Multiple sequence alignment - TraesCS2A01G511100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G511100 chr2A 100.000 3231 0 0 1 3231 735823628 735820398 0.000000e+00 5967
1 TraesCS2A01G511100 chr2A 83.940 604 84 8 348 943 257786414 257785816 1.680000e-157 566
2 TraesCS2A01G511100 chr2A 96.166 313 12 0 1 313 735849468 735849156 2.220000e-141 512
3 TraesCS2A01G511100 chr2A 84.158 303 42 6 329 628 54124752 54124453 4.080000e-74 289
4 TraesCS2A01G511100 chr2D 93.354 2934 134 29 312 3224 603661460 603658567 0.000000e+00 4281
5 TraesCS2A01G511100 chr2D 86.971 614 74 4 333 945 611164951 611164343 0.000000e+00 686
6 TraesCS2A01G511100 chr2B 91.024 635 46 7 1527 2154 734216477 734215847 0.000000e+00 846
7 TraesCS2A01G511100 chr2B 82.732 637 88 17 329 953 626305887 626306513 6.090000e-152 547
8 TraesCS2A01G511100 chr2B 92.798 361 16 2 1182 1532 734221480 734221120 6.180000e-142 514
9 TraesCS2A01G511100 chr4A 88.387 620 69 3 329 945 690100881 690100262 0.000000e+00 743
10 TraesCS2A01G511100 chr4A 85.089 617 86 5 330 943 674361784 674361171 2.740000e-175 625
11 TraesCS2A01G511100 chr4A 95.527 313 14 0 1 313 222529806 222530118 4.810000e-138 501
12 TraesCS2A01G511100 chr7B 85.137 619 84 5 329 941 384765005 384764389 7.610000e-176 627
13 TraesCS2A01G511100 chr1D 86.973 522 65 3 329 848 234657584 234658104 4.640000e-163 584
14 TraesCS2A01G511100 chr7A 96.805 313 8 2 1 312 427837204 427836893 3.690000e-144 521
15 TraesCS2A01G511100 chr7A 95.541 314 12 1 1 312 382317493 382317180 4.810000e-138 501
16 TraesCS2A01G511100 chr7A 95.527 313 14 0 1 313 714843941 714843629 4.810000e-138 501
17 TraesCS2A01G511100 chr5A 82.550 596 92 8 353 943 83024998 83025586 6.180000e-142 514
18 TraesCS2A01G511100 chr5A 95.820 311 13 0 1 311 641368289 641368599 1.340000e-138 503
19 TraesCS2A01G511100 chr3A 78.302 848 138 26 1221 2038 693938749 693937918 3.720000e-139 505
20 TraesCS2A01G511100 chr3A 95.527 313 14 0 1 313 425916668 425916356 4.810000e-138 501
21 TraesCS2A01G511100 chr3A 79.447 579 104 12 1453 2028 694092793 694092227 2.340000e-106 396
22 TraesCS2A01G511100 chr3A 81.659 458 75 4 1571 2028 693978853 693978405 3.940000e-99 372
23 TraesCS2A01G511100 chr6A 95.556 315 12 1 1 313 542122251 542122565 1.340000e-138 503
24 TraesCS2A01G511100 chr1A 95.541 314 12 1 1 312 83782420 83782733 4.810000e-138 501
25 TraesCS2A01G511100 chr3D 79.698 596 105 14 1453 2044 558218148 558217565 1.790000e-112 416
26 TraesCS2A01G511100 chr3D 78.282 617 102 16 1221 1817 558015720 558015116 5.090000e-98 368
27 TraesCS2A01G511100 chr3D 81.223 458 77 4 1571 2028 558021186 558020738 8.520000e-96 361
28 TraesCS2A01G511100 chr3B 79.530 596 106 14 1453 2044 740885688 740885105 8.340000e-111 411
29 TraesCS2A01G511100 chr3B 81.287 171 21 6 2750 2919 495277048 495277208 9.410000e-26 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G511100 chr2A 735820398 735823628 3230 True 5967 5967 100.000 1 3231 1 chr2A.!!$R3 3230
1 TraesCS2A01G511100 chr2A 257785816 257786414 598 True 566 566 83.940 348 943 1 chr2A.!!$R2 595
2 TraesCS2A01G511100 chr2D 603658567 603661460 2893 True 4281 4281 93.354 312 3224 1 chr2D.!!$R1 2912
3 TraesCS2A01G511100 chr2D 611164343 611164951 608 True 686 686 86.971 333 945 1 chr2D.!!$R2 612
4 TraesCS2A01G511100 chr2B 734215847 734216477 630 True 846 846 91.024 1527 2154 1 chr2B.!!$R1 627
5 TraesCS2A01G511100 chr2B 626305887 626306513 626 False 547 547 82.732 329 953 1 chr2B.!!$F1 624
6 TraesCS2A01G511100 chr4A 690100262 690100881 619 True 743 743 88.387 329 945 1 chr4A.!!$R2 616
7 TraesCS2A01G511100 chr4A 674361171 674361784 613 True 625 625 85.089 330 943 1 chr4A.!!$R1 613
8 TraesCS2A01G511100 chr7B 384764389 384765005 616 True 627 627 85.137 329 941 1 chr7B.!!$R1 612
9 TraesCS2A01G511100 chr1D 234657584 234658104 520 False 584 584 86.973 329 848 1 chr1D.!!$F1 519
10 TraesCS2A01G511100 chr5A 83024998 83025586 588 False 514 514 82.550 353 943 1 chr5A.!!$F1 590
11 TraesCS2A01G511100 chr3A 693937918 693938749 831 True 505 505 78.302 1221 2038 1 chr3A.!!$R2 817
12 TraesCS2A01G511100 chr3A 694092227 694092793 566 True 396 396 79.447 1453 2028 1 chr3A.!!$R4 575
13 TraesCS2A01G511100 chr3D 558217565 558218148 583 True 416 416 79.698 1453 2044 1 chr3D.!!$R3 591
14 TraesCS2A01G511100 chr3D 558015116 558015720 604 True 368 368 78.282 1221 1817 1 chr3D.!!$R1 596
15 TraesCS2A01G511100 chr3B 740885105 740885688 583 True 411 411 79.530 1453 2044 1 chr3B.!!$R1 591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
661 688 0.0297 TCGTCGCTCGACTTTGTTCA 59.97 50.0 18.51 0.0 44.01 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2549 2631 0.963962 TTGGTGAGGACAGGACGTAC 59.036 55.0 0.0 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.123854 TATGAGCCGGCCGAGACT 60.124 61.111 30.73 21.12 0.00 3.24
18 19 2.194212 TATGAGCCGGCCGAGACTC 61.194 63.158 30.73 27.89 0.00 3.36
19 20 2.626255 TATGAGCCGGCCGAGACTCT 62.626 60.000 30.73 19.46 0.00 3.24
20 21 4.200283 GAGCCGGCCGAGACTCTG 62.200 72.222 30.73 9.14 0.00 3.35
22 23 3.138798 GCCGGCCGAGACTCTGTA 61.139 66.667 30.73 0.00 0.00 2.74
23 24 3.111939 CCGGCCGAGACTCTGTAG 58.888 66.667 30.73 0.44 0.00 2.74
24 25 2.482333 CCGGCCGAGACTCTGTAGG 61.482 68.421 30.73 0.00 0.00 3.18
25 26 2.809010 GGCCGAGACTCTGTAGGC 59.191 66.667 9.86 9.86 46.51 3.93
26 27 2.809010 GCCGAGACTCTGTAGGCC 59.191 66.667 7.65 0.00 41.81 5.19
27 28 2.052690 GCCGAGACTCTGTAGGCCA 61.053 63.158 5.01 0.00 41.81 5.36
28 29 1.810532 CCGAGACTCTGTAGGCCAC 59.189 63.158 5.01 1.31 0.00 5.01
29 30 1.668101 CCGAGACTCTGTAGGCCACC 61.668 65.000 5.01 0.00 0.00 4.61
30 31 0.965866 CGAGACTCTGTAGGCCACCA 60.966 60.000 5.01 0.00 0.00 4.17
31 32 0.820871 GAGACTCTGTAGGCCACCAG 59.179 60.000 5.01 10.68 0.00 4.00
32 33 0.616111 AGACTCTGTAGGCCACCAGG 60.616 60.000 18.44 12.73 38.23 4.45
43 44 4.619227 CACCAGGCGTCAACCCGT 62.619 66.667 0.00 0.00 0.00 5.28
44 45 4.619227 ACCAGGCGTCAACCCGTG 62.619 66.667 0.00 0.00 0.00 4.94
45 46 4.619227 CCAGGCGTCAACCCGTGT 62.619 66.667 0.00 0.00 0.00 4.49
46 47 2.340809 CAGGCGTCAACCCGTGTA 59.659 61.111 0.00 0.00 0.00 2.90
47 48 1.079405 CAGGCGTCAACCCGTGTAT 60.079 57.895 0.00 0.00 0.00 2.29
48 49 0.173935 CAGGCGTCAACCCGTGTATA 59.826 55.000 0.00 0.00 0.00 1.47
49 50 1.117150 AGGCGTCAACCCGTGTATAT 58.883 50.000 0.00 0.00 0.00 0.86
50 51 2.034939 CAGGCGTCAACCCGTGTATATA 59.965 50.000 0.00 0.00 0.00 0.86
51 52 2.694628 AGGCGTCAACCCGTGTATATAA 59.305 45.455 0.00 0.00 0.00 0.98
52 53 3.054878 GGCGTCAACCCGTGTATATAAG 58.945 50.000 0.00 0.00 0.00 1.73
53 54 3.054878 GCGTCAACCCGTGTATATAAGG 58.945 50.000 0.00 0.00 0.00 2.69
59 60 2.517959 CCCGTGTATATAAGGGGACGA 58.482 52.381 11.93 0.00 44.09 4.20
60 61 2.229784 CCCGTGTATATAAGGGGACGAC 59.770 54.545 11.93 0.00 44.09 4.34
61 62 2.229784 CCGTGTATATAAGGGGACGACC 59.770 54.545 0.00 0.00 39.11 4.79
74 75 4.376176 CGACCCGGTGGCGGTTTA 62.376 66.667 10.04 0.00 32.27 2.01
75 76 2.435410 GACCCGGTGGCGGTTTAG 60.435 66.667 0.00 0.00 32.27 1.85
76 77 3.963687 GACCCGGTGGCGGTTTAGG 62.964 68.421 0.00 0.00 32.27 2.69
77 78 4.789123 CCCGGTGGCGGTTTAGGG 62.789 72.222 0.00 0.00 0.00 3.53
79 80 4.708386 CGGTGGCGGTTTAGGGCA 62.708 66.667 0.00 0.00 37.66 5.36
80 81 2.282603 GGTGGCGGTTTAGGGCAA 60.283 61.111 0.00 0.00 41.93 4.52
81 82 2.340328 GGTGGCGGTTTAGGGCAAG 61.340 63.158 0.00 0.00 41.93 4.01
82 83 1.302993 GTGGCGGTTTAGGGCAAGA 60.303 57.895 0.00 0.00 41.93 3.02
83 84 0.891904 GTGGCGGTTTAGGGCAAGAA 60.892 55.000 0.00 0.00 41.93 2.52
84 85 0.178987 TGGCGGTTTAGGGCAAGAAA 60.179 50.000 0.00 0.00 36.99 2.52
85 86 0.242825 GGCGGTTTAGGGCAAGAAAC 59.757 55.000 0.00 0.00 35.28 2.78
86 87 0.955905 GCGGTTTAGGGCAAGAAACA 59.044 50.000 9.42 0.00 37.30 2.83
87 88 1.338655 GCGGTTTAGGGCAAGAAACAA 59.661 47.619 9.42 0.00 37.30 2.83
88 89 2.860971 GCGGTTTAGGGCAAGAAACAAC 60.861 50.000 9.42 0.00 37.30 3.32
89 90 2.287970 CGGTTTAGGGCAAGAAACAACC 60.288 50.000 9.42 0.00 37.30 3.77
90 91 2.696187 GGTTTAGGGCAAGAAACAACCA 59.304 45.455 9.42 0.00 37.30 3.67
91 92 3.133183 GGTTTAGGGCAAGAAACAACCAA 59.867 43.478 9.42 0.00 37.30 3.67
92 93 4.368315 GTTTAGGGCAAGAAACAACCAAG 58.632 43.478 4.00 0.00 35.93 3.61
93 94 2.159179 AGGGCAAGAAACAACCAAGT 57.841 45.000 0.00 0.00 0.00 3.16
94 95 2.031870 AGGGCAAGAAACAACCAAGTC 58.968 47.619 0.00 0.00 0.00 3.01
95 96 1.269051 GGGCAAGAAACAACCAAGTCG 60.269 52.381 0.00 0.00 0.00 4.18
96 97 1.673920 GGCAAGAAACAACCAAGTCGA 59.326 47.619 0.00 0.00 0.00 4.20
97 98 2.293399 GGCAAGAAACAACCAAGTCGAT 59.707 45.455 0.00 0.00 0.00 3.59
98 99 3.500680 GGCAAGAAACAACCAAGTCGATA 59.499 43.478 0.00 0.00 0.00 2.92
99 100 4.023536 GGCAAGAAACAACCAAGTCGATAA 60.024 41.667 0.00 0.00 0.00 1.75
100 101 4.909880 GCAAGAAACAACCAAGTCGATAAC 59.090 41.667 0.00 0.00 0.00 1.89
101 102 5.449304 CAAGAAACAACCAAGTCGATAACC 58.551 41.667 0.00 0.00 0.00 2.85
102 103 4.710324 AGAAACAACCAAGTCGATAACCA 58.290 39.130 0.00 0.00 0.00 3.67
103 104 5.127491 AGAAACAACCAAGTCGATAACCAA 58.873 37.500 0.00 0.00 0.00 3.67
104 105 5.238650 AGAAACAACCAAGTCGATAACCAAG 59.761 40.000 0.00 0.00 0.00 3.61
105 106 2.812011 ACAACCAAGTCGATAACCAAGC 59.188 45.455 0.00 0.00 0.00 4.01
106 107 2.109425 ACCAAGTCGATAACCAAGCC 57.891 50.000 0.00 0.00 0.00 4.35
107 108 1.006832 CCAAGTCGATAACCAAGCCG 58.993 55.000 0.00 0.00 0.00 5.52
108 109 1.006832 CAAGTCGATAACCAAGCCGG 58.993 55.000 0.00 0.00 42.50 6.13
109 110 0.743345 AAGTCGATAACCAAGCCGGC 60.743 55.000 21.89 21.89 39.03 6.13
110 111 2.202824 TCGATAACCAAGCCGGCG 60.203 61.111 23.20 9.91 39.03 6.46
111 112 2.202824 CGATAACCAAGCCGGCGA 60.203 61.111 23.20 3.55 39.03 5.54
112 113 2.237751 CGATAACCAAGCCGGCGAG 61.238 63.158 23.20 17.66 39.03 5.03
113 114 1.153429 GATAACCAAGCCGGCGAGT 60.153 57.895 23.20 17.12 39.03 4.18
114 115 0.743345 GATAACCAAGCCGGCGAGTT 60.743 55.000 27.05 27.05 39.03 3.01
115 116 0.538118 ATAACCAAGCCGGCGAGTTA 59.462 50.000 28.82 28.82 39.03 2.24
116 117 0.321021 TAACCAAGCCGGCGAGTTAA 59.679 50.000 26.38 15.45 39.03 2.01
117 118 1.232621 AACCAAGCCGGCGAGTTAAC 61.233 55.000 24.26 0.00 39.03 2.01
118 119 2.396157 CCAAGCCGGCGAGTTAACC 61.396 63.158 23.20 0.00 0.00 2.85
119 120 2.046604 AAGCCGGCGAGTTAACCC 60.047 61.111 23.20 0.00 0.00 4.11
120 121 2.590114 AAGCCGGCGAGTTAACCCT 61.590 57.895 23.20 0.00 0.00 4.34
121 122 2.510918 GCCGGCGAGTTAACCCTC 60.511 66.667 12.58 0.00 0.00 4.30
122 123 3.015312 GCCGGCGAGTTAACCCTCT 62.015 63.158 12.58 0.00 0.00 3.69
123 124 1.595357 CCGGCGAGTTAACCCTCTT 59.405 57.895 9.30 0.00 0.00 2.85
124 125 0.739813 CCGGCGAGTTAACCCTCTTG 60.740 60.000 9.30 0.00 0.00 3.02
125 126 0.739813 CGGCGAGTTAACCCTCTTGG 60.740 60.000 0.00 0.00 41.37 3.61
126 127 0.611714 GGCGAGTTAACCCTCTTGGA 59.388 55.000 0.88 0.00 38.00 3.53
127 128 1.405661 GGCGAGTTAACCCTCTTGGAG 60.406 57.143 0.88 0.00 38.00 3.86
128 129 1.549170 GCGAGTTAACCCTCTTGGAGA 59.451 52.381 0.88 0.00 38.00 3.71
129 130 2.168728 GCGAGTTAACCCTCTTGGAGAT 59.831 50.000 0.88 0.00 38.00 2.75
130 131 3.738590 GCGAGTTAACCCTCTTGGAGATC 60.739 52.174 0.88 0.00 38.00 2.75
131 132 3.489398 CGAGTTAACCCTCTTGGAGATCG 60.489 52.174 0.88 0.00 38.00 3.69
132 133 3.700038 GAGTTAACCCTCTTGGAGATCGA 59.300 47.826 0.88 0.00 38.00 3.59
133 134 4.094476 AGTTAACCCTCTTGGAGATCGAA 58.906 43.478 0.88 0.00 38.00 3.71
134 135 4.530946 AGTTAACCCTCTTGGAGATCGAAA 59.469 41.667 0.88 0.00 38.00 3.46
135 136 3.336138 AACCCTCTTGGAGATCGAAAC 57.664 47.619 0.00 0.00 38.00 2.78
136 137 1.555533 ACCCTCTTGGAGATCGAAACC 59.444 52.381 0.00 0.00 38.00 3.27
137 138 1.834263 CCCTCTTGGAGATCGAAACCT 59.166 52.381 0.00 0.00 35.39 3.50
138 139 2.159028 CCCTCTTGGAGATCGAAACCTC 60.159 54.545 0.00 0.00 35.39 3.85
139 140 2.497675 CCTCTTGGAGATCGAAACCTCA 59.502 50.000 12.72 0.00 34.57 3.86
140 141 3.430098 CCTCTTGGAGATCGAAACCTCAG 60.430 52.174 12.72 7.04 34.57 3.35
141 142 2.093973 TCTTGGAGATCGAAACCTCAGC 60.094 50.000 12.72 0.00 0.00 4.26
142 143 1.266178 TGGAGATCGAAACCTCAGCA 58.734 50.000 12.72 2.91 0.00 4.41
143 144 1.623311 TGGAGATCGAAACCTCAGCAA 59.377 47.619 12.72 0.00 0.00 3.91
144 145 2.237143 TGGAGATCGAAACCTCAGCAAT 59.763 45.455 12.72 0.00 0.00 3.56
145 146 3.450817 TGGAGATCGAAACCTCAGCAATA 59.549 43.478 12.72 0.00 0.00 1.90
146 147 3.804873 GGAGATCGAAACCTCAGCAATAC 59.195 47.826 12.72 0.00 0.00 1.89
147 148 3.798202 AGATCGAAACCTCAGCAATACC 58.202 45.455 0.00 0.00 0.00 2.73
148 149 3.197766 AGATCGAAACCTCAGCAATACCA 59.802 43.478 0.00 0.00 0.00 3.25
149 150 3.410631 TCGAAACCTCAGCAATACCAA 57.589 42.857 0.00 0.00 0.00 3.67
150 151 3.950397 TCGAAACCTCAGCAATACCAAT 58.050 40.909 0.00 0.00 0.00 3.16
151 152 3.938963 TCGAAACCTCAGCAATACCAATC 59.061 43.478 0.00 0.00 0.00 2.67
152 153 3.065371 CGAAACCTCAGCAATACCAATCC 59.935 47.826 0.00 0.00 0.00 3.01
153 154 2.736670 ACCTCAGCAATACCAATCCC 57.263 50.000 0.00 0.00 0.00 3.85
154 155 1.922447 ACCTCAGCAATACCAATCCCA 59.078 47.619 0.00 0.00 0.00 4.37
155 156 2.311542 ACCTCAGCAATACCAATCCCAA 59.688 45.455 0.00 0.00 0.00 4.12
156 157 2.689983 CCTCAGCAATACCAATCCCAAC 59.310 50.000 0.00 0.00 0.00 3.77
157 158 3.624777 CTCAGCAATACCAATCCCAACT 58.375 45.455 0.00 0.00 0.00 3.16
158 159 4.385199 CCTCAGCAATACCAATCCCAACTA 60.385 45.833 0.00 0.00 0.00 2.24
159 160 4.780815 TCAGCAATACCAATCCCAACTAG 58.219 43.478 0.00 0.00 0.00 2.57
160 161 4.473196 TCAGCAATACCAATCCCAACTAGA 59.527 41.667 0.00 0.00 0.00 2.43
161 162 4.576463 CAGCAATACCAATCCCAACTAGAC 59.424 45.833 0.00 0.00 0.00 2.59
162 163 3.560068 GCAATACCAATCCCAACTAGACG 59.440 47.826 0.00 0.00 0.00 4.18
163 164 4.766375 CAATACCAATCCCAACTAGACGT 58.234 43.478 0.00 0.00 0.00 4.34
164 165 5.682990 GCAATACCAATCCCAACTAGACGTA 60.683 44.000 0.00 0.00 0.00 3.57
165 166 5.786264 ATACCAATCCCAACTAGACGTAG 57.214 43.478 0.00 0.00 0.00 3.51
166 167 2.764572 ACCAATCCCAACTAGACGTAGG 59.235 50.000 0.00 0.00 0.00 3.18
167 168 2.483188 CCAATCCCAACTAGACGTAGGC 60.483 54.545 0.00 0.00 0.00 3.93
168 169 2.431057 CAATCCCAACTAGACGTAGGCT 59.569 50.000 0.00 0.00 0.00 4.58
169 170 2.226962 TCCCAACTAGACGTAGGCTT 57.773 50.000 0.00 0.00 0.00 4.35
170 171 2.532843 TCCCAACTAGACGTAGGCTTT 58.467 47.619 0.00 0.00 0.00 3.51
171 172 2.901839 TCCCAACTAGACGTAGGCTTTT 59.098 45.455 0.00 0.00 0.00 2.27
172 173 4.088634 TCCCAACTAGACGTAGGCTTTTA 58.911 43.478 0.00 0.00 0.00 1.52
173 174 4.082026 TCCCAACTAGACGTAGGCTTTTAC 60.082 45.833 0.00 0.00 0.00 2.01
174 175 4.179298 CCAACTAGACGTAGGCTTTTACC 58.821 47.826 0.00 0.00 0.00 2.85
175 176 4.081807 CCAACTAGACGTAGGCTTTTACCT 60.082 45.833 0.00 0.00 44.31 3.08
176 177 5.476614 CAACTAGACGTAGGCTTTTACCTT 58.523 41.667 0.00 0.00 41.50 3.50
177 178 5.321959 ACTAGACGTAGGCTTTTACCTTC 57.678 43.478 0.00 0.00 41.50 3.46
178 179 4.768968 ACTAGACGTAGGCTTTTACCTTCA 59.231 41.667 0.00 0.00 41.50 3.02
179 180 4.820894 AGACGTAGGCTTTTACCTTCAT 57.179 40.909 0.00 0.00 41.50 2.57
180 181 4.756502 AGACGTAGGCTTTTACCTTCATC 58.243 43.478 0.00 0.00 41.50 2.92
181 182 3.518590 ACGTAGGCTTTTACCTTCATCG 58.481 45.455 0.00 0.00 41.50 3.84
182 183 3.056322 ACGTAGGCTTTTACCTTCATCGT 60.056 43.478 0.00 0.00 41.50 3.73
183 184 4.158394 ACGTAGGCTTTTACCTTCATCGTA 59.842 41.667 0.00 0.00 41.50 3.43
184 185 5.104374 CGTAGGCTTTTACCTTCATCGTAA 58.896 41.667 0.00 0.00 41.50 3.18
185 186 5.231568 CGTAGGCTTTTACCTTCATCGTAAG 59.768 44.000 0.00 0.00 41.50 2.34
190 191 4.878878 CCTTCATCGTAAGGGGCC 57.121 61.111 0.00 0.00 42.08 5.80
191 192 1.912220 CCTTCATCGTAAGGGGCCA 59.088 57.895 4.39 0.00 42.08 5.36
192 193 0.254747 CCTTCATCGTAAGGGGCCAA 59.745 55.000 4.39 0.00 42.08 4.52
193 194 1.340600 CCTTCATCGTAAGGGGCCAAA 60.341 52.381 4.39 0.00 42.08 3.28
194 195 1.743394 CTTCATCGTAAGGGGCCAAAC 59.257 52.381 4.39 0.00 38.47 2.93
195 196 0.988832 TCATCGTAAGGGGCCAAACT 59.011 50.000 4.39 0.00 38.47 2.66
196 197 2.189676 TCATCGTAAGGGGCCAAACTA 58.810 47.619 4.39 0.00 38.47 2.24
197 198 2.169769 TCATCGTAAGGGGCCAAACTAG 59.830 50.000 4.39 0.00 38.47 2.57
198 199 1.648116 TCGTAAGGGGCCAAACTAGT 58.352 50.000 4.39 0.00 38.47 2.57
199 200 2.818921 TCGTAAGGGGCCAAACTAGTA 58.181 47.619 4.39 0.00 38.47 1.82
200 201 3.377573 TCGTAAGGGGCCAAACTAGTAT 58.622 45.455 4.39 0.00 38.47 2.12
201 202 4.545678 TCGTAAGGGGCCAAACTAGTATA 58.454 43.478 4.39 0.00 38.47 1.47
202 203 4.961730 TCGTAAGGGGCCAAACTAGTATAA 59.038 41.667 4.39 0.00 38.47 0.98
203 204 5.424895 TCGTAAGGGGCCAAACTAGTATAAA 59.575 40.000 4.39 0.00 38.47 1.40
204 205 6.070309 TCGTAAGGGGCCAAACTAGTATAAAA 60.070 38.462 4.39 0.00 38.47 1.52
205 206 6.598850 CGTAAGGGGCCAAACTAGTATAAAAA 59.401 38.462 4.39 0.00 0.00 1.94
206 207 6.845758 AAGGGGCCAAACTAGTATAAAAAC 57.154 37.500 4.39 0.00 0.00 2.43
207 208 6.148735 AGGGGCCAAACTAGTATAAAAACT 57.851 37.500 4.39 0.00 0.00 2.66
208 209 6.185511 AGGGGCCAAACTAGTATAAAAACTC 58.814 40.000 4.39 0.00 0.00 3.01
209 210 6.011893 AGGGGCCAAACTAGTATAAAAACTCT 60.012 38.462 4.39 0.00 0.00 3.24
210 211 6.318144 GGGGCCAAACTAGTATAAAAACTCTC 59.682 42.308 4.39 0.00 0.00 3.20
211 212 7.110810 GGGCCAAACTAGTATAAAAACTCTCT 58.889 38.462 4.39 0.00 0.00 3.10
212 213 7.280428 GGGCCAAACTAGTATAAAAACTCTCTC 59.720 40.741 4.39 0.00 0.00 3.20
213 214 7.010275 GGCCAAACTAGTATAAAAACTCTCTCG 59.990 40.741 0.00 0.00 0.00 4.04
214 215 7.544915 GCCAAACTAGTATAAAAACTCTCTCGT 59.455 37.037 0.00 0.00 0.00 4.18
215 216 8.861101 CCAAACTAGTATAAAAACTCTCTCGTG 58.139 37.037 0.00 0.00 0.00 4.35
216 217 9.408069 CAAACTAGTATAAAAACTCTCTCGTGT 57.592 33.333 0.00 0.00 0.00 4.49
217 218 9.623350 AAACTAGTATAAAAACTCTCTCGTGTC 57.377 33.333 0.00 0.00 0.00 3.67
218 219 7.760437 ACTAGTATAAAAACTCTCTCGTGTCC 58.240 38.462 0.00 0.00 0.00 4.02
219 220 6.837471 AGTATAAAAACTCTCTCGTGTCCT 57.163 37.500 0.00 0.00 0.00 3.85
220 221 7.229581 AGTATAAAAACTCTCTCGTGTCCTT 57.770 36.000 0.00 0.00 0.00 3.36
221 222 7.668492 AGTATAAAAACTCTCTCGTGTCCTTT 58.332 34.615 0.00 0.00 0.00 3.11
222 223 6.787085 ATAAAAACTCTCTCGTGTCCTTTG 57.213 37.500 0.00 0.00 0.00 2.77
223 224 3.821421 AAACTCTCTCGTGTCCTTTGT 57.179 42.857 0.00 0.00 0.00 2.83
224 225 2.802787 ACTCTCTCGTGTCCTTTGTG 57.197 50.000 0.00 0.00 0.00 3.33
225 226 1.269831 ACTCTCTCGTGTCCTTTGTGC 60.270 52.381 0.00 0.00 0.00 4.57
226 227 0.033504 TCTCTCGTGTCCTTTGTGCC 59.966 55.000 0.00 0.00 0.00 5.01
227 228 1.284982 CTCTCGTGTCCTTTGTGCCG 61.285 60.000 0.00 0.00 0.00 5.69
228 229 1.300620 CTCGTGTCCTTTGTGCCGA 60.301 57.895 0.00 0.00 0.00 5.54
229 230 0.670546 CTCGTGTCCTTTGTGCCGAT 60.671 55.000 0.00 0.00 0.00 4.18
230 231 0.250124 TCGTGTCCTTTGTGCCGATT 60.250 50.000 0.00 0.00 0.00 3.34
231 232 1.001068 TCGTGTCCTTTGTGCCGATTA 59.999 47.619 0.00 0.00 0.00 1.75
232 233 1.801771 CGTGTCCTTTGTGCCGATTAA 59.198 47.619 0.00 0.00 0.00 1.40
233 234 2.412325 CGTGTCCTTTGTGCCGATTAAC 60.412 50.000 0.00 0.00 0.00 2.01
234 235 2.095415 GTGTCCTTTGTGCCGATTAACC 60.095 50.000 0.00 0.00 0.00 2.85
235 236 1.471287 GTCCTTTGTGCCGATTAACCC 59.529 52.381 0.00 0.00 0.00 4.11
236 237 0.815095 CCTTTGTGCCGATTAACCCC 59.185 55.000 0.00 0.00 0.00 4.95
237 238 1.615919 CCTTTGTGCCGATTAACCCCT 60.616 52.381 0.00 0.00 0.00 4.79
238 239 2.167662 CTTTGTGCCGATTAACCCCTT 58.832 47.619 0.00 0.00 0.00 3.95
239 240 2.296073 TTGTGCCGATTAACCCCTTT 57.704 45.000 0.00 0.00 0.00 3.11
240 241 3.436577 TTGTGCCGATTAACCCCTTTA 57.563 42.857 0.00 0.00 0.00 1.85
241 242 3.436577 TGTGCCGATTAACCCCTTTAA 57.563 42.857 0.00 0.00 34.08 1.52
242 243 3.083293 TGTGCCGATTAACCCCTTTAAC 58.917 45.455 0.00 0.00 32.29 2.01
243 244 2.424601 GTGCCGATTAACCCCTTTAACC 59.575 50.000 0.00 0.00 32.29 2.85
244 245 2.309458 TGCCGATTAACCCCTTTAACCT 59.691 45.455 0.00 0.00 32.29 3.50
245 246 3.245336 TGCCGATTAACCCCTTTAACCTT 60.245 43.478 0.00 0.00 32.29 3.50
246 247 3.379372 GCCGATTAACCCCTTTAACCTTC 59.621 47.826 0.00 0.00 32.29 3.46
247 248 3.949754 CCGATTAACCCCTTTAACCTTCC 59.050 47.826 0.00 0.00 32.29 3.46
248 249 4.324797 CCGATTAACCCCTTTAACCTTCCT 60.325 45.833 0.00 0.00 32.29 3.36
249 250 5.104402 CCGATTAACCCCTTTAACCTTCCTA 60.104 44.000 0.00 0.00 32.29 2.94
250 251 6.053650 CGATTAACCCCTTTAACCTTCCTAG 58.946 44.000 0.00 0.00 32.29 3.02
251 252 6.352479 CGATTAACCCCTTTAACCTTCCTAGT 60.352 42.308 0.00 0.00 32.29 2.57
252 253 4.652679 AACCCCTTTAACCTTCCTAGTG 57.347 45.455 0.00 0.00 0.00 2.74
253 254 2.307980 ACCCCTTTAACCTTCCTAGTGC 59.692 50.000 0.00 0.00 0.00 4.40
254 255 2.629051 CCCTTTAACCTTCCTAGTGCG 58.371 52.381 0.00 0.00 0.00 5.34
255 256 2.235402 CCCTTTAACCTTCCTAGTGCGA 59.765 50.000 0.00 0.00 0.00 5.10
256 257 3.118371 CCCTTTAACCTTCCTAGTGCGAT 60.118 47.826 0.00 0.00 0.00 4.58
257 258 3.871594 CCTTTAACCTTCCTAGTGCGATG 59.128 47.826 0.00 0.00 0.00 3.84
258 259 3.536956 TTAACCTTCCTAGTGCGATGG 57.463 47.619 0.00 0.00 0.00 3.51
259 260 0.107654 AACCTTCCTAGTGCGATGGC 60.108 55.000 0.00 0.00 40.52 4.40
260 261 1.227674 CCTTCCTAGTGCGATGGCC 60.228 63.158 0.00 0.00 38.85 5.36
261 262 1.227674 CTTCCTAGTGCGATGGCCC 60.228 63.158 0.00 0.00 38.85 5.80
262 263 1.689233 TTCCTAGTGCGATGGCCCT 60.689 57.895 0.00 0.00 38.85 5.19
263 264 0.397957 TTCCTAGTGCGATGGCCCTA 60.398 55.000 0.00 0.00 38.85 3.53
264 265 1.113517 TCCTAGTGCGATGGCCCTAC 61.114 60.000 0.00 0.00 38.85 3.18
265 266 1.007271 CTAGTGCGATGGCCCTACG 60.007 63.158 0.00 4.44 38.85 3.51
266 267 1.452953 CTAGTGCGATGGCCCTACGA 61.453 60.000 15.49 0.00 38.85 3.43
267 268 1.731433 TAGTGCGATGGCCCTACGAC 61.731 60.000 15.49 10.80 38.85 4.34
268 269 2.758327 TGCGATGGCCCTACGACT 60.758 61.111 15.49 0.00 38.85 4.18
269 270 1.454295 TGCGATGGCCCTACGACTA 60.454 57.895 15.49 0.94 38.85 2.59
270 271 1.286260 GCGATGGCCCTACGACTAG 59.714 63.158 15.49 0.00 0.00 2.57
271 272 1.957562 CGATGGCCCTACGACTAGG 59.042 63.158 0.00 0.00 39.67 3.02
272 273 0.822532 CGATGGCCCTACGACTAGGT 60.823 60.000 0.00 0.00 38.39 3.08
273 274 0.960286 GATGGCCCTACGACTAGGTC 59.040 60.000 0.00 0.00 38.39 3.85
274 275 0.469518 ATGGCCCTACGACTAGGTCC 60.470 60.000 0.00 0.00 38.52 4.46
275 276 1.229643 GGCCCTACGACTAGGTCCT 59.770 63.158 0.00 0.00 35.50 3.85
276 277 0.396835 GGCCCTACGACTAGGTCCTT 60.397 60.000 0.00 0.00 35.50 3.36
277 278 0.745468 GCCCTACGACTAGGTCCTTG 59.255 60.000 0.00 0.00 38.39 3.61
278 279 0.745468 CCCTACGACTAGGTCCTTGC 59.255 60.000 0.00 0.00 38.39 4.01
279 280 1.685491 CCCTACGACTAGGTCCTTGCT 60.685 57.143 0.00 0.00 38.39 3.91
280 281 1.677052 CCTACGACTAGGTCCTTGCTC 59.323 57.143 0.00 0.00 35.57 4.26
281 282 2.645802 CTACGACTAGGTCCTTGCTCT 58.354 52.381 0.00 0.00 0.00 4.09
282 283 2.803030 ACGACTAGGTCCTTGCTCTA 57.197 50.000 0.00 0.00 0.00 2.43
283 284 2.645802 ACGACTAGGTCCTTGCTCTAG 58.354 52.381 0.00 0.00 37.20 2.43
284 285 1.950909 CGACTAGGTCCTTGCTCTAGG 59.049 57.143 0.00 0.00 35.92 3.02
285 286 2.421670 CGACTAGGTCCTTGCTCTAGGA 60.422 54.545 0.00 0.00 42.02 2.94
292 293 1.759445 TCCTTGCTCTAGGACATCTGC 59.241 52.381 0.00 0.00 39.40 4.26
293 294 1.202627 CCTTGCTCTAGGACATCTGCC 60.203 57.143 0.00 0.00 37.50 4.85
294 295 0.461548 TTGCTCTAGGACATCTGCCG 59.538 55.000 0.00 0.00 0.00 5.69
295 296 0.684479 TGCTCTAGGACATCTGCCGT 60.684 55.000 0.00 0.00 0.00 5.68
296 297 0.249238 GCTCTAGGACATCTGCCGTG 60.249 60.000 0.00 0.00 0.00 4.94
297 298 1.393603 CTCTAGGACATCTGCCGTGA 58.606 55.000 0.00 0.00 0.00 4.35
298 299 1.066303 CTCTAGGACATCTGCCGTGAC 59.934 57.143 0.00 0.00 0.00 3.67
299 300 0.817654 CTAGGACATCTGCCGTGACA 59.182 55.000 0.00 0.00 0.00 3.58
300 301 1.204704 CTAGGACATCTGCCGTGACAA 59.795 52.381 0.00 0.00 0.00 3.18
301 302 0.320771 AGGACATCTGCCGTGACAAC 60.321 55.000 0.00 0.00 0.00 3.32
302 303 0.320771 GGACATCTGCCGTGACAACT 60.321 55.000 0.00 0.00 0.00 3.16
303 304 1.071605 GACATCTGCCGTGACAACTC 58.928 55.000 0.00 0.00 0.00 3.01
304 305 0.320771 ACATCTGCCGTGACAACTCC 60.321 55.000 0.00 0.00 0.00 3.85
305 306 0.320683 CATCTGCCGTGACAACTCCA 60.321 55.000 0.00 0.00 0.00 3.86
306 307 0.320771 ATCTGCCGTGACAACTCCAC 60.321 55.000 0.00 0.00 0.00 4.02
373 382 2.022240 GCTAGGGTTCCTCTGCCTCG 62.022 65.000 0.00 0.00 34.61 4.63
400 410 1.164041 CCGGCGTTGGTTCTCTTGTT 61.164 55.000 6.01 0.00 0.00 2.83
446 460 1.764854 GAGTGGATCCCGGCCCTTA 60.765 63.158 9.90 0.00 0.00 2.69
502 520 5.856156 TCGAGATTTGTTAGGGTTTGTGTA 58.144 37.500 0.00 0.00 0.00 2.90
509 527 5.473066 TGTTAGGGTTTGTGTACTACTCC 57.527 43.478 0.00 0.00 0.00 3.85
564 582 2.185663 ATAAAGGTCTCCCCGCCTAA 57.814 50.000 0.00 0.00 38.74 2.69
568 586 2.365237 GTCTCCCCGCCTAACCCT 60.365 66.667 0.00 0.00 0.00 4.34
569 587 1.993948 GTCTCCCCGCCTAACCCTT 60.994 63.158 0.00 0.00 0.00 3.95
603 621 3.718210 CTAGCTTCGTCGGTGGGCC 62.718 68.421 0.00 0.00 0.00 5.80
607 625 2.601067 TTCGTCGGTGGGCCTGTA 60.601 61.111 4.53 0.00 0.00 2.74
622 640 1.613520 CCTGTAGAGGTGTGTCTCCGA 60.614 57.143 0.00 0.00 34.16 4.55
661 688 0.029700 TCGTCGCTCGACTTTGTTCA 59.970 50.000 18.51 0.00 44.01 3.18
713 741 3.564027 CTTCATCGGCGGCGGTTC 61.564 66.667 31.73 0.00 0.00 3.62
722 751 3.423154 CGGCGGTTCCTGTTCTGC 61.423 66.667 0.00 0.00 35.47 4.26
763 792 1.028330 TAGCACGACGACTTCCCGAT 61.028 55.000 0.00 0.00 0.00 4.18
878 907 5.221382 GCTAGGTGGTTTACGAATCTGGATA 60.221 44.000 0.00 0.00 0.00 2.59
1086 1124 7.520451 ACATCTTTTTGTTTTAGGGGACTAC 57.480 36.000 0.00 0.00 44.30 2.73
1140 1182 1.133025 TCTATTTCGTTCCGGTCCGTC 59.867 52.381 11.06 0.00 0.00 4.79
1155 1197 4.083862 GTCCGGTCCAGGAGGCAC 62.084 72.222 0.00 0.00 41.68 5.01
1158 1200 4.135153 CGGTCCAGGAGGCACGAG 62.135 72.222 0.00 0.00 36.33 4.18
1159 1201 2.997897 GGTCCAGGAGGCACGAGT 60.998 66.667 0.00 0.00 33.74 4.18
1160 1202 2.574399 GTCCAGGAGGCACGAGTC 59.426 66.667 0.00 0.00 33.74 3.36
1161 1203 3.062466 TCCAGGAGGCACGAGTCG 61.062 66.667 11.85 11.85 33.74 4.18
1162 1204 4.803426 CCAGGAGGCACGAGTCGC 62.803 72.222 13.59 0.00 0.00 5.19
1192 1234 2.782615 GCGTTCCACCGGAATTCG 59.217 61.111 9.46 7.46 44.04 3.34
1315 1367 0.681887 TGCACGTTCGGATCCTAGGA 60.682 55.000 15.46 15.46 0.00 2.94
1538 1607 0.320374 CAGAAGTACACCAAGGCCGA 59.680 55.000 0.00 0.00 0.00 5.54
2097 2179 2.658285 TGCCCAGCAGATTGGATAAAG 58.342 47.619 0.00 0.00 40.87 1.85
2124 2206 8.560355 TTTCGTGTACATAACTACTGGTAGTA 57.440 34.615 12.93 0.00 44.96 1.82
2210 2292 2.548480 GCACTTCGCTGTCTACCTTTTT 59.452 45.455 0.00 0.00 37.77 1.94
2323 2405 5.689961 CCGGTTAGTTTTCTTTGTTCAATGG 59.310 40.000 0.00 0.00 0.00 3.16
2334 2416 6.754193 TCTTTGTTCAATGGGTTGTTTATCC 58.246 36.000 0.03 0.00 36.69 2.59
2471 2553 4.916983 ATTAAATGCTCCAAGCGCAATA 57.083 36.364 11.47 0.00 46.26 1.90
2538 2620 2.937469 TTTGCCTCACTTGTGTTGTG 57.063 45.000 0.46 0.00 36.82 3.33
2549 2631 0.250124 TGTGTTGTGCTTACCCTCCG 60.250 55.000 0.00 0.00 0.00 4.63
2594 2676 2.230940 CGCGATGTCCACCTAAGCG 61.231 63.158 0.00 0.00 40.14 4.68
2600 2682 3.403038 GATGTCCACCTAAGCGCAATAT 58.597 45.455 11.47 0.00 0.00 1.28
2650 2732 0.598419 TCGATCATCGCAGTGCCATC 60.598 55.000 10.11 5.34 40.21 3.51
2651 2733 0.877213 CGATCATCGCAGTGCCATCA 60.877 55.000 10.11 0.00 31.14 3.07
2701 2783 1.952102 TATCCCCGAGTTGGACGTGC 61.952 60.000 0.00 0.00 42.00 5.34
2714 2796 1.359459 GACGTGCCGATTGTCCTTCC 61.359 60.000 0.00 0.00 0.00 3.46
2735 2817 3.517901 CCTGAGATACAACCTACACCCAA 59.482 47.826 0.00 0.00 0.00 4.12
2746 2828 1.351017 CTACACCCAATCCACACACCT 59.649 52.381 0.00 0.00 0.00 4.00
2756 2838 5.163205 CCAATCCACACACCTATCCTCATAA 60.163 44.000 0.00 0.00 0.00 1.90
3061 3143 9.737427 TTTTTCAAAAGTCAGATACGCATTTTA 57.263 25.926 0.00 0.00 0.00 1.52
3062 3144 8.948853 TTTCAAAAGTCAGATACGCATTTTAG 57.051 30.769 0.00 0.00 0.00 1.85
3079 3161 5.957910 TTTTAGACGGCACAAAAACAATG 57.042 34.783 0.00 0.00 0.00 2.82
3159 3241 1.198713 AGCATGAGTGGTCAGGGTAG 58.801 55.000 0.00 0.00 43.10 3.18
3224 3306 3.008813 AGAGCTATTCATATGGTGCCTGG 59.991 47.826 2.13 0.00 0.00 4.45
3225 3307 2.713167 AGCTATTCATATGGTGCCTGGT 59.287 45.455 2.13 0.00 0.00 4.00
3226 3308 3.139025 AGCTATTCATATGGTGCCTGGTT 59.861 43.478 2.13 0.00 0.00 3.67
3227 3309 3.254166 GCTATTCATATGGTGCCTGGTTG 59.746 47.826 2.13 0.00 0.00 3.77
3228 3310 1.473258 TTCATATGGTGCCTGGTTGC 58.527 50.000 2.13 0.00 0.00 4.17
3229 3311 0.625316 TCATATGGTGCCTGGTTGCT 59.375 50.000 2.13 0.00 0.00 3.91
3230 3312 0.742505 CATATGGTGCCTGGTTGCTG 59.257 55.000 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.123854 AGTCTCGGCCGGCTCATA 60.124 61.111 28.56 7.23 0.00 2.15
1 2 3.532155 GAGTCTCGGCCGGCTCAT 61.532 66.667 28.56 8.00 0.00 2.90
2 3 4.742649 AGAGTCTCGGCCGGCTCA 62.743 66.667 31.18 12.30 0.00 4.26
3 4 4.200283 CAGAGTCTCGGCCGGCTC 62.200 72.222 28.56 26.90 0.00 4.70
4 5 3.640257 TACAGAGTCTCGGCCGGCT 62.640 63.158 28.56 20.66 0.00 5.52
5 6 3.127352 CTACAGAGTCTCGGCCGGC 62.127 68.421 27.83 21.18 0.00 6.13
6 7 2.482333 CCTACAGAGTCTCGGCCGG 61.482 68.421 27.83 16.54 0.00 6.13
7 8 3.111939 CCTACAGAGTCTCGGCCG 58.888 66.667 22.12 22.12 0.00 6.13
8 9 2.809010 GCCTACAGAGTCTCGGCC 59.191 66.667 11.77 0.00 34.75 6.13
9 10 2.052690 TGGCCTACAGAGTCTCGGC 61.053 63.158 3.32 13.69 39.98 5.54
10 11 1.668101 GGTGGCCTACAGAGTCTCGG 61.668 65.000 3.32 0.00 0.00 4.63
11 12 0.965866 TGGTGGCCTACAGAGTCTCG 60.966 60.000 3.32 0.00 0.00 4.04
12 13 0.820871 CTGGTGGCCTACAGAGTCTC 59.179 60.000 18.78 0.00 36.86 3.36
13 14 0.616111 CCTGGTGGCCTACAGAGTCT 60.616 60.000 23.40 0.00 36.86 3.24
14 15 1.901085 CCTGGTGGCCTACAGAGTC 59.099 63.158 23.40 1.48 36.86 3.36
15 16 4.136978 CCTGGTGGCCTACAGAGT 57.863 61.111 23.40 0.00 36.86 3.24
26 27 4.619227 ACGGGTTGACGCCTGGTG 62.619 66.667 5.54 5.54 39.19 4.17
27 28 4.619227 CACGGGTTGACGCCTGGT 62.619 66.667 0.00 0.00 39.19 4.00
28 29 2.515996 ATACACGGGTTGACGCCTGG 62.516 60.000 0.00 0.00 39.19 4.45
29 30 0.173935 TATACACGGGTTGACGCCTG 59.826 55.000 0.00 0.00 40.67 4.85
30 31 1.117150 ATATACACGGGTTGACGCCT 58.883 50.000 0.00 0.00 37.37 5.52
31 32 2.798976 TATATACACGGGTTGACGCC 57.201 50.000 0.00 0.00 37.37 5.68
32 33 3.054878 CCTTATATACACGGGTTGACGC 58.945 50.000 0.00 0.00 37.37 5.19
33 34 3.553508 CCCCTTATATACACGGGTTGACG 60.554 52.174 0.00 0.00 34.81 4.35
34 35 3.642848 TCCCCTTATATACACGGGTTGAC 59.357 47.826 0.00 0.00 34.81 3.18
35 36 3.642848 GTCCCCTTATATACACGGGTTGA 59.357 47.826 0.00 0.00 34.81 3.18
36 37 3.553508 CGTCCCCTTATATACACGGGTTG 60.554 52.174 0.00 0.00 34.81 3.77
37 38 2.629617 CGTCCCCTTATATACACGGGTT 59.370 50.000 0.00 0.00 34.81 4.11
38 39 2.158475 TCGTCCCCTTATATACACGGGT 60.158 50.000 0.00 0.00 34.81 5.28
39 40 2.229784 GTCGTCCCCTTATATACACGGG 59.770 54.545 4.60 4.60 36.42 5.28
40 41 2.229784 GGTCGTCCCCTTATATACACGG 59.770 54.545 0.00 0.00 0.00 4.94
41 42 3.565905 GGTCGTCCCCTTATATACACG 57.434 52.381 0.00 0.00 0.00 4.49
62 63 4.708386 TGCCCTAAACCGCCACCG 62.708 66.667 0.00 0.00 0.00 4.94
63 64 2.282603 TTGCCCTAAACCGCCACC 60.283 61.111 0.00 0.00 0.00 4.61
64 65 0.891904 TTCTTGCCCTAAACCGCCAC 60.892 55.000 0.00 0.00 0.00 5.01
65 66 0.178987 TTTCTTGCCCTAAACCGCCA 60.179 50.000 0.00 0.00 0.00 5.69
66 67 0.242825 GTTTCTTGCCCTAAACCGCC 59.757 55.000 0.00 0.00 30.93 6.13
67 68 0.955905 TGTTTCTTGCCCTAAACCGC 59.044 50.000 0.00 0.00 35.23 5.68
68 69 2.287970 GGTTGTTTCTTGCCCTAAACCG 60.288 50.000 0.00 0.00 35.23 4.44
69 70 2.696187 TGGTTGTTTCTTGCCCTAAACC 59.304 45.455 0.00 0.00 35.23 3.27
70 71 4.142026 ACTTGGTTGTTTCTTGCCCTAAAC 60.142 41.667 0.00 0.00 36.38 2.01
71 72 4.027437 ACTTGGTTGTTTCTTGCCCTAAA 58.973 39.130 0.00 0.00 0.00 1.85
72 73 3.634910 GACTTGGTTGTTTCTTGCCCTAA 59.365 43.478 0.00 0.00 0.00 2.69
73 74 3.219281 GACTTGGTTGTTTCTTGCCCTA 58.781 45.455 0.00 0.00 0.00 3.53
74 75 2.031870 GACTTGGTTGTTTCTTGCCCT 58.968 47.619 0.00 0.00 0.00 5.19
75 76 1.269051 CGACTTGGTTGTTTCTTGCCC 60.269 52.381 0.00 0.00 0.00 5.36
76 77 1.673920 TCGACTTGGTTGTTTCTTGCC 59.326 47.619 0.00 0.00 0.00 4.52
77 78 3.626028 ATCGACTTGGTTGTTTCTTGC 57.374 42.857 0.00 0.00 0.00 4.01
78 79 5.008217 TGGTTATCGACTTGGTTGTTTCTTG 59.992 40.000 0.00 0.00 0.00 3.02
79 80 5.127491 TGGTTATCGACTTGGTTGTTTCTT 58.873 37.500 0.00 0.00 0.00 2.52
80 81 4.710324 TGGTTATCGACTTGGTTGTTTCT 58.290 39.130 0.00 0.00 0.00 2.52
81 82 5.427036 TTGGTTATCGACTTGGTTGTTTC 57.573 39.130 0.00 0.00 0.00 2.78
82 83 4.261447 GCTTGGTTATCGACTTGGTTGTTT 60.261 41.667 0.00 0.00 0.00 2.83
83 84 3.252458 GCTTGGTTATCGACTTGGTTGTT 59.748 43.478 0.00 0.00 0.00 2.83
84 85 2.812011 GCTTGGTTATCGACTTGGTTGT 59.188 45.455 0.00 0.00 0.00 3.32
85 86 2.161609 GGCTTGGTTATCGACTTGGTTG 59.838 50.000 0.00 0.00 0.00 3.77
86 87 2.433436 GGCTTGGTTATCGACTTGGTT 58.567 47.619 0.00 0.00 0.00 3.67
87 88 1.674817 CGGCTTGGTTATCGACTTGGT 60.675 52.381 0.00 0.00 0.00 3.67
88 89 1.006832 CGGCTTGGTTATCGACTTGG 58.993 55.000 0.00 0.00 0.00 3.61
89 90 1.006832 CCGGCTTGGTTATCGACTTG 58.993 55.000 0.00 0.00 0.00 3.16
90 91 0.743345 GCCGGCTTGGTTATCGACTT 60.743 55.000 22.15 0.00 41.21 3.01
91 92 1.153429 GCCGGCTTGGTTATCGACT 60.153 57.895 22.15 0.00 41.21 4.18
92 93 2.522638 CGCCGGCTTGGTTATCGAC 61.523 63.158 26.68 0.00 41.21 4.20
93 94 2.202824 CGCCGGCTTGGTTATCGA 60.203 61.111 26.68 0.00 41.21 3.59
94 95 2.202824 TCGCCGGCTTGGTTATCG 60.203 61.111 26.68 5.22 41.21 2.92
95 96 0.743345 AACTCGCCGGCTTGGTTATC 60.743 55.000 26.68 0.00 41.21 1.75
96 97 0.538118 TAACTCGCCGGCTTGGTTAT 59.462 50.000 26.68 8.57 41.21 1.89
97 98 0.321021 TTAACTCGCCGGCTTGGTTA 59.679 50.000 26.68 24.07 41.21 2.85
98 99 1.071814 TTAACTCGCCGGCTTGGTT 59.928 52.632 26.68 25.05 41.21 3.67
99 100 1.670083 GTTAACTCGCCGGCTTGGT 60.670 57.895 26.68 17.88 41.21 3.67
100 101 2.396157 GGTTAACTCGCCGGCTTGG 61.396 63.158 26.68 16.22 42.50 3.61
101 102 2.396157 GGGTTAACTCGCCGGCTTG 61.396 63.158 26.68 18.98 0.00 4.01
102 103 2.046604 GGGTTAACTCGCCGGCTT 60.047 61.111 26.68 15.06 0.00 4.35
103 104 3.001406 AGGGTTAACTCGCCGGCT 61.001 61.111 26.68 8.22 0.00 5.52
104 105 2.510918 GAGGGTTAACTCGCCGGC 60.511 66.667 19.07 19.07 0.00 6.13
105 106 0.739813 CAAGAGGGTTAACTCGCCGG 60.740 60.000 5.51 0.00 42.31 6.13
106 107 0.739813 CCAAGAGGGTTAACTCGCCG 60.740 60.000 5.51 0.00 42.31 6.46
107 108 0.611714 TCCAAGAGGGTTAACTCGCC 59.388 55.000 5.51 0.00 42.31 5.54
108 109 1.549170 TCTCCAAGAGGGTTAACTCGC 59.451 52.381 5.42 2.83 42.31 5.03
109 110 3.489398 CGATCTCCAAGAGGGTTAACTCG 60.489 52.174 5.42 0.00 42.31 4.18
110 111 3.700038 TCGATCTCCAAGAGGGTTAACTC 59.300 47.826 5.42 0.21 38.11 3.01
111 112 3.709587 TCGATCTCCAAGAGGGTTAACT 58.290 45.455 5.42 0.00 38.11 2.24
112 113 4.467198 TTCGATCTCCAAGAGGGTTAAC 57.533 45.455 0.00 0.00 38.11 2.01
113 114 4.323257 GGTTTCGATCTCCAAGAGGGTTAA 60.323 45.833 0.00 0.00 38.11 2.01
114 115 3.197116 GGTTTCGATCTCCAAGAGGGTTA 59.803 47.826 0.00 0.00 38.11 2.85
115 116 2.027100 GGTTTCGATCTCCAAGAGGGTT 60.027 50.000 0.00 0.00 38.11 4.11
116 117 1.555533 GGTTTCGATCTCCAAGAGGGT 59.444 52.381 0.00 0.00 38.11 4.34
117 118 1.834263 AGGTTTCGATCTCCAAGAGGG 59.166 52.381 0.00 0.00 34.83 4.30
118 119 2.497675 TGAGGTTTCGATCTCCAAGAGG 59.502 50.000 7.99 0.00 0.00 3.69
119 120 3.779759 CTGAGGTTTCGATCTCCAAGAG 58.220 50.000 7.99 0.00 0.00 2.85
120 121 2.093973 GCTGAGGTTTCGATCTCCAAGA 60.094 50.000 7.99 0.00 0.00 3.02
121 122 2.275318 GCTGAGGTTTCGATCTCCAAG 58.725 52.381 7.99 4.78 0.00 3.61
122 123 1.623311 TGCTGAGGTTTCGATCTCCAA 59.377 47.619 7.99 0.00 0.00 3.53
123 124 1.266178 TGCTGAGGTTTCGATCTCCA 58.734 50.000 7.99 0.00 0.00 3.86
124 125 2.386661 TTGCTGAGGTTTCGATCTCC 57.613 50.000 7.99 1.82 0.00 3.71
125 126 3.804873 GGTATTGCTGAGGTTTCGATCTC 59.195 47.826 0.00 0.00 0.00 2.75
126 127 3.197766 TGGTATTGCTGAGGTTTCGATCT 59.802 43.478 0.00 0.00 0.00 2.75
127 128 3.531538 TGGTATTGCTGAGGTTTCGATC 58.468 45.455 0.00 0.00 0.00 3.69
128 129 3.627395 TGGTATTGCTGAGGTTTCGAT 57.373 42.857 0.00 0.00 0.00 3.59
129 130 3.410631 TTGGTATTGCTGAGGTTTCGA 57.589 42.857 0.00 0.00 0.00 3.71
130 131 3.065371 GGATTGGTATTGCTGAGGTTTCG 59.935 47.826 0.00 0.00 0.00 3.46
131 132 3.381590 GGGATTGGTATTGCTGAGGTTTC 59.618 47.826 0.00 0.00 0.00 2.78
132 133 3.245586 TGGGATTGGTATTGCTGAGGTTT 60.246 43.478 0.00 0.00 0.00 3.27
133 134 2.311542 TGGGATTGGTATTGCTGAGGTT 59.688 45.455 0.00 0.00 0.00 3.50
134 135 1.922447 TGGGATTGGTATTGCTGAGGT 59.078 47.619 0.00 0.00 0.00 3.85
135 136 2.689983 GTTGGGATTGGTATTGCTGAGG 59.310 50.000 0.00 0.00 0.00 3.86
136 137 3.624777 AGTTGGGATTGGTATTGCTGAG 58.375 45.455 0.00 0.00 0.00 3.35
137 138 3.737559 AGTTGGGATTGGTATTGCTGA 57.262 42.857 0.00 0.00 0.00 4.26
138 139 4.576463 GTCTAGTTGGGATTGGTATTGCTG 59.424 45.833 0.00 0.00 0.00 4.41
139 140 4.683400 CGTCTAGTTGGGATTGGTATTGCT 60.683 45.833 0.00 0.00 0.00 3.91
140 141 3.560068 CGTCTAGTTGGGATTGGTATTGC 59.440 47.826 0.00 0.00 0.00 3.56
141 142 4.766375 ACGTCTAGTTGGGATTGGTATTG 58.234 43.478 0.00 0.00 0.00 1.90
142 143 5.070047 CCTACGTCTAGTTGGGATTGGTATT 59.930 44.000 0.00 0.00 41.19 1.89
143 144 4.587684 CCTACGTCTAGTTGGGATTGGTAT 59.412 45.833 0.00 0.00 41.19 2.73
144 145 3.956199 CCTACGTCTAGTTGGGATTGGTA 59.044 47.826 0.00 0.00 41.19 3.25
145 146 2.764572 CCTACGTCTAGTTGGGATTGGT 59.235 50.000 0.00 0.00 41.19 3.67
146 147 2.483188 GCCTACGTCTAGTTGGGATTGG 60.483 54.545 0.00 0.00 44.34 3.16
147 148 2.431057 AGCCTACGTCTAGTTGGGATTG 59.569 50.000 0.00 0.00 44.34 2.67
148 149 2.748388 AGCCTACGTCTAGTTGGGATT 58.252 47.619 0.00 0.00 44.34 3.01
149 150 2.456073 AGCCTACGTCTAGTTGGGAT 57.544 50.000 0.00 0.00 44.34 3.85
150 151 2.226962 AAGCCTACGTCTAGTTGGGA 57.773 50.000 0.00 0.00 44.34 4.37
151 152 3.329929 AAAAGCCTACGTCTAGTTGGG 57.670 47.619 0.00 0.00 44.34 4.12
152 153 4.081807 AGGTAAAAGCCTACGTCTAGTTGG 60.082 45.833 0.00 0.00 46.43 3.77
153 154 5.069501 AGGTAAAAGCCTACGTCTAGTTG 57.930 43.478 0.00 0.00 37.04 3.16
154 155 5.244626 TGAAGGTAAAAGCCTACGTCTAGTT 59.755 40.000 0.00 0.00 38.03 2.24
155 156 4.768968 TGAAGGTAAAAGCCTACGTCTAGT 59.231 41.667 0.00 0.00 38.03 2.57
156 157 5.320549 TGAAGGTAAAAGCCTACGTCTAG 57.679 43.478 0.00 0.00 38.03 2.43
157 158 5.449588 CGATGAAGGTAAAAGCCTACGTCTA 60.450 44.000 0.00 0.00 38.03 2.59
158 159 4.677250 CGATGAAGGTAAAAGCCTACGTCT 60.677 45.833 0.00 0.00 38.03 4.18
159 160 3.550678 CGATGAAGGTAAAAGCCTACGTC 59.449 47.826 0.00 0.00 38.03 4.34
160 161 3.056322 ACGATGAAGGTAAAAGCCTACGT 60.056 43.478 0.00 0.00 38.03 3.57
161 162 3.518590 ACGATGAAGGTAAAAGCCTACG 58.481 45.455 0.00 0.00 38.03 3.51
162 163 5.522824 CCTTACGATGAAGGTAAAAGCCTAC 59.477 44.000 0.00 0.00 41.09 3.18
163 164 5.395990 CCCTTACGATGAAGGTAAAAGCCTA 60.396 44.000 12.37 0.00 44.02 3.93
164 165 4.514401 CCTTACGATGAAGGTAAAAGCCT 58.486 43.478 0.00 0.00 41.09 4.58
165 166 3.626217 CCCTTACGATGAAGGTAAAAGCC 59.374 47.826 12.37 0.00 44.02 4.35
166 167 3.626217 CCCCTTACGATGAAGGTAAAAGC 59.374 47.826 12.37 0.00 44.02 3.51
167 168 3.626217 GCCCCTTACGATGAAGGTAAAAG 59.374 47.826 12.37 0.00 44.02 2.27
168 169 3.613030 GCCCCTTACGATGAAGGTAAAA 58.387 45.455 12.37 0.00 44.02 1.52
169 170 2.092807 GGCCCCTTACGATGAAGGTAAA 60.093 50.000 12.37 0.00 44.02 2.01
170 171 1.487558 GGCCCCTTACGATGAAGGTAA 59.512 52.381 12.37 0.00 44.02 2.85
171 172 1.125633 GGCCCCTTACGATGAAGGTA 58.874 55.000 12.37 0.00 44.02 3.08
172 173 0.912487 TGGCCCCTTACGATGAAGGT 60.912 55.000 0.00 0.00 44.02 3.50
173 174 0.254747 TTGGCCCCTTACGATGAAGG 59.745 55.000 0.00 8.09 44.96 3.46
174 175 1.743394 GTTTGGCCCCTTACGATGAAG 59.257 52.381 0.00 0.00 0.00 3.02
175 176 1.353022 AGTTTGGCCCCTTACGATGAA 59.647 47.619 0.00 0.00 0.00 2.57
176 177 0.988832 AGTTTGGCCCCTTACGATGA 59.011 50.000 0.00 0.00 0.00 2.92
177 178 2.093128 ACTAGTTTGGCCCCTTACGATG 60.093 50.000 0.00 0.00 0.00 3.84
178 179 2.193993 ACTAGTTTGGCCCCTTACGAT 58.806 47.619 0.00 0.00 0.00 3.73
179 180 1.648116 ACTAGTTTGGCCCCTTACGA 58.352 50.000 0.00 0.00 0.00 3.43
180 181 3.832615 ATACTAGTTTGGCCCCTTACG 57.167 47.619 0.00 0.00 0.00 3.18
181 182 7.613022 AGTTTTTATACTAGTTTGGCCCCTTAC 59.387 37.037 0.00 0.00 0.00 2.34
182 183 7.701815 AGTTTTTATACTAGTTTGGCCCCTTA 58.298 34.615 0.00 0.00 0.00 2.69
183 184 6.558498 AGTTTTTATACTAGTTTGGCCCCTT 58.442 36.000 0.00 0.00 0.00 3.95
184 185 6.011893 AGAGTTTTTATACTAGTTTGGCCCCT 60.012 38.462 0.00 0.00 0.00 4.79
185 186 6.185511 AGAGTTTTTATACTAGTTTGGCCCC 58.814 40.000 0.00 0.00 0.00 5.80
186 187 7.110810 AGAGAGTTTTTATACTAGTTTGGCCC 58.889 38.462 0.00 0.00 0.00 5.80
187 188 7.010275 CGAGAGAGTTTTTATACTAGTTTGGCC 59.990 40.741 0.00 0.00 0.00 5.36
188 189 7.544915 ACGAGAGAGTTTTTATACTAGTTTGGC 59.455 37.037 0.00 0.00 0.00 4.52
189 190 8.861101 CACGAGAGAGTTTTTATACTAGTTTGG 58.139 37.037 0.00 0.00 0.00 3.28
190 191 9.408069 ACACGAGAGAGTTTTTATACTAGTTTG 57.592 33.333 0.00 0.00 0.00 2.93
191 192 9.623350 GACACGAGAGAGTTTTTATACTAGTTT 57.377 33.333 0.00 0.00 34.22 2.66
192 193 8.242739 GGACACGAGAGAGTTTTTATACTAGTT 58.757 37.037 0.00 0.00 34.22 2.24
193 194 7.611079 AGGACACGAGAGAGTTTTTATACTAGT 59.389 37.037 0.00 0.00 34.22 2.57
194 195 7.987649 AGGACACGAGAGAGTTTTTATACTAG 58.012 38.462 0.00 0.00 34.22 2.57
195 196 7.934855 AGGACACGAGAGAGTTTTTATACTA 57.065 36.000 0.00 0.00 34.22 1.82
196 197 6.837471 AGGACACGAGAGAGTTTTTATACT 57.163 37.500 0.00 0.00 34.22 2.12
197 198 7.384387 ACAAAGGACACGAGAGAGTTTTTATAC 59.616 37.037 0.00 0.00 34.22 1.47
198 199 7.384115 CACAAAGGACACGAGAGAGTTTTTATA 59.616 37.037 0.00 0.00 34.22 0.98
199 200 6.202954 CACAAAGGACACGAGAGAGTTTTTAT 59.797 38.462 0.00 0.00 34.22 1.40
200 201 5.522460 CACAAAGGACACGAGAGAGTTTTTA 59.478 40.000 0.00 0.00 34.22 1.52
201 202 4.332819 CACAAAGGACACGAGAGAGTTTTT 59.667 41.667 0.00 0.00 34.22 1.94
202 203 3.871594 CACAAAGGACACGAGAGAGTTTT 59.128 43.478 0.00 0.00 34.22 2.43
203 204 3.458189 CACAAAGGACACGAGAGAGTTT 58.542 45.455 0.00 0.00 34.22 2.66
204 205 2.803492 GCACAAAGGACACGAGAGAGTT 60.803 50.000 0.00 0.00 34.22 3.01
205 206 1.269831 GCACAAAGGACACGAGAGAGT 60.270 52.381 0.00 0.00 37.72 3.24
206 207 1.423395 GCACAAAGGACACGAGAGAG 58.577 55.000 0.00 0.00 0.00 3.20
207 208 0.033504 GGCACAAAGGACACGAGAGA 59.966 55.000 0.00 0.00 0.00 3.10
208 209 1.284982 CGGCACAAAGGACACGAGAG 61.285 60.000 0.00 0.00 0.00 3.20
209 210 1.300620 CGGCACAAAGGACACGAGA 60.301 57.895 0.00 0.00 0.00 4.04
210 211 0.670546 ATCGGCACAAAGGACACGAG 60.671 55.000 0.00 0.00 33.64 4.18
211 212 0.250124 AATCGGCACAAAGGACACGA 60.250 50.000 0.00 0.00 34.70 4.35
212 213 1.434555 TAATCGGCACAAAGGACACG 58.565 50.000 0.00 0.00 0.00 4.49
213 214 2.095415 GGTTAATCGGCACAAAGGACAC 60.095 50.000 0.00 0.00 0.00 3.67
214 215 2.156098 GGTTAATCGGCACAAAGGACA 58.844 47.619 0.00 0.00 0.00 4.02
215 216 1.471287 GGGTTAATCGGCACAAAGGAC 59.529 52.381 0.00 0.00 0.00 3.85
216 217 1.614850 GGGGTTAATCGGCACAAAGGA 60.615 52.381 0.00 0.00 0.00 3.36
217 218 0.815095 GGGGTTAATCGGCACAAAGG 59.185 55.000 0.00 0.00 0.00 3.11
218 219 1.834188 AGGGGTTAATCGGCACAAAG 58.166 50.000 0.00 0.00 0.00 2.77
219 220 2.296073 AAGGGGTTAATCGGCACAAA 57.704 45.000 0.00 0.00 0.00 2.83
220 221 2.296073 AAAGGGGTTAATCGGCACAA 57.704 45.000 0.00 0.00 0.00 3.33
221 222 3.083293 GTTAAAGGGGTTAATCGGCACA 58.917 45.455 0.00 0.00 34.23 4.57
222 223 2.424601 GGTTAAAGGGGTTAATCGGCAC 59.575 50.000 0.00 0.00 34.23 5.01
223 224 2.309458 AGGTTAAAGGGGTTAATCGGCA 59.691 45.455 0.00 0.00 37.79 5.69
224 225 3.008835 AGGTTAAAGGGGTTAATCGGC 57.991 47.619 0.00 0.00 37.79 5.54
225 226 3.949754 GGAAGGTTAAAGGGGTTAATCGG 59.050 47.826 0.00 0.00 37.79 4.18
226 227 4.851843 AGGAAGGTTAAAGGGGTTAATCG 58.148 43.478 0.00 0.00 37.79 3.34
227 228 6.827251 CACTAGGAAGGTTAAAGGGGTTAATC 59.173 42.308 0.00 0.00 34.23 1.75
228 229 6.728411 CACTAGGAAGGTTAAAGGGGTTAAT 58.272 40.000 0.00 0.00 34.23 1.40
229 230 5.515359 GCACTAGGAAGGTTAAAGGGGTTAA 60.515 44.000 0.00 0.00 0.00 2.01
230 231 4.019051 GCACTAGGAAGGTTAAAGGGGTTA 60.019 45.833 0.00 0.00 0.00 2.85
231 232 3.245158 GCACTAGGAAGGTTAAAGGGGTT 60.245 47.826 0.00 0.00 0.00 4.11
232 233 2.307980 GCACTAGGAAGGTTAAAGGGGT 59.692 50.000 0.00 0.00 0.00 4.95
233 234 2.679930 CGCACTAGGAAGGTTAAAGGGG 60.680 54.545 0.00 0.00 0.00 4.79
234 235 2.235402 TCGCACTAGGAAGGTTAAAGGG 59.765 50.000 0.00 0.00 0.00 3.95
235 236 3.604875 TCGCACTAGGAAGGTTAAAGG 57.395 47.619 0.00 0.00 0.00 3.11
236 237 3.871594 CCATCGCACTAGGAAGGTTAAAG 59.128 47.826 0.00 0.00 0.00 1.85
237 238 3.869065 CCATCGCACTAGGAAGGTTAAA 58.131 45.455 0.00 0.00 0.00 1.52
238 239 2.419574 GCCATCGCACTAGGAAGGTTAA 60.420 50.000 0.00 0.00 34.03 2.01
239 240 1.138266 GCCATCGCACTAGGAAGGTTA 59.862 52.381 0.00 0.00 34.03 2.85
240 241 0.107654 GCCATCGCACTAGGAAGGTT 60.108 55.000 0.00 0.00 34.03 3.50
241 242 1.522569 GCCATCGCACTAGGAAGGT 59.477 57.895 0.00 0.00 34.03 3.50
242 243 1.227674 GGCCATCGCACTAGGAAGG 60.228 63.158 0.00 0.00 36.38 3.46
243 244 1.227674 GGGCCATCGCACTAGGAAG 60.228 63.158 4.39 0.00 34.62 3.46
244 245 2.908015 GGGCCATCGCACTAGGAA 59.092 61.111 4.39 0.00 34.62 3.36
250 251 1.731433 TAGTCGTAGGGCCATCGCAC 61.731 60.000 6.18 9.92 39.44 5.34
251 252 1.452953 CTAGTCGTAGGGCCATCGCA 61.453 60.000 6.18 0.00 36.38 5.10
252 253 1.286260 CTAGTCGTAGGGCCATCGC 59.714 63.158 6.18 6.51 0.00 4.58
253 254 1.957562 CCTAGTCGTAGGGCCATCG 59.042 63.158 6.18 10.35 42.25 3.84
261 262 2.645802 AGAGCAAGGACCTAGTCGTAG 58.354 52.381 0.00 0.00 32.65 3.51
262 263 2.803030 AGAGCAAGGACCTAGTCGTA 57.197 50.000 0.00 0.00 32.65 3.43
263 264 2.645802 CTAGAGCAAGGACCTAGTCGT 58.354 52.381 0.00 0.00 32.65 4.34
264 265 1.950909 CCTAGAGCAAGGACCTAGTCG 59.049 57.143 0.00 0.00 39.15 4.18
265 266 3.300239 TCCTAGAGCAAGGACCTAGTC 57.700 52.381 0.00 0.00 40.86 2.59
272 273 1.759445 GCAGATGTCCTAGAGCAAGGA 59.241 52.381 0.00 0.00 43.58 3.36
273 274 1.202627 GGCAGATGTCCTAGAGCAAGG 60.203 57.143 0.00 0.00 38.06 3.61
274 275 1.537776 CGGCAGATGTCCTAGAGCAAG 60.538 57.143 0.00 0.00 0.00 4.01
275 276 0.461548 CGGCAGATGTCCTAGAGCAA 59.538 55.000 0.00 0.00 0.00 3.91
276 277 0.684479 ACGGCAGATGTCCTAGAGCA 60.684 55.000 0.00 0.00 0.00 4.26
277 278 0.249238 CACGGCAGATGTCCTAGAGC 60.249 60.000 0.00 0.00 0.00 4.09
278 279 1.066303 GTCACGGCAGATGTCCTAGAG 59.934 57.143 0.00 0.00 0.00 2.43
279 280 1.103803 GTCACGGCAGATGTCCTAGA 58.896 55.000 0.00 0.00 0.00 2.43
280 281 0.817654 TGTCACGGCAGATGTCCTAG 59.182 55.000 0.00 0.00 0.00 3.02
281 282 1.067142 GTTGTCACGGCAGATGTCCTA 60.067 52.381 0.00 0.00 0.00 2.94
282 283 0.320771 GTTGTCACGGCAGATGTCCT 60.321 55.000 0.00 0.00 0.00 3.85
283 284 0.320771 AGTTGTCACGGCAGATGTCC 60.321 55.000 0.00 0.00 0.00 4.02
284 285 1.071605 GAGTTGTCACGGCAGATGTC 58.928 55.000 0.00 0.00 0.00 3.06
285 286 0.320771 GGAGTTGTCACGGCAGATGT 60.321 55.000 0.00 0.00 0.00 3.06
286 287 0.320683 TGGAGTTGTCACGGCAGATG 60.321 55.000 0.00 0.00 0.00 2.90
287 288 0.320771 GTGGAGTTGTCACGGCAGAT 60.321 55.000 0.00 0.00 0.00 2.90
288 289 1.069090 GTGGAGTTGTCACGGCAGA 59.931 57.895 0.00 0.00 0.00 4.26
289 290 3.642755 GTGGAGTTGTCACGGCAG 58.357 61.111 0.00 0.00 0.00 4.85
294 295 1.202371 TCACTGTCGTGGAGTTGTCAC 60.202 52.381 0.00 0.00 41.53 3.67
295 296 1.067060 CTCACTGTCGTGGAGTTGTCA 59.933 52.381 0.00 0.00 41.53 3.58
296 297 1.772182 CTCACTGTCGTGGAGTTGTC 58.228 55.000 0.00 0.00 41.53 3.18
297 298 0.249489 GCTCACTGTCGTGGAGTTGT 60.249 55.000 0.00 0.00 41.53 3.32
298 299 0.249447 TGCTCACTGTCGTGGAGTTG 60.249 55.000 0.00 0.00 41.53 3.16
299 300 0.464036 TTGCTCACTGTCGTGGAGTT 59.536 50.000 0.00 0.00 41.53 3.01
300 301 0.464036 TTTGCTCACTGTCGTGGAGT 59.536 50.000 0.00 0.00 41.53 3.85
301 302 1.143305 CTTTGCTCACTGTCGTGGAG 58.857 55.000 0.00 0.00 41.53 3.86
302 303 0.249868 CCTTTGCTCACTGTCGTGGA 60.250 55.000 0.00 0.00 41.53 4.02
303 304 1.230635 CCCTTTGCTCACTGTCGTGG 61.231 60.000 0.00 0.00 41.53 4.94
304 305 1.845809 GCCCTTTGCTCACTGTCGTG 61.846 60.000 0.00 0.00 42.59 4.35
305 306 1.598130 GCCCTTTGCTCACTGTCGT 60.598 57.895 0.00 0.00 36.87 4.34
306 307 0.957395 ATGCCCTTTGCTCACTGTCG 60.957 55.000 0.00 0.00 42.00 4.35
307 308 1.068055 CAATGCCCTTTGCTCACTGTC 60.068 52.381 0.00 0.00 42.00 3.51
308 309 0.963962 CAATGCCCTTTGCTCACTGT 59.036 50.000 0.00 0.00 42.00 3.55
309 310 0.389426 GCAATGCCCTTTGCTCACTG 60.389 55.000 10.53 0.00 46.66 3.66
310 311 1.969862 GCAATGCCCTTTGCTCACT 59.030 52.632 10.53 0.00 46.66 3.41
380 389 1.597027 CAAGAGAACCAACGCCGGT 60.597 57.895 1.90 0.00 42.71 5.28
392 401 1.072505 GGCCACGGGAAACAAGAGA 59.927 57.895 0.00 0.00 0.00 3.10
394 403 0.766131 TAAGGCCACGGGAAACAAGA 59.234 50.000 5.01 0.00 0.00 3.02
502 520 1.465794 GTCTCGCCTTCTGGAGTAGT 58.534 55.000 0.00 0.00 34.59 2.73
509 527 2.202492 CCGTCGTCTCGCCTTCTG 60.202 66.667 0.00 0.00 0.00 3.02
564 582 0.179056 CGCATCACCGGAATAAGGGT 60.179 55.000 9.46 0.00 36.87 4.34
568 586 2.545113 GCTAGACGCATCACCGGAATAA 60.545 50.000 9.46 0.00 38.92 1.40
569 587 1.000607 GCTAGACGCATCACCGGAATA 60.001 52.381 9.46 0.00 38.92 1.75
590 608 2.601067 TACAGGCCCACCGACGAA 60.601 61.111 0.00 0.00 42.76 3.85
603 621 1.822506 TCGGAGACACACCTCTACAG 58.177 55.000 0.00 0.00 33.79 2.74
607 625 0.039764 TCCATCGGAGACACACCTCT 59.960 55.000 0.00 0.00 42.51 3.69
622 640 3.209410 GAACAGATCCGAGCAAATCCAT 58.791 45.455 0.00 0.00 0.00 3.41
652 679 5.659440 ACCTGAAAACACATGAACAAAGT 57.341 34.783 0.00 0.00 0.00 2.66
661 688 4.118168 AGGATCCAACCTGAAAACACAT 57.882 40.909 15.82 0.00 39.01 3.21
713 741 1.447317 AACCAACGCAGCAGAACAGG 61.447 55.000 0.00 0.00 0.00 4.00
722 751 1.376609 GCCCCATAGAACCAACGCAG 61.377 60.000 0.00 0.00 0.00 5.18
763 792 5.818857 GGACAAACCTTGTTGTAGTAGACAA 59.181 40.000 0.00 0.00 45.52 3.18
800 829 3.842923 CGCTGTCATCGCCCCTCT 61.843 66.667 0.00 0.00 0.00 3.69
902 931 9.500785 TTCATCTTCAATCATGTTAGTACAACA 57.499 29.630 11.53 11.53 37.91 3.33
953 982 3.495193 TCTTTCGAATTCTGTACGTCGG 58.505 45.455 0.00 0.00 34.32 4.79
954 983 3.001954 GCTCTTTCGAATTCTGTACGTCG 60.002 47.826 0.00 0.00 34.85 5.12
955 984 3.918591 TGCTCTTTCGAATTCTGTACGTC 59.081 43.478 0.00 0.00 0.00 4.34
956 985 3.909430 TGCTCTTTCGAATTCTGTACGT 58.091 40.909 0.00 0.00 0.00 3.57
957 986 4.149922 TGTTGCTCTTTCGAATTCTGTACG 59.850 41.667 0.00 0.00 0.00 3.67
1086 1124 4.585162 AGACACAGACCGAAATAGATAGGG 59.415 45.833 0.00 0.00 0.00 3.53
1315 1367 3.125607 CATCGCCATTGCTGCCAT 58.874 55.556 0.00 0.00 34.43 4.40
1742 1811 1.961277 CAGAAAGTGAAGCCGCCGT 60.961 57.895 0.00 0.00 0.00 5.68
1743 1812 2.863153 CAGAAAGTGAAGCCGCCG 59.137 61.111 0.00 0.00 0.00 6.46
1744 1813 1.518903 AAGCAGAAAGTGAAGCCGCC 61.519 55.000 0.00 0.00 0.00 6.13
2062 2139 1.686325 GGGCAGCCCTCGAGTCATAA 61.686 60.000 24.99 0.00 41.34 1.90
2097 2179 7.809806 ACTACCAGTAGTTATGTACACGAAAAC 59.190 37.037 0.00 0.91 43.35 2.43
2124 2206 9.778741 TTGATGTTTTTCAGATCAAGTACTACT 57.221 29.630 0.00 0.00 0.00 2.57
2355 2437 8.421784 GGAAAGAACCAGAAGTTAAAGGAAAAT 58.578 33.333 0.00 0.00 39.40 1.82
2426 2508 1.275010 TCTCTATCGTTGCAAGGCACA 59.725 47.619 14.22 0.00 38.71 4.57
2471 2553 4.721132 TGTAAAAGGGTGGAATCGTTCTT 58.279 39.130 0.00 0.00 0.00 2.52
2517 2599 3.117794 CACAACACAAGTGAGGCAAATG 58.882 45.455 7.28 0.00 39.30 2.32
2519 2601 1.135141 GCACAACACAAGTGAGGCAAA 60.135 47.619 7.28 0.00 39.30 3.68
2538 2620 1.034292 AGGACGTACGGAGGGTAAGC 61.034 60.000 21.06 0.00 34.41 3.09
2549 2631 0.963962 TTGGTGAGGACAGGACGTAC 59.036 55.000 0.00 0.00 0.00 3.67
2594 2676 5.565592 TTGACCATGTTCTGACATATTGC 57.434 39.130 0.00 0.00 44.55 3.56
2600 2682 4.622260 TGAGATTGACCATGTTCTGACA 57.378 40.909 0.00 0.00 40.71 3.58
2701 2783 3.384789 TGTATCTCAGGAAGGACAATCGG 59.615 47.826 0.00 0.00 0.00 4.18
2714 2796 4.819105 TTGGGTGTAGGTTGTATCTCAG 57.181 45.455 0.00 0.00 0.00 3.35
2735 2817 4.040952 GCTTATGAGGATAGGTGTGTGGAT 59.959 45.833 0.00 0.00 0.00 3.41
2746 2828 3.928754 AGTGACTGGGCTTATGAGGATA 58.071 45.455 0.00 0.00 0.00 2.59
2756 2838 4.649218 ACACAATTTAAAAGTGACTGGGCT 59.351 37.500 23.11 4.20 37.05 5.19
2874 2956 8.673711 GTGTTCCTGTGCTAAAACATATAATCA 58.326 33.333 0.00 0.00 34.45 2.57
2878 2960 7.620880 AGAGTGTTCCTGTGCTAAAACATATA 58.379 34.615 0.00 0.00 34.45 0.86
2948 3030 9.532697 GTTGACGTATTAAAACAATGTTCGTAT 57.467 29.630 7.98 1.47 0.00 3.06
3061 3143 3.791973 TTCATTGTTTTTGTGCCGTCT 57.208 38.095 0.00 0.00 0.00 4.18
3062 3144 4.092091 TGTTTTCATTGTTTTTGTGCCGTC 59.908 37.500 0.00 0.00 0.00 4.79
3159 3241 2.277756 CTAGGGCGCGTGTACGTC 60.278 66.667 8.43 0.00 42.22 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.