Multiple sequence alignment - TraesCS2A01G516000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G516000 chr2A 100.000 2680 0 0 1 2680 739878902 739881581 0.000000e+00 4950.0
1 TraesCS2A01G516000 chr2A 82.249 169 24 2 1980 2147 739713804 739713641 1.000000e-29 141.0
2 TraesCS2A01G516000 chr2A 100.000 46 0 0 2238 2283 739881070 739881115 4.750000e-13 86.1
3 TraesCS2A01G516000 chr2A 100.000 46 0 0 2169 2214 739881139 739881184 4.750000e-13 86.1
4 TraesCS2A01G516000 chr2B 87.869 1253 135 9 1 1244 741746857 741745613 0.000000e+00 1456.0
5 TraesCS2A01G516000 chr2B 85.550 955 91 18 1239 2148 741745558 741744606 0.000000e+00 955.0
6 TraesCS2A01G516000 chr2B 84.706 170 14 7 2183 2341 741744124 741743956 2.760000e-35 159.0
7 TraesCS2A01G516000 chr2B 86.466 133 12 4 2497 2623 741743474 741743342 1.000000e-29 141.0
8 TraesCS2A01G516000 chr2B 88.608 79 6 3 2172 2247 741744066 741743988 2.840000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G516000 chr2A 739878902 739881581 2679 False 1707.4 4950 100.0000 1 2680 3 chr2A.!!$F1 2679
1 TraesCS2A01G516000 chr2B 741743342 741746857 3515 True 560.9 1456 86.6398 1 2623 5 chr2B.!!$R1 2622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
580 587 0.110328 CACGTCTACGACAACTCGCT 60.11 55.0 9.86 0.0 44.33 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2474 3068 0.034198 TCGGTCATGGTTTTCAGCGA 59.966 50.0 0.62 0.62 36.49 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.519519 TAATGGGCAAACGTTCGCTG 59.480 50.000 11.57 2.41 0.00 5.18
24 25 4.700365 GGGCAAACGTTCGCTGGC 62.700 66.667 11.57 13.35 35.03 4.85
31 32 4.389576 CGTTCGCTGGCAAGGCAC 62.390 66.667 0.00 0.00 0.00 5.01
43 44 3.749981 AGGCACTTCCAGCAAACG 58.250 55.556 0.00 0.00 37.29 3.60
65 66 2.557229 CCCTCACAACCATTGGATCCAA 60.557 50.000 28.92 28.92 40.47 3.53
71 72 4.221262 CACAACCATTGGATCCAAATCACT 59.779 41.667 30.28 11.52 39.55 3.41
87 88 7.670009 CAAATCACTTGGATGGCATTTAAAA 57.330 32.000 0.00 0.00 36.02 1.52
89 90 7.671495 AATCACTTGGATGGCATTTAAAAAC 57.329 32.000 0.00 0.00 36.02 2.43
90 91 5.226396 TCACTTGGATGGCATTTAAAAACG 58.774 37.500 0.00 0.00 0.00 3.60
91 92 5.010112 TCACTTGGATGGCATTTAAAAACGA 59.990 36.000 0.00 0.00 0.00 3.85
92 93 5.868801 CACTTGGATGGCATTTAAAAACGAT 59.131 36.000 0.00 0.00 0.00 3.73
93 94 6.034898 CACTTGGATGGCATTTAAAAACGATC 59.965 38.462 0.00 0.06 0.00 3.69
94 95 5.651387 TGGATGGCATTTAAAAACGATCA 57.349 34.783 0.00 1.10 0.00 2.92
95 96 5.406649 TGGATGGCATTTAAAAACGATCAC 58.593 37.500 0.00 7.29 0.00 3.06
104 105 7.062839 GCATTTAAAAACGATCACTGGCAATTA 59.937 33.333 0.00 0.00 0.00 1.40
109 110 6.515272 AAACGATCACTGGCAATTATTTCT 57.485 33.333 0.00 0.00 0.00 2.52
119 120 8.084073 CACTGGCAATTATTTCTTATACATGGG 58.916 37.037 0.00 0.00 0.00 4.00
139 140 5.960113 TGGGAATTTTTCATTCCGTACATG 58.040 37.500 7.38 0.00 46.46 3.21
150 151 1.134220 TCCGTACATGGCATTTCCCTC 60.134 52.381 0.00 0.00 0.00 4.30
155 156 4.142182 CGTACATGGCATTTCCCTCAAAAT 60.142 41.667 0.00 0.00 0.00 1.82
165 166 1.976404 TCCCTCAAAATGCATGGCAAA 59.024 42.857 0.00 0.00 43.62 3.68
172 173 6.149807 CCTCAAAATGCATGGCAAATTTAGTT 59.850 34.615 0.00 0.00 43.62 2.24
175 176 8.666573 TCAAAATGCATGGCAAATTTAGTTATG 58.333 29.630 0.00 0.00 43.62 1.90
183 184 5.873712 TGGCAAATTTAGTTATGTTGGCATG 59.126 36.000 6.83 0.00 46.08 4.06
184 185 5.294060 GGCAAATTTAGTTATGTTGGCATGG 59.706 40.000 0.00 0.00 42.49 3.66
186 187 3.773860 TTTAGTTATGTTGGCATGGCG 57.226 42.857 15.27 0.00 36.58 5.69
189 190 1.065491 AGTTATGTTGGCATGGCGAGA 60.065 47.619 15.27 12.09 36.58 4.04
192 193 2.825836 GTTGGCATGGCGAGAGGG 60.826 66.667 15.27 0.00 0.00 4.30
193 194 3.008517 TTGGCATGGCGAGAGGGA 61.009 61.111 15.27 0.00 0.00 4.20
195 196 4.899239 GGCATGGCGAGAGGGACG 62.899 72.222 2.41 0.00 0.00 4.79
236 237 4.435121 CCCAACAACGTTCGCTAGATAAAC 60.435 45.833 0.00 0.00 0.00 2.01
237 238 4.150980 CCAACAACGTTCGCTAGATAAACA 59.849 41.667 0.00 0.00 0.00 2.83
238 239 5.163893 CCAACAACGTTCGCTAGATAAACAT 60.164 40.000 0.00 0.00 0.00 2.71
265 266 9.682465 GTCCTAAATATAAGGTTCTTGGTTCTT 57.318 33.333 4.41 0.00 35.48 2.52
276 277 4.895668 TCTTGGTTCTTACATTACGGGT 57.104 40.909 0.00 0.00 0.00 5.28
304 305 5.603170 AAATTTGTATGGCCTTGGATCAG 57.397 39.130 3.32 0.00 0.00 2.90
341 342 3.676216 AAAAACATCGTCCCCCGC 58.324 55.556 0.00 0.00 36.19 6.13
344 345 0.392060 AAAACATCGTCCCCCGCTAC 60.392 55.000 0.00 0.00 36.19 3.58
349 350 4.073200 CGTCCCCCGCTACCGTTT 62.073 66.667 0.00 0.00 0.00 3.60
363 364 0.394216 CCGTTTGGAGGGATGATGCA 60.394 55.000 0.00 0.00 37.49 3.96
380 381 4.781071 GATGCATTCATCGGTTTCAGATC 58.219 43.478 0.00 0.00 39.63 2.75
383 384 3.873361 GCATTCATCGGTTTCAGATCTCA 59.127 43.478 0.00 0.00 0.00 3.27
393 394 1.191489 TCAGATCTCACCCGCAACCA 61.191 55.000 0.00 0.00 0.00 3.67
399 400 0.680921 CTCACCCGCAACCATTGGAT 60.681 55.000 10.37 0.00 0.00 3.41
401 402 1.214175 TCACCCGCAACCATTGGATAT 59.786 47.619 10.37 0.00 0.00 1.63
402 403 1.337703 CACCCGCAACCATTGGATATG 59.662 52.381 10.37 6.62 0.00 1.78
408 409 4.353737 CGCAACCATTGGATATGACTTTG 58.646 43.478 10.37 1.94 0.00 2.77
436 437 1.812571 GTTCAAGGTGCATTCATCGGT 59.187 47.619 0.00 0.00 0.00 4.69
438 439 3.342377 TCAAGGTGCATTCATCGGTTA 57.658 42.857 0.00 0.00 0.00 2.85
440 441 1.651987 AGGTGCATTCATCGGTTACG 58.348 50.000 0.00 0.00 42.74 3.18
448 449 0.748450 TCATCGGTTACGGATCCCAC 59.252 55.000 6.06 0.16 41.39 4.61
455 456 1.692519 GTTACGGATCCCACATAGCCT 59.307 52.381 6.06 0.00 0.00 4.58
457 458 1.372683 CGGATCCCACATAGCCTGG 59.627 63.158 6.06 0.00 0.00 4.45
461 462 2.124151 CCCACATAGCCTGGGTGC 60.124 66.667 9.02 0.00 43.32 5.01
462 463 2.124151 CCACATAGCCTGGGTGCC 60.124 66.667 9.02 0.00 0.00 5.01
468 469 2.276309 ATAGCCTGGGTGCCTCAAGC 62.276 60.000 9.02 0.00 44.14 4.01
514 515 0.770499 TTGGTGGAGTTCTCATGGCA 59.230 50.000 0.00 0.00 0.00 4.92
557 564 1.663702 GACGTTCTCGGTGTGGGTG 60.664 63.158 0.00 0.00 41.85 4.61
562 569 1.052617 TTCTCGGTGTGGGTGATTCA 58.947 50.000 0.00 0.00 0.00 2.57
570 577 1.068125 TGTGGGTGATTCACGTCTACG 60.068 52.381 10.56 0.04 46.33 3.51
578 585 2.305252 TTCACGTCTACGACAACTCG 57.695 50.000 9.86 0.00 46.06 4.18
580 587 0.110328 CACGTCTACGACAACTCGCT 60.110 55.000 9.86 0.00 44.33 4.93
600 607 6.869695 TCGCTGATGTTAGAGGTTGTTATTA 58.130 36.000 0.00 0.00 0.00 0.98
667 674 7.587629 TGTTCTTATCTGAATGAAGCAGTTTG 58.412 34.615 0.00 0.00 34.98 2.93
703 710 4.380843 AAAATGGTATGTCCTGTGGTCA 57.619 40.909 0.00 0.00 37.07 4.02
724 731 0.809636 CACGTTGATGGCCTATGCGA 60.810 55.000 3.32 0.00 38.85 5.10
730 737 2.016318 TGATGGCCTATGCGACAAAAG 58.984 47.619 3.32 0.00 38.85 2.27
738 745 6.151312 TGGCCTATGCGACAAAAGTTTTATTA 59.849 34.615 3.32 0.00 38.85 0.98
740 747 6.471198 GCCTATGCGACAAAAGTTTTATTACC 59.529 38.462 0.00 0.00 0.00 2.85
745 752 7.079475 TGCGACAAAAGTTTTATTACCTAAGC 58.921 34.615 0.00 0.00 0.00 3.09
761 768 0.742281 AAGCTAGCACCTCGCACATG 60.742 55.000 18.83 0.00 46.13 3.21
762 769 2.817423 GCTAGCACCTCGCACATGC 61.817 63.158 10.63 0.00 46.13 4.06
790 797 1.143838 TCGATGGCCGAACTCATGG 59.856 57.895 0.00 0.00 45.43 3.66
819 826 2.102420 GCAGTTTAGTTTGGCACCCTTT 59.898 45.455 0.00 0.00 0.00 3.11
821 828 4.202172 GCAGTTTAGTTTGGCACCCTTTAA 60.202 41.667 0.00 0.00 0.00 1.52
824 831 5.600898 AGTTTAGTTTGGCACCCTTTAACAT 59.399 36.000 0.00 0.00 0.00 2.71
836 843 6.650120 CACCCTTTAACATATAGTGTGGACT 58.350 40.000 0.00 0.00 41.14 3.85
850 857 2.711009 TGTGGACTGATTCCTCCTTTGT 59.289 45.455 0.00 0.00 46.10 2.83
855 862 5.012893 GGACTGATTCCTCCTTTGTTGAAT 58.987 41.667 0.00 0.00 41.95 2.57
879 886 6.442513 AGTCTACTTAATTTCCAGCATTGC 57.557 37.500 0.00 0.00 0.00 3.56
892 899 2.863401 GCATTGCATGATGCTGAGAA 57.137 45.000 19.19 4.62 46.85 2.87
926 933 7.933577 TGGACTCTACAAGATATATTTGCCTTG 59.066 37.037 9.30 9.30 41.12 3.61
928 935 9.331282 GACTCTACAAGATATATTTGCCTTGTT 57.669 33.333 17.73 5.29 44.57 2.83
936 943 7.755591 AGATATATTTGCCTTGTTATGCGATG 58.244 34.615 0.00 0.00 0.00 3.84
967 974 1.915614 GCCTGTCACATTGGCGTCTG 61.916 60.000 0.00 0.00 37.11 3.51
971 978 3.002791 CTGTCACATTGGCGTCTGTTAT 58.997 45.455 0.00 0.00 0.00 1.89
1006 1013 3.647636 TCCCAGTTTCATTTCACCCAAA 58.352 40.909 0.00 0.00 0.00 3.28
1010 1017 4.810491 CCAGTTTCATTTCACCCAAACAAG 59.190 41.667 0.00 0.00 32.20 3.16
1018 1027 3.011566 TCACCCAAACAAGCTCTTTCA 57.988 42.857 0.00 0.00 0.00 2.69
1031 1040 3.257127 AGCTCTTTCAGTAGTGGAGTGAC 59.743 47.826 0.00 0.00 37.23 3.67
1042 1051 1.072505 GGAGTGACCGAGCCCAAAA 59.927 57.895 0.00 0.00 0.00 2.44
1043 1052 0.322546 GGAGTGACCGAGCCCAAAAT 60.323 55.000 0.00 0.00 0.00 1.82
1065 1074 2.328099 GCCTCCAAGGTGTTCGCAG 61.328 63.158 0.00 0.00 37.80 5.18
1082 1091 1.284657 CAGTGCTGGCTATCGTTCTG 58.715 55.000 0.00 0.00 0.00 3.02
1084 1093 1.153369 TGCTGGCTATCGTTCTGGC 60.153 57.895 0.00 0.00 0.00 4.85
1119 1128 4.100084 TCCCTGCTGTGATGGGCG 62.100 66.667 0.00 0.00 40.69 6.13
1127 1136 2.579787 GTGATGGGCGAGACGACG 60.580 66.667 0.00 0.00 34.63 5.12
1146 1155 1.328680 CGCCATCAGATCGTCCAAAAG 59.671 52.381 0.00 0.00 0.00 2.27
1147 1156 2.359900 GCCATCAGATCGTCCAAAAGT 58.640 47.619 0.00 0.00 0.00 2.66
1151 1160 5.419542 CCATCAGATCGTCCAAAAGTCTTA 58.580 41.667 0.00 0.00 0.00 2.10
1152 1161 5.292101 CCATCAGATCGTCCAAAAGTCTTAC 59.708 44.000 0.00 0.00 0.00 2.34
1169 1178 0.608130 TACCACGTCAAGATGCTGCT 59.392 50.000 0.00 0.00 0.00 4.24
1172 1181 1.446792 ACGTCAAGATGCTGCTCCG 60.447 57.895 0.00 0.00 0.00 4.63
1193 1202 4.131596 CGGGTAAGACCTTCAAACTTGAA 58.868 43.478 4.87 4.87 44.03 2.69
1244 1253 6.713762 ATCTCATTCTACAGTTCAGAGAGG 57.286 41.667 0.00 0.00 34.55 3.69
1246 1255 4.026744 TCATTCTACAGTTCAGAGAGGGG 58.973 47.826 0.00 0.00 0.00 4.79
1247 1256 3.827817 TTCTACAGTTCAGAGAGGGGA 57.172 47.619 0.00 0.00 0.00 4.81
1249 1258 4.127918 TCTACAGTTCAGAGAGGGGAAA 57.872 45.455 0.00 0.00 0.00 3.13
1250 1259 4.090090 TCTACAGTTCAGAGAGGGGAAAG 58.910 47.826 0.00 0.00 0.00 2.62
1251 1260 2.977808 ACAGTTCAGAGAGGGGAAAGA 58.022 47.619 0.00 0.00 0.00 2.52
1253 1262 3.716872 ACAGTTCAGAGAGGGGAAAGAAA 59.283 43.478 0.00 0.00 0.00 2.52
1254 1263 4.068599 CAGTTCAGAGAGGGGAAAGAAAC 58.931 47.826 0.00 0.00 0.00 2.78
1255 1264 3.977326 AGTTCAGAGAGGGGAAAGAAACT 59.023 43.478 0.00 0.00 0.00 2.66
1268 1339 6.479990 GGGGAAAGAAACTTGTTCTTCATTTG 59.520 38.462 2.02 0.00 37.75 2.32
1272 1343 9.248291 GAAAGAAACTTGTTCTTCATTTGCATA 57.752 29.630 2.02 0.00 37.75 3.14
1282 1353 9.585099 TGTTCTTCATTTGCATATGTTATTTCC 57.415 29.630 15.51 2.43 0.00 3.13
1303 1374 3.119316 CCGTAGGCACCATAATTTGCAAA 60.119 43.478 15.44 15.44 46.14 3.68
1312 1383 7.750014 GGCACCATAATTTGCAAACTTTTTATG 59.250 33.333 23.97 23.97 40.75 1.90
1345 1416 9.155053 CTGTACGTAAAATTGTCTGAGTTTTTC 57.845 33.333 0.00 0.00 0.00 2.29
1350 1421 8.840867 CGTAAAATTGTCTGAGTTTTTCATAGC 58.159 33.333 0.00 0.00 34.68 2.97
1354 1425 5.362556 TGTCTGAGTTTTTCATAGCAAGC 57.637 39.130 0.00 0.00 34.68 4.01
1358 1429 5.063944 TCTGAGTTTTTCATAGCAAGCGATC 59.936 40.000 0.00 0.00 34.68 3.69
1372 1443 4.448732 GCAAGCGATCCATTTGTTTCTTTT 59.551 37.500 0.00 0.00 0.00 2.27
1373 1444 5.050159 GCAAGCGATCCATTTGTTTCTTTTT 60.050 36.000 0.00 0.00 0.00 1.94
1374 1445 6.357198 CAAGCGATCCATTTGTTTCTTTTTG 58.643 36.000 0.00 0.00 0.00 2.44
1378 1449 3.814625 TCCATTTGTTTCTTTTTGCCCC 58.185 40.909 0.00 0.00 0.00 5.80
1383 1454 1.066587 TTTCTTTTTGCCCCACGCG 59.933 52.632 3.53 3.53 42.08 6.01
1395 1466 0.318614 CCCACGCGTTGCTTTCATTT 60.319 50.000 10.22 0.00 0.00 2.32
1396 1467 1.068885 CCCACGCGTTGCTTTCATTTA 60.069 47.619 10.22 0.00 0.00 1.40
1405 1476 5.231147 GCGTTGCTTTCATTTACTTGAAACA 59.769 36.000 0.00 0.00 39.91 2.83
1415 1486 8.017418 TCATTTACTTGAAACAAAGGGACATT 57.983 30.769 0.00 0.00 0.00 2.71
1422 1493 2.206576 ACAAAGGGACATTCAGCCTC 57.793 50.000 0.00 0.00 0.00 4.70
1428 1499 2.026449 AGGGACATTCAGCCTCTTCTTG 60.026 50.000 0.00 0.00 0.00 3.02
1434 1508 5.352284 ACATTCAGCCTCTTCTTGTATACG 58.648 41.667 0.00 0.00 0.00 3.06
1458 1532 9.962783 ACGTAGTATGAATACTTGGTTAGATTC 57.037 33.333 8.22 0.00 41.94 2.52
1487 1565 6.311935 CGATTGCTCCAATTTTTGTTCATGAT 59.688 34.615 0.00 0.00 33.90 2.45
1500 1578 4.426416 TGTTCATGATAAATTGCAGCAGC 58.574 39.130 0.00 0.00 42.57 5.25
1567 1645 0.721718 GATGGTTCTTTCAGCGTCCG 59.278 55.000 0.00 0.00 0.00 4.79
1613 1691 4.389374 TCCTTCCTTAAAGCTGTGAAGTG 58.611 43.478 0.00 0.00 33.29 3.16
1616 1694 4.689612 TCCTTAAAGCTGTGAAGTGACT 57.310 40.909 0.00 0.00 0.00 3.41
1619 1697 4.816385 CCTTAAAGCTGTGAAGTGACTTGA 59.184 41.667 0.90 0.00 0.00 3.02
1624 1716 5.674052 AGCTGTGAAGTGACTTGATATCT 57.326 39.130 0.90 0.00 0.00 1.98
1626 1718 6.105333 AGCTGTGAAGTGACTTGATATCTTC 58.895 40.000 0.90 0.00 36.20 2.87
1649 1741 7.898014 TCCTAGAGTTTGTATCTGCTCATTA 57.102 36.000 0.00 0.00 0.00 1.90
1670 1762 7.494298 TCATTATAATGAAGCAGAGTACGCAAA 59.506 33.333 22.95 0.00 42.11 3.68
1707 1800 4.323417 CACTACTGGCTACAAATGGTTGA 58.677 43.478 0.00 0.00 38.20 3.18
1724 1817 1.117150 TGAGTTCCCCGCTATGGTAC 58.883 55.000 0.00 0.00 35.15 3.34
1743 1839 5.061179 GGTACCGTTATATGATGTTTGCCT 58.939 41.667 0.00 0.00 0.00 4.75
1750 1846 2.291209 ATGATGTTTGCCTGGACACA 57.709 45.000 0.00 0.00 0.00 3.72
1776 1872 0.175302 TGCTTGGGCAAAACAGTGTG 59.825 50.000 0.00 0.00 46.36 3.82
1779 1875 1.680735 CTTGGGCAAAACAGTGTGCTA 59.319 47.619 0.00 0.00 40.70 3.49
1781 1877 1.407258 TGGGCAAAACAGTGTGCTAAC 59.593 47.619 0.00 2.45 40.70 2.34
1785 1881 4.698304 GGGCAAAACAGTGTGCTAACTATA 59.302 41.667 0.00 0.00 40.70 1.31
1806 1902 9.283768 ACTATATCAGATAATATCAGCCTCTCG 57.716 37.037 2.84 0.00 0.00 4.04
1817 1913 0.605589 AGCCTCTCGGTTCTGAACAG 59.394 55.000 21.01 17.25 0.00 3.16
1825 1921 2.354510 TCGGTTCTGAACAGCAAACTTG 59.645 45.455 21.01 1.08 0.00 3.16
1843 1940 3.555547 ACTTGCCGAAAATTTCTTTGTGC 59.444 39.130 4.09 0.29 0.00 4.57
1853 1950 8.101510 CGAAAATTTCTTTGTGCATATTTACCG 58.898 33.333 4.09 0.00 0.00 4.02
1855 1952 9.915629 AAAATTTCTTTGTGCATATTTACCGTA 57.084 25.926 0.00 0.00 0.00 4.02
1867 1964 9.131416 TGCATATTTACCGTATTTATGTACTCG 57.869 33.333 0.00 0.00 0.00 4.18
1872 1969 7.985634 TTACCGTATTTATGTACTCGTTTCC 57.014 36.000 0.00 0.00 0.00 3.13
1873 1970 5.351458 ACCGTATTTATGTACTCGTTTCCC 58.649 41.667 0.00 0.00 0.00 3.97
1875 1972 4.746611 CGTATTTATGTACTCGTTTCCCCC 59.253 45.833 0.00 0.00 0.00 5.40
1898 1996 6.097696 CCCTCTAGGACTAGGAAAAGAAAGAG 59.902 46.154 6.52 0.00 38.24 2.85
1957 2071 4.439968 GGCTAACTGATACACCACCTAAC 58.560 47.826 0.00 0.00 0.00 2.34
2015 2129 5.591067 CCTTTTACTGTCCAACAAGGTGTAA 59.409 40.000 0.00 0.00 39.02 2.41
2026 2140 6.053005 CCAACAAGGTGTAACAAACTAGAGA 58.947 40.000 0.00 0.00 39.98 3.10
2042 2156 2.461695 AGAGAGAAAGATCGGCCAGAA 58.538 47.619 2.24 0.00 0.00 3.02
2049 2163 2.787473 AGATCGGCCAGAACAAATGA 57.213 45.000 2.24 0.00 0.00 2.57
2052 2166 1.750193 TCGGCCAGAACAAATGATCC 58.250 50.000 2.24 0.00 0.00 3.36
2055 2169 2.726821 GGCCAGAACAAATGATCCTGA 58.273 47.619 0.00 0.00 0.00 3.86
2060 2174 4.379813 CCAGAACAAATGATCCTGAAACCG 60.380 45.833 0.00 0.00 0.00 4.44
2061 2175 3.191371 AGAACAAATGATCCTGAAACCGC 59.809 43.478 0.00 0.00 0.00 5.68
2063 2177 1.818060 CAAATGATCCTGAAACCGCCA 59.182 47.619 0.00 0.00 0.00 5.69
2077 2191 0.537188 CCGCCATGTACAAGGAGTCT 59.463 55.000 21.07 0.00 0.00 3.24
2120 2234 0.544833 ATCAACCTTGCAATGGGGCA 60.545 50.000 16.21 0.00 43.19 5.36
2127 2241 1.470996 TTGCAATGGGGCAGAACACC 61.471 55.000 0.00 0.00 45.88 4.16
2134 2248 2.028484 GGCAGAACACCGTCGTGA 59.972 61.111 0.00 0.00 43.14 4.35
2141 2255 0.966920 AACACCGTCGTGATCTCCTT 59.033 50.000 0.00 0.00 43.14 3.36
2142 2256 0.243907 ACACCGTCGTGATCTCCTTG 59.756 55.000 0.00 0.00 43.14 3.61
2143 2257 0.243907 CACCGTCGTGATCTCCTTGT 59.756 55.000 0.00 0.00 43.14 3.16
2144 2258 0.243907 ACCGTCGTGATCTCCTTGTG 59.756 55.000 0.00 0.00 0.00 3.33
2145 2259 1.078759 CCGTCGTGATCTCCTTGTGC 61.079 60.000 0.00 0.00 0.00 4.57
2146 2260 0.388520 CGTCGTGATCTCCTTGTGCA 60.389 55.000 0.00 0.00 0.00 4.57
2147 2261 1.795768 GTCGTGATCTCCTTGTGCAA 58.204 50.000 0.00 0.00 0.00 4.08
2148 2262 1.461127 GTCGTGATCTCCTTGTGCAAC 59.539 52.381 0.00 0.00 37.35 4.17
2194 2763 5.293569 TCTTCAGTTCCGTTTTCTTCAGTTC 59.706 40.000 0.00 0.00 0.00 3.01
2198 2767 4.571176 AGTTCCGTTTTCTTCAGTTCTGTC 59.429 41.667 0.00 0.00 0.00 3.51
2237 2806 1.954258 GCATTGCTCTGCTTTCTCCCT 60.954 52.381 0.16 0.00 39.12 4.20
2239 2808 2.664402 TTGCTCTGCTTTCTCCCTTT 57.336 45.000 0.00 0.00 0.00 3.11
2268 2837 4.131649 TCCGTTTTCTTCAGTTCTGTCA 57.868 40.909 0.00 0.00 0.00 3.58
2269 2838 4.119862 TCCGTTTTCTTCAGTTCTGTCAG 58.880 43.478 0.00 0.00 0.00 3.51
2283 2863 2.141517 CTGTCAGGTTCAGAGTTGCTG 58.858 52.381 0.00 0.00 46.31 4.41
2287 2867 0.471617 AGGTTCAGAGTTGCTGTGCT 59.528 50.000 0.00 0.00 45.14 4.40
2290 2870 2.878406 GGTTCAGAGTTGCTGTGCTTTA 59.122 45.455 0.00 0.00 45.14 1.85
2293 2873 3.338249 TCAGAGTTGCTGTGCTTTATCC 58.662 45.455 0.00 0.00 45.14 2.59
2296 2876 2.421424 GAGTTGCTGTGCTTTATCCCTG 59.579 50.000 0.00 0.00 0.00 4.45
2307 2887 0.107017 TTATCCCTGCCTGCTTCAGC 60.107 55.000 0.00 0.00 42.50 4.26
2311 2891 2.263852 CTGCCTGCTTCAGCTCGA 59.736 61.111 0.00 0.00 42.66 4.04
2323 2903 1.303561 AGCTCGATTGGCCAAAGCA 60.304 52.632 32.11 15.89 42.56 3.91
2341 2921 1.479709 CATGGTCCCGTCTCTTCTCT 58.520 55.000 0.00 0.00 0.00 3.10
2342 2922 1.827969 CATGGTCCCGTCTCTTCTCTT 59.172 52.381 0.00 0.00 0.00 2.85
2343 2923 1.546961 TGGTCCCGTCTCTTCTCTTC 58.453 55.000 0.00 0.00 0.00 2.87
2344 2924 1.075698 TGGTCCCGTCTCTTCTCTTCT 59.924 52.381 0.00 0.00 0.00 2.85
2346 2926 1.746787 GTCCCGTCTCTTCTCTTCTCC 59.253 57.143 0.00 0.00 0.00 3.71
2347 2927 1.107945 CCCGTCTCTTCTCTTCTCCC 58.892 60.000 0.00 0.00 0.00 4.30
2348 2928 1.617263 CCCGTCTCTTCTCTTCTCCCA 60.617 57.143 0.00 0.00 0.00 4.37
2349 2929 2.171840 CCGTCTCTTCTCTTCTCCCAA 58.828 52.381 0.00 0.00 0.00 4.12
2350 2930 2.094442 CCGTCTCTTCTCTTCTCCCAAC 60.094 54.545 0.00 0.00 0.00 3.77
2351 2931 2.414824 CGTCTCTTCTCTTCTCCCAACG 60.415 54.545 0.00 0.00 0.00 4.10
2354 2934 0.610687 CTTCTCTTCTCCCAACGGCT 59.389 55.000 0.00 0.00 0.00 5.52
2357 2951 0.895530 CTCTTCTCCCAACGGCTGTA 59.104 55.000 0.00 0.00 0.00 2.74
2360 2954 0.759959 TTCTCCCAACGGCTGTAACA 59.240 50.000 0.00 0.00 0.00 2.41
2367 2961 2.210116 CAACGGCTGTAACAGTCAGTT 58.790 47.619 0.00 0.00 44.27 3.16
2373 2967 3.619038 GGCTGTAACAGTCAGTTATCTGC 59.381 47.826 0.00 0.00 44.06 4.26
2376 2970 4.245660 TGTAACAGTCAGTTATCTGCTGC 58.754 43.478 17.72 0.00 44.06 5.25
2385 2979 5.005740 TCAGTTATCTGCTGCAAAGTCAAT 58.994 37.500 3.02 0.00 41.10 2.57
2386 2980 5.474532 TCAGTTATCTGCTGCAAAGTCAATT 59.525 36.000 3.02 0.00 41.10 2.32
2387 2981 6.016024 TCAGTTATCTGCTGCAAAGTCAATTT 60.016 34.615 3.02 0.00 41.10 1.82
2388 2982 6.089016 CAGTTATCTGCTGCAAAGTCAATTTG 59.911 38.462 3.02 0.00 41.66 2.32
2395 2989 1.782044 CAAAGTCAATTTGCGGGTGG 58.218 50.000 0.00 0.00 41.77 4.61
2396 2990 1.339610 CAAAGTCAATTTGCGGGTGGA 59.660 47.619 0.00 0.00 41.77 4.02
2397 2991 1.247567 AAGTCAATTTGCGGGTGGAG 58.752 50.000 0.00 0.00 0.00 3.86
2398 2992 0.400213 AGTCAATTTGCGGGTGGAGA 59.600 50.000 0.00 0.00 0.00 3.71
2399 2993 1.004745 AGTCAATTTGCGGGTGGAGAT 59.995 47.619 0.00 0.00 0.00 2.75
2401 2995 1.281867 TCAATTTGCGGGTGGAGATCT 59.718 47.619 0.00 0.00 0.00 2.75
2402 2996 1.672881 CAATTTGCGGGTGGAGATCTC 59.327 52.381 14.75 14.75 0.00 2.75
2403 2997 0.911769 ATTTGCGGGTGGAGATCTCA 59.088 50.000 23.85 7.82 0.00 3.27
2404 2998 0.250234 TTTGCGGGTGGAGATCTCAG 59.750 55.000 23.85 10.31 0.00 3.35
2405 2999 0.614697 TTGCGGGTGGAGATCTCAGA 60.615 55.000 23.85 7.30 0.00 3.27
2406 3000 0.397675 TGCGGGTGGAGATCTCAGAT 60.398 55.000 23.85 0.00 0.00 2.90
2407 3001 0.316841 GCGGGTGGAGATCTCAGATC 59.683 60.000 23.85 6.55 0.00 2.75
2408 3002 1.697284 CGGGTGGAGATCTCAGATCA 58.303 55.000 23.85 9.95 0.00 2.92
2409 3003 1.612950 CGGGTGGAGATCTCAGATCAG 59.387 57.143 23.85 7.43 0.00 2.90
2410 3004 2.751143 CGGGTGGAGATCTCAGATCAGA 60.751 54.545 23.85 0.00 0.00 3.27
2411 3005 3.509442 GGGTGGAGATCTCAGATCAGAT 58.491 50.000 23.85 0.00 35.70 2.90
2413 3007 4.347583 GGGTGGAGATCTCAGATCAGATTT 59.652 45.833 23.85 0.00 32.94 2.17
2414 3008 5.541868 GGGTGGAGATCTCAGATCAGATTTA 59.458 44.000 23.85 0.00 32.94 1.40
2415 3009 6.042552 GGGTGGAGATCTCAGATCAGATTTAA 59.957 42.308 23.85 0.00 32.94 1.52
2416 3010 7.419518 GGGTGGAGATCTCAGATCAGATTTAAA 60.420 40.741 23.85 0.00 32.94 1.52
2418 3012 9.206870 GTGGAGATCTCAGATCAGATTTAAATC 57.793 37.037 23.85 18.70 32.94 2.17
2420 3014 9.775854 GGAGATCTCAGATCAGATTTAAATCAA 57.224 33.333 26.02 15.85 37.89 2.57
2424 3018 8.659925 TCTCAGATCAGATTTAAATCAAGAGC 57.340 34.615 26.02 23.47 37.89 4.09
2425 3019 8.262933 TCTCAGATCAGATTTAAATCAAGAGCA 58.737 33.333 26.49 14.66 37.89 4.26
2426 3020 8.797350 TCAGATCAGATTTAAATCAAGAGCAA 57.203 30.769 26.49 17.59 37.89 3.91
2427 3021 8.890718 TCAGATCAGATTTAAATCAAGAGCAAG 58.109 33.333 26.49 21.15 37.89 4.01
2428 3022 8.129840 CAGATCAGATTTAAATCAAGAGCAAGG 58.870 37.037 26.49 17.54 37.89 3.61
2430 3024 5.126061 TCAGATTTAAATCAAGAGCAAGGCC 59.874 40.000 26.02 0.00 37.89 5.19
2431 3025 5.018809 AGATTTAAATCAAGAGCAAGGCCA 58.981 37.500 26.02 0.00 37.89 5.36
2432 3026 5.481473 AGATTTAAATCAAGAGCAAGGCCAA 59.519 36.000 26.02 0.00 37.89 4.52
2433 3027 5.543507 TTTAAATCAAGAGCAAGGCCAAA 57.456 34.783 5.01 0.00 0.00 3.28
2434 3028 5.543507 TTAAATCAAGAGCAAGGCCAAAA 57.456 34.783 5.01 0.00 0.00 2.44
2435 3029 3.391506 AATCAAGAGCAAGGCCAAAAC 57.608 42.857 5.01 0.00 0.00 2.43
2437 3031 2.387757 TCAAGAGCAAGGCCAAAACTT 58.612 42.857 5.01 0.62 0.00 2.66
2438 3032 2.101249 TCAAGAGCAAGGCCAAAACTTG 59.899 45.455 5.01 13.62 46.15 3.16
2439 3033 2.071778 AGAGCAAGGCCAAAACTTGA 57.928 45.000 5.01 0.00 46.27 3.02
2440 3034 1.683385 AGAGCAAGGCCAAAACTTGAC 59.317 47.619 5.01 0.00 46.27 3.18
2441 3035 0.385390 AGCAAGGCCAAAACTTGACG 59.615 50.000 5.01 0.00 46.27 4.35
2442 3036 0.597377 GCAAGGCCAAAACTTGACGG 60.597 55.000 5.01 0.00 46.27 4.79
2443 3037 0.597377 CAAGGCCAAAACTTGACGGC 60.597 55.000 5.01 0.00 46.27 5.68
2444 3038 1.040339 AAGGCCAAAACTTGACGGCA 61.040 50.000 5.01 0.00 46.75 5.69
2445 3039 0.827507 AGGCCAAAACTTGACGGCAT 60.828 50.000 5.01 0.00 46.75 4.40
2446 3040 0.667184 GGCCAAAACTTGACGGCATG 60.667 55.000 1.93 1.93 46.75 4.06
2447 3041 1.284297 GCCAAAACTTGACGGCATGC 61.284 55.000 9.90 9.90 44.25 4.06
2448 3042 0.031857 CCAAAACTTGACGGCATGCA 59.968 50.000 21.36 0.00 0.00 3.96
2449 3043 1.537776 CCAAAACTTGACGGCATGCAA 60.538 47.619 21.36 3.83 0.00 4.08
2450 3044 1.522258 CAAAACTTGACGGCATGCAAC 59.478 47.619 21.36 10.36 0.00 4.17
2451 3045 0.743688 AAACTTGACGGCATGCAACA 59.256 45.000 21.36 12.93 0.00 3.33
2453 3047 0.311790 ACTTGACGGCATGCAACAAG 59.688 50.000 30.37 30.37 42.11 3.16
2454 3048 1.005294 CTTGACGGCATGCAACAAGC 61.005 55.000 25.54 8.15 45.96 4.01
2463 3057 2.174349 GCAACAAGCGCTTCGAGG 59.826 61.111 22.21 11.93 0.00 4.63
2466 3060 1.668151 AACAAGCGCTTCGAGGGTC 60.668 57.895 22.21 0.00 0.00 4.46
2467 3061 2.048222 CAAGCGCTTCGAGGGTCA 60.048 61.111 22.21 0.00 0.00 4.02
2469 3063 2.574955 AAGCGCTTCGAGGGTCAGT 61.575 57.895 18.98 0.00 0.00 3.41
2470 3064 1.248785 AAGCGCTTCGAGGGTCAGTA 61.249 55.000 18.98 0.00 0.00 2.74
2471 3065 1.214589 GCGCTTCGAGGGTCAGTAA 59.785 57.895 0.00 0.00 0.00 2.24
2472 3066 0.179108 GCGCTTCGAGGGTCAGTAAT 60.179 55.000 0.00 0.00 0.00 1.89
2474 3068 2.288273 GCGCTTCGAGGGTCAGTAATAT 60.288 50.000 0.00 0.00 0.00 1.28
2475 3069 3.566523 CGCTTCGAGGGTCAGTAATATC 58.433 50.000 0.00 0.00 0.00 1.63
2476 3070 3.566523 GCTTCGAGGGTCAGTAATATCG 58.433 50.000 0.00 0.00 0.00 2.92
2479 3073 2.552743 TCGAGGGTCAGTAATATCGCTG 59.447 50.000 1.32 1.32 0.00 5.18
2480 3074 2.552743 CGAGGGTCAGTAATATCGCTGA 59.447 50.000 5.40 5.40 39.17 4.26
2481 3075 3.004419 CGAGGGTCAGTAATATCGCTGAA 59.996 47.826 9.79 0.00 42.51 3.02
2482 3076 4.499188 CGAGGGTCAGTAATATCGCTGAAA 60.499 45.833 9.79 0.00 42.51 2.69
2483 3077 5.353394 AGGGTCAGTAATATCGCTGAAAA 57.647 39.130 9.79 0.00 42.51 2.29
2484 3078 5.116882 AGGGTCAGTAATATCGCTGAAAAC 58.883 41.667 9.79 5.29 42.51 2.43
2485 3079 4.272748 GGGTCAGTAATATCGCTGAAAACC 59.727 45.833 9.79 8.26 42.51 3.27
2486 3080 4.873827 GGTCAGTAATATCGCTGAAAACCA 59.126 41.667 9.79 0.00 42.51 3.67
2487 3081 5.527582 GGTCAGTAATATCGCTGAAAACCAT 59.472 40.000 9.79 0.00 42.51 3.55
2488 3082 6.422223 GTCAGTAATATCGCTGAAAACCATG 58.578 40.000 9.79 0.00 42.51 3.66
2489 3083 6.257849 GTCAGTAATATCGCTGAAAACCATGA 59.742 38.462 9.79 0.00 42.51 3.07
2490 3084 6.257849 TCAGTAATATCGCTGAAAACCATGAC 59.742 38.462 0.00 0.00 38.61 3.06
2491 3085 4.900635 AATATCGCTGAAAACCATGACC 57.099 40.909 0.00 0.00 0.00 4.02
2494 3088 1.086696 CGCTGAAAACCATGACCGAT 58.913 50.000 0.00 0.00 0.00 4.18
2495 3089 1.062587 CGCTGAAAACCATGACCGATC 59.937 52.381 0.00 0.00 0.00 3.69
2496 3090 2.083774 GCTGAAAACCATGACCGATCA 58.916 47.619 0.00 0.00 39.83 2.92
2497 3091 2.096496 GCTGAAAACCATGACCGATCAG 59.904 50.000 0.00 2.88 38.57 2.90
2498 3092 3.338249 CTGAAAACCATGACCGATCAGT 58.662 45.455 0.00 0.00 38.57 3.41
2500 3094 3.501828 TGAAAACCATGACCGATCAGTTG 59.498 43.478 0.00 0.00 38.57 3.16
2503 3097 1.066143 ACCATGACCGATCAGTTGACC 60.066 52.381 0.00 0.00 38.57 4.02
2521 3430 2.743928 CAGTCCTGGCCGAACAGC 60.744 66.667 0.00 0.00 37.16 4.40
2579 3488 4.899239 CGAGAGGCACATCCCCGC 62.899 72.222 0.00 0.00 34.51 6.13
2596 3508 4.148825 CGGCCCCTCGACCTTGAG 62.149 72.222 0.00 0.00 35.70 3.02
2610 3522 1.978580 CCTTGAGGTAGTTCCCACTGT 59.021 52.381 0.00 0.00 36.75 3.55
2623 3535 3.300765 ACTGTCGTGGTCGGGGTC 61.301 66.667 0.00 0.00 37.69 4.46
2624 3536 4.065281 CTGTCGTGGTCGGGGTCC 62.065 72.222 0.00 0.00 37.69 4.46
2638 3550 4.736896 GTCCCTGCGACGGTGGAC 62.737 72.222 0.00 0.00 40.40 4.02
2649 3561 3.066814 GGTGGACGAGGTAGCCGT 61.067 66.667 7.94 7.94 43.56 5.68
2650 3562 2.181021 GTGGACGAGGTAGCCGTG 59.819 66.667 12.12 0.00 40.67 4.94
2651 3563 3.066190 TGGACGAGGTAGCCGTGG 61.066 66.667 12.12 0.00 40.67 4.94
2652 3564 3.066814 GGACGAGGTAGCCGTGGT 61.067 66.667 12.12 0.00 40.67 4.16
2653 3565 2.488820 GACGAGGTAGCCGTGGTC 59.511 66.667 12.12 0.00 40.67 4.02
2654 3566 3.392595 GACGAGGTAGCCGTGGTCG 62.393 68.421 12.12 6.14 40.67 4.79
2655 3567 3.437795 CGAGGTAGCCGTGGTCGT 61.438 66.667 0.00 0.00 35.01 4.34
2656 3568 2.181021 GAGGTAGCCGTGGTCGTG 59.819 66.667 0.00 0.00 35.01 4.35
2657 3569 3.352338 GAGGTAGCCGTGGTCGTGG 62.352 68.421 0.00 0.00 35.01 4.94
2658 3570 3.688159 GGTAGCCGTGGTCGTGGT 61.688 66.667 0.00 0.00 35.01 4.16
2659 3571 2.126189 GTAGCCGTGGTCGTGGTC 60.126 66.667 0.00 0.00 35.01 4.02
2660 3572 3.740397 TAGCCGTGGTCGTGGTCG 61.740 66.667 0.00 0.00 38.55 4.79
2679 3591 4.308458 CGTCCCTGCAACGGTGGA 62.308 66.667 0.90 0.00 36.51 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.477224 TTGCCAGCGAACGTTTGCC 62.477 57.895 31.97 19.68 38.37 4.52
11 12 3.030652 CCTTGCCAGCGAACGTTT 58.969 55.556 0.46 0.00 0.00 3.60
22 23 1.747325 TTTGCTGGAAGTGCCTTGCC 61.747 55.000 3.73 0.00 36.48 4.52
24 25 0.318107 CGTTTGCTGGAAGTGCCTTG 60.318 55.000 0.00 0.00 37.63 3.61
31 32 1.600636 TGAGGGCGTTTGCTGGAAG 60.601 57.895 0.00 0.00 42.25 3.46
34 35 2.192861 TTGTGAGGGCGTTTGCTGG 61.193 57.895 0.00 0.00 42.25 4.85
43 44 1.106285 GATCCAATGGTTGTGAGGGC 58.894 55.000 0.00 0.00 0.00 5.19
65 66 6.368516 CGTTTTTAAATGCCATCCAAGTGATT 59.631 34.615 0.00 0.00 0.00 2.57
71 72 5.866633 GTGATCGTTTTTAAATGCCATCCAA 59.133 36.000 0.00 0.00 0.00 3.53
81 82 9.482627 AAATAATTGCCAGTGATCGTTTTTAAA 57.517 25.926 0.00 0.00 0.00 1.52
82 83 9.134734 GAAATAATTGCCAGTGATCGTTTTTAA 57.865 29.630 0.00 0.00 0.00 1.52
83 84 8.519526 AGAAATAATTGCCAGTGATCGTTTTTA 58.480 29.630 0.00 0.00 0.00 1.52
87 88 6.515272 AAGAAATAATTGCCAGTGATCGTT 57.485 33.333 0.00 0.00 0.00 3.85
89 90 8.773645 TGTATAAGAAATAATTGCCAGTGATCG 58.226 33.333 0.00 0.00 0.00 3.69
92 93 8.849168 CCATGTATAAGAAATAATTGCCAGTGA 58.151 33.333 0.00 0.00 0.00 3.41
93 94 8.084073 CCCATGTATAAGAAATAATTGCCAGTG 58.916 37.037 0.00 0.00 0.00 3.66
94 95 8.004215 TCCCATGTATAAGAAATAATTGCCAGT 58.996 33.333 0.00 0.00 0.00 4.00
95 96 8.408043 TCCCATGTATAAGAAATAATTGCCAG 57.592 34.615 0.00 0.00 0.00 4.85
109 110 8.299990 ACGGAATGAAAAATTCCCATGTATAA 57.700 30.769 10.71 0.00 43.48 0.98
117 118 5.348164 CCATGTACGGAATGAAAAATTCCC 58.652 41.667 10.71 0.00 43.48 3.97
119 120 5.406649 TGCCATGTACGGAATGAAAAATTC 58.593 37.500 0.00 0.00 0.00 2.17
125 126 3.380004 GGAAATGCCATGTACGGAATGAA 59.620 43.478 0.00 0.00 36.34 2.57
126 127 2.948979 GGAAATGCCATGTACGGAATGA 59.051 45.455 0.00 0.00 36.34 2.57
129 130 1.283613 AGGGAAATGCCATGTACGGAA 59.716 47.619 0.00 0.00 38.95 4.30
150 151 8.452534 ACATAACTAAATTTGCCATGCATTTTG 58.547 29.630 0.00 0.00 38.76 2.44
155 156 5.873712 CCAACATAACTAAATTTGCCATGCA 59.126 36.000 0.00 0.00 36.47 3.96
161 162 5.220643 GCCATGCCAACATAACTAAATTTGC 60.221 40.000 0.00 0.00 33.67 3.68
165 166 3.951037 TCGCCATGCCAACATAACTAAAT 59.049 39.130 0.00 0.00 33.67 1.40
172 173 0.179048 CCTCTCGCCATGCCAACATA 60.179 55.000 0.00 0.00 33.67 2.29
175 176 2.825836 CCCTCTCGCCATGCCAAC 60.826 66.667 0.00 0.00 0.00 3.77
186 187 2.182030 CCAGCGAACGTCCCTCTC 59.818 66.667 0.00 0.00 0.00 3.20
189 190 2.748058 AATTGCCAGCGAACGTCCCT 62.748 55.000 0.00 0.00 0.00 4.20
192 193 1.225745 CGAATTGCCAGCGAACGTC 60.226 57.895 0.00 0.00 0.00 4.34
193 194 2.860293 CGAATTGCCAGCGAACGT 59.140 55.556 0.00 0.00 0.00 3.99
215 216 5.258685 TGTTTATCTAGCGAACGTTGTTG 57.741 39.130 5.00 0.00 0.00 3.33
216 217 5.407387 ACATGTTTATCTAGCGAACGTTGTT 59.593 36.000 5.00 0.00 0.00 2.83
217 218 4.927425 ACATGTTTATCTAGCGAACGTTGT 59.073 37.500 5.00 0.00 0.00 3.32
218 219 5.450376 ACATGTTTATCTAGCGAACGTTG 57.550 39.130 5.00 0.00 0.00 4.10
236 237 8.980481 ACCAAGAACCTTATATTTAGGACATG 57.020 34.615 9.82 0.00 36.58 3.21
237 238 9.628500 GAACCAAGAACCTTATATTTAGGACAT 57.372 33.333 9.82 0.00 36.58 3.06
238 239 8.832735 AGAACCAAGAACCTTATATTTAGGACA 58.167 33.333 9.82 0.00 36.58 4.02
254 255 5.012354 AGACCCGTAATGTAAGAACCAAGAA 59.988 40.000 0.00 0.00 0.00 2.52
255 256 4.529377 AGACCCGTAATGTAAGAACCAAGA 59.471 41.667 0.00 0.00 0.00 3.02
272 273 4.514066 GGCCATACAAATTTACTAGACCCG 59.486 45.833 0.00 0.00 0.00 5.28
276 277 6.964464 TCCAAGGCCATACAAATTTACTAGA 58.036 36.000 5.01 0.00 0.00 2.43
336 337 2.125269 CTCCAAACGGTAGCGGGG 60.125 66.667 19.72 16.20 0.00 5.73
337 338 2.125269 CCTCCAAACGGTAGCGGG 60.125 66.667 19.72 10.42 0.00 6.13
341 342 2.838736 CATCATCCCTCCAAACGGTAG 58.161 52.381 0.00 0.00 0.00 3.18
344 345 0.394216 TGCATCATCCCTCCAAACGG 60.394 55.000 0.00 0.00 0.00 4.44
363 364 4.446371 GGTGAGATCTGAAACCGATGAAT 58.554 43.478 0.00 0.00 0.00 2.57
380 381 0.680921 ATCCAATGGTTGCGGGTGAG 60.681 55.000 0.00 0.00 0.00 3.51
383 384 1.214175 TCATATCCAATGGTTGCGGGT 59.786 47.619 0.00 0.00 0.00 5.28
401 402 5.008911 CACCTTGAACATGATGACAAAGTCA 59.991 40.000 0.00 1.95 46.90 3.41
402 403 5.455392 CACCTTGAACATGATGACAAAGTC 58.545 41.667 0.00 0.00 0.00 3.01
408 409 4.082625 TGAATGCACCTTGAACATGATGAC 60.083 41.667 0.00 0.00 0.00 3.06
418 419 2.198827 AACCGATGAATGCACCTTGA 57.801 45.000 0.00 0.00 0.00 3.02
436 437 1.691976 CAGGCTATGTGGGATCCGTAA 59.308 52.381 5.45 0.00 0.00 3.18
438 439 1.410850 CCAGGCTATGTGGGATCCGT 61.411 60.000 5.45 0.00 0.00 4.69
480 481 3.397618 TCCACCAAGAATCCTCCTTGAAA 59.602 43.478 0.00 0.00 42.57 2.69
541 548 0.320421 AATCACCCACACCGAGAACG 60.320 55.000 0.00 0.00 39.43 3.95
570 577 3.182967 CCTCTAACATCAGCGAGTTGTC 58.817 50.000 0.00 0.00 30.03 3.18
578 585 9.331282 AGAATAATAACAACCTCTAACATCAGC 57.669 33.333 0.00 0.00 0.00 4.26
600 607 7.935338 CAAAACAGACTTTGCAATACAGAAT 57.065 32.000 0.00 0.00 30.03 2.40
687 694 2.423577 GTGTTGACCACAGGACATACC 58.576 52.381 0.00 0.00 43.92 2.73
693 700 0.537653 TCAACGTGTTGACCACAGGA 59.462 50.000 11.21 0.00 43.90 3.86
703 710 1.094785 GCATAGGCCATCAACGTGTT 58.905 50.000 5.01 0.00 0.00 3.32
724 731 9.292195 TGCTAGCTTAGGTAATAAAACTTTTGT 57.708 29.630 17.23 0.00 0.00 2.83
730 737 6.200475 CGAGGTGCTAGCTTAGGTAATAAAAC 59.800 42.308 17.23 0.15 0.00 2.43
738 745 0.970937 TGCGAGGTGCTAGCTTAGGT 60.971 55.000 17.23 0.00 46.63 3.08
740 747 0.173481 TGTGCGAGGTGCTAGCTTAG 59.827 55.000 17.23 4.23 46.63 2.18
745 752 0.103026 TAGCATGTGCGAGGTGCTAG 59.897 55.000 8.30 0.00 46.54 3.42
761 768 1.195448 CGGCCATCGACATGAATTAGC 59.805 52.381 2.24 0.00 42.43 3.09
762 769 2.754472 TCGGCCATCGACATGAATTAG 58.246 47.619 2.24 0.00 43.74 1.73
790 797 1.524008 AAACTAAACTGCCCAGCCGC 61.524 55.000 0.00 0.00 0.00 6.53
794 801 1.000274 GTGCCAAACTAAACTGCCCAG 60.000 52.381 0.00 0.00 0.00 4.45
805 812 6.377146 CACTATATGTTAAAGGGTGCCAAACT 59.623 38.462 0.00 0.00 0.00 2.66
836 843 7.020827 AGACTATTCAACAAAGGAGGAATCA 57.979 36.000 0.00 0.00 32.62 2.57
850 857 9.905713 ATGCTGGAAATTAAGTAGACTATTCAA 57.094 29.630 0.00 0.00 0.00 2.69
855 862 7.109501 TGCAATGCTGGAAATTAAGTAGACTA 58.890 34.615 6.82 0.00 0.00 2.59
879 886 2.104451 ACTAGGCCTTCTCAGCATCATG 59.896 50.000 12.58 0.00 0.00 3.07
892 899 2.312140 TCTTGTAGAGTCCACTAGGCCT 59.688 50.000 11.78 11.78 33.74 5.19
910 917 7.744087 TCGCATAACAAGGCAAATATATCTT 57.256 32.000 0.00 0.00 0.00 2.40
926 933 1.275657 CGTTCGGCCATCGCATAAC 59.724 57.895 2.24 0.00 39.05 1.89
928 935 1.880796 CACGTTCGGCCATCGCATA 60.881 57.895 2.24 0.00 39.05 3.14
929 936 3.195002 CACGTTCGGCCATCGCAT 61.195 61.111 2.24 0.00 39.05 4.73
930 937 4.365505 TCACGTTCGGCCATCGCA 62.366 61.111 2.24 0.00 39.05 5.10
936 943 4.681978 ACAGGCTCACGTTCGGCC 62.682 66.667 13.37 13.37 45.57 6.13
958 965 3.807622 GCTTGCTATATAACAGACGCCAA 59.192 43.478 0.00 0.00 0.00 4.52
967 974 4.651778 TGGGATGGTGCTTGCTATATAAC 58.348 43.478 0.00 0.00 0.00 1.89
971 978 2.126882 ACTGGGATGGTGCTTGCTATA 58.873 47.619 0.00 0.00 0.00 1.31
1006 1013 3.643792 ACTCCACTACTGAAAGAGCTTGT 59.356 43.478 0.00 0.00 37.43 3.16
1010 1017 3.580731 GTCACTCCACTACTGAAAGAGC 58.419 50.000 0.00 0.00 37.43 4.09
1018 1027 0.966370 GGCTCGGTCACTCCACTACT 60.966 60.000 0.00 0.00 35.57 2.57
1042 1051 1.134098 CGAACACCTTGGAGGCCATAT 60.134 52.381 5.01 0.00 39.63 1.78
1043 1052 0.251916 CGAACACCTTGGAGGCCATA 59.748 55.000 5.01 0.00 39.63 2.74
1065 1074 1.432270 GCCAGAACGATAGCCAGCAC 61.432 60.000 0.00 0.00 42.67 4.40
1119 1128 0.658829 CGATCTGATGGCGTCGTCTC 60.659 60.000 11.10 0.00 0.00 3.36
1127 1136 2.352960 GACTTTTGGACGATCTGATGGC 59.647 50.000 0.00 0.00 0.00 4.40
1130 1139 5.046591 TGGTAAGACTTTTGGACGATCTGAT 60.047 40.000 0.00 0.00 0.00 2.90
1131 1140 4.282449 TGGTAAGACTTTTGGACGATCTGA 59.718 41.667 0.00 0.00 0.00 3.27
1146 1155 2.668457 CAGCATCTTGACGTGGTAAGAC 59.332 50.000 0.00 0.00 35.91 3.01
1147 1156 2.930887 GCAGCATCTTGACGTGGTAAGA 60.931 50.000 0.00 0.15 37.34 2.10
1151 1160 0.671781 GAGCAGCATCTTGACGTGGT 60.672 55.000 0.00 0.00 0.00 4.16
1152 1161 1.364626 GGAGCAGCATCTTGACGTGG 61.365 60.000 0.00 0.00 0.00 4.94
1169 1178 2.332117 AGTTTGAAGGTCTTACCCGGA 58.668 47.619 0.73 0.00 39.75 5.14
1172 1181 4.885325 TGTTCAAGTTTGAAGGTCTTACCC 59.115 41.667 7.51 0.00 46.80 3.69
1193 1202 3.386768 ACATAGCAAGAACGACTGTGT 57.613 42.857 0.00 0.00 31.82 3.72
1232 1241 4.068599 GTTTCTTTCCCCTCTCTGAACTG 58.931 47.826 0.00 0.00 0.00 3.16
1233 1242 3.977326 AGTTTCTTTCCCCTCTCTGAACT 59.023 43.478 0.00 0.00 0.00 3.01
1244 1253 6.018751 GCAAATGAAGAACAAGTTTCTTTCCC 60.019 38.462 1.00 0.00 38.73 3.97
1246 1255 7.524294 TGCAAATGAAGAACAAGTTTCTTTC 57.476 32.000 1.00 0.00 38.73 2.62
1247 1256 9.768662 ATATGCAAATGAAGAACAAGTTTCTTT 57.231 25.926 0.00 0.00 38.73 2.52
1249 1258 8.362639 ACATATGCAAATGAAGAACAAGTTTCT 58.637 29.630 1.58 0.00 0.00 2.52
1250 1259 8.524870 ACATATGCAAATGAAGAACAAGTTTC 57.475 30.769 1.58 0.00 0.00 2.78
1251 1260 8.891671 AACATATGCAAATGAAGAACAAGTTT 57.108 26.923 1.58 0.00 0.00 2.66
1268 1339 4.083484 GGTGCCTACGGAAATAACATATGC 60.083 45.833 1.58 0.00 0.00 3.14
1272 1343 3.637911 TGGTGCCTACGGAAATAACAT 57.362 42.857 0.00 0.00 0.00 2.71
1282 1353 3.773860 TTGCAAATTATGGTGCCTACG 57.226 42.857 0.00 0.00 40.14 3.51
1288 1359 7.750014 GCCATAAAAAGTTTGCAAATTATGGTG 59.250 33.333 35.30 23.95 45.84 4.17
1293 1364 8.125448 GTGTTGCCATAAAAAGTTTGCAAATTA 58.875 29.630 16.21 10.08 40.03 1.40
1303 1374 4.577283 ACGTACAGTGTTGCCATAAAAAGT 59.423 37.500 0.00 0.00 0.00 2.66
1312 1383 4.851010 ACAATTTTACGTACAGTGTTGCC 58.149 39.130 0.00 0.00 0.00 4.52
1319 1390 9.155053 GAAAAACTCAGACAATTTTACGTACAG 57.845 33.333 0.00 0.00 0.00 2.74
1327 1398 9.252962 CTTGCTATGAAAAACTCAGACAATTTT 57.747 29.630 0.00 0.00 37.52 1.82
1345 1416 3.976793 ACAAATGGATCGCTTGCTATG 57.023 42.857 1.23 0.00 0.00 2.23
1350 1421 6.357198 CAAAAAGAAACAAATGGATCGCTTG 58.643 36.000 0.00 0.00 0.00 4.01
1354 1425 4.152223 GGGCAAAAAGAAACAAATGGATCG 59.848 41.667 0.00 0.00 0.00 3.69
1358 1429 3.314913 GTGGGGCAAAAAGAAACAAATGG 59.685 43.478 0.00 0.00 0.00 3.16
1374 1445 4.700365 GAAAGCAACGCGTGGGGC 62.700 66.667 14.98 17.78 38.69 5.80
1378 1449 2.916111 AGTAAATGAAAGCAACGCGTG 58.084 42.857 14.98 8.57 0.00 5.34
1383 1454 8.116136 CCTTTGTTTCAAGTAAATGAAAGCAAC 58.884 33.333 2.92 0.00 46.73 4.17
1395 1466 5.009610 GCTGAATGTCCCTTTGTTTCAAGTA 59.990 40.000 0.00 0.00 0.00 2.24
1396 1467 4.202151 GCTGAATGTCCCTTTGTTTCAAGT 60.202 41.667 0.00 0.00 0.00 3.16
1405 1476 2.646798 AGAAGAGGCTGAATGTCCCTTT 59.353 45.455 0.00 0.00 0.00 3.11
1415 1486 5.191426 ACTACGTATACAAGAAGAGGCTGA 58.809 41.667 3.32 0.00 0.00 4.26
1440 1514 7.165460 TCGTCAGAATCTAACCAAGTATTCA 57.835 36.000 0.00 0.00 32.04 2.57
1452 1526 4.736126 TTGGAGCAATCGTCAGAATCTA 57.264 40.909 0.00 0.00 0.00 1.98
1454 1528 4.889832 AATTGGAGCAATCGTCAGAATC 57.110 40.909 0.00 0.00 32.43 2.52
1457 1531 4.278170 ACAAAAATTGGAGCAATCGTCAGA 59.722 37.500 0.00 0.00 32.43 3.27
1458 1532 4.549458 ACAAAAATTGGAGCAATCGTCAG 58.451 39.130 0.00 0.00 32.43 3.51
1500 1578 2.707849 GCTGCACCATTCCCAGCTG 61.708 63.158 6.78 6.78 46.28 4.24
1501 1579 2.362120 GCTGCACCATTCCCAGCT 60.362 61.111 4.74 0.00 46.28 4.24
1524 1602 0.835941 CTCCTCAGTGAATCCAGGGG 59.164 60.000 0.00 0.00 0.00 4.79
1526 1604 2.170187 CCTTCTCCTCAGTGAATCCAGG 59.830 54.545 0.00 0.00 0.00 4.45
1531 1609 2.776536 CCATCCCTTCTCCTCAGTGAAT 59.223 50.000 0.00 0.00 0.00 2.57
1567 1645 4.858680 GGGGTCGGCCTTGCTAGC 62.859 72.222 5.77 8.10 34.45 3.42
1582 1660 3.371059 GCTTTAAGGAAGGAGGAAGAGGG 60.371 52.174 0.00 0.00 35.82 4.30
1619 1697 8.719645 AGCAGATACAAACTCTAGGAAGATAT 57.280 34.615 0.00 0.00 0.00 1.63
1624 1716 6.798427 ATGAGCAGATACAAACTCTAGGAA 57.202 37.500 0.00 0.00 0.00 3.36
1642 1734 6.400515 GCGTACTCTGCTTCATTATAATGAGC 60.401 42.308 26.37 26.37 45.35 4.26
1649 1741 4.034510 GCTTTGCGTACTCTGCTTCATTAT 59.965 41.667 0.00 0.00 0.00 1.28
1683 1775 2.642807 ACCATTTGTAGCCAGTAGTGGT 59.357 45.455 18.02 7.56 46.96 4.16
1707 1800 1.397390 CGGTACCATAGCGGGGAACT 61.397 60.000 13.54 0.00 45.08 3.01
1724 1817 4.024048 GTCCAGGCAAACATCATATAACGG 60.024 45.833 0.00 0.00 0.00 4.44
1760 1856 1.769026 TAGCACACTGTTTTGCCCAA 58.231 45.000 7.38 0.00 39.75 4.12
1801 1897 2.154854 TTGCTGTTCAGAACCGAGAG 57.845 50.000 10.93 2.64 0.00 3.20
1825 1921 6.407475 AATATGCACAAAGAAATTTTCGGC 57.593 33.333 3.57 5.10 34.02 5.54
1827 1923 8.101510 CGGTAAATATGCACAAAGAAATTTTCG 58.898 33.333 3.57 0.00 34.02 3.46
1828 1924 8.921670 ACGGTAAATATGCACAAAGAAATTTTC 58.078 29.630 0.66 0.66 0.00 2.29
1853 1950 5.922053 AGGGGGAAACGAGTACATAAATAC 58.078 41.667 0.00 0.00 0.00 1.89
1855 1952 4.720273 AGAGGGGGAAACGAGTACATAAAT 59.280 41.667 0.00 0.00 0.00 1.40
1867 1964 2.246849 TCCTAGTCCTAGAGGGGGAAAC 59.753 54.545 2.86 0.00 35.21 2.78
1871 1968 3.052033 TCTTTTCCTAGTCCTAGAGGGGG 60.052 52.174 2.86 0.00 35.21 5.40
1872 1969 4.267341 TCTTTTCCTAGTCCTAGAGGGG 57.733 50.000 2.86 0.00 35.21 4.79
1873 1970 5.958987 TCTTTCTTTTCCTAGTCCTAGAGGG 59.041 44.000 2.86 0.00 35.21 4.30
1875 1972 6.153680 TGCTCTTTCTTTTCCTAGTCCTAGAG 59.846 42.308 2.86 0.00 35.21 2.43
1898 1996 0.467804 AAAATGGTGTGTGGGGTTGC 59.532 50.000 0.00 0.00 0.00 4.17
1957 2071 3.746045 ACTGTGTAGTGTGTACCAAGG 57.254 47.619 0.00 0.00 35.34 3.61
1989 2103 2.031157 CCTTGTTGGACAGTAAAAGGCG 60.031 50.000 0.00 0.00 38.35 5.52
1991 2105 3.951680 ACACCTTGTTGGACAGTAAAAGG 59.048 43.478 0.00 0.00 40.04 3.11
2015 2129 4.382147 GGCCGATCTTTCTCTCTAGTTTGT 60.382 45.833 0.00 0.00 0.00 2.83
2026 2140 2.859165 TTGTTCTGGCCGATCTTTCT 57.141 45.000 0.00 0.00 0.00 2.52
2042 2156 1.818674 GGCGGTTTCAGGATCATTTGT 59.181 47.619 0.00 0.00 0.00 2.83
2049 2163 1.280710 TGTACATGGCGGTTTCAGGAT 59.719 47.619 0.00 0.00 0.00 3.24
2052 2166 1.468520 CCTTGTACATGGCGGTTTCAG 59.531 52.381 14.31 0.00 0.00 3.02
2055 2169 1.073284 ACTCCTTGTACATGGCGGTTT 59.927 47.619 20.39 0.00 0.00 3.27
2060 2174 1.834263 AGGAGACTCCTTGTACATGGC 59.166 52.381 18.94 8.87 46.91 4.40
2077 2191 1.070758 GCACACAGGAAGAACAGAGGA 59.929 52.381 0.00 0.00 0.00 3.71
2080 2194 1.070758 GAGGCACACAGGAAGAACAGA 59.929 52.381 0.00 0.00 0.00 3.41
2127 2241 0.388520 TGCACAAGGAGATCACGACG 60.389 55.000 0.00 0.00 0.00 5.12
2166 2280 7.095695 TGAAGAAAACGGAACTGAAGAAATT 57.904 32.000 0.00 0.00 0.00 1.82
2167 2281 6.318900 ACTGAAGAAAACGGAACTGAAGAAAT 59.681 34.615 0.00 0.00 0.00 2.17
2170 2284 4.766375 ACTGAAGAAAACGGAACTGAAGA 58.234 39.130 0.00 0.00 0.00 2.87
2173 2287 4.570772 CAGAACTGAAGAAAACGGAACTGA 59.429 41.667 0.00 0.00 0.00 3.41
2175 2289 4.514401 ACAGAACTGAAGAAAACGGAACT 58.486 39.130 8.87 0.00 0.00 3.01
2176 2290 4.331717 TGACAGAACTGAAGAAAACGGAAC 59.668 41.667 8.87 0.00 0.00 3.62
2177 2291 4.509616 TGACAGAACTGAAGAAAACGGAA 58.490 39.130 8.87 0.00 0.00 4.30
2178 2292 4.119862 CTGACAGAACTGAAGAAAACGGA 58.880 43.478 8.87 0.00 0.00 4.69
2179 2293 3.248602 CCTGACAGAACTGAAGAAAACGG 59.751 47.826 3.32 0.00 0.00 4.44
2181 2295 5.354234 TGAACCTGACAGAACTGAAGAAAAC 59.646 40.000 3.32 0.00 0.00 2.43
2194 2763 2.411904 GAGCAACTCTGAACCTGACAG 58.588 52.381 0.00 0.00 36.80 3.51
2198 2767 1.805869 CTGGAGCAACTCTGAACCTG 58.194 55.000 0.00 0.00 0.00 4.00
2219 2788 2.895242 AAGGGAGAAAGCAGAGCAAT 57.105 45.000 0.00 0.00 0.00 3.56
2237 2806 5.646360 ACTGAAGAAAACGGAACTGAAGAAA 59.354 36.000 0.00 0.00 0.00 2.52
2239 2808 4.766375 ACTGAAGAAAACGGAACTGAAGA 58.234 39.130 0.00 0.00 0.00 2.87
2268 2837 0.471617 AGCACAGCAACTCTGAACCT 59.528 50.000 0.00 0.00 45.72 3.50
2269 2838 1.312815 AAGCACAGCAACTCTGAACC 58.687 50.000 0.00 0.00 45.72 3.62
2283 2863 0.394899 AGCAGGCAGGGATAAAGCAC 60.395 55.000 0.00 0.00 0.00 4.40
2287 2867 1.683011 GCTGAAGCAGGCAGGGATAAA 60.683 52.381 0.00 0.00 41.59 1.40
2290 2870 2.268167 GAGCTGAAGCAGGCAGGGAT 62.268 60.000 4.90 0.00 45.16 3.85
2293 2873 2.590391 ATCGAGCTGAAGCAGGCAGG 62.590 60.000 4.90 0.00 45.16 4.85
2296 2876 1.712977 CCAATCGAGCTGAAGCAGGC 61.713 60.000 4.90 0.00 45.16 4.85
2307 2887 0.101759 CCATGCTTTGGCCAATCGAG 59.898 55.000 21.26 15.27 39.09 4.04
2323 2903 2.104170 GAAGAGAAGAGACGGGACCAT 58.896 52.381 0.00 0.00 0.00 3.55
2326 2906 1.746787 GGAGAAGAGAAGAGACGGGAC 59.253 57.143 0.00 0.00 0.00 4.46
2330 2910 2.414824 CGTTGGGAGAAGAGAAGAGACG 60.415 54.545 0.00 0.00 0.00 4.18
2341 2921 0.759959 TGTTACAGCCGTTGGGAGAA 59.240 50.000 0.00 0.00 34.06 2.87
2342 2922 0.320374 CTGTTACAGCCGTTGGGAGA 59.680 55.000 0.00 0.00 34.06 3.71
2343 2923 0.034896 ACTGTTACAGCCGTTGGGAG 59.965 55.000 12.80 0.00 34.37 4.30
2344 2924 0.034337 GACTGTTACAGCCGTTGGGA 59.966 55.000 12.80 0.00 34.37 4.37
2346 2926 1.148310 CTGACTGTTACAGCCGTTGG 58.852 55.000 12.80 0.00 34.37 3.77
2347 2927 1.865865 ACTGACTGTTACAGCCGTTG 58.134 50.000 12.80 1.56 38.74 4.10
2348 2928 2.614829 AACTGACTGTTACAGCCGTT 57.385 45.000 12.80 10.00 38.74 4.44
2349 2929 3.510360 AGATAACTGACTGTTACAGCCGT 59.490 43.478 12.80 4.23 43.08 5.68
2350 2930 3.859961 CAGATAACTGACTGTTACAGCCG 59.140 47.826 12.80 3.59 46.03 5.52
2351 2931 3.619038 GCAGATAACTGACTGTTACAGCC 59.381 47.826 12.80 1.25 46.03 4.85
2354 2934 4.245660 GCAGCAGATAACTGACTGTTACA 58.754 43.478 18.48 0.00 46.03 2.41
2357 2951 3.407424 TGCAGCAGATAACTGACTGTT 57.593 42.857 18.48 3.08 46.03 3.16
2360 2954 3.999663 GACTTTGCAGCAGATAACTGACT 59.000 43.478 3.85 0.00 46.03 3.41
2376 2970 1.339610 TCCACCCGCAAATTGACTTTG 59.660 47.619 0.00 0.00 45.86 2.77
2385 2979 0.250234 CTGAGATCTCCACCCGCAAA 59.750 55.000 20.03 0.00 0.00 3.68
2386 2980 0.614697 TCTGAGATCTCCACCCGCAA 60.615 55.000 20.03 0.00 0.00 4.85
2387 2981 0.397675 ATCTGAGATCTCCACCCGCA 60.398 55.000 20.03 0.00 0.00 5.69
2388 2982 0.316841 GATCTGAGATCTCCACCCGC 59.683 60.000 20.03 1.41 0.00 6.13
2389 2983 1.612950 CTGATCTGAGATCTCCACCCG 59.387 57.143 21.83 3.86 0.00 5.28
2390 2984 2.956132 TCTGATCTGAGATCTCCACCC 58.044 52.381 21.83 7.65 0.00 4.61
2391 2985 5.549742 AAATCTGATCTGAGATCTCCACC 57.450 43.478 21.83 7.31 31.07 4.61
2392 2986 9.206870 GATTTAAATCTGATCTGAGATCTCCAC 57.793 37.037 21.83 8.99 31.07 4.02
2394 2988 9.775854 TTGATTTAAATCTGATCTGAGATCTCC 57.224 33.333 24.77 5.06 36.39 3.71
2398 2992 9.275398 GCTCTTGATTTAAATCTGATCTGAGAT 57.725 33.333 24.77 0.00 36.39 2.75
2399 2993 8.262933 TGCTCTTGATTTAAATCTGATCTGAGA 58.737 33.333 24.77 15.36 36.39 3.27
2401 2995 8.797350 TTGCTCTTGATTTAAATCTGATCTGA 57.203 30.769 24.77 4.63 36.39 3.27
2402 2996 8.129840 CCTTGCTCTTGATTTAAATCTGATCTG 58.870 37.037 24.77 13.75 36.39 2.90
2403 2997 7.201803 GCCTTGCTCTTGATTTAAATCTGATCT 60.202 37.037 24.77 0.00 36.39 2.75
2404 2998 6.916932 GCCTTGCTCTTGATTTAAATCTGATC 59.083 38.462 24.77 18.28 36.39 2.92
2405 2999 6.183360 GGCCTTGCTCTTGATTTAAATCTGAT 60.183 38.462 24.77 0.00 36.39 2.90
2406 3000 5.126061 GGCCTTGCTCTTGATTTAAATCTGA 59.874 40.000 24.77 20.51 36.39 3.27
2407 3001 5.105635 TGGCCTTGCTCTTGATTTAAATCTG 60.106 40.000 24.77 18.09 36.39 2.90
2408 3002 5.018809 TGGCCTTGCTCTTGATTTAAATCT 58.981 37.500 24.77 0.00 36.39 2.40
2409 3003 5.329035 TGGCCTTGCTCTTGATTTAAATC 57.671 39.130 19.37 19.37 35.97 2.17
2410 3004 5.743636 TTGGCCTTGCTCTTGATTTAAAT 57.256 34.783 3.32 0.00 0.00 1.40
2411 3005 5.543507 TTTGGCCTTGCTCTTGATTTAAA 57.456 34.783 3.32 0.00 0.00 1.52
2413 3007 4.588528 AGTTTTGGCCTTGCTCTTGATTTA 59.411 37.500 3.32 0.00 0.00 1.40
2414 3008 3.389002 AGTTTTGGCCTTGCTCTTGATTT 59.611 39.130 3.32 0.00 0.00 2.17
2415 3009 2.967887 AGTTTTGGCCTTGCTCTTGATT 59.032 40.909 3.32 0.00 0.00 2.57
2416 3010 2.601905 AGTTTTGGCCTTGCTCTTGAT 58.398 42.857 3.32 0.00 0.00 2.57
2418 3012 2.101249 TCAAGTTTTGGCCTTGCTCTTG 59.899 45.455 3.32 12.27 39.30 3.02
2420 3014 1.683385 GTCAAGTTTTGGCCTTGCTCT 59.317 47.619 3.32 0.00 39.30 4.09
2421 3015 1.600413 CGTCAAGTTTTGGCCTTGCTC 60.600 52.381 3.32 0.00 39.30 4.26
2422 3016 0.385390 CGTCAAGTTTTGGCCTTGCT 59.615 50.000 3.32 0.00 39.30 3.91
2423 3017 0.597377 CCGTCAAGTTTTGGCCTTGC 60.597 55.000 3.32 0.00 39.30 4.01
2424 3018 0.597377 GCCGTCAAGTTTTGGCCTTG 60.597 55.000 3.32 0.00 41.70 3.61
2425 3019 1.739667 GCCGTCAAGTTTTGGCCTT 59.260 52.632 3.32 0.00 41.70 4.35
2426 3020 3.443588 GCCGTCAAGTTTTGGCCT 58.556 55.556 3.32 0.00 41.70 5.19
2430 3024 1.522258 GTTGCATGCCGTCAAGTTTTG 59.478 47.619 16.68 0.00 0.00 2.44
2431 3025 1.135915 TGTTGCATGCCGTCAAGTTTT 59.864 42.857 16.68 0.00 0.00 2.43
2432 3026 0.743688 TGTTGCATGCCGTCAAGTTT 59.256 45.000 16.68 0.00 0.00 2.66
2433 3027 0.743688 TTGTTGCATGCCGTCAAGTT 59.256 45.000 16.68 0.00 0.00 2.66
2434 3028 0.311790 CTTGTTGCATGCCGTCAAGT 59.688 50.000 24.97 0.00 33.27 3.16
2435 3029 1.005294 GCTTGTTGCATGCCGTCAAG 61.005 55.000 27.07 27.07 42.31 3.02
2437 3031 2.644418 GCTTGTTGCATGCCGTCA 59.356 55.556 16.68 8.80 42.31 4.35
2438 3032 2.502510 CGCTTGTTGCATGCCGTC 60.503 61.111 16.68 6.08 43.06 4.79
2439 3033 4.705519 GCGCTTGTTGCATGCCGT 62.706 61.111 16.68 0.00 43.06 5.68
2440 3034 3.902162 AAGCGCTTGTTGCATGCCG 62.902 57.895 24.40 11.35 43.06 5.69
2441 3035 2.048877 AAGCGCTTGTTGCATGCC 60.049 55.556 24.40 0.28 43.06 4.40
2442 3036 2.430942 CGAAGCGCTTGTTGCATGC 61.431 57.895 30.47 11.82 43.06 4.06
2443 3037 0.791983 CTCGAAGCGCTTGTTGCATG 60.792 55.000 30.47 8.07 43.06 4.06
2444 3038 1.499056 CTCGAAGCGCTTGTTGCAT 59.501 52.632 30.47 0.00 43.06 3.96
2445 3039 2.606961 CCTCGAAGCGCTTGTTGCA 61.607 57.895 30.47 5.15 43.06 4.08
2446 3040 2.174349 CCTCGAAGCGCTTGTTGC 59.826 61.111 30.47 12.25 38.57 4.17
2447 3041 1.901650 GACCCTCGAAGCGCTTGTTG 61.902 60.000 30.47 16.99 0.00 3.33
2448 3042 1.668151 GACCCTCGAAGCGCTTGTT 60.668 57.895 30.47 2.56 0.00 2.83
2449 3043 2.048127 GACCCTCGAAGCGCTTGT 60.048 61.111 30.47 18.93 0.00 3.16
2450 3044 2.048222 TGACCCTCGAAGCGCTTG 60.048 61.111 30.47 19.33 0.00 4.01
2451 3045 1.248785 TACTGACCCTCGAAGCGCTT 61.249 55.000 25.35 25.35 0.00 4.68
2453 3047 0.179108 ATTACTGACCCTCGAAGCGC 60.179 55.000 0.00 0.00 0.00 5.92
2454 3048 3.566523 GATATTACTGACCCTCGAAGCG 58.433 50.000 0.00 0.00 0.00 4.68
2455 3049 3.566523 CGATATTACTGACCCTCGAAGC 58.433 50.000 0.00 0.00 0.00 3.86
2456 3050 3.253677 AGCGATATTACTGACCCTCGAAG 59.746 47.826 0.00 0.00 0.00 3.79
2458 3052 2.552743 CAGCGATATTACTGACCCTCGA 59.447 50.000 0.74 0.00 35.90 4.04
2459 3053 2.552743 TCAGCGATATTACTGACCCTCG 59.447 50.000 4.90 0.00 37.99 4.63
2460 3054 4.585955 TTCAGCGATATTACTGACCCTC 57.414 45.455 7.85 0.00 42.42 4.30
2462 3056 4.272748 GGTTTTCAGCGATATTACTGACCC 59.727 45.833 7.85 5.78 42.42 4.46
2463 3057 4.873827 TGGTTTTCAGCGATATTACTGACC 59.126 41.667 7.85 7.76 42.42 4.02
2466 3060 6.422223 GTCATGGTTTTCAGCGATATTACTG 58.578 40.000 0.00 0.61 35.15 2.74
2467 3061 5.527582 GGTCATGGTTTTCAGCGATATTACT 59.472 40.000 0.00 0.00 0.00 2.24
2469 3063 4.509970 CGGTCATGGTTTTCAGCGATATTA 59.490 41.667 0.00 0.00 31.47 0.98
2470 3064 3.312421 CGGTCATGGTTTTCAGCGATATT 59.688 43.478 0.00 0.00 31.47 1.28
2471 3065 2.872245 CGGTCATGGTTTTCAGCGATAT 59.128 45.455 0.00 0.00 31.47 1.63
2472 3066 2.093921 TCGGTCATGGTTTTCAGCGATA 60.094 45.455 0.62 0.00 34.09 2.92
2474 3068 0.034198 TCGGTCATGGTTTTCAGCGA 59.966 50.000 0.62 0.62 36.49 4.93
2475 3069 1.062587 GATCGGTCATGGTTTTCAGCG 59.937 52.381 0.00 0.00 0.00 5.18
2476 3070 2.083774 TGATCGGTCATGGTTTTCAGC 58.916 47.619 0.00 0.00 0.00 4.26
2479 3073 3.751175 TCAACTGATCGGTCATGGTTTTC 59.249 43.478 7.86 0.00 32.98 2.29
2480 3074 3.502211 GTCAACTGATCGGTCATGGTTTT 59.498 43.478 7.86 0.00 32.98 2.43
2481 3075 3.074412 GTCAACTGATCGGTCATGGTTT 58.926 45.455 7.86 0.00 32.98 3.27
2482 3076 2.615493 GGTCAACTGATCGGTCATGGTT 60.615 50.000 7.86 0.00 32.98 3.67
2483 3077 1.066143 GGTCAACTGATCGGTCATGGT 60.066 52.381 7.86 0.00 32.98 3.55
2484 3078 1.656652 GGTCAACTGATCGGTCATGG 58.343 55.000 7.86 0.00 32.98 3.66
2485 3079 1.066215 TGGGTCAACTGATCGGTCATG 60.066 52.381 7.86 3.71 32.98 3.07
2486 3080 1.208052 CTGGGTCAACTGATCGGTCAT 59.792 52.381 7.86 0.00 32.98 3.06
2487 3081 0.608130 CTGGGTCAACTGATCGGTCA 59.392 55.000 7.86 0.00 0.00 4.02
2488 3082 0.608640 ACTGGGTCAACTGATCGGTC 59.391 55.000 7.86 0.00 0.00 4.79
2489 3083 0.608640 GACTGGGTCAACTGATCGGT 59.391 55.000 0.00 0.00 32.09 4.69
2490 3084 0.108138 GGACTGGGTCAACTGATCGG 60.108 60.000 0.00 0.00 33.68 4.18
2491 3085 0.898320 AGGACTGGGTCAACTGATCG 59.102 55.000 0.14 0.00 33.68 3.69
2494 3088 2.452116 CCAGGACTGGGTCAACTGA 58.548 57.895 10.55 0.00 46.81 3.41
2579 3488 4.148825 CTCAAGGTCGAGGGGCCG 62.149 72.222 0.00 0.00 0.00 6.13
2590 3499 1.978580 ACAGTGGGAACTACCTCAAGG 59.021 52.381 0.00 0.00 42.17 3.61
2593 3505 1.254026 CGACAGTGGGAACTACCTCA 58.746 55.000 0.00 0.00 38.98 3.86
2596 3508 3.509388 CACGACAGTGGGAACTACC 57.491 57.895 0.00 0.00 44.34 3.18
2606 3518 3.300765 GACCCCGACCACGACAGT 61.301 66.667 0.00 0.00 42.66 3.55
2624 3536 4.778415 CTCGTCCACCGTCGCAGG 62.778 72.222 0.00 0.00 37.94 4.85
2625 3537 4.778415 CCTCGTCCACCGTCGCAG 62.778 72.222 0.00 0.00 37.94 5.18
2627 3539 3.392595 CTACCTCGTCCACCGTCGC 62.393 68.421 0.00 0.00 37.94 5.19
2628 3540 2.789917 CTACCTCGTCCACCGTCG 59.210 66.667 0.00 0.00 37.94 5.12
2629 3541 2.488820 GCTACCTCGTCCACCGTC 59.511 66.667 0.00 0.00 37.94 4.79
2630 3542 3.066814 GGCTACCTCGTCCACCGT 61.067 66.667 0.00 0.00 37.94 4.83
2631 3543 4.189188 CGGCTACCTCGTCCACCG 62.189 72.222 0.00 0.00 38.13 4.94
2632 3544 3.066814 ACGGCTACCTCGTCCACC 61.067 66.667 0.00 0.00 35.87 4.61
2633 3545 2.181021 CACGGCTACCTCGTCCAC 59.819 66.667 0.00 0.00 38.94 4.02
2634 3546 3.066190 CCACGGCTACCTCGTCCA 61.066 66.667 0.00 0.00 38.94 4.02
2635 3547 3.061260 GACCACGGCTACCTCGTCC 62.061 68.421 0.00 0.00 38.94 4.79
2636 3548 2.488820 GACCACGGCTACCTCGTC 59.511 66.667 0.00 0.00 38.94 4.20
2637 3549 3.437795 CGACCACGGCTACCTCGT 61.438 66.667 0.00 0.00 41.93 4.18
2638 3550 3.437795 ACGACCACGGCTACCTCG 61.438 66.667 0.00 0.00 44.46 4.63
2639 3551 2.181021 CACGACCACGGCTACCTC 59.819 66.667 0.00 0.00 44.46 3.85
2640 3552 3.379445 CCACGACCACGGCTACCT 61.379 66.667 0.00 0.00 44.46 3.08
2641 3553 3.637926 GACCACGACCACGGCTACC 62.638 68.421 0.00 0.00 44.46 3.18
2642 3554 2.126189 GACCACGACCACGGCTAC 60.126 66.667 0.00 0.00 44.46 3.58
2643 3555 3.740397 CGACCACGACCACGGCTA 61.740 66.667 0.00 0.00 44.46 3.93
2662 3574 4.308458 TCCACCGTTGCAGGGACG 62.308 66.667 12.37 7.62 40.05 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.