>input_sequence_71949
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----------------------------------------------ACCCAAACAAG--CTCTTTCAGTAGTGGAGTGAC
CGAGCCCAAAATATGGCCTCCAAGGTGTTCGCAGTGCTGGCTATCGTTCTGGCCCTCACCCATGGGCATCTCCCTGCTGT
GATGGGCGAGACGACGCCATCAGATCGTCCAAAAGTCTTACCACGTCAAGATGCTGCTCCGGGTAAGACCTTCAAACTTG
AACACAGTCGTTCTTGCTATGTATTTTCAATCTCATTCTACAGTTCAGAGAGGGGAAAGAAACT----------------
----------------------------------------------TGTTCTTCATTTGCATATGTTATTTCCGTAGGCA
CCATAATTTGCAAACTTTTTATGGCAACACTGTACGTAAAATTGTCTGAGTTTTTCATAGCAAGCGATCCATTTGTTTCT
TTTTGCCCCACGCGTTGCTTTCATTTACTTGAAACAAAGGGACATTCAGCCTCTTCTTGT---ATACGTAGTATGAATAC
TTGGTTAGATTCTGACGATTGCTCC----AATTTTTGTTCATGATAAATTGCAGCAGCAGCTGGGAATGGTGCAGCTGCA
GCCCCTGGATTCACTGAGGAGAAGGGATGGTTCTTTCAGCGTCCGCTAGCAAGGCCGACCCCTCTTCCTCCTTCCTTAAA
GCTGTGAAGTGACTTGA--------------TATCTTCCTAGAGTTTGTATCTGCTCATTATAATGAAGCAGAGTACGCA
AAGCGAATAAG---------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G516000
TGCTAATGGGCAAACGTTCGCTGGCAAGGCACTTCCAGCAAACGCCCTCACAACCATTGGATCCAAATCACTTGGATGGC
ATTTAAAAACGATCACTGGCAATTATTTCTTATACATGGGAATTTTTCATTCCGTACATGGCATTTCCCTCAAAATGCAT
GGCAAATTTAGTTATGTTGGCATGGCGAGAGGGACGTTCGCTGGCAATTCGCCCCCAACAACGTTCGCTAGATAAACATG
TCCTAAATATAAGGTTCTTGGTTCTTACATTACGGGTCTAGTAAATTTGTATGGCCTTGGATCAGCGAGATCTTCCTCGG
TGAAAAAAACATCGTCCCCCGCTACCGTTTGGAGGGATGATGCATTCATCGGTTTCAGATCTCACCCGCAACCATTGGAT
ATGACTTTGTCATCATGTTCAAGGTGCATTCATCGGTTACGGATCCCACATAGCCTGGGTGCCTCAAGCGGCTTAAAAAA
TTTCAAGGAGGATTCTTGGTGGAGTTCTCATGGCAGCGCAGATGGTTTT------TTGCTACAATGACGTTCTCGGTGTG
GGTGATTCACGTCTACGACAACTCGCTGATGTTAGAGGTTGTTATTATTCTGTATTGCAAAGTCTGTTTTGCAAAACTGC
ATTTGTATTGTTCTTATCTGAATGAAGCAGTTTGTGTTTAAATAAAATAAAATGGTATGTCCTGTGGTCAACACGTTGAT
GGCCTATGCGACAAAAGTTTTATTACCTAAGCTAGCACCTCGCACATGCTAATTCATGTCGATGGCCGAACTCATGGCGG
CTGGGCAGTTTAGTTTGGCACCCTTTAACATATAGTGTGGACTGATTCCTCCTTTGTTGAATAGTCTACTTAATTTCCAG
CATTGCATGATGCTGAGAAGGCCTAGTGGACTCTACAAGATATATTTGCCTTGTTATGCGATGGCCGAACGTGAGCCTGT
CACATTGGCGTCTGTTATATAGCAAGCACCATCCCAGTTTCATTTCACCCAAACAAG--CTCTTTCAGTAGTGGAGTGAC
CGAGCCCAAAATATGGCCTCCAAGGTGTTCGCAGTGCTGGCTATCGTTCTGGCCCTCACCCATGGGCATCTCCCTGCTGT
GATGGGCGAGACGACGCCATCAGATCGTCCAAAAGTCTTACCACGTCAAGATGCTGCTCCGGGTAAGACCTTCAAACTTG
AACACAGTCGTTCTTGCTATGTATTTTCAATCTCATTCTACAGTTCAGAGAGGGGAAAGAAACT----------------
----------------------------------------------TGTTCTTCATTTGCATATGTTATTTCCGTAGGCA
CCATAATTTGCAAACTTTTTATGGCAACACTGTACGTAAAATTGTCTGAGTTTTTCATAGCAAGCGATCCATTTGTTTCT
TTTTGCCCCACGCGTTGCTTTCATTTACTTGAAACAAAGGGACATTCAGCCTCTTCTTGT---ATACGTAGTATGAATAC
TTGGTTAGATTCTGACGATTGCTCC----AATTTTTGTTCATGATAAATTGCAGCAGCAGCTGGGAATGGTGCAGCTGCA
GCCCCTGGATTCACTGAGGAGAAGGGATGGTTCTTTCAGCGTCCGCTAGCAAGGCCGACCCCTCTTCCTCCTTCCTTAAA
GCTGTGAAGTGACTTGA--------------TATCTTCCTAGAGTTTGTATCTGCTCATTATAATGAAGCAGAGTACGCA
AAGCGAATAAGTAGACCACTACTGGCTACAAAT-GGTTGAGTTCCCCGCTATGGTACCGTTATATGATGTTT---GCCTG
GACACACGGATGTGCTTGGGCAAAACAGTGTGCTAACTATATCAGATAATATCAGCCTCTCGGTTCTGAACAGCAAACTT
GCCGAAA-ATTTCTTTGTGCATATTTACCGTATTTATGTACTCGTTTCCCCCT-CTAGGACTAGGAAAAGAAAGAGCAAC
CCCAC----------------ACACCATTTTATCCGTTGACAAACAAGGGCTAACTGATACACCACCTAACCTTGGTACA
CACTACACAGTACACACACTGACGCCTTTTACTGTCCAACAAGGTGTAACAAACTAGAGAGAAAGATCGGCCAGAACAAA
TGATCCTGAAACCGCCATGTACAAGGAGTCTCCTCTGTTCTTCCTGTGTGCCTCATCAACCTTGCAATGGGGCAGAACAC
CGTCGTGATCTCCTTGTGCAACAGTGCAAGCCTGCAAAAAATTTCTTCAGTTCCG-------------------------
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------------------------------TTTTCTTCAGTTCTGTCAGGTTCAGAGTTGCTCCAGCATTGCTCTGCTTT
CTCCCTTTCTTCAGTTCCGTTTTCTTCAGTTCTGTCAGGTTCAGAGTT-----------GCTGTGCTTTATCCCTGCCTG
CTTCAGCTCGATTGGCCAAAGCATGGTCCCGTCTCTTCTCTTCTCCCAACGGCT--------------GTAACAGTCAGT
TATCTGCTGCAAAGTCAATTTGCGGGTGGAGATCTCAGATCAGATTTAAATCAAGAGCAAGGCCAAAACTTGACGGCATG
CAACAAGCGCTTCGAGGGTCAGTAATATCGCTGAAAACCATGACCGATCAGTTGACC-----------------------
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----------------------------------------------------CAGTCCTGGCCGAACAGCCGGCTGTTGG
GCCGGCGGTTCCTCCTAGGCCTCGGCTCAACGAGAGGCACATCCCCGCGGCCCCTCGAC---CTTGAGGTAGTTCCCACT
GTCGTGGTCGGGGTCCCTGCGACGGTGGACGAGGTAGCCGTGGTCGTGGTCGGCGTCCCTGCAACGGTGGA
>chr2B_1
TGCTAATGAGCGAACGTTCGCTCGGAAGGCAGTTTCAGCAAACTCCCTCACAACCATTGGATCCAGATCACATGGATGGC
AAAAAAATAGT-----TGGCAATTCTTTCCTATACATAGAAATTTCCCACTCCGTACATCGCATTTCCCTAAAAACGCAT
GTCAATTTTAGTCATTTTGGCATCACAAGTGGTGCATTCGCTGGCAATTCGCCCCAGCAAACGTTCGCTAGATAAATGCG
TCCTAAATATAAGGC-CTTGGTTCTCACATTATGGGCCTAGTAAATTTGTATGGCCTTGGATCATCGAGATCTCCATTGG
CGG-AAAAAAATCGTCGGCCGATAACGTTGGGAGGGATGATGCGTTCATCGGTTTCAGATTTCTCCCGCAACCGTTGGAA
AGTACTTTTTCATCATGTCCAAGGTGCATTCATCGGATTCAGATCCCAGATAGCCCGATTGGTTCAAGGGGCTTGAAAAA
GTTCAAGGAGGATTCTTGGTGGAGTTCTCATGGCGGCGCAGATGGTTTTTTTTTGTTGCTACAATGATGTTCTCGGTGTG
GGTCATTCTCGTCTACAACAACTCACCGATGTTAGAGGTTGTTATTTTTCTGTCTTGCAAAGTCTGTTTTGTAAAACTGC
ATTTGTATTGTTCTTATCTGAATGAAGCAGTTTATGTTTAAATAAAATAAAATTGTATGGCCTGTGGTCGACACGTTGAT
GGCCTATGCGCCAAAACTTTTATTGCGTAAGTTAGCACCTCGCACATTTTAATTCATGTCGATGGCCGAACTCATGTCGG
GTGGGCAGTTTGGTTTGGCACCCTTCATCACATAGTGTGGACCGATTCCTCCTTTGCTGAACAGTCTACTTAATTTCCAG
CATTGTATGATGCTGAGACGGCCTAGTGGACTCTACGAGATATATTTGCCTTCTAGCGCGATAGCCGAACGTGAGCCTGT
CACACTGGCGTCTTTTAAATAGCAAGCACCATCCCAGTTTCATTTCACCCAATCAAAGCCTCTTTCTGTAGTGGAGTGAG
CGAGCCCAAACCATGGCCTCCAAGGTGTTCGCAATGCTGGCTATCGTTCTTGTCCTCACCCATGGGCATCTCCCTGCTGT
GATGGGCCAGACGACACCGCCAGATCGTCCAAAATACTTCGCACGTCAAGATGCTGCGCCAGGTAAGACCTTCAAACTTG
AGCACAGTCGTTCTTGCTATGTATTTTCAATCTCATTCTATGGTTCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGTTCTTCATTTACATGTGTTATTTCTGTAGGTA
CCAAAATTTGCAATCTTTTTATAGCAACATTGAACGTCAAATTGTCTGAGTTTTTGATAGGAAGTGATTCATTTGTTTCT
TTCCACCCTACGCATTGCTTTCATTGCCTTGAAACTAAGGGACATCCAGCCTTTTCTTCTTGCATACTTAGTACGAATAC
TTGGTCATATGTTGACGATTGCTCCAATTAATTTTTGTTCATGACAAATTGCAGCAGTGGCTGGGAATGGTGCAGCTGCA
GGCTCTGGCTTCACTGAGGAGAAGGGATGGTTCTTTCAGCGTCCACTAGCAAGGCCGACACCTCTTCCTCCTTCCTTAAA
GCTGTGAAGTAACATGCAGTCCGCTGCAAATTATCCTGCTAGAGTTTGTATGTACTCATTGTAATGAAGCAGAGTACGCA
AGGCGAATAAGTAGTCCACTACTGGCTACAAATGGGTTGTGTTCCCCGCTATGGTATCGTTATATGATGTTTTCTGCCAG
GACACGCGGATGTGCGTGGGCAAAATAGTGTACTGAATATCTCAGATAATATCAGCGTCTCTGTTCTGAACAACAAACTT
ACAAAAATATTTCTTTGTGAATATTTACCATGTTTATGTACTCTTTTTTTCTTCCTAGGACTAGGAAAAGAAAGAACAAC
CCCACGGAAGTAATGCACAACACACCATTTTATCCGTTGACAAACAAGGGCTAACTGATACACCACCTAA-CTTGGTACA
CACTACACAGTACACACACTGATG-CTTTTACTGTCCAACAAGGTGTAGCAAACTAGAGCGAAAGATCGGCCAGATCAAA
TGGTCTTGGAACCAACTTGTACAAGGAGTCCCCACTGTTCTTCCTGTGTGCCTCATCAACCTTGCAATGGGGCGGAACAC
AGTCGTGTTCTCCTC--------GTGCAAGCCTGCAAAATTTTCCTCCTTCGTCCGGACTCCAGCAGCTCCCAGGGCTGT
TGTCTCGATGTCAGCTGGTCCGACAATACGGCTGCCCAACAAATCAGCTGGTCTGATAACATCGTCAGTGTTACAGACAT
ACTATACCATCACAGGAATCATTCACAGGGCTCTACTTGCTCAGTTCATCTCTACATCTCAGATCAGGAATTACAACAGC
GAAAAGAGGAGAGCGGTTCGCCCCTTCCGGGGTTATTATACAGTTCCACAATCCACCGGGTGCCTCTCTCAATCCCAGAG
GGCACCTGTTTATGCTACAGGCGTAGAGCTTGTTACACTTACATCTCGGCCCCACCTTAAGTCGTGATCCATGCATCCTT
CCCGGCATATCCGTATGGACGGCCCGTCAGGTCTGGCTGACTTGCGGGGTCCAGCATCTTCATCTTCTGCTCCTGCCTGG
GTGGCTTCGACTGAAGTGGTACCGGTGTTCTTTTCTTCAGTTTTGTGAGGTTCAGAGTTGCTCCAGCGTTGCTCTGCTTT
CTCCCGTACTTCAGTTCCGTTTTCTTCAGTTCTGTCCAGTTCAGAGTTGCTCCAGCGTTGCTCTGCCTTTTCTCTTCCTG
CTTCAG-TCGCTTGGCCAAAGCGTGATCCAGTCTCTTCTCCCAACAGCGTTGCATACGGGCTGTAACAGTCACTGTCAGT
GATCTGATGGAAAGTCAAAGGAGTTCTTACATACGAGTCATCTCCTCCTGTTATCCTAGTTACTGGTCGTGTTGTAAGCA
TGCATATGCTTCAAAAAGTGTGAGTAACTACTACTGCTGGCCTATGAAAGACTTACTATGAAGTGTCTGTTACTGGAGTA
CTATTCAAGCCTTCGTGACTGATATATCGTCAAAATGGGAATGGCTTGACGGAAACGATACTACTCATTTAGCATGCCAT
ATGCGATAAGTGTAGCAACCTTACAGTGTTAGCACGTAAAAATCCTGAATTCAAAATATGTTCAAATGAATTCAGGCGAC
AAAATATTGAAATTTCTGCCCGAGGGAGAAAGTACTTGATCTATATAAAGAAAAACTTAGTGCTCCAGTCGACCTACCAG
TAACGGATCATCATATTTTTGAGTGGCAGTAACGGATCATGAGTTGACCCAGCAGTCCTGGCCGAACAGACGGGTGTTGG
GCCGGCGGTTCCTCCTAGGCCTCGGCTCAACGAGAGGCACATCCCCGTGGCCCGTGCTACTGCTCGACGTCGTTCTCGCT
GCCGTGGTTGGGGT---------------------------------------------------------
>SNPs
--------S--S----------S-S------S--S--------S---------------------S-----S--------
-SSS---S-SSSSSSS--------S----S-------S-S-----SS--S---------S----------S----S----
-S---S------S--S-------SS-S--S--SS-S-------------------SSSS-----------------SSS-
--------------SS---------S------S---S---------------------------S--------S-S-S--
S-SS-----S------SS---S--S----S-------------S----------------S--S---------S-----S
-SS-----S---------S-----------------S-S-S-------S------S-SS--SS-----S-----S-----
S---------------------------------S--------------------------------S------------
---S----S-------S-------S-S-------------------S------S-----------------S--------
---------------------------------S-------------------S-----S---------S----------
----------S-----S-------S-S----S---------------SS---------------------------S---
S----------S-------------S-S--S-----------S-------------S----S------------------
-----S------------S-----------------S---------------S-SSS-----S-----------------
----S--------S---S----------------------------------S---S---------S------------S
----------SS---------------------S----------------S-S---------------------------
-------S-------S--SS--------------SS---SS----------------S--S-------------------
-S--------------------------------------SS----------S-SS-SSS-SSS----------------
----------------------------------------------------------S---S---------S-----S-
---S---------S--------S------S--S----S-----------------S----S---S---S-----------
--SSS---S----S-----------SS--------S---------S------S-----S--------S-----S------
-----S-S--SS--------------------------------S------------SS---------------------
-S-S----S-----------------------------------S--------------S--------------------
----------S--S--S------------------S-S-------------S-S------S-------------------
-S------------S------------------------S----------------S---------------------S-
-----S---------S---------S-----S--S-S---S---------------S----S----------S-------
S-SS---------------S---------S-S-----------S---SSS-S-----------------------S----
----------------------------------------------------------------------S---------
----------------------S-S-----------------------S----------S---------------S----
--S--S--S----SS-S-------------S--S---------------------------------------S------
S------S------SSSSSSSSS----------------SS--S--S-SSSSS-S-------------------------
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------------------------------------------S---S--------------------S------------
-----S-S----------------------------SS------------------------S---S--S--S--S----
------S---S-----------S--S---S----------SSSS-SSSSSS--S----------------S--S------
S-----S--S--------SSSSSSSS-SSSSSS-SSSSSSSSSSS-SSSS-S-SSSSSSSSS-SSSSSS-SSSSSSSSSS
SSSSS-SSSS-SSS-SS--SS-SSSS-SSS--SSSSSSSSSSSSS--SSSSS-S--S-----------------------
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---------------------------------------------------------------------S---S------
-----------------------------------------------S-----S-SSSS-----S--S--S----S-S--
-S------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_587
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-------CACGTCTACGACAACTCGCT-----------------------------------------------------
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>reverse_3068
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---------------------------TCGCTGAAAACCATGACCGA---------------------------------
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