18
500 501 0.036388 GAGATGCCACCCGAGACAAA 60.036 55.000 0.00 0.00 0.00 2.83
501 502 0.620556 AGATGCCACCCGAGACAAAT 59.379 50.000 0.00 0.00 0.00 2.32
502 503 1.004745 AGATGCCACCCGAGACAAATT 59.995 47.619 0.00 0.00 0.00 1.82
503 504 1.818674 GATGCCACCCGAGACAAATTT 59.181 47.619 0.00 0.00 0.00 1.82
504 505 1.698506 TGCCACCCGAGACAAATTTT 58.301 45.000 0.00 0.00 0.00 1.82
505 506 1.339610 TGCCACCCGAGACAAATTTTG 59.660 47.619 7.59 7.59 0.00 2.44
506 507 1.336795 GCCACCCGAGACAAATTTTGG 60.337 52.381 13.42 0.00 34.12 3.28
507 508 1.336795 CCACCCGAGACAAATTTTGGC 60.337 52.381 13.42 10.43 39.66 4.52
527 528 5.719173 TGGCTTACAAAATGATACCTTTGC 58.281 37.500 0.00 0.00 36.24 3.68
528 529 5.244851 TGGCTTACAAAATGATACCTTTGCA 59.755 36.000 0.00 0.00 36.24 4.08
529 530 6.162777 GGCTTACAAAATGATACCTTTGCAA 58.837 36.000 0.00 0.00 36.24 4.08
530 531 6.818142 GGCTTACAAAATGATACCTTTGCAAT 59.182 34.615 0.00 0.00 36.24 3.56
531 532 7.978975 GGCTTACAAAATGATACCTTTGCAATA 59.021 33.333 0.00 0.00 36.24 1.90
532 533 9.533253 GCTTACAAAATGATACCTTTGCAATAT 57.467 29.630 0.00 0.00 36.24 1.28
541 542 8.677148 TGATACCTTTGCAATATACTTTCTCC 57.323 34.615 0.00 0.00 0.00 3.71
542 543 8.271458 TGATACCTTTGCAATATACTTTCTCCA 58.729 33.333 0.00 0.00 0.00 3.86
543 544 9.289782 GATACCTTTGCAATATACTTTCTCCAT 57.710 33.333 0.00 0.00 0.00 3.41
544 545 7.961326 ACCTTTGCAATATACTTTCTCCATT 57.039 32.000 0.00 0.00 0.00 3.16
545 546 8.366359 ACCTTTGCAATATACTTTCTCCATTT 57.634 30.769 0.00 0.00 0.00 2.32
546 547 8.470002 ACCTTTGCAATATACTTTCTCCATTTC 58.530 33.333 0.00 0.00 0.00 2.17
547 548 8.469200 CCTTTGCAATATACTTTCTCCATTTCA 58.531 33.333 0.00 0.00 0.00 2.69
548 549 9.859427 CTTTGCAATATACTTTCTCCATTTCAA 57.141 29.630 0.00 0.00 0.00 2.69
559 560 9.136323 ACTTTCTCCATTTCAAAATACTTGACT 57.864 29.630 0.00 0.00 0.00 3.41
560 561 9.971922 CTTTCTCCATTTCAAAATACTTGACTT 57.028 29.630 0.00 0.00 0.00 3.01
561 562 9.965824 TTTCTCCATTTCAAAATACTTGACTTC 57.034 29.630 0.00 0.00 0.00 3.01
562 563 8.110860 TCTCCATTTCAAAATACTTGACTTCC 57.889 34.615 0.00 0.00 0.00 3.46
563 564 7.723616 TCTCCATTTCAAAATACTTGACTTCCA 59.276 33.333 0.00 0.00 0.00 3.53
564 565 8.421249 TCCATTTCAAAATACTTGACTTCCAT 57.579 30.769 0.00 0.00 0.00 3.41
565 566 8.869109 TCCATTTCAAAATACTTGACTTCCATT 58.131 29.630 0.00 0.00 0.00 3.16
566 567 9.492973 CCATTTCAAAATACTTGACTTCCATTT 57.507 29.630 0.00 0.00 0.00 2.32
569 570 9.883142 TTTCAAAATACTTGACTTCCATTTGTT 57.117 25.926 0.00 0.00 0.00 2.83
570 571 9.528018 TTCAAAATACTTGACTTCCATTTGTTC 57.472 29.630 0.00 0.00 0.00 3.18
571 572 8.690884 TCAAAATACTTGACTTCCATTTGTTCA 58.309 29.630 0.00 0.00 0.00 3.18
572 573 9.311916 CAAAATACTTGACTTCCATTTGTTCAA 57.688 29.630 0.00 0.00 0.00 2.69
573 574 9.883142 AAAATACTTGACTTCCATTTGTTCAAA 57.117 25.926 0.44 0.44 0.00 2.69
574 575 9.883142 AAATACTTGACTTCCATTTGTTCAAAA 57.117 25.926 2.11 0.00 0.00 2.44
575 576 9.883142 AATACTTGACTTCCATTTGTTCAAAAA 57.117 25.926 2.11 0.00 0.00 1.94
577 578 8.200364 ACTTGACTTCCATTTGTTCAAAAATG 57.800 30.769 2.11 3.25 43.94 2.32
578 579 8.040132 ACTTGACTTCCATTTGTTCAAAAATGA 58.960 29.630 10.44 0.00 46.13 2.57
579 580 8.783833 TTGACTTCCATTTGTTCAAAAATGAA 57.216 26.923 10.44 5.19 46.13 2.57
580 581 8.961294 TGACTTCCATTTGTTCAAAAATGAAT 57.039 26.923 10.44 0.00 46.13 2.57
581 582 8.828644 TGACTTCCATTTGTTCAAAAATGAATG 58.171 29.630 10.44 0.00 46.13 2.67
582 583 8.735692 ACTTCCATTTGTTCAAAAATGAATGT 57.264 26.923 10.44 0.00 46.13 2.71
583 584 8.614346 ACTTCCATTTGTTCAAAAATGAATGTG 58.386 29.630 10.44 0.00 46.13 3.21
584 585 8.503458 TTCCATTTGTTCAAAAATGAATGTGT 57.497 26.923 10.44 0.00 46.13 3.72
585 586 8.140677 TCCATTTGTTCAAAAATGAATGTGTC 57.859 30.769 10.44 0.00 46.13 3.67
586 587 7.986320 TCCATTTGTTCAAAAATGAATGTGTCT 59.014 29.630 10.44 0.00 46.13 3.41
587 588 9.258826 CCATTTGTTCAAAAATGAATGTGTCTA 57.741 29.630 10.44 0.00 46.13 2.59
643 644 9.787532 ATTTTAACAAATGGAAGACATGTATCG 57.212 29.630 0.00 0.00 40.44 2.92
644 645 7.915293 TTAACAAATGGAAGACATGTATCGT 57.085 32.000 0.00 0.00 40.44 3.73
645 646 5.801350 ACAAATGGAAGACATGTATCGTG 57.199 39.130 0.00 0.66 40.44 4.35
646 647 4.635765 ACAAATGGAAGACATGTATCGTGG 59.364 41.667 0.00 0.00 40.44 4.94
647 648 4.753516 AATGGAAGACATGTATCGTGGA 57.246 40.909 0.00 0.00 40.44 4.02
648 649 4.753516 ATGGAAGACATGTATCGTGGAA 57.246 40.909 0.00 0.00 38.70 3.53
649 650 4.753516 TGGAAGACATGTATCGTGGAAT 57.246 40.909 0.00 0.00 0.00 3.01
650 651 5.097742 TGGAAGACATGTATCGTGGAATT 57.902 39.130 0.00 0.00 0.00 2.17
651 652 4.875536 TGGAAGACATGTATCGTGGAATTG 59.124 41.667 0.00 0.00 0.00 2.32
652 653 4.273480 GGAAGACATGTATCGTGGAATTGG 59.727 45.833 0.00 0.00 0.00 3.16
653 654 4.753516 AGACATGTATCGTGGAATTGGA 57.246 40.909 0.00 0.00 0.00 3.53
654 655 4.697514 AGACATGTATCGTGGAATTGGAG 58.302 43.478 0.00 0.00 0.00 3.86
655 656 3.808728 ACATGTATCGTGGAATTGGAGG 58.191 45.455 0.00 0.00 0.00 4.30
656 657 3.141398 CATGTATCGTGGAATTGGAGGG 58.859 50.000 0.00 0.00 0.00 4.30
657 658 2.473070 TGTATCGTGGAATTGGAGGGA 58.527 47.619 0.00 0.00 0.00 4.20
658 659 2.434336 TGTATCGTGGAATTGGAGGGAG 59.566 50.000 0.00 0.00 0.00 4.30
703 704 2.224450 ACCCCGCTCCTTAAATATTCCG 60.224 50.000 0.00 0.00 0.00 4.30
728 733 1.801771 CGGTCACACGCTTCCAAATTA 59.198 47.619 0.00 0.00 0.00 1.40
734 739 3.440173 CACACGCTTCCAAATTATCACCT 59.560 43.478 0.00 0.00 0.00 4.00
748 753 9.166173 CAAATTATCACCTAACTCACATCTCAA 57.834 33.333 0.00 0.00 0.00 3.02
754 759 6.042093 TCACCTAACTCACATCTCAACTCTTT 59.958 38.462 0.00 0.00 0.00 2.52
760 765 7.396540 ACTCACATCTCAACTCTTTGTTTTT 57.603 32.000 0.00 0.00 36.63 1.94
762 767 7.121168 ACTCACATCTCAACTCTTTGTTTTTCA 59.879 33.333 0.00 0.00 36.63 2.69
764 769 7.028962 CACATCTCAACTCTTTGTTTTTCACA 58.971 34.615 0.00 0.00 36.63 3.58
826 852 3.818121 TTGCCTTGTGCGTACGGCT 62.818 57.895 18.39 0.00 45.60 5.52
828 854 2.048597 CCTTGTGCGTACGGCTGA 60.049 61.111 18.39 0.00 44.05 4.26
867 893 2.171448 ACATCGAAATTCAGGGGAGGAG 59.829 50.000 0.00 0.00 0.00 3.69
877 903 2.040779 GGGAGGAGGGGTAGTGGG 60.041 72.222 0.00 0.00 0.00 4.61
889 923 1.710816 GTAGTGGGAGATCAGGGGAG 58.289 60.000 0.00 0.00 0.00 4.30
891 925 1.003573 GTGGGAGATCAGGGGAGGT 59.996 63.158 0.00 0.00 0.00 3.85
892 926 1.003442 TGGGAGATCAGGGGAGGTG 59.997 63.158 0.00 0.00 0.00 4.00
893 927 1.314867 GGGAGATCAGGGGAGGTGA 59.685 63.158 0.00 0.00 0.00 4.02
894 928 0.326618 GGGAGATCAGGGGAGGTGAA 60.327 60.000 0.00 0.00 0.00 3.18
901 935 3.015753 GGGGAGGTGAAGGGGGTC 61.016 72.222 0.00 0.00 0.00 4.46
921 955 7.069826 GGGGGTCATGATTTCATTCATAAAGAA 59.930 37.037 0.00 0.00 41.28 2.52
953 987 4.303853 CGATCGCGTCCTAACCAG 57.696 61.111 5.77 0.00 0.00 4.00
1236 1276 1.219393 CGAGGAGAAGGCCAAGGTC 59.781 63.158 5.01 0.00 0.00 3.85
1414 1454 4.154918 GTCCTTACTCTGCTTCAATTGTGG 59.845 45.833 5.13 0.92 0.00 4.17
1420 1460 5.316167 ACTCTGCTTCAATTGTGGATTGTA 58.684 37.500 5.13 0.00 44.46 2.41
1421 1461 5.948162 ACTCTGCTTCAATTGTGGATTGTAT 59.052 36.000 5.13 0.00 44.46 2.29
1422 1462 7.112122 ACTCTGCTTCAATTGTGGATTGTATA 58.888 34.615 5.13 0.00 44.46 1.47
1494 1537 3.006247 GAGACAGGCAGAACTCCATTTC 58.994 50.000 0.00 0.00 0.00 2.17
1495 1538 2.087646 GACAGGCAGAACTCCATTTCC 58.912 52.381 0.00 0.00 0.00 3.13
1496 1539 1.272147 ACAGGCAGAACTCCATTTCCC 60.272 52.381 0.00 0.00 0.00 3.97
1497 1540 0.332972 AGGCAGAACTCCATTTCCCC 59.667 55.000 0.00 0.00 0.00 4.81
1541 1593 9.025041 CCCCTGTCTTATAAACTGAAAGAAAAT 57.975 33.333 0.00 0.00 37.43 1.82
1611 1663 2.285592 TGGGGCTGCTCATCCAGA 60.286 61.111 0.21 0.00 34.77 3.86
2149 2205 4.279671 CACCCATTACGAGATCTAGCTTCT 59.720 45.833 2.33 0.00 0.00 2.85
2171 2227 6.249192 TCTATGATCCATGGGTACTCTGTAG 58.751 44.000 13.02 10.17 0.00 2.74
2172 2228 4.265856 TGATCCATGGGTACTCTGTAGT 57.734 45.455 13.02 0.00 39.91 2.73
2173 2229 4.215908 TGATCCATGGGTACTCTGTAGTC 58.784 47.826 13.02 0.00 37.15 2.59
2174 2230 4.079154 TGATCCATGGGTACTCTGTAGTCT 60.079 45.833 13.02 0.00 37.15 3.24
2175 2231 3.632333 TCCATGGGTACTCTGTAGTCTG 58.368 50.000 13.02 0.00 37.15 3.51
2176 2232 3.011369 TCCATGGGTACTCTGTAGTCTGT 59.989 47.826 13.02 0.00 37.15 3.41
2177 2233 4.228895 TCCATGGGTACTCTGTAGTCTGTA 59.771 45.833 13.02 0.00 37.15 2.74
2181 2237 3.377798 GGGTACTCTGTAGTCTGTACTGC 59.622 52.174 0.00 0.00 38.69 4.40
2189 2245 3.256383 TGTAGTCTGTACTGCGCCTTTTA 59.744 43.478 4.18 0.00 40.89 1.52
2204 2260 5.287035 GCGCCTTTTATTCTGTTCTCAAATG 59.713 40.000 0.00 0.00 0.00 2.32
2209 2265 7.540055 CCTTTTATTCTGTTCTCAAATGTCAGC 59.460 37.037 0.00 0.00 0.00 4.26
2235 2291 1.070134 TGTGGTGTGAACAGTAGCCTC 59.930 52.381 0.00 0.00 0.00 4.70
2236 2292 1.070134 GTGGTGTGAACAGTAGCCTCA 59.930 52.381 0.00 0.00 0.00 3.86
2344 2400 7.823745 AAAATATTATCCAGTTGGCCTACTG 57.176 36.000 32.69 32.69 44.07 2.74
2346 2402 1.879575 TATCCAGTTGGCCTACTGCT 58.120 50.000 33.80 25.81 43.31 4.24
2362 2418 1.895707 GCTGGCCGATTGGATCCAG 60.896 63.158 15.53 17.48 44.28 3.86
2363 2419 1.528824 CTGGCCGATTGGATCCAGT 59.471 57.895 15.53 12.79 39.45 4.00
2364 2420 0.533755 CTGGCCGATTGGATCCAGTC 60.534 60.000 23.82 23.82 39.45 3.51
2368 2424 4.464262 GATTGGATCCAGTCGGCC 57.536 61.111 20.21 0.00 0.00 6.13
2369 2425 1.832912 GATTGGATCCAGTCGGCCT 59.167 57.895 20.21 0.00 0.00 5.19
2370 2426 1.048601 GATTGGATCCAGTCGGCCTA 58.951 55.000 20.21 1.03 0.00 3.93
2371 2427 1.625818 GATTGGATCCAGTCGGCCTAT 59.374 52.381 20.21 6.26 0.00 2.57
2531 2761 6.191657 TGCACCCATCTATCTGTTGAATAT 57.808 37.500 0.00 0.00 0.00 1.28
3028 3281 0.879090 GTTGGTCGCGATCCCTTTTT 59.121 50.000 18.31 0.00 0.00 1.94
3142 3395 3.624777 CCACCAGCTTCCAGATGTTAAT 58.375 45.455 0.00 0.00 27.62 1.40
3143 3396 4.019174 CCACCAGCTTCCAGATGTTAATT 58.981 43.478 0.00 0.00 27.62 1.40
3144 3397 4.463891 CCACCAGCTTCCAGATGTTAATTT 59.536 41.667 0.00 0.00 27.62 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.902443 TGCTTCGACTACTTCCTGATAG 57.098 45.455 0.00 0.00 0.00 2.08
3 4 4.499183 CTTTGCTTCGACTACTTCCTGAT 58.501 43.478 0.00 0.00 0.00 2.90
5 6 2.996621 CCTTTGCTTCGACTACTTCCTG 59.003 50.000 0.00 0.00 0.00 3.86
6 7 2.897969 TCCTTTGCTTCGACTACTTCCT 59.102 45.455 0.00 0.00 0.00 3.36
9 10 2.609737 CCGTCCTTTGCTTCGACTACTT 60.610 50.000 0.00 0.00 0.00 2.24
10 11 1.067776 CCGTCCTTTGCTTCGACTACT 60.068 52.381 0.00 0.00 0.00 2.57
11 12 1.068055 TCCGTCCTTTGCTTCGACTAC 60.068 52.381 0.00 0.00 0.00 2.73
12 13 1.250328 TCCGTCCTTTGCTTCGACTA 58.750 50.000 0.00 0.00 0.00 2.59
13 14 0.608640 ATCCGTCCTTTGCTTCGACT 59.391 50.000 0.00 0.00 0.00 4.18
14 15 1.000145 GATCCGTCCTTTGCTTCGAC 59.000 55.000 0.00 0.00 0.00 4.20
15 16 0.606096 TGATCCGTCCTTTGCTTCGA 59.394 50.000 0.00 0.00 0.00 3.71
16 17 1.394917 CTTGATCCGTCCTTTGCTTCG 59.605 52.381 0.00 0.00 0.00 3.79
17 18 2.675348 CTCTTGATCCGTCCTTTGCTTC 59.325 50.000 0.00 0.00 0.00 3.86
18 19 2.039084 ACTCTTGATCCGTCCTTTGCTT 59.961 45.455 0.00 0.00 0.00 3.91
19 20 1.625818 ACTCTTGATCCGTCCTTTGCT 59.374 47.619 0.00 0.00 0.00 3.91
20 21 2.100605 ACTCTTGATCCGTCCTTTGC 57.899 50.000 0.00 0.00 0.00 3.68
21 22 4.082190 TGACTACTCTTGATCCGTCCTTTG 60.082 45.833 0.00 0.00 0.00 2.77
22 23 4.087182 TGACTACTCTTGATCCGTCCTTT 58.913 43.478 0.00 0.00 0.00 3.11
23 24 3.698289 TGACTACTCTTGATCCGTCCTT 58.302 45.455 0.00 0.00 0.00 3.36
24 25 3.367646 TGACTACTCTTGATCCGTCCT 57.632 47.619 0.00 0.00 0.00 3.85
25 26 3.381908 ACATGACTACTCTTGATCCGTCC 59.618 47.826 0.00 0.00 0.00 4.79
26 27 4.640789 ACATGACTACTCTTGATCCGTC 57.359 45.455 0.00 0.00 0.00 4.79
27 28 4.462834 TCAACATGACTACTCTTGATCCGT 59.537 41.667 0.00 0.00 0.00 4.69
28 29 4.998788 TCAACATGACTACTCTTGATCCG 58.001 43.478 0.00 0.00 0.00 4.18
29 30 6.039616 GTCTCAACATGACTACTCTTGATCC 58.960 44.000 0.00 0.00 0.00 3.36
30 31 5.741510 CGTCTCAACATGACTACTCTTGATC 59.258 44.000 0.00 0.00 32.70 2.92
31 32 5.184096 ACGTCTCAACATGACTACTCTTGAT 59.816 40.000 0.00 0.00 32.70 2.57
32 33 4.519350 ACGTCTCAACATGACTACTCTTGA 59.481 41.667 0.00 0.00 32.70 3.02
33 34 4.799678 ACGTCTCAACATGACTACTCTTG 58.200 43.478 0.00 0.00 32.70 3.02
34 35 5.455056 AACGTCTCAACATGACTACTCTT 57.545 39.130 0.00 0.00 32.70 2.85
35 36 4.082679 GGAACGTCTCAACATGACTACTCT 60.083 45.833 0.00 0.00 32.70 3.24
36 37 4.167268 GGAACGTCTCAACATGACTACTC 58.833 47.826 0.00 0.00 32.70 2.59
37 38 3.056749 GGGAACGTCTCAACATGACTACT 60.057 47.826 0.00 0.00 32.70 2.57
38 39 3.251571 GGGAACGTCTCAACATGACTAC 58.748 50.000 0.00 0.00 32.70 2.73
39 40 2.894765 TGGGAACGTCTCAACATGACTA 59.105 45.455 0.00 0.00 32.70 2.59
40 41 1.691976 TGGGAACGTCTCAACATGACT 59.308 47.619 0.00 0.00 32.70 3.41
41 42 2.163818 TGGGAACGTCTCAACATGAC 57.836 50.000 0.00 0.00 0.00 3.06
42 43 2.920724 TTGGGAACGTCTCAACATGA 57.079 45.000 0.00 0.00 30.66 3.07
43 44 3.980646 TTTTGGGAACGTCTCAACATG 57.019 42.857 0.00 0.00 36.43 3.21
62 63 4.042435 TCGGGAGAAGGGTGATAAGTTTTT 59.958 41.667 0.00 0.00 34.75 1.94
63 64 3.585732 TCGGGAGAAGGGTGATAAGTTTT 59.414 43.478 0.00 0.00 34.75 2.43
64 65 3.178865 TCGGGAGAAGGGTGATAAGTTT 58.821 45.455 0.00 0.00 34.75 2.66
65 66 2.829023 TCGGGAGAAGGGTGATAAGTT 58.171 47.619 0.00 0.00 34.75 2.66
66 67 2.544844 TCGGGAGAAGGGTGATAAGT 57.455 50.000 0.00 0.00 34.75 2.24
67 68 2.548920 GCATCGGGAGAAGGGTGATAAG 60.549 54.545 0.00 0.00 45.37 1.73
68 69 1.416401 GCATCGGGAGAAGGGTGATAA 59.584 52.381 0.00 0.00 45.37 1.75
69 70 1.048601 GCATCGGGAGAAGGGTGATA 58.951 55.000 0.00 0.00 45.37 2.15
70 71 0.982852 TGCATCGGGAGAAGGGTGAT 60.983 55.000 0.00 0.00 45.37 3.06
71 72 1.612146 TGCATCGGGAGAAGGGTGA 60.612 57.895 0.00 0.00 45.37 4.02
72 73 1.153289 CTGCATCGGGAGAAGGGTG 60.153 63.158 0.00 0.00 45.37 4.61
73 74 2.370445 CCTGCATCGGGAGAAGGGT 61.370 63.158 0.00 0.00 45.37 4.34
74 75 1.414061 ATCCTGCATCGGGAGAAGGG 61.414 60.000 0.00 0.00 42.74 3.95
75 76 0.034616 GATCCTGCATCGGGAGAAGG 59.965 60.000 0.00 0.00 42.74 3.46
76 77 1.000731 GAGATCCTGCATCGGGAGAAG 59.999 57.143 0.00 0.00 42.74 2.85
77 78 1.043816 GAGATCCTGCATCGGGAGAA 58.956 55.000 0.00 0.00 42.74 2.87
78 79 0.106015 TGAGATCCTGCATCGGGAGA 60.106 55.000 0.00 0.00 42.74 3.71
79 80 0.755079 TTGAGATCCTGCATCGGGAG 59.245 55.000 0.00 0.00 42.74 4.30
80 81 1.139654 CTTTGAGATCCTGCATCGGGA 59.860 52.381 0.00 0.00 43.71 5.14
81 82 1.590932 CTTTGAGATCCTGCATCGGG 58.409 55.000 0.00 0.00 36.50 5.14
82 83 1.139654 TCCTTTGAGATCCTGCATCGG 59.860 52.381 0.00 0.00 36.50 4.18
83 84 2.208431 GTCCTTTGAGATCCTGCATCG 58.792 52.381 0.00 0.00 36.50 3.84
84 85 2.208431 CGTCCTTTGAGATCCTGCATC 58.792 52.381 0.00 0.00 0.00 3.91
85 86 1.134280 CCGTCCTTTGAGATCCTGCAT 60.134 52.381 0.00 0.00 0.00 3.96
86 87 0.250234 CCGTCCTTTGAGATCCTGCA 59.750 55.000 0.00 0.00 0.00 4.41
87 88 0.462759 CCCGTCCTTTGAGATCCTGC 60.463 60.000 0.00 0.00 0.00 4.85
88 89 0.179000 CCCCGTCCTTTGAGATCCTG 59.821 60.000 0.00 0.00 0.00 3.86
89 90 0.252742 ACCCCGTCCTTTGAGATCCT 60.253 55.000 0.00 0.00 0.00 3.24
90 91 0.618981 AACCCCGTCCTTTGAGATCC 59.381 55.000 0.00 0.00 0.00 3.36
91 92 1.407025 GGAACCCCGTCCTTTGAGATC 60.407 57.143 0.00 0.00 34.56 2.75
92 93 0.618981 GGAACCCCGTCCTTTGAGAT 59.381 55.000 0.00 0.00 34.56 2.75
93 94 2.063774 GGAACCCCGTCCTTTGAGA 58.936 57.895 0.00 0.00 34.56 3.27
94 95 4.716003 GGAACCCCGTCCTTTGAG 57.284 61.111 0.00 0.00 34.56 3.02
106 107 4.475135 GAGCAGGCCTCCGGAACC 62.475 72.222 14.18 14.18 34.35 3.62
107 108 2.860972 GAAGAGCAGGCCTCCGGAAC 62.861 65.000 0.00 0.00 41.74 3.62
108 109 2.607750 AAGAGCAGGCCTCCGGAA 60.608 61.111 0.00 0.00 41.74 4.30
109 110 3.077556 GAAGAGCAGGCCTCCGGA 61.078 66.667 0.00 2.93 41.74 5.14
110 111 4.168291 GGAAGAGCAGGCCTCCGG 62.168 72.222 0.00 0.00 41.74 5.14
111 112 4.521062 CGGAAGAGCAGGCCTCCG 62.521 72.222 13.72 13.72 41.74 4.63
112 113 3.077556 TCGGAAGAGCAGGCCTCC 61.078 66.667 0.00 0.00 41.74 4.30
113 114 2.185608 GTCGGAAGAGCAGGCCTC 59.814 66.667 0.00 0.00 43.49 4.70
121 122 2.027625 GCACGGTTGGTCGGAAGAG 61.028 63.158 0.00 0.00 43.49 2.85
122 123 2.029964 GCACGGTTGGTCGGAAGA 59.970 61.111 0.00 0.00 38.16 2.87
123 124 2.280524 TGCACGGTTGGTCGGAAG 60.281 61.111 0.00 0.00 0.00 3.46
124 125 2.589442 GTGCACGGTTGGTCGGAA 60.589 61.111 0.00 0.00 0.00 4.30
125 126 4.953868 CGTGCACGGTTGGTCGGA 62.954 66.667 31.15 0.00 35.37 4.55
128 129 4.012895 CTGCGTGCACGGTTGGTC 62.013 66.667 37.47 21.45 40.23 4.02
129 130 4.849310 ACTGCGTGCACGGTTGGT 62.849 61.111 37.47 16.10 40.23 3.67
130 131 4.012895 GACTGCGTGCACGGTTGG 62.013 66.667 37.47 12.79 40.23 3.77
131 132 2.498761 GATGACTGCGTGCACGGTTG 62.499 60.000 37.47 13.19 40.23 3.77
132 133 2.280797 ATGACTGCGTGCACGGTT 60.281 55.556 37.47 13.41 40.23 4.44
133 134 2.738521 GATGACTGCGTGCACGGT 60.739 61.111 37.47 28.15 40.23 4.83
134 135 2.733671 CTGATGACTGCGTGCACGG 61.734 63.158 37.47 25.17 40.23 4.94
135 136 2.733671 CCTGATGACTGCGTGCACG 61.734 63.158 34.01 34.01 43.27 5.34
136 137 0.742281 ATCCTGATGACTGCGTGCAC 60.742 55.000 6.82 6.82 0.00 4.57
137 138 0.741927 CATCCTGATGACTGCGTGCA 60.742 55.000 0.70 0.00 41.20 4.57
138 139 1.434622 CCATCCTGATGACTGCGTGC 61.435 60.000 8.69 0.00 41.20 5.34
139 140 0.176449 TCCATCCTGATGACTGCGTG 59.824 55.000 8.69 0.00 41.20 5.34
140 141 0.904649 TTCCATCCTGATGACTGCGT 59.095 50.000 8.69 0.00 41.20 5.24
141 142 2.141517 GATTCCATCCTGATGACTGCG 58.858 52.381 8.69 0.00 41.20 5.18
142 143 2.141517 CGATTCCATCCTGATGACTGC 58.858 52.381 8.69 0.00 41.20 4.40
143 144 2.141517 GCGATTCCATCCTGATGACTG 58.858 52.381 8.69 0.00 41.20 3.51
144 145 1.071385 GGCGATTCCATCCTGATGACT 59.929 52.381 8.69 0.00 41.20 3.41
145 146 1.517242 GGCGATTCCATCCTGATGAC 58.483 55.000 8.69 0.00 41.20 3.06
146 147 0.033920 CGGCGATTCCATCCTGATGA 59.966 55.000 0.00 0.00 41.20 2.92
147 148 0.952497 CCGGCGATTCCATCCTGATG 60.952 60.000 9.30 0.00 38.51 3.07
148 149 1.121407 TCCGGCGATTCCATCCTGAT 61.121 55.000 9.30 0.00 34.01 2.90
149 150 1.334384 TTCCGGCGATTCCATCCTGA 61.334 55.000 9.30 0.00 34.01 3.86
150 151 0.882042 CTTCCGGCGATTCCATCCTG 60.882 60.000 9.30 0.00 34.01 3.86
151 152 1.447643 CTTCCGGCGATTCCATCCT 59.552 57.895 9.30 0.00 34.01 3.24
152 153 2.254464 GCTTCCGGCGATTCCATCC 61.254 63.158 9.30 0.00 34.01 3.51
153 154 1.502163 CTGCTTCCGGCGATTCCATC 61.502 60.000 9.30 0.00 45.43 3.51
154 155 1.524621 CTGCTTCCGGCGATTCCAT 60.525 57.895 9.30 0.00 45.43 3.41
155 156 2.125147 CTGCTTCCGGCGATTCCA 60.125 61.111 9.30 0.00 45.43 3.53
156 157 3.577313 GCTGCTTCCGGCGATTCC 61.577 66.667 9.30 0.00 45.43 3.01
157 158 2.819595 TGCTGCTTCCGGCGATTC 60.820 61.111 9.30 0.00 46.59 2.52
158 159 3.127533 GTGCTGCTTCCGGCGATT 61.128 61.111 9.30 0.00 46.59 3.34
159 160 3.687321 ATGTGCTGCTTCCGGCGAT 62.687 57.895 9.30 0.00 46.59 4.58
160 161 2.514510 TAATGTGCTGCTTCCGGCGA 62.515 55.000 9.30 0.00 46.59 5.54
161 162 1.643868 TTAATGTGCTGCTTCCGGCG 61.644 55.000 0.00 0.00 46.59 6.46
162 163 0.525761 TTTAATGTGCTGCTTCCGGC 59.474 50.000 0.00 0.00 43.83 6.13
163 164 2.487762 TCTTTTAATGTGCTGCTTCCGG 59.512 45.455 0.00 0.00 0.00 5.14
164 165 3.829886 TCTTTTAATGTGCTGCTTCCG 57.170 42.857 0.00 0.00 0.00 4.30
165 166 8.707938 ATTATTTCTTTTAATGTGCTGCTTCC 57.292 30.769 0.00 0.00 0.00 3.46
179 180 9.338622 CCCTAACCGTCATCTATTATTTCTTTT 57.661 33.333 0.00 0.00 0.00 2.27
180 181 8.491958 ACCCTAACCGTCATCTATTATTTCTTT 58.508 33.333 0.00 0.00 0.00 2.52
181 182 8.030913 ACCCTAACCGTCATCTATTATTTCTT 57.969 34.615 0.00 0.00 0.00 2.52
182 183 7.613551 ACCCTAACCGTCATCTATTATTTCT 57.386 36.000 0.00 0.00 0.00 2.52
183 184 7.307811 GCAACCCTAACCGTCATCTATTATTTC 60.308 40.741 0.00 0.00 0.00 2.17
184 185 6.485648 GCAACCCTAACCGTCATCTATTATTT 59.514 38.462 0.00 0.00 0.00 1.40
185 186 5.995897 GCAACCCTAACCGTCATCTATTATT 59.004 40.000 0.00 0.00 0.00 1.40
186 187 5.071250 TGCAACCCTAACCGTCATCTATTAT 59.929 40.000 0.00 0.00 0.00 1.28
187 188 4.406326 TGCAACCCTAACCGTCATCTATTA 59.594 41.667 0.00 0.00 0.00 0.98
188 189 3.199071 TGCAACCCTAACCGTCATCTATT 59.801 43.478 0.00 0.00 0.00 1.73
189 190 2.769663 TGCAACCCTAACCGTCATCTAT 59.230 45.455 0.00 0.00 0.00 1.98
190 191 2.181125 TGCAACCCTAACCGTCATCTA 58.819 47.619 0.00 0.00 0.00 1.98
191 192 0.981183 TGCAACCCTAACCGTCATCT 59.019 50.000 0.00 0.00 0.00 2.90
192 193 2.038387 ATGCAACCCTAACCGTCATC 57.962 50.000 0.00 0.00 0.00 2.92
193 194 2.158813 CCTATGCAACCCTAACCGTCAT 60.159 50.000 0.00 0.00 0.00 3.06
194 195 1.208535 CCTATGCAACCCTAACCGTCA 59.791 52.381 0.00 0.00 0.00 4.35
195 196 1.474498 CCCTATGCAACCCTAACCGTC 60.474 57.143 0.00 0.00 0.00 4.79
196 197 0.544697 CCCTATGCAACCCTAACCGT 59.455 55.000 0.00 0.00 0.00 4.83
197 198 0.834612 TCCCTATGCAACCCTAACCG 59.165 55.000 0.00 0.00 0.00 4.44
198 199 1.143073 CCTCCCTATGCAACCCTAACC 59.857 57.143 0.00 0.00 0.00 2.85
199 200 1.143073 CCCTCCCTATGCAACCCTAAC 59.857 57.143 0.00 0.00 0.00 2.34
200 201 1.010294 TCCCTCCCTATGCAACCCTAA 59.990 52.381 0.00 0.00 0.00 2.69
201 202 0.645496 TCCCTCCCTATGCAACCCTA 59.355 55.000 0.00 0.00 0.00 3.53
202 203 0.695803 CTCCCTCCCTATGCAACCCT 60.696 60.000 0.00 0.00 0.00 4.34
203 204 0.988678 ACTCCCTCCCTATGCAACCC 60.989 60.000 0.00 0.00 0.00 4.11
204 205 0.181350 CACTCCCTCCCTATGCAACC 59.819 60.000 0.00 0.00 0.00 3.77
205 206 1.139853 CTCACTCCCTCCCTATGCAAC 59.860 57.143 0.00 0.00 0.00 4.17
206 207 1.273838 ACTCACTCCCTCCCTATGCAA 60.274 52.381 0.00 0.00 0.00 4.08
207 208 0.339859 ACTCACTCCCTCCCTATGCA 59.660 55.000 0.00 0.00 0.00 3.96
208 209 1.044611 GACTCACTCCCTCCCTATGC 58.955 60.000 0.00 0.00 0.00 3.14
209 210 1.710816 GGACTCACTCCCTCCCTATG 58.289 60.000 0.00 0.00 31.83 2.23
210 211 0.186386 CGGACTCACTCCCTCCCTAT 59.814 60.000 0.00 0.00 35.21 2.57
211 212 1.212934 ACGGACTCACTCCCTCCCTA 61.213 60.000 0.00 0.00 35.21 3.53
212 213 2.095438 AACGGACTCACTCCCTCCCT 62.095 60.000 0.00 0.00 35.21 4.20
213 214 1.609794 AACGGACTCACTCCCTCCC 60.610 63.158 0.00 0.00 35.21 4.30
214 215 1.592223 CAACGGACTCACTCCCTCC 59.408 63.158 0.00 0.00 35.21 4.30
215 216 1.592223 CCAACGGACTCACTCCCTC 59.408 63.158 0.00 0.00 35.21 4.30
216 217 2.584391 GCCAACGGACTCACTCCCT 61.584 63.158 0.00 0.00 35.21 4.20
217 218 2.047179 GCCAACGGACTCACTCCC 60.047 66.667 0.00 0.00 35.21 4.30
218 219 2.047179 GGCCAACGGACTCACTCC 60.047 66.667 0.00 0.00 35.33 3.85
219 220 2.432628 CGGCCAACGGACTCACTC 60.433 66.667 2.24 0.00 39.42 3.51
220 221 4.681978 GCGGCCAACGGACTCACT 62.682 66.667 2.24 0.00 44.51 3.41
221 222 4.980805 TGCGGCCAACGGACTCAC 62.981 66.667 2.24 0.00 44.51 3.51
236 237 3.982241 GTTGGCCAGTGCAGGTGC 61.982 66.667 5.11 0.00 40.13 5.01
237 238 3.663176 CGTTGGCCAGTGCAGGTG 61.663 66.667 5.11 0.00 40.13 4.00
248 249 1.337823 ACATATATCGGAGGCGTTGGC 60.338 52.381 0.00 0.00 38.90 4.52
249 250 2.607187 GACATATATCGGAGGCGTTGG 58.393 52.381 0.00 0.00 0.00 3.77
250 251 2.251040 CGACATATATCGGAGGCGTTG 58.749 52.381 0.00 0.00 38.47 4.10
251 252 1.884579 ACGACATATATCGGAGGCGTT 59.115 47.619 8.47 0.00 46.56 4.84
252 253 1.467734 GACGACATATATCGGAGGCGT 59.532 52.381 8.47 1.58 46.56 5.68
253 254 1.529214 CGACGACATATATCGGAGGCG 60.529 57.143 8.47 2.48 46.56 5.52
254 255 1.736126 TCGACGACATATATCGGAGGC 59.264 52.381 8.47 0.00 46.56 4.70
255 256 3.001414 AGTCGACGACATATATCGGAGG 58.999 50.000 28.31 0.00 46.56 4.30
256 257 4.268167 CCTAGTCGACGACATATATCGGAG 59.732 50.000 28.31 10.97 46.56 4.63
257 258 4.179298 CCTAGTCGACGACATATATCGGA 58.821 47.826 28.31 0.00 46.56 4.55
258 259 3.309138 CCCTAGTCGACGACATATATCGG 59.691 52.174 28.31 13.07 46.56 4.18
260 261 6.509837 CGATTCCCTAGTCGACGACATATATC 60.510 46.154 28.31 19.24 40.11 1.63
261 262 5.293814 CGATTCCCTAGTCGACGACATATAT 59.706 44.000 28.31 13.77 40.11 0.86
262 263 4.628766 CGATTCCCTAGTCGACGACATATA 59.371 45.833 28.31 12.25 40.11 0.86
263 264 3.436015 CGATTCCCTAGTCGACGACATAT 59.564 47.826 28.31 11.74 40.11 1.78
264 265 2.804527 CGATTCCCTAGTCGACGACATA 59.195 50.000 28.31 16.30 40.11 2.29
265 266 1.602851 CGATTCCCTAGTCGACGACAT 59.397 52.381 28.31 16.06 40.11 3.06
266 267 1.012086 CGATTCCCTAGTCGACGACA 58.988 55.000 28.31 14.02 40.11 4.35
267 268 1.012841 ACGATTCCCTAGTCGACGAC 58.987 55.000 20.25 20.25 40.11 4.34
268 269 1.012086 CACGATTCCCTAGTCGACGA 58.988 55.000 10.46 3.61 40.11 4.20
269 270 0.029035 CCACGATTCCCTAGTCGACG 59.971 60.000 10.46 0.00 40.11 5.12
270 271 0.248949 GCCACGATTCCCTAGTCGAC 60.249 60.000 7.70 7.70 40.11 4.20
271 272 0.681887 TGCCACGATTCCCTAGTCGA 60.682 55.000 7.40 0.00 40.11 4.20
272 273 0.389391 ATGCCACGATTCCCTAGTCG 59.611 55.000 0.00 0.00 43.13 4.18
273 274 1.541233 CCATGCCACGATTCCCTAGTC 60.541 57.143 0.00 0.00 0.00 2.59
274 275 0.469917 CCATGCCACGATTCCCTAGT 59.530 55.000 0.00 0.00 0.00 2.57
275 276 0.469917 ACCATGCCACGATTCCCTAG 59.530 55.000 0.00 0.00 0.00 3.02
276 277 0.468226 GACCATGCCACGATTCCCTA 59.532 55.000 0.00 0.00 0.00 3.53
277 278 1.224592 GACCATGCCACGATTCCCT 59.775 57.895 0.00 0.00 0.00 4.20
278 279 0.468226 TAGACCATGCCACGATTCCC 59.532 55.000 0.00 0.00 0.00 3.97
279 280 2.549754 CAATAGACCATGCCACGATTCC 59.450 50.000 0.00 0.00 0.00 3.01
280 281 2.549754 CCAATAGACCATGCCACGATTC 59.450 50.000 0.00 0.00 0.00 2.52
281 282 2.092429 ACCAATAGACCATGCCACGATT 60.092 45.455 0.00 0.00 0.00 3.34
282 283 1.490490 ACCAATAGACCATGCCACGAT 59.510 47.619 0.00 0.00 0.00 3.73
283 284 0.908910 ACCAATAGACCATGCCACGA 59.091 50.000 0.00 0.00 0.00 4.35
284 285 1.134401 AGACCAATAGACCATGCCACG 60.134 52.381 0.00 0.00 0.00 4.94
285 286 2.717639 AGACCAATAGACCATGCCAC 57.282 50.000 0.00 0.00 0.00 5.01
286 287 3.521531 TGTAAGACCAATAGACCATGCCA 59.478 43.478 0.00 0.00 0.00 4.92
287 288 3.877508 GTGTAAGACCAATAGACCATGCC 59.122 47.826 0.00 0.00 0.00 4.40
288 289 4.513442 TGTGTAAGACCAATAGACCATGC 58.487 43.478 0.00 0.00 0.00 4.06
289 290 5.977635 TCTGTGTAAGACCAATAGACCATG 58.022 41.667 0.00 0.00 0.00 3.66
290 291 6.586344 CATCTGTGTAAGACCAATAGACCAT 58.414 40.000 0.00 0.00 37.88 3.55
291 292 5.626809 GCATCTGTGTAAGACCAATAGACCA 60.627 44.000 0.00 0.00 37.88 4.02
292 293 4.811557 GCATCTGTGTAAGACCAATAGACC 59.188 45.833 0.00 0.00 37.88 3.85
293 294 4.811557 GGCATCTGTGTAAGACCAATAGAC 59.188 45.833 0.00 0.00 37.88 2.59
294 295 4.469586 TGGCATCTGTGTAAGACCAATAGA 59.530 41.667 0.00 0.00 37.88 1.98
295 296 4.769688 TGGCATCTGTGTAAGACCAATAG 58.230 43.478 0.00 0.00 37.88 1.73
296 297 4.835284 TGGCATCTGTGTAAGACCAATA 57.165 40.909 0.00 0.00 37.88 1.90
297 298 3.719268 TGGCATCTGTGTAAGACCAAT 57.281 42.857 0.00 0.00 37.88 3.16
298 299 3.500448 TTGGCATCTGTGTAAGACCAA 57.500 42.857 0.00 0.00 38.24 3.67
299 300 3.719268 ATTGGCATCTGTGTAAGACCA 57.281 42.857 0.00 0.00 37.88 4.02
300 301 4.009675 TCAATTGGCATCTGTGTAAGACC 58.990 43.478 5.42 0.00 37.88 3.85
301 302 5.124457 ACATCAATTGGCATCTGTGTAAGAC 59.876 40.000 5.42 0.00 37.88 3.01
302 303 5.255687 ACATCAATTGGCATCTGTGTAAGA 58.744 37.500 5.42 0.00 39.94 2.10
303 304 5.571784 ACATCAATTGGCATCTGTGTAAG 57.428 39.130 5.42 0.00 0.00 2.34
304 305 8.922931 ATATACATCAATTGGCATCTGTGTAA 57.077 30.769 5.42 0.00 0.00 2.41
305 306 8.922931 AATATACATCAATTGGCATCTGTGTA 57.077 30.769 5.42 5.55 0.00 2.90
306 307 7.828508 AATATACATCAATTGGCATCTGTGT 57.171 32.000 5.42 3.70 0.00 3.72
395 396 9.773328 CGAAAGATACATCATTTGAGCTAAAAA 57.227 29.630 0.00 0.00 0.00 1.94
396 397 8.397906 CCGAAAGATACATCATTTGAGCTAAAA 58.602 33.333 0.00 0.00 0.00 1.52
397 398 7.552687 ACCGAAAGATACATCATTTGAGCTAAA 59.447 33.333 0.00 0.00 0.00 1.85
398 399 7.047891 ACCGAAAGATACATCATTTGAGCTAA 58.952 34.615 0.00 0.00 0.00 3.09
399 400 6.582636 ACCGAAAGATACATCATTTGAGCTA 58.417 36.000 0.00 0.00 0.00 3.32
400 401 5.431765 ACCGAAAGATACATCATTTGAGCT 58.568 37.500 0.00 0.00 0.00 4.09
401 402 5.741388 ACCGAAAGATACATCATTTGAGC 57.259 39.130 0.00 0.00 0.00 4.26
405 406 9.801873 CCAAAATAACCGAAAGATACATCATTT 57.198 29.630 0.00 0.00 0.00 2.32
406 407 9.184523 TCCAAAATAACCGAAAGATACATCATT 57.815 29.630 0.00 0.00 0.00 2.57
407 408 8.746052 TCCAAAATAACCGAAAGATACATCAT 57.254 30.769 0.00 0.00 0.00 2.45
408 409 8.044309 TCTCCAAAATAACCGAAAGATACATCA 58.956 33.333 0.00 0.00 0.00 3.07
409 410 8.433421 TCTCCAAAATAACCGAAAGATACATC 57.567 34.615 0.00 0.00 0.00 3.06
410 411 8.840321 CATCTCCAAAATAACCGAAAGATACAT 58.160 33.333 0.00 0.00 0.00 2.29
411 412 7.827236 ACATCTCCAAAATAACCGAAAGATACA 59.173 33.333 0.00 0.00 0.00 2.29
412 413 8.209917 ACATCTCCAAAATAACCGAAAGATAC 57.790 34.615 0.00 0.00 0.00 2.24
413 414 7.497909 GGACATCTCCAAAATAACCGAAAGATA 59.502 37.037 0.00 0.00 36.42 1.98
414 415 6.318900 GGACATCTCCAAAATAACCGAAAGAT 59.681 38.462 0.00 0.00 36.42 2.40
415 416 5.646360 GGACATCTCCAAAATAACCGAAAGA 59.354 40.000 0.00 0.00 36.42 2.52
416 417 5.648092 AGGACATCTCCAAAATAACCGAAAG 59.352 40.000 0.00 0.00 39.39 2.62
417 418 5.566469 AGGACATCTCCAAAATAACCGAAA 58.434 37.500 0.00 0.00 39.39 3.46
418 419 5.174037 AGGACATCTCCAAAATAACCGAA 57.826 39.130 0.00 0.00 39.39 4.30
419 420 4.837093 AGGACATCTCCAAAATAACCGA 57.163 40.909 0.00 0.00 39.39 4.69
420 421 4.700213 ACAAGGACATCTCCAAAATAACCG 59.300 41.667 0.00 0.00 39.39 4.44
421 422 5.710099 TGACAAGGACATCTCCAAAATAACC 59.290 40.000 0.00 0.00 39.39 2.85
422 423 6.817765 TGACAAGGACATCTCCAAAATAAC 57.182 37.500 0.00 0.00 39.39 1.89
423 424 7.122650 GGATTGACAAGGACATCTCCAAAATAA 59.877 37.037 0.00 0.00 39.39 1.40
424 425 6.603201 GGATTGACAAGGACATCTCCAAAATA 59.397 38.462 0.00 0.00 39.39 1.40
425 426 5.420104 GGATTGACAAGGACATCTCCAAAAT 59.580 40.000 0.00 0.00 39.39 1.82
426 427 4.766891 GGATTGACAAGGACATCTCCAAAA 59.233 41.667 0.00 0.00 39.39 2.44
427 428 4.043310 AGGATTGACAAGGACATCTCCAAA 59.957 41.667 4.91 0.00 39.39 3.28
428 429 3.588842 AGGATTGACAAGGACATCTCCAA 59.411 43.478 4.91 0.00 39.39 3.53
429 430 3.054875 CAGGATTGACAAGGACATCTCCA 60.055 47.826 4.91 0.00 39.39 3.86
430 431 3.539604 CAGGATTGACAAGGACATCTCC 58.460 50.000 0.00 0.00 36.71 3.71
431 432 2.941720 GCAGGATTGACAAGGACATCTC 59.058 50.000 0.00 0.00 0.00 2.75
432 433 2.575279 AGCAGGATTGACAAGGACATCT 59.425 45.455 0.00 0.00 0.00 2.90
433 434 2.941720 GAGCAGGATTGACAAGGACATC 59.058 50.000 0.00 0.00 0.00 3.06
434 435 2.356535 GGAGCAGGATTGACAAGGACAT 60.357 50.000 0.00 0.00 0.00 3.06
435 436 1.003580 GGAGCAGGATTGACAAGGACA 59.996 52.381 0.00 0.00 0.00 4.02
436 437 1.280421 AGGAGCAGGATTGACAAGGAC 59.720 52.381 0.00 0.00 0.00 3.85
437 438 1.661463 AGGAGCAGGATTGACAAGGA 58.339 50.000 0.00 0.00 0.00 3.36
438 439 3.634397 TTAGGAGCAGGATTGACAAGG 57.366 47.619 0.00 0.00 0.00 3.61
439 440 4.326826 TGTTTAGGAGCAGGATTGACAAG 58.673 43.478 0.00 0.00 0.00 3.16
440 441 4.365514 TGTTTAGGAGCAGGATTGACAA 57.634 40.909 0.00 0.00 0.00 3.18
441 442 4.365514 TTGTTTAGGAGCAGGATTGACA 57.634 40.909 0.00 0.00 0.00 3.58
442 443 5.189180 AGATTGTTTAGGAGCAGGATTGAC 58.811 41.667 0.00 0.00 0.00 3.18
443 444 5.441718 AGATTGTTTAGGAGCAGGATTGA 57.558 39.130 0.00 0.00 0.00 2.57
444 445 5.884792 AGAAGATTGTTTAGGAGCAGGATTG 59.115 40.000 0.00 0.00 0.00 2.67
445 446 6.072199 AGAAGATTGTTTAGGAGCAGGATT 57.928 37.500 0.00 0.00 0.00 3.01
446 447 5.707066 AGAAGATTGTTTAGGAGCAGGAT 57.293 39.130 0.00 0.00 0.00 3.24
447 448 5.129485 CCTAGAAGATTGTTTAGGAGCAGGA 59.871 44.000 0.00 0.00 35.71 3.86
448 449 5.363939 CCTAGAAGATTGTTTAGGAGCAGG 58.636 45.833 0.00 0.00 35.71 4.85
449 450 5.363939 CCCTAGAAGATTGTTTAGGAGCAG 58.636 45.833 0.00 0.00 35.71 4.24
450 451 4.384208 GCCCTAGAAGATTGTTTAGGAGCA 60.384 45.833 0.00 0.00 35.71 4.26
451 452 4.130857 GCCCTAGAAGATTGTTTAGGAGC 58.869 47.826 0.00 0.00 35.71 4.70
452 453 5.622346 AGCCCTAGAAGATTGTTTAGGAG 57.378 43.478 0.00 0.00 35.71 3.69
453 454 5.487488 TGAAGCCCTAGAAGATTGTTTAGGA 59.513 40.000 0.00 0.00 35.71 2.94
454 455 5.745227 TGAAGCCCTAGAAGATTGTTTAGG 58.255 41.667 0.00 0.00 33.89 2.69
455 456 6.644347 TCTGAAGCCCTAGAAGATTGTTTAG 58.356 40.000 0.00 0.00 0.00 1.85
456 457 6.620877 TCTGAAGCCCTAGAAGATTGTTTA 57.379 37.500 0.00 0.00 0.00 2.01
457 458 5.505181 TCTGAAGCCCTAGAAGATTGTTT 57.495 39.130 0.00 0.00 0.00 2.83
458 459 5.505181 TTCTGAAGCCCTAGAAGATTGTT 57.495 39.130 0.00 0.00 0.00 2.83
465 466 3.133721 GCATCTCTTCTGAAGCCCTAGAA 59.866 47.826 12.54 0.00 0.00 2.10
466 467 2.697751 GCATCTCTTCTGAAGCCCTAGA 59.302 50.000 12.54 10.22 0.00 2.43
467 468 2.224257 GGCATCTCTTCTGAAGCCCTAG 60.224 54.545 12.54 5.16 36.17 3.02
468 469 1.765314 GGCATCTCTTCTGAAGCCCTA 59.235 52.381 12.54 0.00 36.17 3.53
469 470 0.545646 GGCATCTCTTCTGAAGCCCT 59.454 55.000 12.54 0.00 36.17 5.19
470 471 0.254178 TGGCATCTCTTCTGAAGCCC 59.746 55.000 12.54 7.89 41.33 5.19
471 472 1.377536 GTGGCATCTCTTCTGAAGCC 58.622 55.000 12.54 11.06 42.32 4.35
472 473 1.377536 GGTGGCATCTCTTCTGAAGC 58.622 55.000 12.54 1.39 0.00 3.86
473 474 1.741732 CGGGTGGCATCTCTTCTGAAG 60.742 57.143 11.18 11.18 0.00 3.02
474 475 0.250234 CGGGTGGCATCTCTTCTGAA 59.750 55.000 0.00 0.00 0.00 3.02
475 476 0.614697 TCGGGTGGCATCTCTTCTGA 60.615 55.000 0.00 0.00 0.00 3.27
476 477 0.179089 CTCGGGTGGCATCTCTTCTG 60.179 60.000 0.00 0.00 0.00 3.02
477 478 0.324738 TCTCGGGTGGCATCTCTTCT 60.325 55.000 0.00 0.00 0.00 2.85
478 479 0.179097 GTCTCGGGTGGCATCTCTTC 60.179 60.000 0.00 0.00 0.00 2.87
479 480 0.904865 TGTCTCGGGTGGCATCTCTT 60.905 55.000 0.00 0.00 0.00 2.85
480 481 0.904865 TTGTCTCGGGTGGCATCTCT 60.905 55.000 0.00 0.00 0.00 3.10
481 482 0.036388 TTTGTCTCGGGTGGCATCTC 60.036 55.000 0.00 0.00 0.00 2.75
482 483 0.620556 ATTTGTCTCGGGTGGCATCT 59.379 50.000 0.00 0.00 0.00 2.90
483 484 1.463674 AATTTGTCTCGGGTGGCATC 58.536 50.000 0.00 0.00 0.00 3.91
484 485 1.923356 AAATTTGTCTCGGGTGGCAT 58.077 45.000 0.00 0.00 0.00 4.40
485 486 1.339610 CAAAATTTGTCTCGGGTGGCA 59.660 47.619 0.00 0.00 0.00 4.92
486 487 1.336795 CCAAAATTTGTCTCGGGTGGC 60.337 52.381 4.92 0.00 0.00 5.01
487 488 1.336795 GCCAAAATTTGTCTCGGGTGG 60.337 52.381 4.92 0.00 0.00 4.61
488 489 1.613437 AGCCAAAATTTGTCTCGGGTG 59.387 47.619 4.92 0.00 0.00 4.61
489 490 1.995376 AGCCAAAATTTGTCTCGGGT 58.005 45.000 4.92 0.00 0.00 5.28
490 491 3.254657 TGTAAGCCAAAATTTGTCTCGGG 59.745 43.478 4.92 0.00 0.00 5.14
491 492 4.497473 TGTAAGCCAAAATTTGTCTCGG 57.503 40.909 4.92 0.00 0.00 4.63
492 493 6.820470 TTTTGTAAGCCAAAATTTGTCTCG 57.180 33.333 4.92 0.00 45.68 4.04
502 503 6.648725 GCAAAGGTATCATTTTGTAAGCCAAA 59.351 34.615 0.00 0.00 41.25 3.28
503 504 6.162777 GCAAAGGTATCATTTTGTAAGCCAA 58.837 36.000 0.00 0.00 36.81 4.52
504 505 5.244851 TGCAAAGGTATCATTTTGTAAGCCA 59.755 36.000 0.00 0.00 36.81 4.75
505 506 5.719173 TGCAAAGGTATCATTTTGTAAGCC 58.281 37.500 0.00 0.00 36.81 4.35
506 507 7.832503 ATTGCAAAGGTATCATTTTGTAAGC 57.167 32.000 1.71 0.00 40.45 3.09
515 516 9.289782 GGAGAAAGTATATTGCAAAGGTATCAT 57.710 33.333 1.71 0.00 0.00 2.45
516 517 8.271458 TGGAGAAAGTATATTGCAAAGGTATCA 58.729 33.333 1.71 0.00 0.00 2.15
517 518 8.677148 TGGAGAAAGTATATTGCAAAGGTATC 57.323 34.615 1.71 0.00 0.00 2.24
518 519 9.646522 AATGGAGAAAGTATATTGCAAAGGTAT 57.353 29.630 1.71 0.00 0.00 2.73
519 520 9.474313 AAATGGAGAAAGTATATTGCAAAGGTA 57.526 29.630 1.71 0.00 0.00 3.08
520 521 7.961326 AATGGAGAAAGTATATTGCAAAGGT 57.039 32.000 1.71 0.00 0.00 3.50
521 522 8.469200 TGAAATGGAGAAAGTATATTGCAAAGG 58.531 33.333 1.71 0.00 0.00 3.11
522 523 9.859427 TTGAAATGGAGAAAGTATATTGCAAAG 57.141 29.630 1.71 0.00 0.00 2.77
533 534 9.136323 AGTCAAGTATTTTGAAATGGAGAAAGT 57.864 29.630 0.00 0.00 0.00 2.66
534 535 9.971922 AAGTCAAGTATTTTGAAATGGAGAAAG 57.028 29.630 0.00 0.00 0.00 2.62
535 536 9.965824 GAAGTCAAGTATTTTGAAATGGAGAAA 57.034 29.630 0.00 0.00 0.00 2.52
536 537 8.576442 GGAAGTCAAGTATTTTGAAATGGAGAA 58.424 33.333 0.00 0.00 0.00 2.87
537 538 7.723616 TGGAAGTCAAGTATTTTGAAATGGAGA 59.276 33.333 0.00 0.00 0.00 3.71
538 539 7.885297 TGGAAGTCAAGTATTTTGAAATGGAG 58.115 34.615 0.00 0.00 0.00 3.86
539 540 7.831691 TGGAAGTCAAGTATTTTGAAATGGA 57.168 32.000 0.00 0.00 0.00 3.41
540 541 9.492973 AAATGGAAGTCAAGTATTTTGAAATGG 57.507 29.630 0.00 0.00 0.00 3.16
543 544 9.883142 AACAAATGGAAGTCAAGTATTTTGAAA 57.117 25.926 0.00 0.00 29.71 2.69
544 545 9.528018 GAACAAATGGAAGTCAAGTATTTTGAA 57.472 29.630 0.00 0.00 29.71 2.69
545 546 8.690884 TGAACAAATGGAAGTCAAGTATTTTGA 58.309 29.630 0.00 0.00 29.71 2.69
546 547 8.870160 TGAACAAATGGAAGTCAAGTATTTTG 57.130 30.769 0.00 0.00 0.00 2.44
547 548 9.883142 TTTGAACAAATGGAAGTCAAGTATTTT 57.117 25.926 0.00 0.00 0.00 1.82
548 549 9.883142 TTTTGAACAAATGGAAGTCAAGTATTT 57.117 25.926 0.82 0.00 0.00 1.40
549 550 9.883142 TTTTTGAACAAATGGAAGTCAAGTATT 57.117 25.926 0.82 0.00 0.00 1.89
551 552 9.311916 CATTTTTGAACAAATGGAAGTCAAGTA 57.688 29.630 0.82 0.00 39.53 2.24
552 553 8.040132 TCATTTTTGAACAAATGGAAGTCAAGT 58.960 29.630 6.36 0.00 42.28 3.16
553 554 8.422973 TCATTTTTGAACAAATGGAAGTCAAG 57.577 30.769 6.36 0.00 42.28 3.02
554 555 8.783833 TTCATTTTTGAACAAATGGAAGTCAA 57.216 26.923 6.36 0.00 42.28 3.18
555 556 8.828644 CATTCATTTTTGAACAAATGGAAGTCA 58.171 29.630 6.36 0.00 42.28 3.41
556 557 8.829612 ACATTCATTTTTGAACAAATGGAAGTC 58.170 29.630 6.36 0.00 42.28 3.01
557 558 8.614346 CACATTCATTTTTGAACAAATGGAAGT 58.386 29.630 6.36 0.00 42.28 3.01
558 559 8.614346 ACACATTCATTTTTGAACAAATGGAAG 58.386 29.630 6.36 0.00 42.28 3.46
559 560 8.503458 ACACATTCATTTTTGAACAAATGGAA 57.497 26.923 6.36 6.17 42.28 3.53
560 561 7.986320 AGACACATTCATTTTTGAACAAATGGA 59.014 29.630 6.36 0.00 42.28 3.41
561 562 8.145316 AGACACATTCATTTTTGAACAAATGG 57.855 30.769 6.36 0.00 42.28 3.16
617 618 9.787532 CGATACATGTCTTCCATTTGTTAAAAT 57.212 29.630 0.00 0.00 36.39 1.82
618 619 8.788806 ACGATACATGTCTTCCATTTGTTAAAA 58.211 29.630 0.00 0.00 0.00 1.52
619 620 8.233868 CACGATACATGTCTTCCATTTGTTAAA 58.766 33.333 0.00 0.00 0.00 1.52
620 621 7.148323 CCACGATACATGTCTTCCATTTGTTAA 60.148 37.037 0.00 0.00 0.00 2.01
621 622 6.315144 CCACGATACATGTCTTCCATTTGTTA 59.685 38.462 0.00 0.00 0.00 2.41
622 623 5.123820 CCACGATACATGTCTTCCATTTGTT 59.876 40.000 0.00 0.00 0.00 2.83
623 624 4.635765 CCACGATACATGTCTTCCATTTGT 59.364 41.667 0.00 0.00 0.00 2.83
624 625 4.875536 TCCACGATACATGTCTTCCATTTG 59.124 41.667 0.00 0.00 0.00 2.32
625 626 5.097742 TCCACGATACATGTCTTCCATTT 57.902 39.130 0.00 0.00 0.00 2.32
626 627 4.753516 TCCACGATACATGTCTTCCATT 57.246 40.909 0.00 0.00 0.00 3.16
627 628 4.753516 TTCCACGATACATGTCTTCCAT 57.246 40.909 0.00 0.00 0.00 3.41
628 629 4.753516 ATTCCACGATACATGTCTTCCA 57.246 40.909 0.00 0.00 0.00 3.53
629 630 4.273480 CCAATTCCACGATACATGTCTTCC 59.727 45.833 0.00 0.00 0.00 3.46
630 631 5.116180 TCCAATTCCACGATACATGTCTTC 58.884 41.667 0.00 0.00 0.00 2.87
631 632 5.097742 TCCAATTCCACGATACATGTCTT 57.902 39.130 0.00 0.00 0.00 3.01
632 633 4.443457 CCTCCAATTCCACGATACATGTCT 60.443 45.833 0.00 0.00 0.00 3.41
633 634 3.809832 CCTCCAATTCCACGATACATGTC 59.190 47.826 0.00 0.00 0.00 3.06
634 635 3.433598 CCCTCCAATTCCACGATACATGT 60.434 47.826 2.69 2.69 0.00 3.21
635 636 3.141398 CCCTCCAATTCCACGATACATG 58.859 50.000 0.00 0.00 0.00 3.21
636 637 3.045634 TCCCTCCAATTCCACGATACAT 58.954 45.455 0.00 0.00 0.00 2.29
637 638 2.434336 CTCCCTCCAATTCCACGATACA 59.566 50.000 0.00 0.00 0.00 2.29
638 639 2.434702 ACTCCCTCCAATTCCACGATAC 59.565 50.000 0.00 0.00 0.00 2.24
639 640 2.759355 ACTCCCTCCAATTCCACGATA 58.241 47.619 0.00 0.00 0.00 2.92
640 641 1.584724 ACTCCCTCCAATTCCACGAT 58.415 50.000 0.00 0.00 0.00 3.73
641 642 2.241281 TACTCCCTCCAATTCCACGA 57.759 50.000 0.00 0.00 0.00 4.35
642 643 2.838736 CATACTCCCTCCAATTCCACG 58.161 52.381 0.00 0.00 0.00 4.94
643 644 2.092429 TGCATACTCCCTCCAATTCCAC 60.092 50.000 0.00 0.00 0.00 4.02
644 645 2.204463 TGCATACTCCCTCCAATTCCA 58.796 47.619 0.00 0.00 0.00 3.53
645 646 3.073650 AGATGCATACTCCCTCCAATTCC 59.926 47.826 0.00 0.00 0.00 3.01
646 647 4.363991 AGATGCATACTCCCTCCAATTC 57.636 45.455 0.00 0.00 0.00 2.17
647 648 4.723309 GAAGATGCATACTCCCTCCAATT 58.277 43.478 0.00 0.00 0.00 2.32
648 649 3.244353 CGAAGATGCATACTCCCTCCAAT 60.244 47.826 0.00 0.00 0.00 3.16
649 650 2.103094 CGAAGATGCATACTCCCTCCAA 59.897 50.000 0.00 0.00 0.00 3.53
650 651 1.688735 CGAAGATGCATACTCCCTCCA 59.311 52.381 0.00 0.00 0.00 3.86
651 652 1.964223 TCGAAGATGCATACTCCCTCC 59.036 52.381 0.00 0.00 0.00 4.30
652 653 3.951775 ATCGAAGATGCATACTCCCTC 57.048 47.619 0.00 0.00 45.12 4.30
653 654 3.244353 CCAATCGAAGATGCATACTCCCT 60.244 47.826 0.00 0.00 45.12 4.20
654 655 3.070018 CCAATCGAAGATGCATACTCCC 58.930 50.000 0.00 0.00 45.12 4.30
655 656 2.481952 GCCAATCGAAGATGCATACTCC 59.518 50.000 0.00 0.00 45.12 3.85
656 657 3.397482 AGCCAATCGAAGATGCATACTC 58.603 45.455 0.00 0.00 45.12 2.59
657 658 3.482156 AGCCAATCGAAGATGCATACT 57.518 42.857 0.00 0.00 45.12 2.12
658 659 5.409520 TGATTAGCCAATCGAAGATGCATAC 59.590 40.000 0.00 0.00 45.12 2.39
728 733 5.719085 AGAGTTGAGATGTGAGTTAGGTGAT 59.281 40.000 0.00 0.00 0.00 3.06
734 739 8.506168 AAAACAAAGAGTTGAGATGTGAGTTA 57.494 30.769 0.00 0.00 41.19 2.24
748 753 5.292101 CGAGAGAGTGTGAAAAACAAAGAGT 59.708 40.000 0.00 0.00 41.57 3.24
754 759 1.858458 CGCGAGAGAGTGTGAAAAACA 59.142 47.619 0.00 0.00 36.04 2.83
760 765 4.760840 GCGCGCGAGAGAGTGTGA 62.761 66.667 37.18 0.00 43.55 3.58
811 824 2.048597 TCAGCCGTACGCACAAGG 60.049 61.111 10.49 0.00 41.38 3.61
834 860 0.533491 TTCGATGTGGGTCCCGTAAG 59.467 55.000 2.65 0.00 0.00 2.34
835 861 0.975135 TTTCGATGTGGGTCCCGTAA 59.025 50.000 2.65 0.00 0.00 3.18
838 864 1.014352 GAATTTCGATGTGGGTCCCG 58.986 55.000 2.65 0.00 0.00 5.14
867 893 0.764752 CCCTGATCTCCCACTACCCC 60.765 65.000 0.00 0.00 0.00 4.95
877 903 1.127343 CCTTCACCTCCCCTGATCTC 58.873 60.000 0.00 0.00 0.00 2.75
889 923 2.291540 TGAAATCATGACCCCCTTCACC 60.292 50.000 0.00 0.00 0.00 4.02
891 925 4.264307 TGAATGAAATCATGACCCCCTTCA 60.264 41.667 0.00 2.73 36.56 3.02
892 926 4.280819 TGAATGAAATCATGACCCCCTTC 58.719 43.478 0.00 0.00 36.56 3.46
893 927 4.335735 TGAATGAAATCATGACCCCCTT 57.664 40.909 0.00 0.00 36.56 3.95
894 928 4.547886 ATGAATGAAATCATGACCCCCT 57.452 40.909 0.00 0.00 38.59 4.79
953 987 2.281484 TTGGTGAAGAGCGGTGGC 60.281 61.111 0.00 0.00 40.37 5.01
1023 1063 2.365635 AGATCCACCACGGGGAGG 60.366 66.667 15.03 15.03 45.57 4.30
1155 1195 3.264897 ATGAGTTCGCGCGGCATC 61.265 61.111 31.69 23.53 0.00 3.91
1156 1196 3.566853 CATGAGTTCGCGCGGCAT 61.567 61.111 31.69 23.25 0.00 4.40
1305 1345 1.961394 AGCAGGTACTCGTTCTTGTCA 59.039 47.619 0.00 0.00 34.60 3.58
1414 1454 9.765795 AGGTTGCTAAGAACTACATATACAATC 57.234 33.333 0.00 0.00 0.00 2.67
1496 1539 1.000896 AAGGTCGATGCAAAGGGGG 60.001 57.895 0.00 0.00 0.00 5.40
1497 1540 1.032114 GGAAGGTCGATGCAAAGGGG 61.032 60.000 0.00 0.00 0.00 4.79
1509 1554 5.189145 TCAGTTTATAAGACAGGGGAAGGTC 59.811 44.000 0.00 0.00 0.00 3.85
1512 1557 7.394816 TCTTTCAGTTTATAAGACAGGGGAAG 58.605 38.462 0.00 0.00 0.00 3.46
1541 1593 3.208594 CGCATCCCTGAAGATGAATTCA 58.791 45.455 11.26 11.26 45.43 2.57
1577 1629 3.241530 AGGTCGGTGAGCTTGGCA 61.242 61.111 0.00 0.00 37.04 4.92
1611 1663 0.251354 ATGCACTCGCTCAGGATGTT 59.749 50.000 0.00 0.00 39.64 2.71
1655 1707 2.872925 CGGTCGGCGTTGTACTCG 60.873 66.667 6.85 0.40 0.00 4.18
2005 2061 4.424430 CGACGTCGGCCGCAAAAG 62.424 66.667 29.70 8.68 41.42 2.27
2118 2174 3.038280 TCTCGTAATGGGTGATGTGGAT 58.962 45.455 0.00 0.00 0.00 3.41
2149 2205 5.965486 ACTACAGAGTACCCATGGATCATA 58.035 41.667 15.22 0.00 32.65 2.15
2171 2227 3.933332 AGAATAAAAGGCGCAGTACAGAC 59.067 43.478 10.83 0.00 0.00 3.51
2172 2228 3.932710 CAGAATAAAAGGCGCAGTACAGA 59.067 43.478 10.83 0.00 0.00 3.41
2173 2229 3.684788 ACAGAATAAAAGGCGCAGTACAG 59.315 43.478 10.83 0.00 0.00 2.74
2174 2230 3.670625 ACAGAATAAAAGGCGCAGTACA 58.329 40.909 10.83 0.00 0.00 2.90
2175 2231 4.392138 AGAACAGAATAAAAGGCGCAGTAC 59.608 41.667 10.83 0.00 0.00 2.73
2176 2232 4.575885 AGAACAGAATAAAAGGCGCAGTA 58.424 39.130 10.83 0.00 0.00 2.74
2177 2233 3.412386 AGAACAGAATAAAAGGCGCAGT 58.588 40.909 10.83 0.00 0.00 4.40
2181 2237 6.381801 ACATTTGAGAACAGAATAAAAGGCG 58.618 36.000 0.00 0.00 0.00 5.52
2189 2245 4.391216 CGAGCTGACATTTGAGAACAGAAT 59.609 41.667 0.00 0.00 0.00 2.40
2209 2265 1.202417 ACTGTTCACACCACAGACGAG 60.202 52.381 7.06 0.00 43.90 4.18
2235 2291 6.720012 AAAATTAGCGGCAAAAATAACCTG 57.280 33.333 1.45 0.00 0.00 4.00
2344 2400 1.895707 CTGGATCCAATCGGCCAGC 60.896 63.158 17.00 0.00 41.17 4.85
2346 2402 1.526887 GACTGGATCCAATCGGCCA 59.473 57.895 17.00 0.00 0.00 5.36
2362 2418 1.883084 CGGTCAGCAATAGGCCGAC 60.883 63.158 0.00 0.00 46.93 4.79
2363 2419 2.499205 CGGTCAGCAATAGGCCGA 59.501 61.111 0.00 0.00 46.50 5.54
2364 2420 0.532862 AATCGGTCAGCAATAGGCCG 60.533 55.000 0.00 0.00 46.50 6.13
2365 2421 0.947244 CAATCGGTCAGCAATAGGCC 59.053 55.000 0.00 0.00 46.50 5.19
2366 2422 0.947244 CCAATCGGTCAGCAATAGGC 59.053 55.000 0.00 0.00 45.30 3.93
2367 2423 2.620251 TCCAATCGGTCAGCAATAGG 57.380 50.000 0.00 0.00 0.00 2.57
2368 2424 3.070018 GGATCCAATCGGTCAGCAATAG 58.930 50.000 6.95 0.00 0.00 1.73
2369 2425 2.437651 TGGATCCAATCGGTCAGCAATA 59.562 45.455 13.46 0.00 0.00 1.90
2370 2426 1.212688 TGGATCCAATCGGTCAGCAAT 59.787 47.619 13.46 0.00 0.00 3.56
2371 2427 0.617935 TGGATCCAATCGGTCAGCAA 59.382 50.000 13.46 0.00 0.00 3.91
2431 2516 4.256180 GGATCCAATCGGCCGGCT 62.256 66.667 28.56 10.71 0.00 5.52
3028 3281 5.538053 TCATTAGTTTCCAATTGCTGGTTCA 59.462 36.000 0.00 0.00 46.51 3.18
3052 3305 2.180276 CACCAGAGTAGCTAACCACCT 58.820 52.381 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.