>input_sequence_56892
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----------------------------------------------------------------------------GTAT
AAAAAACTGCTGCATCAGCACAAGGAGAGAAGGATCAAGCAATAAAAAT-CCAAAAAAAACATCTTTTTGTTTTAGGGGA
CTACCCTATCTATTTCGGTCTGTGTCTAAAAAAAG----AATCTATTTCGTTCCGGTCCGTCCGGTCCAGGAGGCACGAG
TCGCCGAGTCGGCATCGCGTTCCACCGGAATTCGAATTGGGAAGCCGTTTCCGACCGGAGGGCGCGCACGCGCCGCCCAG
CCGGC--CTACATATAGCG-CACCGCACGCCGATTGACCAACACCAGACCCGCAATCATCTGC-ACGTT------CGGAT
CCTAGGATGGCAGC-AATGGCGATGCCGAAGCACGTCGCGGACGGCGCAGT---------AGTCGACCGCCGGCTCGACG
CGACCACGATATGCTTCTCCGAGGAGCCCGCGCCGGCAGCCTCCGACAGCGGCAGCCCCCGGTTCGCCCTGCGCGTGACG
TGCAGCGTGACGCGGTCCCTGGAGTTCCGCAGGAGCGGCCGGCGCCCGAAGGTGGTGCTGCAGAAGTACACCAAGGC---
----CGACAGCGACTCCGCCGTAACGCTCCCCGTCGGCGACCTGTCCGTGCTACAGAGCGACGGCGCCTGCCAGGGGGCC
CTCCGCGGGATGCTGGCGGAGCTGCGTCAGCTCCGGGAGCTCCACCTCGACGAGGACGAGTGGGACGCCGTCGTCCCCGC
GGACATCGTCCCGCAGATCGTCCGCGTGGCGCGCGGCGACGACGCCAAGGACGGCGGCTTCACTTTCTGCTTCGCGATGA
AGGTGCACCGGCGGATCATACACGGCGAGGAGGCCCTGCTGATGGCGTGCAAAGAGAGGGA------GCTGGACCTGGAC
GGCGCCGGGACGACGGACGACTGCGCGATCTGCCTGGATGGCCTGGAGGGAGAGCCCGCCGTGCAGCTGCCGGGTTGCCC
GCACGCGTTCCACCGCCGGTGCATTTCCACGTGGTTCTCCAAGAAGACGACGTGCCCCATGTGCCGGGATGACGT--TAG
GCTCTGTGCCCTGCGGAAGTTTCTGAACCTGTAGAGTGTAGTGTACCGTAGAAACGTAT--TATGACTCGAGGGCTGCCC
AGCAGA---TTGGATAAAGTTTTCGTGTACATAACTACTGGTAGTAGTAGTACTTGATCTGAAAAACATCAAAATAACTC
CTGTTCTTCCCTGTGGTTGCTGCTTGTGCCGCACTTCGCTGTCTACCTTTTTTTGAGGGGTATTTAAAAAGA--------
--------------------------------------------------------------------------------
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--------------------------------
>chr2A_1_TraesCS2A01G511100
TATGAGCCGGCCGAGACTCTGTAGGCCACCAGGCGTCAACCCGTGTATATAAGGGGACGACCCGGTGGCGGTTTAGGGCA
AGAAACAACCAAGTCGATAACCAAGCCGGCGAGTTAACCCTCTTGGAGATCGAAACCTCAGCAATACCAATCCCAACTAG
ACGTAGGCTTTTACCTTCATCGTAAGGGGCCAAACTAGTATAAAAACTCTCTCGTGTCCTTTGTGCCGATTAACCCCTTT
AACCTTCCTAGTGCGATGGCCCTACGACTAGGTCCTTGCTCTAGGACATCTGCCGTGACAACTCCACGACAGTGAGCAAA
GGGCATTGCTAGCCAGCCGCCACCTACCCAAAAA-GCTAGGG-TT-----CCTC-TGCCTCGGCCGGCACCGGCGTTGGT
TCTCTT-GTTTCCCGTGGCCTT----AGGGCCATGAGGGCGGAGTGGATCCCGGCCCTTACCGGTGGGAGGGCTCCGTTT
TTAGATCTTTCTTCGAGATT----TGTTAGGGTTTGTGTACTACTCCAGAAGGCGAGACGACGGCGGCTCACTGAAAATG
GAATAAAGGTCTCCCCGCCTAACCCTTATTCCGGTGATGCGTCTAGCTTCGTCGGTGGGCCTGTAGAGGTGTGTCTCCGA
TGGATTTGC------TCGGATCTGTTCGT---CGCTCGACTTTGTTCATGTGTTTTCAGGTTGGATCCTTCTTATCTACA
CTC-TTCATCGGCGGCGGTTCCT-GTTCTGCTGCGTTGGTTCTATGGGGCCTTAGCACGACGACTTCCCGATTGTCTACT
ACAACAAGGTTTGTCCGGCTCCGGCGAGAGAGGGGCGATGACAGCGGCACACCTTCGGCTCGTTTCAGTGCTTGTAGTCA
CCGCTAGGTGGTTTACGAATCTGGATATAATTTTTATTATTTCTAGTGTTTGTTGTACTAACATGATTGAAGATGAATAG
ATTGAAAGTTTATAAAAAAAACCGAC--------GTACAGAATTCGAAAGAGCAACAACCAACGACCAGAAACAAAGTAT
AAAAAACTGCTGCATCAGCACAAGGAGAGAAGGATCAAGCAATAAAAAT-CCAAAAAAAACATCTTTTTGTTTTAGGGGA
CTACCCTATCTATTTCGGTCTGTGTCTAAAAAAAG----AATCTATTTCGTTCCGGTCCGTCCGGTCCAGGAGGCACGAG
TCGCCGAGTCGGCATCGCGTTCCACCGGAATTCGAATTGGGAAGCCGTTTCCGACCGGAGGGCGCGCACGCGCCGCCCAG
CCGGC--CTACATATAGCG-CACCGCACGCCGATTGACCAACACCAGACCCGCAATCATCTGC-ACGTT------CGGAT
CCTAGGATGGCAGC-AATGGCGATGCCGAAGCACGTCGCGGACGGCGCAGT---------AGTCGACCGCCGGCTCGACG
CGACCACGATATGCTTCTCCGAGGAGCCCGCGCCGGCAGCCTCCGACAGCGGCAGCCCCCGGTTCGCCCTGCGCGTGACG
TGCAGCGTGACGCGGTCCCTGGAGTTCCGCAGGAGCGGCCGGCGCCCGAAGGTGGTGCTGCAGAAGTACACCAAGGC---
----CGACAGCGACTCCGCCGTAACGCTCCCCGTCGGCGACCTGTCCGTGCTACAGAGCGACGGCGCCTGCCAGGGGGCC
CTCCGCGGGATGCTGGCGGAGCTGCGTCAGCTCCGGGAGCTCCACCTCGACGAGGACGAGTGGGACGCCGTCGTCCCCGC
GGACATCGTCCCGCAGATCGTCCGCGTGGCGCGCGGCGACGACGCCAAGGACGGCGGCTTCACTTTCTGCTTCGCGATGA
AGGTGCACCGGCGGATCATACACGGCGAGGAGGCCCTGCTGATGGCGTGCAAAGAGAGGGA------GCTGGACCTGGAC
GGCGCCGGGACGACGGACGACTGCGCGATCTGCCTGGATGGCCTGGAGGGAGAGCCCGCCGTGCAGCTGCCGGGTTGCCC
GCACGCGTTCCACCGCCGGTGCATTTCCACGTGGTTCTCCAAGAAGACGACGTGCCCCATGTGCCGGGATGACGT--TAG
GCTCTGTGCCCTGCGGAAGTTTCTGAACCTGTAGAGTGTAGTGTACCGTAGAAACGTAT--TATGACTCGAGGGCTGCCC
AGCAGA---TTGGATAAAGTTTTCGTGTACATAACTACTGGTAGTAGTAGTACTTGATCTGAAAAACATCAAAATAACTC
CTGTTCTTCCCTGTGGTTGCTGCTTGTGCCGCACTTCGCTGTCTACCTTTTTTTGAGGGGTATTTAAAAAGAAAAAAACG
ATAAAGGATTAATTCATTTTTTATAGCCAGTTCCTTAATAAGTGAATGGGACTCCCTGGACCGGTTAGTTTTCTTTGTTC
AATGGGTTGTTTATCCTATTTCAACTTTTTATATTCATTTTCCTTTAACTTCTGGTTCTTTCCTATTTTTGTTTTATATT
TCTTTTATTTTCACTAGCAAACATGTTTGTGCCTTGCAACGATAGAGAAAAATTAAATGCTCCAAGCGCAATAAGAACGA
TTCCACCCTTTTACAAGTCCACGTTATATATTTAAACACATTTGCCTCACTTGTGTTGTGCTTACCCTCCGTACGTCCTG
TCCTCACCAACGATGGCCGCGATGTCCACCTAAGCGCAATATGTCAGAACATGGTCAATCTCAAGGATGATATCGATCAT
CGCAGTGCCATCACAAGCGAATGTTTAATACTTTTAAAATTAATATCCCCGAGTTGGACGTGCCGATTGTCCTTCCTGAG
ATACAACCTACACCCAATCCACACACCTATCCTCATAAGCCCAGTCACTTTTAAATTGTGTATTTGTTTTATGCATCAAC
AATGTTTTTTAAAACACATAAAACTTTTTTAAATCACATGCACTTCTATAAAGAGCATGAATATTTTTAAAATTATGATT
ATATGTTTTAGCACAGGAACACTCTTTAAAATTACATGAACATATAAAAAGGATGAACATTTTTAAATTATACGAACATT
GTTTTAATACGTCAACATTTTTTACTAATATTACAAAAATATTTTAAAATACATGAACTATTTTTAAAACATAACATTTT
TCAAAAGTCAGATACGCATTTTAGACGGCACAAAAACAATGAAAACATGTTAACACCTTTTGTGAGTAACTAACTACTCG
TATTGACTGAGTTTGGATTGTAGCATGAGTGGTCAGGGTAGACGTACACGCGCCCTAGTTTTCTTGATATAGTGAACGGG
AGGAGAGCTATTCATATGGTGCCTGGTTGCTG
>chr2D_312
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GTGAGCAAA
GGGCATTGCTAGCCAGCCGCCGCCTACCCAAAAA-GCTAGGG-TT-----CCTC------CCGCCGCCGCTGGCGTCGGT
CCGCCTCGTCTTCCGTGGCCTT----AGGGCCATAGGGGCGGAGTGGATCCCAGCCCTTGCCGATGGGAGAGCTCCGTTT
TTAGATCTTTCTTCAAGATTTAATTGTTAGGGTCTGTGTCCTTCTCAAGAAGGCGAGACGGCGGCGGCTCCCTGAAAATA
GAATAAATGTCTCCCCGCCTAGCCCCCGTTCCGGTGATACGTCTAGCGTCGTTGGTGGACGTGTGGAGGTGTGTCTCCGG
TGGATTTGC------TTGGATCTGTTCGT---CGTCCGTCTTTATTTGTATGTCTTCAGGTTGGATCCTTCTTATCTACA
CTC-TTCATGGGCGACAGTTGTT-GTTCTGGTGCGTTGGTTTTATGGGGC-TTAGCACGACGACTTCTCGACTGTCTACT
ACAACAAGGTTTGCTCAGCTCCGGCGAGGGAGAGGCGATGACAGCGGCGCGCCTTCGGCTCGTTTCAGTGCTTGTAGTCG
TCGCTAGGTGGTCTACGAATTTGGATGTAATTTTTATTTTTTCTAGTGTTCGTTGTACTAACATGATTGAAGATGAATAG
ATCGAAAGTTTATCAAAAAAAAGAGGGGAACCCAGTACAGAATTCGAAAGAGCAACAACCAACGACCAGAAACAAAGTAT
AAAAAACTGCTGCATCAGCACAAGGAGAGAAGGATCAAGCAATAAAAATCCCAAAAAAAACATCTTTTTGTTTTAGGGGA
CTAGCCTATCTATTTCGGTCTGTGTCTAAAAAAATAAATAATCTATTTCGTTCCGGTCCGTTCGGTCCAGGAGGCA----
----CGAGTCGGCATCGCGTTCCACCGGAATTCAAATTGGGAAGCCGTTTCCGACTGGAGGGCGCGCACGCGCCGCCCAG
CCGGC--CTACATATAGCG-CACCACACGCCGATTGATCAACACCAGACCCGCAATCATCTGC-ACGTT------CGGAT
CCTAGGTTGGCAGC-AATGGCGATGCCGAAGCACGACGCGGACGGCGCAGT---------AGTCGACCGCCGGCTCGACG
CGACCACGATATGCTTCTCCGAGGAGCCCGCGCCGGCAGCCTCCGACGGCGGCAGCCACCGGTTCGCCCTGCGTGTGACG
TGCAGCGTGACGCGGTCCCTGGAGTTCCGCAGGAGCGGCCGGCACCCGAAGGTGGTGCTGCAGAAGTACACCAAGGC---
----CGGCTGCGACTCCGCCATAACGTTCCCCGTCGGCGACCTGTCCGTGCTACAGAGCGACGGCGCCTGCCAGGGGGCC
CTCCGCGGGATGCTGGCGGAGCTGCGTCAGCTCCGGGAGCTCCACCTCGACGAGGACGAGTGGGACGCCGTCGTGCCCGC
GGACATCGTGCCGCAGATCGTCCGCGTGGCGCGCGGCGAGGACGCCAAGG---ACGGCTTCACTTTCTGCTTCGCGATGA
ATGCGCACCGGCGGATCATACACGGCGAGGAGGCCCTGCTGATGGCGTGCAAAGAGAGGGA------GCTGGACCTGGAC
GGCGCCGGGACGACGGACGACTGCGCGATCTGCCTGGATGGCCTGGAGGGAGAGCCCGCCGTGGAGCTGCCGGCTTGCCC
GCACGCGTTCCACCGCCGGTGCATTTCCACGTGGTTCTCCAAGAAGACGACGTGCCCCATATGCCGGGATGACGT--TAG
GCTCTGTGCCCTGCGGAAGTTTTTGAACCTGTAGAGTGTAGTGTACCGCAGAAACGTA-----TGACTCGAGGGCTGCCC
AGCAGCTTTGTGGATAAAATTTTCGTGTACATAACTAGTAGTAGTTTGGATATAAGCTTCATG-----------TAACTC
CTGTTCTTCCCTGTGGTTGCTGCTTGTGCCGGACTTCGCTGTCTACCTTTTCTTGAGGGGTATTTAAAAAAAAT-----G
ATAAAGGATTAATTCATTTTTTATAGCCAGTTCCTTAATAAGTGAATGGGACTCCCTGGACCGGTTAGTTTTCTTTGTTC
AATGAGTTGTTTATCTTATTTCAACTTTTTATATTCGTTTTCCTTTAACTTCTGGTTCTTTCCTATTTTTGTTTTATATT
TCTTTTATTTTCACTAGCAAACATGTTCGTGCATTGCAACGATAGAGAAAAATTAAATGCTCCAAGCGCAATCAGAACGA
TTCCACCCTTTTACAAGTCCACGTTATATATTTAAACATA-TTGCCTCACTTGTGTTGTCCTTACCCTCCATACGTCCTG
TCCTCACCAACGATGGCCGCGATGTCCACCTAAGCACAATACGTCAGAACATGGTCAATCTCAAGGATGATATCGATCAT
CGCAGTGCCAT--CAAGCGAATGTTTAATACTTTTAAAATTAATATCCCTGAGTTGGACGTGACGATTGTCCTTCATGAG
ATACAACCTACACCCAGTCCACACACCCATCCTCATATGCCCAGTCACTTTTAAATTGTGTATTTGTTTTATGCATCAAC
AATGTTTTTTAAAACACATAAAACTTTTTTAAATCACATGCACTTCTATAAAGAGCATGAATATTTTTAAAATTACGATC
ATATGTTTTAGCACAGGAACACTCTTTAAAATTACATGAACATATAAAAAGGGTGAACATTTTTAAATTGTACGAACATT
GTTTTAATACGTCAACATTTT-TACTAATATTACAAAAATATTTTAAAATACATGAACTATTTTTAAAACATAACATTTT
TCAAAAGTCAGATACGCATTTTGAACGGCACAAAAACAATTAAAACATGTTAACACCTTTTGTGAGTAACTAACTACTCG
TATTGACTGAGTTTGGATTGTAGCATGAGTGGTCAGGGTACACGTACACGCGCCCTAGTTTTCTTGATATAGTGAACGGG
AGGAGAGCTATTCATATGGTGCCTG-------
>chr2B_329
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------CTAGCCAGACGCCGCCTACCCAAAAA-GCTAGGG-TT-----CATT-TGCCTT--CTGCCGGCGCAGCCGGC
CCGCCTCGTCTCCCATGGCCTT----AGGGTCATGGGGGCAGACTGGATCCCGGCTCTTGCCGGTGGGAGGGCTTCATTT
TTAGATTTTTTTT--AGGT----TTGTTAGAGTTTGTGTCTTACTCAGGAAGGCGAGACGGCGGTGGCTCCCTGAATATG
GAATAAAGGTCTGCCTACCTAGCCCCCTTTCCCATGAAGCATCTAGCATCGTCGGTGGGCGTGTGGAGGTGTGTCTCCGC
TGGGTCTATCTTTCG-TGGATCTGTTCGGATCTGTTCGTCTTTGTTTGTGTGTCTTTAGGTTGGATCCTTCTTATCTACA
CTC-TTCATCGGCGGCAGTTGCT-GTTCTGGTGCGTTGGTTCTATGGGACCTTAGCACGACGACTTCTCAACTGTCTACT
ACAACAAGGTTTGCCTGGCTCCCATGAGGGAGGGACAATGACAGCGGCACGCTTTCGGCTCGCTTCAGTGCTTGTAGTCA
TTGGTAGATGGTCTACGGATCTAGATGAATTTTTTTATTTA--TAGTATTCCTTGTACTATCATGATTGAAAATGAATAG
ATCGAAGTTTATTAAAAAAA------------------------------------------------------------
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>chr4A_329
--------------------------------------------------------------------------------
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--------CTAGCCAGCCGCCTCCTACCTAAAAAAACTAGGGTTTCTCTGCCTC------CCGCCGGCGCCGGCGTTGGT
CCGCCCCGTCTATCGTGGCCTT----AGGGCCATGGGGACAGAGTGGATCCCGGTCCTTGCCGGTGGGAGGGCTCCGTTT
TTAGATCCTTTTTCGAGAT----TTGTTGGGGTTTGTGTCCTACTCAGGAAGGCGAGATGGCGGCGACTCCCTGAAGGTG
GAATAAAGGTCTCCCTGCCTAGTCCCCGTTCCGGTGATGCGTCTAGCATCGTCGGTGGGCGTGTGGAGGTGTGTCTCTGG
TGGATTTGC------TCGGATCTGTTCGT---CGTTCGTCTTTGTTCGTGTGTCTTCAGGTTGGATCCTTCTTATCTACA
CTC-TTCATCGGCGGCAGTTGCT-GTTCTGGTGCGTTGGTTCTACGGGGCCTTAGCACGACGACTTCCCGACTGTGTACT
ACAACAAGGTTTGCCCGGCACCGGCGAGGGAGGGGCGATGACAGCGGCGCGCCTTCGGCTCGCTTCAGTGCTTGTAGTCG
CCGCTAGGTGGTCTACAGATCTGGATGTAATTTTTATTATTTCTAGTGTTCGTTGCACTATCATAATTGAGGATGAATAG
ATCGGAAGTTTAT-------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>chr7B_329
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------CTAGCCAGCCGCCGTCT-CCTAAAAA-GCTAGGG-TTCTTTGCCTC------CCGCCAGCGCCGGTGCCGGT
CCGTCCCGACTCCGATGGCCTTAGGGAGGGTCATGGAGGCGGAGTGGTTCGGGGCCCTTGCCGACGGGAGGGCTCCGTTT
TTAGATCTTTTTTCGAACT----TTGTTAGGATTTGTGTCCTACTCAGGAAGACGAGACGGCGGCGGCTCCCTGAAGATG
GAATAAAGGTCTTCCCGCGTAGCCCGCGTCCCGGTGATGCGTCTAGCATCATCGGTGGGCGTGTGGAGGTGTGTCTCTGG
TGGATTTGC------TCGGATATGTTCGC---CGTTCGTCTTCGATCGTGTGTATTCAAGTTGGATCCTTTTGATCTACA
CTC-TTCATCTGCGGCGGTTGCT-GTTCTGGTGCGTTGGTTCTATGGGGCCTTAGCACGACGACTTCCCGACTGTCTACT
ACAACAAGGTTTGCCCAGCTCCGGCTAGGGAGGGGCGATGACAGCGGCGCGCCTTCGGCTCGCTTCAGTGCTTGTAGTCG
TCGCTAAGTGGTCTACGGATCTGGATGTAATTTTTATTATTTCTAGTGTCCGTTGTACTACCATAATTGAAGATGAATAG
AGCGAAAGT-----------------------------------------------------------------------
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--------------------------------
>chr1D_329
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------CTAGCCAGCCGCCGCCTACCCAAAAA-GCTAGGT-TCCTCTGCCTC------CCGTCGCCGCCGGCGCCGGT
CCGCCCCGTCTTCCGTGGCCTT----AGGGTCATGGGGGCGGAGTGGATCCCGACCCTTGCTAGTGGGAGGGCTTCGTTT
TTAGATATTTTTTCGAGAT----TTGTTAGGGTTTGTGTCCTACTCAGGAAGGCGAGACGGCGGCGGCTCCCTGAAGATG
GAATAAAGGTCTCCCTGCCTAGCCCCCATTCCGGTGATGCGTCTAGCATCGTCGGTGGGCGTGTGGAGGTGTGTCTTCGG
TGGATCTGT------TCGGATCCGTTCGT---TGTTCGTCTTTGTTCGTGTGTCTTAAGGTTGGATCCTTTTTATCTACA
CTC-TTCATCGGCGGCGGTTGCT-GTTCTGGTGCATTGGTTCTAAGGAGCCTTAGTACGACGACTTCCCGACTGTCTACT
ACAACAAGGTTTGCCCGGCTCCGACAAGGGAGGAGCGATGACAATGGCGTGCCTTCGGCTCGCTTCAGTGCTTGTA----
--------------------------------------------------------------------------------
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--------------------------------
>chr4A_330
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------TAGCTAGCTGCCGCCTTCCCAAAA---CTAAGG-TTCTTTGCCTC------TCACCGGCGCCGGCGCCGGT
CCGTCCCGTCTTCAGTGGCCTT----AGGGCCATGGAGGCGGAGTGGATCTCGGCCCTTGCCGGTGGGAGGGCTCCGCTT
TCATATCTTTTTTCGAGCT----TTGTTAGGGTTTGTGTCCTGCTCAGGAAGGCGAGACGATGGCGGCTCCCTGAAGATG
AAATAAAGGTCTCCCCGTCTAGTCCCCGTTCCGGTGATGTGTGTAGCATCATCGGTGGGCATGTGGAGGTGTGTCTTTGG
TGGATTTGC------TCTGATCTGTTCGT---CGTTCGTCTTTGTTCGTGTGTCTTCAGATTGGATCCTTTTGATCTACA
CTC-TTCATCTGTGGCGGTTGCAAGTTCTGGTGCGTTGGTTCCATGGGGCCTTAGCACGACGACTTCCTGACTTTCTACT
ACAACAATGTTTGCTCGGCTCTGTCGAGGGAGGGGCGATGACAGCGGCGCGCCTTCAGCTCGCTTCAGTGCTTGTAGTCG
TCGCTAGGTGGTCTACGGTTCTGGATGTAATTTTTATTATTTTTAGTGTCCGTTGTACTACCATGATTGAAGATGAATAG
ATTGAAAGTTT---------------------------------------------------------------------
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--------------------------------
>chr2D_333
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------CCAGCCGTCGCCTATTGAAAAA-ACTAGGG-TT-----TCTC-TGCCTC-----CCGCAGGCGTCGGT
CCGCCCCGTCTACCGTGGCCTT----GGGGCCGTGGGGACGGAGTGGATCCCGGCCCTTGCCAGTGGGAGGGCTCCGTTT
TTAGATCCTTTTTCAAGAT----TTGTTATGGTTTGTGTCCTACTCAGGAAGGTGAGACGGCGGCGACTCTCTGAAGATG
GAATAAAGGTCTCCCCGCCTAGTCCCCGTTCCGGTGACGCGTCTAGCATCGTCGGTGGGCACGTGGAGGTGTGTCTATGG
TGGATTTGC------TCGGATCTGTTCGT---CGTTCGTTTTTGTTTGTGTGTTTTCAGGTTGGATCCTTCTTATCTACA
CTC-TTCATCGGCGGCGGTTGTT-GTTCTGGTGCGTTGGTTCTACGGGGCCTTAGCAGGACGACTTCCCGACTGTCTACT
ACAACAAAGTTTGCCCTGCTCCGGCGAGGGAGAGGCGATGACAGCGGCGCGCCTTCGGCTCGCTTCAGTGCTTGTAGTCG
TCGCTAGGTGGTCTACGGATCTGGATGTAATTTTTATTATTTCTAGTGTTCGTTATACTACCATGATTGAAGATGAATAG
ATAGGAAGTTTAT-------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>chr2A_348
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------CCAAAAA-GTTAGGG-TT-----CCTCTTGCCTC-----CCGCCGGCGCCGGT
CCGCCCTAACTCCAGTGGCCTT----AGGACCATGGAGGCGGAGTGGATGTCGACCCTTTCCGGTGGGAGGACTTCGCTT
TTAGATCTTTTTTCGAGTT----TTGTTAGGATTTGTGTCCTACTCAGGAAGGCAAGACGGCGTCGACTCCCTGAAGATG
GAATAAAGGTCTCCCCGCCTAGCCCCCATTCCGGTGATGCGTCCAGCATCGTCGGTAGGCGTGTGGAGGTGTCTCTCCGG
CGGATCTGTCTTTGCTCGGATCTGTTCAT---CGCTCGTCTATGTTCCTGTGTCTTCAGGTTGGATCCTTCCGATCTACA
CTC-TTCATCGGCGGCAGTTGCT-GTTCTGGTGCATTGGTTCTATGGGGCCTTAGCACGACGACTTCCTGACTATCTACT
ACAACATGGTTTGCCAGGCTCCGGTGAGGAAGGGGGGATGATAGCAGCGTGCCTTCAGCTCGCTTCAGTGTTTGTTGTCG
TCGCTAGGTGGTTTATGGATCTGAATGTAATTTTTATTATTTCTAGTATTCGTTGTACTACCAAGATTGAAGATGAATAA
ATTGAAAGTTT---------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>chr5A_353
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------AA-GCTAGGG-CCCTCTGCCTC------CCACCGGCGTCGGCGCCAGT
CCGTTTCGTCTTCGGTGGCCTT----AGGGCCATGGAGGCAGCATGGATTTCGGCCCTTGCCGGTGGGAGGGCTCCATTT
TTAGTTTTTTTTTTGAACT----TTGTTAGGGTTTGTGTCCTGCTCAGGAAGGCGAGATGGCGGCGGCTCCCTTAAGATG
CAATAAAGGTCTCCCCGCCTAGCCTCCATTCCGGTGGTGCGTACAACATTATCGGTGGGCATGTGGAGGTGTGTCTCTGG
CGGATCTGTCT----TCGAATCTATTCGT---CGTGCGTCTTCGTTCGTGTGTCTTCAGGTTGGATCCTTTTGATCTACG
CTCTTTCATCTGCGGCGGTTGCT-GTTCTGGTGCGTTGGTTCTATGGGGCCTTAGCACGATGACTCCC-GACTATCTAC-
----CAAGGTTTGCCCGGCTCCGGCGAGGGAGGGGCGATGACAGCGGCGCGCCTTCGGCTCGCTTCAGTACTTGTAGTCG
TCGCTAGGTGGTCTACGGACCTGGATGTCATTTTTAATATTTCTAGTGTTCGTTATACTACCATGATTGAGGATGAATAA
ATTGAAAGTTT---------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>chr3A_1221
--------------------------------------------------------------------------------
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-------------------------------------------------------------GCGCGCACGCGCCGCCCGA
TCGTCGGCTCCATATAGCACCACCGCCGGCCCAATTACCAATACCACATTCGCAAACATCTGC-GCTTTGCCCTGCAGAT
CCGTGTTTGCCAGCAAACGCCGATGTCGATGCACGCCGCCGCCGCCACCGCGGGGACAGGAGTGAAGCGTCTGCTTGAGC
AGACCACGATCAGTTTCTCAGAGGAGCCCGTGCCGGC---------CGACGCCGGCTACCGGTTCGCGGTGCGCGTGACG
TGCAATATGAAGCAGTCCCTGGAGTTCCGCAGGAGCGGCCAGTGCCCGGACGTCCTCCGCGAGAAGTACATCGAGATTCG
GGGGCGGCAGCGGTTCCGCCACGACGTTCCCCGTCGGCGACCTCTCCGCGCTCCGGAGCGACAGCGCCTGCCGAGGGGCC
CTCCGCGGGATGCAGGTGGAGCTGCCGCAGCTCCGGTCGCTCCACCTCGCCGATGACGAGTGGGACTCCGTCGTGCCCGC
AGACATCGTGCCGCAGATCGTCCGCGTGGCGTGCGGCGACGATGCCAACA---ACGGCTTCACCTTCTGCTTCATGATGA
AGGTCCCCCTCCGGATCATATACGGCAACAAGGCCCTCCTGATGGCGTGCAAGGAGAGGGA------GCCGGGCAGCGAT
GGCACCGAGATGGACGATGACTGCCCGATCTGCCTGGATAGCCTGGATGGAGAGCCCGCCGTGGAGCTGCCTCACTGCAA
GCATGCGTTCCACCGCCGGTGCATTTCCACGTGCTTCTGCAACAAGACGATGTGCCCCTTGTGCGTGGGCGACGT--GAG
GCCCTGTATCCTGCCGGAGTTTCTGGACCTCTAG----------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>chr3D_1221
--------------------------------------------------------------------------------
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-------------------------------------------------------------GCGCGCACACGCCGCCCAA
CCGTTGGCTACATATAGCGCCACCGCCGGCCCAATTACCAATACCACATTCGCAAACATCTGCAGCTTTGCCCTCCAGAT
CCGTGTTTGCCAGCAAACGTCGATGTCGATGCACGCCGCCGCCGCCGCCGCGGGGGCAAGAGTGAAGCGTCGGCTTGAGC
CGACCATGATCTGTTTCTCTGAGGAGCCCGCGCTGGC---------CGAAGCCGGCTACCGGTTTGCGATGCGCGTGACG
TGCAACGTGAAGCAGTCGCTGGAGTTCCGCAGGAGCGGCCAGCGCCCGGACGTGCTCCGGGAGAAGTACATCGGGGC---
----CGGCAACGGTTCCACCACGACGTTCCCCGTCGGCGACCTCTCTGCGCTCCAGAGCGACAGCGCCTGCCGAGGGGCC
GTCCGCTGTATGCTGGCGGAGCTGCCGCAGCTCCGGTCGCTCCACCTCGCCGATGGCGAGTGGGACTCCGTCGTGCCCGC
AGACATCGTGCGGCAGATCGTCCGCGTGGCGCGCGGCGACGACGCCAACG---ACGGCTTCACCTTCTGCTTCGCGATGA
AGGTGCACCTCCGGATCATATACAACAATAAGGCCCTTCTGATGG-----------------------------------
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--------------------------------
>chr3A_1453
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------CGTGAAG
TGCTACGTGAAGCGGTCCCTGGAGTTCCGCGGACGCGGCCAGCCCCCGATCGTGAGGCAACAGCAGTACATCGGTCC---
----AAGCAACGGCTCCGCCATGAAGTTCCTCGTCAGAGACCTCTCCGCGCTCCAGAGCGACGGTGCCTGCCGCTGGGCG
CTCCGCAGGATGCTGGCGAGAATGCCCCAGCTCCGGGTGCTCCGCCTCGCCGACGACGAGTGGGACCGCGTCGTACCCTC
GAACGTGGTGCCGCAGATCGTCCGCGTGGCGTGCAGCGACCGCGCCACCA---GTGGCTTCACCTTCCGCTTCGTCATGG
AGGTGGACCGGCAGTTCATACATGATGAGCAGGCTCTCCTGATGGCGTGCAAGGAGAGGGA------CCTGGGC------
GGCAGCGACAAGCCCGACAACTGCCCGATCTGCTTGGAGGGACTGGATGGAGAGCCCGCCGTGCAGCCGCCGAGGTGCCC
GCACGCGTTCCACCGCCGGTGCATTTTCAGGTGGTTCTGCCAGGCGACGACGTGCCCGATTTGCCGCAGCGACGT--GAG
GATCTGTGCCCTGCCGGAGTTTCT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>chr3D_1453
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------CGTGAAG
TGCTCCGTGAAGCGGTCCCTGGAGTTCCGCGGACGCGGCCAGCCCCCGATCGTGATGCACCAGGCGTACATCGGGCC---
----AAGCAACGGCTCCGCCATGAAGTTCCTCGTCAGAGACCTCTCCGCGCTCCAGAGCGACGGTGCGTGTCGCTGGGCG
CTCCGCAGGATGCTGGCGAGAATGCCCCAGCTCCGGGTGCTCCGCCTTTCCGACGACGAGTGGGACGGCGTCGTACCCTC
GAACGTGGTGCCGCAGATCGTCCGCGTGGCGTGCGGCGACAGCGCCACCC---GCGGCTTCACTTTCCGCTTCGTCATGG
AGGTGGACCGGCAGTTCATACATGACGAGCAGGCTCTCCTGATGGCGTGCAAGGAGAGGGA------CCTGGGC------
GGCAGCGACAGGCCGGACAACTGCCCTATCTGCTTGGAGGGACTGGATGGAGAGCCCGCCGTGCAGCCGCCGAGGTGCCC
GCACGCGTTCCACCGCCGGTGCATTTTCAGGTGGTTCTGCCAGGCGACGACGTGCCCGATTTGCCGCAGCGACGT--GAG
GATCTGTGCCCTGCCGGAGTTTCTTGCTCTGTA----GTAGTGTA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>chr3B_1453
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------CGTGAAG
TGCTCCGTGAAGCGCTCCCTGGAGTTCCGCGGACGCGGCCAGCCACCGATCGTGATGCACCAGGCGTACATCGGGCC---
----AAGCAACGGCTCCGCCATGAAGTTCCTCGTCAGAGACCTCTCCGCGCTCCAGAGCGACGGTGCCTGCCGCTGGGCG
CTCCGCAGGATGCTGGCGAGAATGCCCCAGCTCCGGGTGCTCCGCCTTGCCGACGACGAGTGGGACGGCGTCGTACCCTC
GAACGTGGTGCCGCAGATCGTCCGCGTGGCGTGCGGCGACAGCGCCACCC---GCGGCTTCACCTTCCGCTTCGTCATGG
AGGTGGACCGGCGGTTCATACATGACGAGCAGGCTCTCCTGATGGCGTGCAAGGAGAG------GGACCTGGGC------
GGCAGCGACAGGCCCGACAACTGCCCGATCTGCTTGGAGGGACTGGATGGAGAGCCTGCCGTGCAGCCGCCAAGGTGCCC
GCACGCGTTCCACCGCCGGTGCATTTTCAGGTGGTTCTGCCAGGCGACGACGTGCCCGATTTGCCGCAGCGACGT--GAG
GATCTGTGCCCTGCCGGAGTTTCTTGCTCTGTA----GTAGTGTA-----------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>chr2B_1527
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------ACACCAAGGC---
----CGGCTGCGATTCCGCCATAATGTTCCCTGTCGGCGACCTGTCCACGCTACAGAGCGACAGCGCCTGCCAAGGTGCC
CTCCGCGGGATGCTGGCGGAGCTGGGTCAGCTCCGGGCTCTCCACCTCGACGAGGACGAGTGGGACGCTGTCGTGCCCGC
GGAAATCGTGCCGCAGATCGTCCGCGTGGCGCGCGGCGAGGACGCCAAGG---ACGGCTTCACTTTCTGCTTCGCGATGA
ATGTGCACCGGCGGATCATACACGGCGAGGAGGCCCTGCTGATGGCGTGCAAAGAGAGGGAGCTGGACCTGGAC------
GGCGCCGGGACGACGGACGACTGCGCGATCTGTCTGGATGGCCTGGAGGGAGAGCCCGCCGTGGAGCTGCCGGCTTGCCG
GCACTCGTTCCACCGCCGGTGCATTTCCACGTGGTTCTCCAAGAAGACGACGTGCCCCATGTGCCGCGAAGACGTTATAG
ACTCTGTGCCCTGCGGAAGTTTCTGAACCTGTCGACTGTAGTGTACCGTAGAAACGTACTGTATGACTCAAGGGTAGCCC
AGCAGCTTTTTGGGTAATTTTTTTGTGTACATAACTACTACACCT-GTAATACATGATCTGAAAAACATCAAAAT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
---------------------S---------------------------------------S------S-----------
S-S------S-------------------------S-----------------------S--------------------
---------------------------------------S------S-----------------------S---------
---------------------S---SS--------------------S------------S---S--------------S
--------------------------------------S--------S--------------------------------
--------------------S---------S----------------------------------------S--------
-------------S--------------S---------------------S-----------------------------
--------------------------S-----------------------S-----------------------------
---------------------SSSSS------------------------------------------------------
--------------------------------------------------------------------------------
---S------------------------------S--------------------------S--------------SSSS
SSSS-----------------------------S---------------------S------------------------
--------------------------------------------------------------------------------
------S----------------------------S--------------------------------------------
-----------------------------------------------S---------S----------------------
--------------------------------------------------------------------------------
------S-------------S-----S-----------------------------------------------------
--------------------------------------------------------------------------S-----
---------S----------------------------------------SSS---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
-----S------------S--------------------S-----S---S---S--------------------------
-------------------------------S-------------------S------------------S--SSSSSS-
--------------------------------------------------------------------------------
----S----------S--------------------S-------------------------------------------
---------------------------S----S---------------------------------------S-------
--------------------------------------S-S------------------S----------S---------
-----------------------------------S-----S--------------------------------------
-----------SS------------------------------------S------------S------------S----
----------------S----------S---------S------------------------------------------
---------------------------------------------------------------------------S---S
----------------------------------------------------S----------------S----------
---------------------S----------------------------------------------------------
----------------------SS----------------S---------------------------------------
----------------------------------------S---------------------------------------
-------------------------SSSSSSS
>forward_688
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TCGTCGCTCGACTTTGTTCA--------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------
>reverse_2631
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------GTACGTCCTG
TCCTCACCAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
