Multiple sequence alignment - TraesCS2A01G506100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G506100 chr2A 100.000 2598 0 0 1 2598 734103398 734100801 0.000000e+00 4798
1 TraesCS2A01G506100 chr2D 90.449 1958 74 36 707 2598 600435057 600433147 0.000000e+00 2475
2 TraesCS2A01G506100 chr2D 87.644 348 21 5 233 572 600435586 600435253 4.060000e-103 385
3 TraesCS2A01G506100 chr2D 92.857 238 10 4 4 238 600435849 600435616 3.200000e-89 339
4 TraesCS2A01G506100 chr2B 89.433 1959 89 40 707 2598 730647217 730645310 0.000000e+00 2362
5 TraesCS2A01G506100 chr2B 89.855 345 18 4 233 572 730647743 730647411 6.640000e-116 427


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G506100 chr2A 734100801 734103398 2597 True 4798.000000 4798 100.000000 1 2598 1 chr2A.!!$R1 2597
1 TraesCS2A01G506100 chr2D 600433147 600435849 2702 True 1066.333333 2475 90.316667 4 2598 3 chr2D.!!$R1 2594
2 TraesCS2A01G506100 chr2B 730645310 730647743 2433 True 1394.500000 2362 89.644000 233 2598 2 chr2B.!!$R1 2365

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
582 660 0.040425 CGCTGTTTGTACCAGTTGCC 60.04 55.0 0.0 0.0 32.41 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2488 2717 0.103572 GCAATAATGGTGCCAGCAGG 59.896 55.0 1.98 0.0 35.91 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 0.743688 AGCGAGAGATCACGAGCAAT 59.256 50.000 13.13 0.00 31.68 3.56
55 56 3.379240 CGAGAGATCACGAGCAATCAAT 58.621 45.455 0.00 0.00 31.68 2.57
141 143 2.796483 TAGTGGTGTCATGGCACGGC 62.796 60.000 23.35 17.65 40.08 5.68
216 220 3.423154 GGGTCAAACGCCGAGCAG 61.423 66.667 0.00 0.00 32.48 4.24
241 279 2.665185 GGCAACCACGTCGCTTCT 60.665 61.111 0.00 0.00 0.00 2.85
365 414 0.677731 TCTATGCCCAGCAACAGCAC 60.678 55.000 0.00 0.00 43.62 4.40
366 415 1.660560 CTATGCCCAGCAACAGCACC 61.661 60.000 0.00 0.00 43.62 5.01
436 485 3.702330 CTCCGCAAGATAACGATGTGTA 58.298 45.455 0.00 0.00 43.02 2.90
442 491 8.895737 TCCGCAAGATAACGATGTGTATATATA 58.104 33.333 0.00 0.00 43.02 0.86
443 492 9.678941 CCGCAAGATAACGATGTGTATATATAT 57.321 33.333 0.00 0.00 43.02 0.86
461 510 6.656314 ATATATGTGTGTTTGTGTGTACCG 57.344 37.500 0.00 0.00 0.00 4.02
468 517 1.208009 TTTGTGTGTACCGTCGTCGC 61.208 55.000 0.00 0.00 35.54 5.19
485 534 1.546476 TCGCTCTCCTTTTCTCACCTC 59.454 52.381 0.00 0.00 0.00 3.85
554 604 3.379688 GGATTTCCATGTCAGCTCTTTCC 59.620 47.826 0.00 0.00 35.64 3.13
564 614 1.470098 CAGCTCTTTCCATGGGTTTCG 59.530 52.381 13.02 0.00 0.00 3.46
572 622 0.673437 CCATGGGTTTCGCTGTTTGT 59.327 50.000 2.85 0.00 0.00 2.83
573 623 1.883275 CCATGGGTTTCGCTGTTTGTA 59.117 47.619 2.85 0.00 0.00 2.41
575 625 1.310904 TGGGTTTCGCTGTTTGTACC 58.689 50.000 0.00 0.00 0.00 3.34
582 660 0.040425 CGCTGTTTGTACCAGTTGCC 60.040 55.000 0.00 0.00 32.41 4.52
583 661 0.313987 GCTGTTTGTACCAGTTGCCC 59.686 55.000 0.00 0.00 32.41 5.36
587 665 2.303175 GTTTGTACCAGTTGCCCTTCA 58.697 47.619 0.00 0.00 0.00 3.02
614 696 5.345702 TGCATGGTACGTATCAGAGTTAAC 58.654 41.667 14.85 0.00 0.00 2.01
615 697 5.126545 TGCATGGTACGTATCAGAGTTAACT 59.873 40.000 14.85 8.13 0.00 2.24
617 699 7.148035 TGCATGGTACGTATCAGAGTTAACTAA 60.148 37.037 14.85 0.00 0.00 2.24
629 711 7.134815 TCAGAGTTAACTAACACGTGTAGAAC 58.865 38.462 23.69 19.23 38.62 3.01
632 714 6.211515 AGTTAACTAACACGTGTAGAACTGG 58.788 40.000 23.69 10.43 38.62 4.00
635 717 1.578583 AACACGTGTAGAACTGGTGC 58.421 50.000 23.69 0.00 0.00 5.01
638 720 1.792949 CACGTGTAGAACTGGTGCTTC 59.207 52.381 7.58 0.00 0.00 3.86
645 728 3.118905 AGAACTGGTGCTTCTGAGAAC 57.881 47.619 0.00 0.00 0.00 3.01
654 737 1.891060 CTTCTGAGAACGTGTGGCGC 61.891 60.000 0.00 0.00 46.11 6.53
655 738 3.414700 CTGAGAACGTGTGGCGCC 61.415 66.667 22.73 22.73 46.11 6.53
670 753 1.798725 CGCCAAATGCTTGCACGAG 60.799 57.895 0.00 0.00 38.05 4.18
673 756 0.804364 CCAAATGCTTGCACGAGCTA 59.196 50.000 11.51 0.00 43.11 3.32
679 762 2.540515 TGCTTGCACGAGCTATTCTAC 58.459 47.619 11.51 0.00 43.11 2.59
680 763 2.166459 TGCTTGCACGAGCTATTCTACT 59.834 45.455 11.51 0.00 43.11 2.57
681 764 3.380320 TGCTTGCACGAGCTATTCTACTA 59.620 43.478 11.51 0.00 43.11 1.82
683 766 4.261238 GCTTGCACGAGCTATTCTACTAGA 60.261 45.833 6.36 0.00 42.74 2.43
684 767 5.425577 TTGCACGAGCTATTCTACTAGAG 57.574 43.478 6.36 0.00 42.74 2.43
685 768 3.815962 TGCACGAGCTATTCTACTAGAGG 59.184 47.826 6.36 0.00 42.74 3.69
686 769 3.816523 GCACGAGCTATTCTACTAGAGGT 59.183 47.826 0.00 0.00 37.91 3.85
688 771 5.561339 GCACGAGCTATTCTACTAGAGGTTC 60.561 48.000 0.00 0.00 37.91 3.62
689 772 5.761234 CACGAGCTATTCTACTAGAGGTTCT 59.239 44.000 0.00 0.00 0.00 3.01
690 773 6.930164 CACGAGCTATTCTACTAGAGGTTCTA 59.070 42.308 0.00 0.00 0.00 2.10
740 862 3.888523 GTCGTACGTGAAAGCGTTTTTAC 59.111 43.478 16.05 9.20 43.04 2.01
764 887 6.036735 ACGTGTAGGAATATTTCGGTGAATTG 59.963 38.462 0.00 0.00 0.00 2.32
978 1119 0.728466 GAGTTCGACCGAGTCCAACG 60.728 60.000 8.17 0.00 38.36 4.10
1152 1293 2.033911 TCGATGCAGCAAGGGCAA 59.966 55.556 1.53 0.00 45.60 4.52
1236 1377 2.124570 ATCTGCCACCGCATCCAC 60.125 61.111 0.00 0.00 46.11 4.02
1500 1649 1.003108 GTTGGTTTTTGCCCGTTGTG 58.997 50.000 0.00 0.00 0.00 3.33
1501 1650 0.608640 TTGGTTTTTGCCCGTTGTGT 59.391 45.000 0.00 0.00 0.00 3.72
1503 1652 0.868177 GGTTTTTGCCCGTTGTGTCG 60.868 55.000 0.00 0.00 0.00 4.35
1602 1755 2.231618 GCGCGGTGAACTAGCTAGC 61.232 63.158 20.91 6.62 0.00 3.42
1660 1816 2.183811 CTCTGCAGCTCCACTCCG 59.816 66.667 9.47 0.00 0.00 4.63
1674 1830 3.429080 CTCCGCTCTCAGCTCAGCC 62.429 68.421 0.00 0.00 39.60 4.85
1730 1887 2.100631 GGCCCGTCGTCAACATCTG 61.101 63.158 0.00 0.00 0.00 2.90
1742 1899 5.122239 TCGTCAACATCTGCCTAAAAATCAG 59.878 40.000 0.00 0.00 0.00 2.90
1744 1901 6.317857 GTCAACATCTGCCTAAAAATCAGTC 58.682 40.000 0.00 0.00 0.00 3.51
1751 1908 5.354234 TCTGCCTAAAAATCAGTCGAAATCC 59.646 40.000 0.00 0.00 0.00 3.01
1768 1925 5.641709 GAAATCCTCGATCCAACCTTTTTC 58.358 41.667 0.00 0.00 0.00 2.29
1781 1941 3.130633 ACCTTTTTCCATTTTTCGCTGC 58.869 40.909 0.00 0.00 0.00 5.25
1803 1963 4.030977 GCATCAAAAGTTCAATGTCGCATC 59.969 41.667 0.00 0.00 0.00 3.91
1818 1979 4.514816 TGTCGCATCTCACAATGAAAAGAA 59.485 37.500 0.00 0.00 0.00 2.52
1853 2014 1.865865 TTTCTGTTGGTGCGAGAGAC 58.134 50.000 0.00 0.00 0.00 3.36
1941 2121 1.587876 CGTCAAATCGCCGATCCGA 60.588 57.895 0.00 0.00 41.98 4.55
2067 2280 3.335534 GCGCCACGTCGTTGAAGT 61.336 61.111 0.00 0.00 0.00 3.01
2068 2281 2.544359 CGCCACGTCGTTGAAGTG 59.456 61.111 0.00 5.99 40.62 3.16
2069 2282 2.248431 GCCACGTCGTTGAAGTGC 59.752 61.111 7.26 0.91 39.87 4.40
2244 2457 4.248842 CACGTGTGGGTGGGAGCA 62.249 66.667 7.58 0.00 34.27 4.26
2245 2458 4.250305 ACGTGTGGGTGGGAGCAC 62.250 66.667 0.00 0.00 0.00 4.40
2253 2466 2.703798 GGTGGGAGCACGTACGCTA 61.704 63.158 16.72 0.00 44.01 4.26
2320 2539 0.096976 CTGTTCAATTACTGCGGCGG 59.903 55.000 9.78 7.39 0.00 6.13
2321 2540 1.226295 GTTCAATTACTGCGGCGGC 60.226 57.895 9.78 9.68 40.52 6.53
2322 2541 2.745785 TTCAATTACTGCGGCGGCG 61.746 57.895 28.70 28.70 44.10 6.46
2323 2542 3.192230 CAATTACTGCGGCGGCGA 61.192 61.111 36.87 18.75 44.10 5.54
2324 2543 3.192922 AATTACTGCGGCGGCGAC 61.193 61.111 36.87 25.33 44.10 5.19
2373 2592 0.939577 CGGGAGTGTGACACAACGAG 60.940 60.000 18.95 4.29 36.74 4.18
2412 2631 3.755378 GCACAGTTGATTGGAGACTTGAT 59.245 43.478 0.00 0.00 0.00 2.57
2426 2648 1.521450 CTTGATGGCCATGGATCGCC 61.521 60.000 26.56 10.10 45.92 5.54
2450 2672 2.103537 CAGCATGACTGTCATCCACA 57.896 50.000 19.89 0.00 41.86 4.17
2451 2673 1.736126 CAGCATGACTGTCATCCACAC 59.264 52.381 19.89 7.96 41.86 3.82
2480 2709 8.507229 ACAGCATGGAAATTGGTAGACCAGAT 62.507 42.308 0.89 0.00 44.77 2.90
2489 2718 0.745468 GTAGACCAGATCGACCACCC 59.255 60.000 0.00 0.00 0.00 4.61
2490 2719 0.629596 TAGACCAGATCGACCACCCT 59.370 55.000 0.00 0.00 0.00 4.34
2491 2720 0.972983 AGACCAGATCGACCACCCTG 60.973 60.000 0.00 0.00 0.00 4.45
2507 2736 0.103572 CCTGCTGGCACCATTATTGC 59.896 55.000 0.00 0.00 39.41 3.56
2520 2749 4.158949 ACCATTATTGCTTCCCGGTAAAAC 59.841 41.667 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.496927 GGTACGTACGTGCCGGGG 62.497 72.222 34.34 0.00 40.77 5.73
51 52 2.032302 CGTTCGTTGGTTGGTTGATTGA 59.968 45.455 0.00 0.00 0.00 2.57
55 56 1.722677 GCGTTCGTTGGTTGGTTGA 59.277 52.632 0.00 0.00 0.00 3.18
100 101 3.987187 CGTATGGTACGTGGTCGC 58.013 61.111 0.00 0.00 46.41 5.19
231 235 1.136984 GATCCGTGAGAAGCGACGT 59.863 57.895 0.00 0.00 33.66 4.34
277 315 0.463833 GCGAGGGTTGAATAGTGGGG 60.464 60.000 0.00 0.00 0.00 4.96
365 414 2.110967 CAGATCGGGCACAGCTTGG 61.111 63.158 0.00 0.00 0.00 3.61
366 415 2.758089 GCAGATCGGGCACAGCTTG 61.758 63.158 7.43 0.00 0.00 4.01
375 424 0.742990 TAAACAAGGCGCAGATCGGG 60.743 55.000 10.83 0.00 38.94 5.14
436 485 7.982919 ACGGTACACACAAACACACATATATAT 59.017 33.333 0.00 0.00 0.00 0.86
442 491 2.610374 GACGGTACACACAAACACACAT 59.390 45.455 0.00 0.00 0.00 3.21
443 492 2.001159 GACGGTACACACAAACACACA 58.999 47.619 0.00 0.00 0.00 3.72
444 493 1.005766 CGACGGTACACACAAACACAC 60.006 52.381 0.00 0.00 0.00 3.82
445 494 1.279152 CGACGGTACACACAAACACA 58.721 50.000 0.00 0.00 0.00 3.72
446 495 1.256117 GACGACGGTACACACAAACAC 59.744 52.381 0.00 0.00 0.00 3.32
447 496 1.558741 GACGACGGTACACACAAACA 58.441 50.000 0.00 0.00 0.00 2.83
448 497 0.499761 CGACGACGGTACACACAAAC 59.500 55.000 0.00 0.00 35.72 2.93
449 498 1.208009 GCGACGACGGTACACACAAA 61.208 55.000 9.67 0.00 40.15 2.83
461 510 1.068472 TGAGAAAAGGAGAGCGACGAC 60.068 52.381 0.00 0.00 0.00 4.34
468 517 1.273606 TGCGAGGTGAGAAAAGGAGAG 59.726 52.381 0.00 0.00 0.00 3.20
485 534 3.673484 CCAGTGGGGTTGCTTGCG 61.673 66.667 0.00 0.00 0.00 4.85
546 596 0.171231 GCGAAACCCATGGAAAGAGC 59.829 55.000 15.22 9.49 0.00 4.09
554 604 2.351350 GGTACAAACAGCGAAACCCATG 60.351 50.000 0.00 0.00 0.00 3.66
564 614 0.313987 GGGCAACTGGTACAAACAGC 59.686 55.000 0.00 0.00 38.70 4.40
572 622 2.945440 GCATGATGAAGGGCAACTGGTA 60.945 50.000 0.00 0.00 0.00 3.25
573 623 1.843368 CATGATGAAGGGCAACTGGT 58.157 50.000 0.00 0.00 0.00 4.00
575 625 1.179152 TGCATGATGAAGGGCAACTG 58.821 50.000 0.00 0.00 32.54 3.16
582 660 2.564771 ACGTACCATGCATGATGAAGG 58.435 47.619 28.31 12.54 33.31 3.46
583 661 4.990426 TGATACGTACCATGCATGATGAAG 59.010 41.667 28.31 15.66 33.31 3.02
587 665 4.281941 ACTCTGATACGTACCATGCATGAT 59.718 41.667 28.31 14.61 0.00 2.45
614 696 2.729882 GCACCAGTTCTACACGTGTTAG 59.270 50.000 28.55 20.20 0.00 2.34
615 697 2.363038 AGCACCAGTTCTACACGTGTTA 59.637 45.455 28.55 13.04 0.00 2.41
617 699 0.750850 AGCACCAGTTCTACACGTGT 59.249 50.000 26.52 26.52 0.00 4.49
629 711 1.143305 CACGTTCTCAGAAGCACCAG 58.857 55.000 0.00 0.00 0.00 4.00
632 714 0.861837 CCACACGTTCTCAGAAGCAC 59.138 55.000 0.00 0.00 0.00 4.40
635 717 1.891060 GCGCCACACGTTCTCAGAAG 61.891 60.000 0.00 0.00 46.11 2.85
638 720 3.414700 GGCGCCACACGTTCTCAG 61.415 66.667 24.80 0.00 46.11 3.35
654 737 0.804364 TAGCTCGTGCAAGCATTTGG 59.196 50.000 12.73 0.00 45.00 3.28
655 738 2.838386 ATAGCTCGTGCAAGCATTTG 57.162 45.000 12.73 0.00 45.00 2.32
670 753 8.873186 ATTCCTAGAACCTCTAGTAGAATAGC 57.127 38.462 0.64 0.00 43.76 2.97
673 756 9.495382 ACAAATTCCTAGAACCTCTAGTAGAAT 57.505 33.333 0.64 8.75 43.76 2.40
679 762 6.987404 GCCTAACAAATTCCTAGAACCTCTAG 59.013 42.308 4.05 4.05 44.62 2.43
680 763 6.442564 TGCCTAACAAATTCCTAGAACCTCTA 59.557 38.462 0.00 0.00 0.00 2.43
681 764 5.250774 TGCCTAACAAATTCCTAGAACCTCT 59.749 40.000 0.00 0.00 0.00 3.69
683 766 5.514500 TGCCTAACAAATTCCTAGAACCT 57.486 39.130 0.00 0.00 0.00 3.50
684 767 5.067805 CCATGCCTAACAAATTCCTAGAACC 59.932 44.000 0.00 0.00 0.00 3.62
685 768 5.652452 ACCATGCCTAACAAATTCCTAGAAC 59.348 40.000 0.00 0.00 0.00 3.01
686 769 5.826643 ACCATGCCTAACAAATTCCTAGAA 58.173 37.500 0.00 0.00 0.00 2.10
688 771 4.273480 CGACCATGCCTAACAAATTCCTAG 59.727 45.833 0.00 0.00 0.00 3.02
689 772 4.196193 CGACCATGCCTAACAAATTCCTA 58.804 43.478 0.00 0.00 0.00 2.94
690 773 3.016736 CGACCATGCCTAACAAATTCCT 58.983 45.455 0.00 0.00 0.00 3.36
691 774 2.479560 GCGACCATGCCTAACAAATTCC 60.480 50.000 0.00 0.00 0.00 3.01
692 775 2.163412 TGCGACCATGCCTAACAAATTC 59.837 45.455 0.00 0.00 0.00 2.17
693 776 2.094752 GTGCGACCATGCCTAACAAATT 60.095 45.455 0.00 0.00 0.00 1.82
694 777 1.472480 GTGCGACCATGCCTAACAAAT 59.528 47.619 0.00 0.00 0.00 2.32
697 780 0.250510 TTGTGCGACCATGCCTAACA 60.251 50.000 0.00 0.00 0.00 2.41
740 862 6.036735 ACAATTCACCGAAATATTCCTACACG 59.963 38.462 0.00 0.00 0.00 4.49
764 887 4.556233 GGTTGCAACTTCCTCCATTTAAC 58.444 43.478 27.64 3.39 0.00 2.01
1146 1287 3.626596 TCCTCCTCCCCTTGCCCT 61.627 66.667 0.00 0.00 0.00 5.19
1422 1566 1.301716 CCGGTGGTCAAGTGTGAGG 60.302 63.158 0.00 0.00 33.27 3.86
1549 1698 1.443872 CCTTCGGGTCGTCGACTTG 60.444 63.158 23.69 16.25 39.01 3.16
1608 1761 4.619227 CTGTGGTTCACCGGGCGT 62.619 66.667 6.32 0.00 39.43 5.68
1660 1816 2.187424 CTGGGCTGAGCTGAGAGC 59.813 66.667 3.62 2.11 42.84 4.09
1674 1830 3.589654 TTCGCCGGAGTTGAGCTGG 62.590 63.158 5.05 0.00 34.81 4.85
1730 1887 5.811588 GAGGATTTCGACTGATTTTTAGGC 58.188 41.667 0.00 0.00 0.00 3.93
1751 1908 5.391312 AAATGGAAAAAGGTTGGATCGAG 57.609 39.130 0.00 0.00 0.00 4.04
1768 1925 3.742369 ACTTTTGATGCAGCGAAAAATGG 59.258 39.130 17.58 9.04 0.00 3.16
1781 1941 5.396484 AGATGCGACATTGAACTTTTGATG 58.604 37.500 0.00 0.00 0.00 3.07
1818 1979 8.699130 ACCAACAGAAAATTGATCTCTCTTTTT 58.301 29.630 0.00 0.00 0.00 1.94
1873 2038 2.104331 ATCGGACGACACGCATCC 59.896 61.111 0.00 0.00 0.00 3.51
1886 2051 2.572095 TTAGCGACACTGGGCATCGG 62.572 60.000 0.00 0.00 36.37 4.18
1933 2113 4.873129 CGTGCTGGGTCGGATCGG 62.873 72.222 0.00 0.00 0.00 4.18
1962 2153 1.513160 GCTGAGTCACGTCGAGAGC 60.513 63.158 0.00 0.00 0.00 4.09
2067 2280 1.079197 ATCCGCATCACTGTTCGCA 60.079 52.632 0.00 0.00 0.00 5.10
2068 2281 1.349627 CATCCGCATCACTGTTCGC 59.650 57.895 0.00 0.00 0.00 4.70
2069 2282 1.349627 GCATCCGCATCACTGTTCG 59.650 57.895 0.00 0.00 38.36 3.95
2157 2370 3.186047 GCACGACATTCCGTCCCG 61.186 66.667 0.00 0.00 42.07 5.14
2158 2371 3.186047 CGCACGACATTCCGTCCC 61.186 66.667 0.00 0.00 42.07 4.46
2159 2372 3.849953 GCGCACGACATTCCGTCC 61.850 66.667 0.30 0.00 42.07 4.79
2253 2466 1.004927 GACGCCGTAGTAATCGTACGT 60.005 52.381 16.05 0.00 41.37 3.57
2259 2472 2.007641 CGCCGACGCCGTAGTAATC 61.008 63.158 0.00 0.00 0.00 1.75
2261 2474 3.381169 GACGCCGACGCCGTAGTAA 62.381 63.158 3.01 0.00 45.53 2.24
2485 2714 0.396139 ATAATGGTGCCAGCAGGGTG 60.396 55.000 1.98 0.00 39.65 4.61
2486 2715 0.336048 AATAATGGTGCCAGCAGGGT 59.664 50.000 1.98 0.00 39.65 4.34
2487 2716 0.748450 CAATAATGGTGCCAGCAGGG 59.252 55.000 1.98 0.00 40.85 4.45
2488 2717 0.103572 GCAATAATGGTGCCAGCAGG 59.896 55.000 1.98 0.00 35.91 4.85
2489 2718 1.108776 AGCAATAATGGTGCCAGCAG 58.891 50.000 1.98 0.00 43.27 4.24
2490 2719 1.477700 GAAGCAATAATGGTGCCAGCA 59.522 47.619 0.00 0.00 43.27 4.41
2491 2720 2.214387 GAAGCAATAATGGTGCCAGC 57.786 50.000 0.00 0.00 43.27 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.