>input_sequence_59426
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-------------------------------------------------------------------------------A
TGGCGGCCAGCAACGGCGGCGCCCTCCCCGTGGTGGATCTGGCGCCGTTCTTCGCCGTGGGGGACGCCGACGGCGAGGGG
GCGCGCACCCGGGCCACCGAGGCCGTGCGCGAGGCGTGCCAGGCCACCGGGTTCTTCCGCGCGGTGAACCACGGGATGCC
GCGCGAACTCATGGCGCGCGCGCTCGAGCTGTCGGCGGCGTTCTTCGCGCTGCCGGACGAGGAGAAGGCCAAGGTCCGGC
CCGCCGAAGGCGCCTCCGCCTCGCCGCTCCCGGTGGGGTACGCGCGGCAGCCGGCGCACTCCGCTGACAAGAACGAGTAC
CTGCTCCTCTTCAACCCCAAGCTCGGGCTCAACCACTACCCCGCCCAGCCGCCCGGATTCAGGTTAGTCCGTCCTTACTC
TGCTTCAATTGTGGATTGTATAT---GTAGTTCTTAGCAACCTCTGCTTCAATTCTGAATTGTGAGTGTGTCACAGAGAC
AGGCAGAACTCCATTTCCCCC--CCTTTGCATCGACCTTCCCCTGTCTTATAA-----ACTGAAAGA--AAATGAATTCA
TCTTCAGGGATGCGCTGGAGGAGTGCTATGCCAAGCTCACCGACCTGGGGCTGCTCATCCAGAACATCCTGAGCGAGTGC
ATGGGCCTGCCGCCGGGCTTCCTCGCCGAGTACAACGCCGACCGCGGCTTCGACTTCCTCACGGCGCTGCGCTATTTCCC
GGCGACAA---CCGACGAGAACAACGGCATCAGCGCGCACGAGGACGGCAACTGCATCACCTTCGTCCTGCAGGACGGCG
TCGGGGGCCTGGAGGTGCTCC-GGGAGGACGGCCGCTGGGTCCCCGCAGAGCCCGTGGAGGGCAGCATCGTCGTCAACGT
GGGGGACGTCCTGCAGGTGCTCAGCAACAAGAAGTTCAAGAGCGCCACGCACAGGGTGGTGAGGAGGCCCGGGGCGCACC
GCCACTCCATCGCCTTCTTCCTCAACCTCCACGGCGACAAGTGGGTCGAGCCGCTGCCGGCTTTTGCGGCCGACGTCGGC
GAACCGCCGCGGTACAGGGGGTTCCGGTACAACGAGTACATGCAGCTGCGGATGAGGAACAAGACCCACCCGCCGTCCAG
GCCCGAGGACGTCATCCACATCACCCATTACGAGATCTAG----------------------------------------
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-------------------------------------
>chr2A_1_TraesCS2A01G519900
ACTATCAGGAAGTAGTCGAAGCAAAGGACGGATCAAGAGTAGTCATGTTGAGACGTTCCCAAAAAAACTTATCACCCTTC
TCCCGATGCAGGATCTCAAAGGACGGGGTTCCGGAGGCCTGCTCTTCCGACCAACCGTGCACGCAGTCATCAGGATGGAA
TCGCCGGAAGCAGCACATTAAAAGAAATAATAGATGACGGTTAGGGTTGCATAGGGAGGGAGTGAGTCCGTTGGCCGCAC
CTGCACTGGCCAACGCCTCCGATATATGTCGTCGACTAGGGAATCGTGGCATGGTCTATTGGTCTTACACAGATGCCAAT
TGATGTATATTTATATCACTTGGTGATATATTTTATATCAGATGTAAAAAATAGACACCTATATTATCTGACGTTTTTTT
AGCTCAAATGATGTATCTTTCGGTTATTTTGGAGATGTCCTTGTCAATCCTGCTCCTAAACAATCTTCTAGGGCTTCAGA
AGAGATGCCACCCGAGACAAATTTTGGCTTACAAAATGATACCTTTGCAATATACTTTCTCCATTTCAAAATACTTGACT
TCCATTTGTTCAAAAATGAATGTGTCTATATAGTAAAATATGTCTAGATACATTTATATTTTAACAAATGGAAGACATGT
ATCGTGGAATTGGAGGGAGTATGCATCTTCGATTGGCTAATCACCCCGCTCCTTAAATATTCCGGCGA----CGGTCACA
CGCTTCCAAATTATCACCTAACTCACATCTCAACTCTTTGTTTTTCACACTCTCT--------CGCGCGCGCCGGATAGC
GACTGAGCTTCGAGCTTAGTTTGC--CTTGT-----------GCGTACGGCTGACCCCGCTTACGGGACCCACATCGAAA
TTCAGGGGAGGAGGGGTAGTGGG--------AGATCAGGGGAGGTGAAGGGGGTCATGATTTCATTCATAAAGAACTCTT
TTATTTTAACGATCGCGTCCTAACCAGCCACCG--CTCTTCACCAAGAAGCTAGCTAGAGGAC----AATCCATCACGCA
TGGCGGCCAGCAACGGCGGCGCCCTCCCCGTGGTGGATCTGGCGCCGTTCTTCGCCGTGGGGGACGCCGACGGCGAGGGG
GCGCGCACCCGGGCCACCGAGGCCGTGCGCGAGGCGTGCCAGGCCACCGGGTTCTTCCGCGCGGTGAACCACGGGATGCC
GCGCGAACTCATGGCGCGCGCGCTCGAGCTGTCGGCGGCGTTCTTCGCGCTGCCGGACGAGGAGAAGGCCAAGGTCCGGC
CCGCCGAAGGCGCCTCCGCCTCGCCGCTCCCGGTGGGGTACGCGCGGCAGCCGGCGCACTCCGCTGACAAGAACGAGTAC
CTGCTCCTCTTCAACCCCAAGCTCGGGCTCAACCACTACCCCGCCCAGCCGCCCGGATTCAGGTTAGTCCGTCCTTACTC
TGCTTCAATTGTGGATTGTATAT---GTAGTTCTTAGCAACCTCTGCTTCAATTCTGAATTGTGAGTGTGTCACAGAGAC
AGGCAGAACTCCATTTCCCCC--CCTTTGCATCGACCTTCCCCTGTCTTATAA-----ACTGAAAGA--AAATGAATTCA
TCTTCAGGGATGCGCTGGAGGAGTGCTATGCCAAGCTCACCGACCTGGGGCTGCTCATCCAGAACATCCTGAGCGAGTGC
ATGGGCCTGCCGCCGGGCTTCCTCGCCGAGTACAACGCCGACCGCGGCTTCGACTTCCTCACGGCGCTGCGCTATTTCCC
GGCGACAA---CCGACGAGAACAACGGCATCAGCGCGCACGAGGACGGCAACTGCATCACCTTCGTCCTGCAGGACGGCG
TCGGGGGCCTGGAGGTGCTCC-GGGAGGACGGCCGCTGGGTCCCCGCAGAGCCCGTGGAGGGCAGCATCGTCGTCAACGT
GGGGGACGTCCTGCAGGTGCTCAGCAACAAGAAGTTCAAGAGCGCCACGCACAGGGTGGTGAGGAGGCCCGGGGCGCACC
GCCACTCCATCGCCTTCTTCCTCAACCTCCACGGCGACAAGTGGGTCGAGCCGCTGCCGGCTTTTGCGGCCGACGTCGGC
GAACCGCCGCGGTACAGGGGGTTCCGGTACAACGAGTACATGCAGCTGCGGATGAGGAACAAGACCCACCCGCCGTCCAG
GCCCGAGGACGTCATCCACATCACCCATTACGAGATCTAGCTTCTATGATCCATGGGTACTCTGTAGTCTGTACTGCGCC
TTTTATTCTGTTCTCAAATGTCAGCTCGTCTGTGGTGTGAACAGTAGCCTCAGGTTATTTTTGCCGCTAATTTTTTTAAA
TAATACAATTTTTATATTAAATTTCAAAAATATTACGTCGTAATTATATTTTTAAAAAATATTATCCAGTTGGCCTACTG
CTGGCCGATTGGATCCAGTCGGCCTATTGCTGACCGATTGGAT-----------------------------CCAGTCGG
CCTACTGCTGGCCGATAGGCCCCCAGTCAGCCCACAGCCGGCCGATTGGATCCAGTCG----------------------
-------GCCCACTGTTG-----------------------------G-----------------------------C--
---------------------------CGATTGG-----------------------------CACCCAGTCTGCTTTCT
CTAGGCCGACGGGTGCATGCACCCATCTATCTGTTGAATATGTATTTGAAAAATGTTGAAGAACTATTTGAAAAAATG-T
TGATCATGCATATAAAAATGTTAATCAAGCATTT---AAA-AA-AATGTTGCACAAGTATTTGAAAA-TGTTGAACAAAT
ATTTGAAAACTGTTGAATAGGTATTTGAATAATGTTGAAGAAGTATTTTTAAAAATGTTGATCATGTATATATAAAAATG
TTAATCAAGCATTTGCAACAAATGTTGAAGAAGTATTTGAAGAAAATGTTGAACAAGTATTTGAAAAAAAAAATT-AACA
AGTATTTAAAAAAATATTGATCATGTAAATAAATTTG-TGAACAATTATTTGTAAAAATG-TTGATCATATATATAAAAA
TGTTGAACAAGTATTTGAAAAAAT-TTGAACAAGTATTTAATTCTTTTT-GAACAAGTATTA-GAAAAATAATATAGAAA
G--AAAATAAAAAAA--------GAATGAAATAATAGAGAAGACCGGCTCAGTCACCTTTAGTTGGTCGCGATCCCTTTT
TGAACCAGCAATTGGAAACTAATGAGGTGGTTAGCTACTCTGGTGATTGCCATGGAGACCAGGCATCGATCCCCAACGCA
GCTAATAACTACCCCACCAGCTTCCAGATGTTAATTT
>chr2B_660
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-------------------TATGCATCTTCGATTGGCTAATCACCCCGCTCCTTAAATATTCCTGCGACGGTCGGTCACA
CGCTTCCAAATTCTCACCAAACTCACATTTCAGCTCTTCGTTTTCCTCTCTCT----------------CGCCGGATAGC
GACAGAGCTTTGACCTCAGCTTAG--TTTGTTTTTTTGTTCTGCGAACGGACGGCC----------GACCCACATCAAAA
TTCAGGGGAGGATGGGTAGTGGCCTACTGGGAGACCAGGGGCAG----GGGGGTGATGATTTCATTCATAAAGAGCTCTT
T-ATTCTAACGATCGCGTCTTGACCATCCACCATACTCTTCACCAAGAAGCTACCTAGAGGAC----AATGCATCGAGCA
TGGCGGCCAGCAACGGCGGCGCGCTCCCCGTGGTGGATCTGGCGCCCTTCTTCGCCGGGGAAGGCTCTGAGGACACGGGC
GGGCGCGCCCGGGCCACCGAGGCCATGCGCGAGGCGTGCCAGGCCACCGGGTTCTTCCGCGCGGTGAACCACGGCGTGCC
GCGCGAGCTCATGGCGCGCGCGCTCGACCTGTCGGCGGCGTTCTTCGCGCTCCCGGATGAGGAGAAGGCCAAGGTGCGGC
CCGCCGAGGGCGCCTCCGCGGCGCCGCTCCCGGTGGGGTACGCGCGGCAGCCCGCGCACTCCGCGGACAAGAACGAGTAC
CTGCTCCTCTTCAACCCCAAGCTCGGGCTCAACCACTACCCCGCCGAACCGGCCGGATTCAGGTTATTTCTTTCTT----
-----CATTTCTGAACCGGCC--GGAGTAGTTCTTAGCAACCTCTGCTTCAATTCTGAACTGTGAGTGTGGCAGAGAAA-
AGACAGAACCCCATTTTTTTTTTCCTTTGCATCAACTTTCCCCTGTCTTATAATATAAACTGAAAGA--AAGAAAATTCA
TCTTCAGGGATGCGCTGGTGGAGTGCTAGGCCAAGCTCACCGAGCTGGGGCTCCTCATCCAGGACATCCTGAACGAGTGC
ATGGGCCTGCCGCCGGGCTTCCTCTCAGAGTACGACGCCGACCGCAGCTTCGACTTCCTCACCGCGCTTCGCTACTTCCC
GGCGACAA---CCGACGAGAACAACGGCATCAGCGCGCACGAGGACGGCAACTGCATCACCTTCGTCCTGCAGGACGGCA
TCGGGGGCCTGGAGGTGCT-C-GGGAAGACGGCAGCTGGGTCCCCGCAGAGCCCGTGGAGGGCAGCATCGTCGTCAACGT
GGGCGACGTCCTGCTGGTGCTCAGCAACAAGAAGTTCAAGAGCGCCACGCACAGGGTGGTAAGGAGGCCGGGGGCGCACC
GCCACTCCATCGCCTTCTTCCTCAACCTCCACGGCGACAAGTGGGTCGAGCCGCTGCCGGAGTTCGCGGGCGACTCCGGC
GAGCCGCCGCGGTACAGGGGGTTCCGATACAACGAGTACATGCAGCTGCGGATGAGGAACAAGACCCACCCGCCGGCCAG
GCCCGAGGACGTCGTCCACATCACCCATTACGAGATCTAG----------------------------------------
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-------------------------------------
>chr2B_668
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---------------------------TTCGATTGGCTAATCATCCCATTCCTTTAATATTCCTGCAAT----GGTCGCA
CCCTTCCAAATTGTCACCAAACCCACAGCTCAGCTCTTCGTCTCACTCTCTCTCTCTCTCGCACGCGCGCGCCGGATAGC
GACAGAGCTTCGAGCCTAGTTTTTTTCTTCT-----------GCGTACGGCCGGCCCCGGGTAGGGGACCCACGTCGAGA
TTCAGGGGAGGATGGGTAGTGG---------AGATCAGGGGAAG----GGAGTGAGGATTTTCATTCATAAAGAGCTCTT
TTATTCTCACGATCGCGTCCAAATTCTCCACCGCTCTCTTCATCGAGAAGCTAGAGAACAATCCAAGAATCCATCACACA
TGGCGGCCAGCAACGGCGGCGCGCTCACCTTGGTGGATCTGGCGCCGTTCTTCGCCGTGGGAGACGCCGACGACGCGGGC
GCGCGCGCCCGCGCCACCGAGGCCGTGCGCGAGGCGTGCCAGGCCACCGGGTTCTTCCGCGCGGTGAACCACGCCGTGCC
GCGGGAGCTCATGGCGCGCGCGCTCGACCTGTCGGCGGCGTTCTTCGCGCTCCCGGACGAGGAGAAGGCCAAGGTGCGGC
CCGCCGAGGGCGCCTCCGCCTCGCCGCTCCCGGTGGGGTACGCGCGGCAGCCGGCGCACTCCGCCGACAAGAACGAGTAC
CTCCTCCTCTTCAACCCCAAGCTCGGGCTCAACCACTACCCCGCCCAGCCGGCCGGATTCAGGTTACTT-----------
---------------------------------------A-CTCTGCTTCAGTTCTGAATTGTGAGTGTGCCACAGAGAC
AGGCAGAACTCCATTTTTTTCC-CCTTCGCATCAACTTTCCCCTGTCTTATAA-ATTGTGCATCAGTTCTG--AAATTCA
TCTTCAGGGATGCGCTGGAGGAGTGCTACGCCAAGCTCACCGAGCTGGGGCTGCTCATCCAGGACATCCTGAACGAGTGC
ATGGGCCTGCCGCCGGGCTTCCTCGCGGGGTACAACGCCGACCGCGGCTTCGACTTCCTCACCGCGCTTCGCTACTTCCC
GGCGACAA---CCGACGAGAACAACGGCATCAGCGCGCACGAGGACGGCAACTGCATCACCTTCGTCCTGCAGGACGGCG
TCGGGGGCCTGGAGGTGCT-CGGGGAAGACGGCAGCTGGGTCCCCGCAGAGCCCGTGGAGGGCAGCATCGTCGTCAACGT
GGGCGATGTTTTGCAGGTGCTCAGCAACAAGAAGTTCAAGAGCGCCACGCACAGGGTGGTGAGGAGGCCGGGGGCGCACC
GCCACTCCATCGCCTTCTTCCTCAACCTCCACGGCGACAAGTGGGTCGAGCCGCTGCCGGAGTTCGCGGGCGACGCCGGC
GAGCCGCCGCGGTACAGGGGGTTCCGATACAACGAGTACATGCAGCTGAGGATGAGGAACAAGACCCACCCGCCGTCCAG
GCCCGAGGACGTCGTCCACATCACCCATTACGAGATCTAGCTTCCATGGTCCATTGGTACTCTGTA-------CTGTGCC
TTTTTTTCTGTTCTCAAATTTCAGTTCGTCTGTGGTGTGAACAGTAGCCTGGGGTTATTTTTGC----------------
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>chr2D_961
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-----------------------------------CTCTTCACCGAGAAGCT----AGAGAAC----AATCCATCACGCA
TGGCGGCCAGCAACGGCGGCGCGCTCCCCGTGGTGGATCTGGCGCCGTTCTTTGCCGTGGGAGACGCCGACGACGCGGGC
GCGCGCGCCCGCGCCACCGAGGCCGTGCGCGAGGCGTGCCAGGCCACCGGGTTCTTCCGCGCGGTGAACCACGGCGTGCC
GCACGAGCTCATGGCGCGCGCGCTCGATCTGTCGGCGGCGTTCTTCGCGCTGCCGGACGAGGAGAAGGCCAAGGTGCGGC
CCGCCGAGGGCGCCTCCGCCTCGCCGCTCCCGGTGGGGTACGCGCGGCAGCCCGCCCACTCCGCCGACAAGAACGAGTAC
CTGCTCCTCTTCAACCCCAAGCTCGGGCTCAACCACTACCCCGCCGAGCCTGCCGGATTCAGGTTACTTCTTTCTTGCTC
TGCTTCAATTCTGAATTCTGATTGTACTAGTTCTTAGCAACCTCTGCTTCAATGCTGAATTGTGAGTGCGTCACAGAGAC
AGACAGAACTCCAA-TTTTTCC-CCTTTGCATCAACTTTCCCCTGTCTTATCATATAAACTTAAAGAAGAAGAAAAATCA
TCTTCAGGGATGCGCTGGAGGAGTGCTACGCCAAGCTCACTGACTTGGGGCTGCTCATCCAGGACATCCTGAGCGAGTGC
ATGGGCCTGCCGCCGGGCTTCCTCGAAGAGTACAACGCCGACCGCGGCTTCGACTTCCTCACCGCGCTTCGCTACTTCCC
GGCGACATCCTCCGACGAGAACAACGGCATCAGCGCGCACGAGGACGGCAACTGCATCACCTTCGTCCTGCAGGACGGCG
TCGGGGGCCTGGAGGTGCT-CGGGGAGGACGGCCGCTGGGTCCCCGCAGAGCCCGTGGAGGGTAGCATCGTCGTCAACGT
GGGGGACGTCCTGCAGGTGCTGAGCAACAAGAAGTTCAAGAGCGCCACGCACAGGGTGGTGAGGAGGCCGGGGGCACACC
GCCACTCCATCGCCTTCTTCCTCAACCTCCACGGCGACAAGTGGGTCGAGCCGCTGCCGGAGTTCGCGGCCCACGCCGGC
GAGCCGCCGCGGTACAGGGGGTTCCGGTACAACGAGTACATGCAGCTGCGGATGAGGAACAAGACCCACCCGCCGTCAAG
GCCCGAGGATGTCGTCCACATCACCCATTACGACATCTAGCTTCCATGATCCATGGGTACGCTGTA-------CGGTGCC
TTTTTTTCTGTTCTCAAATTTCAGTTCGTCTGTGGCGTGAACAGCAGCCTGGGGTTATTTTTGCC---------------
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>chr2B_1000
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------------------------------------------------------------------------------CA
TGGCAGCCAGCAACGGCGGCGCGCTCCCCGTGGTGGATCTGGCACCGTTCTTCGCCAGGGACGGCGCCGACGACGCGGGC
GCGCGCGCCCGGGCCACCGAGGCCGTGCGCGAGGCGTGCCAGGCCACCGGGTTCTTCCGCGCGGTGAACCACGGCGTGCC
GCGGGAGCTCATGGCGCGCGTGCTCGAGCTGTCGGCGGCGTTCTTCGCGCTGCCGGACGAGGAGAAGGCCAAGGTGCGGC
CCGCCGAGGGCGCCTCCGCCGCGCCGCTCCCGGTGGGGTACGCGCGGC-------GCACTCCGACGACAAGAACGAGTAC
CTGCTCCTCTTCAACCCCAACCTCGGGCTCAACCACTACCCCGCCCAGCCGACCGGATTCAGGTTAGTCCGTCCTTACTC
TGCTTCAGTTGTGAATTCTGATTGTACTAGTGCCTAGCAA-CTCTGTTTCAGTTCTGATTTGTGAGTGTGTCACAGAGAC
AGACAGAACTCCATTTTTTTC--CCTTTGCATCAACTTTCCCCTGGCATATAA-ATAAACTGAAAGA--AAAAGAATTCA
TCTTCAGAGATGCGCTGGAGGAGTGCTACGCGAAGCTCGCCGAGCTGGGGCTGCTCGTCCAGGACATCCTGAGCGAGTGC
ATGGGCCTGCCACGAGGCTTCCTCGCTGAGTACAACGCCGACCGCGGCTTCGACTTCCTCACCGCGCTTCGCTACTTCCC
GGCGACATCCTCCGACGAGAACAACGGCATCAGCGCGCACGAGGACGGCAACTGCATCACCTTCGTCCTGCAGGACGGCG
TCGGGGGGCTGGAGGTGCT-CGGGGCAGACGGCCGCTGGGTCCCCGCGGAGCCCGTGGAGGGCAGCATCGTGGTCAACGT
GGGCGACGTCCTGCAGGTGCTGAGCAACAAGAAGTTCAAGAGCGCCACGCATAGGGTGGTGAGAAGGCCGGGGGCGCACC
GCCACTCGATCGCCTTCTTCCTCAACCTCCACGGCGACAAGTGGGTCGAGCCGCTGCCGGAGTTCGCGGGCCACGCCAGC
GAGCCGCCGCGGTACAGAGGGTTCCGATACAACGAGTACATGCAGCTGCGGATGAGGAACAAGACCCACCCGCCGGCCAG
GCCCGAGGACGTCGTCCACATCACCCATTACGAGATCTAGC---------------------------------------
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>chr2B_1000
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------------------------------------------------------------------------------CA
TGGCGGCCAGCAACGGCGGCGCTCTCCCGGTGGTGGACCTGGCGCCGTTCTTCGCCGGGGACGGTGCCCACGACAACAGC
GCGCGCGCCCGGGCCATCGAGGCCGTGCGCCAGGCGGGCCAAGCGACCGGGTTCTTCCGCGCGGTGAACCACGGCGTGCC
GCGCGAGCTCATGGCACGCGCTTTGGAGCTATCGGCAGCGTTCTTCGCGCTCCCGGACGAGGAGAAGGCCAAGGTGCGGC
CCGCCGAGG---CCTCCAACGCGCCGCTACCGGTGGGGTACGCGCGGCAGCCGGCGCACTCCGCCGACAAGAACGAGTAC
CTCCTCCTCTTCAACCCCAAGCTCGGGCTCAACCACTACCCCGCCGAACCGGCCGGACTCAGGGGC--------------
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-----------GCGCTGGAGGAGTGCTTCGCCAAGCTCGCCGACCTGGGGCTGCTCATCCAGGACATCCTGAACGAGTGC
ATGGGCCTGCCACGAGGCTTCCTTGCAGAGTACAACGCCGACCGTGACTTCGACTTTCTCACGGCGCTGCGATACTTCCC
GGCGACAG---CCGACGAGAACAACGGCAGCAGCGCGCACGAGGACGCCAACTGCATCACCTTCGTACTGCAGGACGACG
TCGGGGGCCTGGAGGTGCT-CGGCGTCGACGGCCGCTGGGTCCCCGCGGAACCCGTGGATGGCACCATCGTCGTCAATGT
GGGCGACGTTCTGCAGGTGCTGAGCAACAAGAAGTTCAAGAGCGCCACGCACAGGGTGGTGAGGAGGCCGGAGGCGCACC
GCCACTCCATCGTCTTTTTCCTCAACCTCCACGGCGACAAGTGGGTCGAGCCGCTGCCGGAGTTCGCGGCAGACGTCGGC
GAGCCGCCGCGGTACAGAGGATTCCGATACAACGAGTACATGCAGCTGCGCATGAGGAACAAGTCCCACCCGCCGTCCAG
GCCTGAGGACGTCGTCCACATCACCCATTACGAGATCTAGCT--------------------------------------
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>chr3B_2242
ATTTTTGGGCTAAT------------------------------------------------------------------
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----------------------------------------------------------------------TTTTTTAAAA
TAATACATTTTTTATATTAAATTTCAGAAATATTACGCCGTAATTATATTTTTTTAAAATATTACCCAGTTGGCCTAC--
---------------------------TGCTGACCGATTGGAT-----------------------------CCAGTCGG
CCTACTGCTGGCC-ATTGGCCCCCAGTCAGCCCACTGGCGGCCGATTGGATCCAGTCGACCCACTGCTGGCCGATTGGCC
TCAGTCAGCCCACAACTG-----------------------------G-----------------------------C--
---------------------------CGATTGG-----------------------------CACCCAGTCTGCTTCCT
CTAGGCCGACAGGTGCATGCACCCATCTATCTGTTGAGTAGGTATTTGAAAAATGTTGAAGAAGTATTTGAAAAAATG-T
TGATCATGCATATAAATATGTTAATCAAGCATTT---AAA-AATAAAGTTGCACAAGTATTTGAAAA-TGTTGAACAAAT
ATTTGAAAACTGTTGAATAGGTATTTGAAAAATGTTGAAGAAGTATTTTAAAAAATGTTGATCATGTATATATAAAAATG
TTAATCAAGCATTTGCAACAAATGTTGAAGAAGTATTTGAAAAAAATGTTGAACGGGTATTTGAAAAAAAATGTTGAACA
AGTATTTAAAAAAATATTGATCATGTAAATAAAAATGTTGAACAAGTATTTGTAAAAATG-TTGATCATGTATATAAAAA
TGTTGAACAAGTATTTGAAAAAAA-TTGAAAAAGTATTT-------TTTTGAACAAGTATTTGAAAAAATAATATAGAAA
AAAAAAAG-AAAAAA--------GAATGAAATAATGGAGAAGACCGGCTCAGTCATCTCTAGTTAGTCGCGACCCCTTTT
CTAACAAGTAATTGGAAACTAATGGGGTGGTTACCTGCTCTGGTGATTGCCATGGAGACCAGGCATCGATCCCCAGCACA
GCTAATAACTACCCCACCAGCTTTCAGATGTTAA---
>chr2B_2251
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-----------------------------------------------------------------GCTATTTTTTTTAAA
TAATACATTTTTAATATTAAATTTCAGAAGTATTACGCCGTAATTATATTAA-AAAAAATATTACCCAGTTGGCCTAC--
---------------------------TGCTGACCGATTGGAT-----------------------------CCAGTCAG
CCTACTGCTGGCCGATTGGCCCCGAGTCAGCCCACTGTCGGCCGATTGGATCCAGTCG----------------------
-------GCCCACTGCTG-----------------------------G-----------------------------CCG
ATTGGCCCCAGTCAGCCCACAGCTGGTCGATTGG-----------------------------CACCCAGTCTGCTTCCT
CTAGGCCGACAGGTGCATGCACCCATCTATCTGTTGAGTAGGTATTTGAAAAATGTTGAAGAAGTATTTGAAAAAATG-T
TGATCATGCATATAAAAATGTTAATCAAGCATTTTTT--A-AA-AATGTTGCACAAGTATTTGAAAA-TGTTGAATAAAT
ATTTGAAAACTGTTGAATAGGTATTTGAAAAATGTTGAAGAAGTATTTTAAAAAATGTTGATCATGTATATATAAAAATG
TTAATCAAGCATTTGCAACAAATGTTGAAGAAGTATTTAAAAAAAATGTTGAACAGGTATTTGAAAAAAA-TGTTGAACA
AGTATTTTCAAAAATATTGATCATGTAAATAAAAATGTTGAACAAGTATTTGTAAAAATG-TTGATCATGTATATAAAAA
TGTTGAACAAGTATTTGAAAAAAA-TTGAAAAAGTATTTAATT-TTTTT-GAACAAGTATTT-GAAAAATAATATAGAAA
G--AAAAG-AAAAAA--------GAATGAAATAATGGAGAAGACCGGCTCAGTCATCTCTAGTTGGTCGCGATCCCTTTT
CTAACCAGTAATTGGAAACTAATGGGGTGGTTAGCTGCTCTGGTGATTGCCATGGAGACCAGGCATCGATCCCCAGCGCA
GCTAATAACTACCCCACCAGCTTCCAGATGTTAA---
>chr5A_2251
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-----------------------------------------------------------------GCTAATTTTTTTAAA
TAATACAATTTTTATATTAAA-TTCAGAAATATTACGCCGTAATTATATTTTTTAAAAATATTATCCAGTTGGCCTAC--
---------------------------TGCTGGCCGATTGGATCCAGTCGGCCTACTGCTGACCGATTGGATCCAGTCGG
CCTACTGCTGGCCGATAGGCCCCCAGTCAACCCACTGCCGGCCGATTGGATCCAGTCG----------------------
-------GCCCACTGCTG-----------------------------G-----------------------------C--
---------------------------CGATTGG-----------------------------CACCCAGTCTGCTTCCT
CTAGGCCGACGGGTGCATGCACCCATCTATCTGTTGAATAGGTATTTGAAAAATGTTGAAGAAGTATTTGAAAAAATG-T
TGATCATGCATATAAAAATGTTAATCAAGCATTT---AAA-AA-AATGTTGCACAAGTATTTGAAAA-TGTTGAACAAAT
ATTTGAAAACTGTTGAATAGGTATTTGAATAATGTTGAAGAAGTATTTTTAAAAATGTTGATCATGTATATATAAAAATG
TTAATCAAGCATTTGCAACAAATGTTGAAGAAGTATCTGAAGAAAATGTTGAACAAGTATTTGAAAAAAAAAATTGAACA
AGTATTTAAAAAAATATTGATCATGTAAATAAAAATGTTGAACAATTATTTGTAAAAATG-TTGATCATGTATATATAAA
TGTTGAACAAGTATTTGAAAAAAT-TTGAACAAGTATTTAATT-TTTTT-GAACAAGTATTA-GAAAAATAATATAGAAA
G--AAAAGAAAAAAA--------GAATGAAATAATAGAGAAGACCGGCTCAGTCACCTTTAGTTGGTCGCGATCCCTTTT
CGAACCAGCAATTGGAAACTAATGGGGTAGTTAGCTACTCTGGTGATTGCCATGGAGACCAGGCATCGATCCCCAACGCA
GCTAATAACTACCCCACCAGCTTCCAGATGTTAA---
>chr3B_2251
--------GCTAAT------------------------------------------------------------------
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----------------------------------------------------------------------TTTTTTAAAA
TAATACATTTTTTATATTAAATTTCAGAAATATTACGCCGTAATTATATTTTTTTTAAAATATT----------------
------------ACCCA-----------------------------GTTGGCCTACTGCTGACCGATTGGATCCAGTCGG
CCTACTGCTGGCCGATTGGCCCCCAGTCAGCCCACTGTCGGCCGATTGGATCCAGTCG----------------------
-------GCCCACTGCTG-----------------------------GCCGATTGGCCCCAGACAGCCCACAGTTGAC--
---------------------------CGATTGG-----------------------------CACCCAGTCTGCTTCCT
CTAGGCCGACAGGTGCATGCACCCATCTATCTGTTGAGTAGGTATTTGAAAAATATTGAAGAAGTATTTGAAAAAATG-T
TGATCATGCATATAAAAATGTTAATCAAGCATT--AAAAA-AA-AATGTTGCACAAGTATTTGAAAA-TGTTGAACAACT
ATTCAAAAACTGTTGAATAGGTATTTGAAAAATGTTGAAGAAGTATTTTAAAAAATGTTGATCATGTATATATAAAAATG
TTAATCAAGCATTTGCAACAAATGTTGAAGAAGTATTTGAAAAAAATGTTGAACAGGTATTTGAAAAAAA-TGTTGAACA
AGTATTTAAAAAAATATTGGTCATGTAAATAAAAATGTTGAACAAGTATTTGTAAAAATG-TTGATCATGTATATAAAAA
TGTTGAACAAGTATTTGAAAAAAA-TTGAAAAAATATTT-------TTTTGAACAAGTATTTGAAAAAATAATATAGAAA
A--AAA-GAAAAAAA--------GAATGAAATAATGGAGAAGACCGGCTCAGTCATCTCTAGTTGGTCGTGATCCCTTTT
CTATCCAGTAATTGGAAACTAATGGCATGGTTAGCTGCTCTGGTGATTGCCATGGAGACCAGGCATCGATCTCCAGCGTA
GCTAATAACTACCCCACCAGCTTCCAGATGTT-----
>chr6B_2251
--------GCTAAT------------------------------------------------------------------
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----------------------------------------------------------------------TTTTTTTTAA
TAATACA-TTTTTATATTAAATTTCAGAAATATTACGCCATAATTATTA-TTATTTTAAATATT----------------
------------ACCCA-----------------------------ATCGGCCTACTGCTGACTGATTGGATCCAGTCGG
CCTACTGTTGGCCGATTGGCCCCCAGTCGGCCCACTAACGGCCGATTGAATCCAGTCG----------------------
-------GCCCACCGCTG-----------------------------G-----------------------------C--
---------------------------CGATTGGCCCCAGTCGGCCCACTACTGGCCGAATGGCATCCAATCTACTTTCT
ATAGGCCGATAGGTGCATGCACCCATCTATCTGTTGAATAGCTATTTGAAAAATGTTGAAGAAGTATTTGA-AAAAAATT
TGATCATGCATATAAAAATGTTAGTTAAGCATTTGAAAAA-AA-AATGTTGCACAAGTATTTGAAAAATGTTGAACAAAT
ATTTGAAAACTGTTGAATAGGTATTTGAAAACTGTTGAAGAAGTATTTTAAAAAATGTTGATCATGTATATATAAAAATG
TTGATCAAGCATTTGCAACAAATGTTGAAGAAGTATTTGAAAAAAATATTGAACAAGTATTTGAAAAAAA-TGTTGAACA
AGTATTTCAAAAAATATTGATCATGTCCATAAAAATGTTGAACAAGTATTTGTAAAAAAACATTATCATGTATATAAAAA
TGTTGAACAAGTATTTGAAAAAAAATTGAACAAGTATTTAAAAAAA-TTTGAACAAGTATTTGAAAAAATAATATAGAAA
A--AAA--------A--------GAAAGAAATAATGGAGAAGACCGGCTCAGTCGCCTCTAGCTGGTCGCAGTCCCTTTT
CTAACCAGTAACTGGAAACTAATGGGGTGGTTAGTTGCACTGGTGATTGCCATGGAGACCAGGCATCGATCCCCAACGCA
GCTAATAACTACTCCACCAGCTTCCAGATGTTAA---
>chr5B_2261
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---------------------------------------------------------------------------TTAAA
TAATACATTTTTTATATTAAATTTTAGAAATATTATGCCGTAATTATATTTTTTAAAAAATATT----------------
------------ATCCA-----------------------------GTTGGCCTACTACTGGCCGATTGGATCCAGTCGG
CCTACTGCTGGCCAACTGGCCCCTAGTCAGCCCACTGTCGGCCGATTGGATCCAGTCG----------------------
-------GCCCACTGTTG-----------------------------G-----------------------------C--
---------------------------CGATTGGCCCCAGTCGACCCGCTGTTGGCCGATTTGCACCCAGTCTGCTTCCT
CTAGGCCGACAGGTGCATGCACCCATCTATCTGTTGAATAGGTATTTGAAAAATGTTGAAGAAGTATTTGA-AAAATG-T
TGATCATGCATATAAAAATGTTAATCAAGCATTT---AAAAAA-AATGTTGCACAAGTATTTTAAAA-TGTTGAACAAAT
ATTTGAAAACCGTTGAATAGGTATTTGAGAAATGTTGAAGAAGTATTTTATAAAATGTTGATCATGTATATATAAAAATG
T-AATCGAGCATTTGCAGCAAATGTTGAAGAAGTATTTGAAAAAAATGTTGAACAAGTATTTGAAAAAAA-TGTTGAACA
AGTATTTTAAAAAATATTGATCATGTAATTAAAAATGTTGAACAAGTATTTATAAAAATG-TTAATCATGTATATAAAAA
TGTTGAACAAGTATTTGAAAAAAT-TTGAACAAGTATTTAATT-TTTTTTGCACAAGTATTTGAAAAAATAATATAGAAA
G--AAA--------ATAAAAAAAGAATCAAATAATGGAGTAGACCGGCTCAGTCACCTCTAGTTGGTCGCGATCCCTTTT
CTAACCCGTAATTGGAAACTAATGGGGTGGTTAGCTGCTCTGGTGATTGCCATGGAGACCAGGCATCGATCCTGAGCGCA
GCTAATAACTACCCCACCAGCTTCCAGATGTTAA---
>chr7B_2329
ATCCA---------------------------------------------------------------------------
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---------------------------------------------------------------------------GTCGG
CCTACTGCTGGCCGATTGGCCCCCAGTCGGCCCACTGCCAGCCGATTGGATCCAGTCG----------------------
-------GCCCACTGTTGGCCAATTGACCCTAGTCGGCGCACTACTGG-----------------------------C--
---------------------------CAATTGGCCCCAGTCGGCCCACTACTGGCCGAATGGCACCCAATCTACTTTCT
ATAGGCCGAAAGGTGCATGCACCCATCTATATGTTGAATAGGTATATGAAAAATGTTGAAGAAGTATTTGA-AAAAAATT
TGATCATGCATATAAAAATGTTAGTTAAGCATTTGAAAAAAA--AATGTTGCACAAGTATTTGAAAAATGTTGAACAAAT
ATTTGAAAACTGTTGAATAGGTATTTGAAAAATGTTGAAGAAGTATTTTAAAAAATGTTGATCATGTATATATAAAAATG
TTAATCAAGCATTTGCAACAAATGTTGAAGAAGTATTTGAAAAAA-TATTGAACAAGTATTTGAAAAAAA-TGGTGAACA
AGTATTTCAAAAAATATTGAT--TGTAAATAAAAATGTTGAACAAGTATTTGTAAAAAAA-ATTATCATCTATATAAAAA
TGTTGAACAAGTATTTGAAAAAAA-TTGAACAATTATTTAAAAAAATTT-GAACAAGTATTT-GAAAAAATAATAT----
--------------AGAAAAAAAGAAAAAAATAATGGAGAAGACCGGATCAGTCGCCTCTAGTTGGCCGCGGTCCCTTTT
CTAACCAGTAACTGGAAACTAATGGGGTGGTTAGCTGCACTGGTGATTGCCATGGAGACCAGGCATCGATACCCAACGCA
GCTAATAACTACCCCACCAGCTTCCAGATGTTAA---
>chr2A_2331
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-----------------------------------------------------------------CCAGTCAGCCCACTA
CCGGCCGATTGGATCCA-----------------------------GTTGGCCTATTGCTGGCTGATTGGATCCAGTCGG
CCTACTGCTGGCCGATAGGCCCCCAATCAGCCCACTGCCGGCCGATTGGATCCAGTCG----------------------
-------GCCCACTGCTG-----------------------------G-----------------------------C--
---------------------------CGATTGA-----------------------------CACCCAGTCTGCTTCCT
CTAGACCGACAGGTGCATGCACCCATCTATCTGTTGAATAGGTATTTGAAAAATGTTGAAGAAGTATTTGAAAAAATA-T
TGATCATGCATATAAAAATGTTAATCAAGCATTT---AAAAA--AATGTTGCACAAGTATTTGAAAA-TTTTCAACAAAT
ATCTGAAAACTGTTGAATAGGTATTTGAATAATGTTGAAGAAGTATTTTAAAAAATGTTGATCATGTATATATAAAAATG
TTAATCAAGCATTTGCAACAAATGTTGAAAAAGTATTTGAAAAAAATGTTGAACAAGTATTTGAAAAAAA-TATTGAACA
AGTATTTTAAAAAATATTGATCATGTAAATAAAAATGTTGAACAATTATTTGTAAAAATG-TTGATCATGTATATAAAAA
TGTTGAACAAGTATTTGAAAAAAT-TTGAACAAGTATTTAATT-TTTTT-GAACAAGTATTT-AAAAAATAATATAGAAA
G--AAA--------AGAAAAAAAGAATGAAATAATGGAGAAGACCGGCTCAGTCACCTTTAGTTGGTCGCGGTCCCTTTT
CGAACTAGCAATTGGAAACTAATGGGGTGGTTAGCTGCTCTGGTGATTGCCATGGAGACCAGGCATCGATCCCCAACGCA
GCTAATAACTACCCCACTGGCTTCCAGATGTTAA---
>chr4A_2358
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------------ATCCA-----------------------------GTTGGCCTACTGCTGGCCGATTGGATCCAGTCGG
CCTACTGCTGGCCGATAGGCCCCCAGTCAGCCCACTGCTGGCCGATTGGCCTCAGTCA----------------------
-------GCCCACTG-----------------------------------------------------------------
---------------------------------------------------CTGGCCGATTGGCACCCAGTCTGCTTCCT
CTAGGCCGACAGGTGCATGCATCCATCTATCTGTTGAATAGGTATTTGAAAAATGTTGAAGAAGTATTTGAAAAAATG-T
TGATCATGCATATAAAAATGTTAATCAAGCATTT---AAAAA--AATGTTGCACAAGTATTTGAAAA-TGTTGAACAAAT
ATTTGAAAACTGTTGAATAGGTATTTGAATAATGTTGAAGAAGTATTTTTAAAAATGTTGATCATGTATATAAAAAAATG
TTAATCAAGCATTTGCAACAAATGTTGAAGAAGTATTTGAAGAAAATGTTGAACAAGTATTTGAAAAAAA--ATTGAACA
AGTATTTTAAAAAATATTGATCACGTAAATAAAAATGTTGAACAATTATTTGTAAAAATG-TTGATCATGTATATAAAAA
TGTTGAACAAGTATTTGAAATAAA-TTAAACAAGTATTTAATT-TTTTT-GAACAAGTATTTGAAAAAATAATATAGAAA
G--AAA--------AGAAAAAAAGAATGAAATAATGGAGAAGACCGGCTCAGTCACCTTTAGTTGGTCGTGATCCCTTTT
CGAACCAGCAGTTGGAAACTAATGGGGTGGTTAGCTGCTCTGGTGATTGCCATGGACACCAGGCATCGATCCCCAACGCA
GCTAATAACTATCCCACTAGCTTCTAGATGTTAA---
>SNPs
-S-S-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS--------------------------------------------S----------------
------------S-----S-------------S-----S-----S-S-S-------------------------------
---S------------------SS---------------------------S-S-----SS--S----------------
------------S---------S-------------------S-SSSS------S-------------------S-----
-----S--------------------S-----------------------------------------------------
----------------------S--------------------------------------S----------S------S
------S-------------------------------------------------------------------SS----
------S--------------------------------------------------------------------S----
-------S--------------------------------------------------------S---------------
---------------------------------------------------S----------------------------
-------------S-----SSS----------------------------------------------------------
----------------SSSS-------------S--S-----------------------------------S-------
----------------------------S---------------------------------S-----------------
--------------------------S-----------------------------------------------S-----
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
---------------------------------------------------------------------S----------
------------------------------------------------------------SS--S---------------
--S-----------------------------------------------------------------------------
-------------S------------------------------S---------------------SSSSSSS---S---
----S--------------S----S-------------------------SS----------------------------
--------------------------S----------S-----------------------------------------S
-S---------------SSSSSSSSSS-----------------------------------------------------
-----------------------------------S--------------------------------------------
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----------------------------------------S----------------------S----------------
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---------------------------------SS----------------------------------S----------
-------------------------------------------S------------------------------------
-------S------------------------------------------------------------------------
S-----------------------S-------------------------------------------------------
----------------------------------SSS
>forward_289
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-----------------------------CGTCGACTAGGGAATCGTGG-------------------------------
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>reverse_1663
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--------------------------------------------------------------AACATCCTGAGCGAGTGC
AT------------------------------------------------------------------------------
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>forward_501
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-GAGATGCCACCCGAGACAAA-----------------------------------------------------------
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>reverse_2420
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-------------------CGGCCTATTGCTGACCGATT-----------------------------------------
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-------------------------------------
