>input_sequence_74610
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--------------------ATGATGAGCGGCGGCGGCAGTGGCAGCGGCAGCGGCAGCGGCGCGGGGCCGAGCAGCTCC
AGCTTCGAGCGGCACGCCAAGCGGCGGCCCCCGGCGACGCCGGCGTCGGACCAGCAGCGGAAGCTGCTGCGGCTGTCGAT
GCAGCAAGGGCAAGGGGAGGAGGACGCGCTGGCGGCGGGCGTGGTGCCGCCGGTCACCGTGGTCCTGGACGGGCGCTGCA
TCTGCCACCGCATCCACCTCAGCGGCCACACCGGGTACCGCAGCTTCGCGGGCGCCCTCCGCCGCATGTTCGTGGACGAC
GCGGCCGAGGG---CGACGACGACGGGCTCGACCTCTCCAATGCCGTCCCCGGGCACGTCGTGGCGTACGAGGACATGGA
GGACGACCTCCTCCTCGCCGGCGACCTCAACTGGAAGTAAGTAATCCTCACACTTGACCAC----CGG-TTCACTTGTGA
CATTGATTTCCTTACCGAATTCTCGTGTCGTTGGTTTTTGCCCGTTGTGTCGCAGGGACTTCTGCCGTGTGGCGAAGAGG
ATCCGGATCATCCCGGCCAAGTCGACGACCCGAAGGATCAAGCAATGCGGGGGCGCGGTGAACTAG--------------
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>chr2A_1_TraesCS2A01G506100
GCCCCGGCACGTACGTACCGGCCGGGCGCCGGAGCGAGAGATCACGAGCAATCAATCAACCAACCAACGAACGCGGCCAC
TACGATACGGCCGGGGGCACGCGACCACGTACCATAC-GGGGGTAGTGGTGTCATGGCACGGC--GGGCGCCGTGCATGG
CGGCGAGATGCATGGCAGCAGCAGGACCGAGCGACCGGCGGAGGGTCAAACGCCGAGCAGGCCGATCGGCAACCA-----
-----------------------------CGTCGCTTCTCACGGATCGTGAGAACAAACCCCCGCGTCCGCCGCCCCCAC
TATTCAACCCTCGCGTGCACGCGCGCGCGGCCGGGCTCCGCTCCCCGGGCGAG----C-------ACACGACCATCTATG
CCCAGCAACAGCACCAAGCTGTGCCCGATCTGCGCCTTGTTTATGTCTCCGTGCCTCGGGTTGCTCCGCAAGATAACGAT
GTGTATATATATGTGTGTTTGTGTGTACCGTCGTCGCTCTCCTTTTCTCACCTCGCAAGCAACCCCACTGGCACTTTGGC
GATTTCAT-AAGCTGTTAGGAGGATTTCCATGTCAGCTCTTTCCATGGGTTTCGCTGTTTGTACC---------------
-------------AGTTGCCCTTCAT----CATGCATGGTACGTATCAGAGTTAACTAACACGTGTAGAACTGGTGCTTC
-TGAGAACGTGTGGCGCCAAATGCTTGCACGAGCTATTCTACTAGAGGTTCTAGGAATTTGTTAGGCA------------
---------------------------TGGTCGCACAAAGTCGTACGTGAAAGCGTTTTTACGTGTAGGAA-TATTTCGG
TGAATTGTTAAATGGAGGAAGTTGCAACCCTAGCTAGTAGCTA---GAGCTCAGTCTCAGTCCCATCATCCATCCATCGC
CGGCTTGGCCGCCTATAAATCCTCCCGCACTTCGCCGCAAAAG-AACACAACTGACAATCAAGACCAGTCCA--------
------CTAAACCCCACACGCAACCGCCCACCACAAACCCCGGCCGCCGGCCGGCCCGCGAGTTCGACCGAGTCCAACGA
AGATCAGTTCCGTTCCGGCCATGATGAGCGGCGGCGGCAGTGGCAGCGGCAGCGGCAGCGGCGCGGGGCCGAGCAGCTCC
AGCTTCGAGCGGCACGCCAAGCGGCGGCCCCCGGCGACGCCGGCGTCGGACCAGCAGCGGAAGCTGCTGCGGCTGTCGAT
GCAGCAAGGGCAAGGGGAGGAGGACGCGCTGGCGGCGGGCGTGGTGCCGCCGGTCACCGTGGTCCTGGACGGGCGCTGCA
TCTGCCACCGCATCCACCTCAGCGGCCACACCGGGTACCGCAGCTTCGCGGGCGCCCTCCGCCGCATGTTCGTGGACGAC
GCGGCCGAGGG---CGACGACGACGGGCTCGACCTCTCCAATGCCGTCCCCGGGCACGTCGTGGCGTACGAGGACATGGA
GGACGACCTCCTCCTCGCCGGCGACCTCAACTGGAAGTAAGTAATCCTCACACTTGACCAC----CGG-TTCACTTGTGA
CATTGATTTCCTTACCGAATTCTCGTGTCGTTGGTTTTTGCCCGTTGTGTCGCAGGGACTTCTGCCGTGTGGCGAAGAGG
ATCCGGATCATCCCGGCCAAGTCGACGACCCGAAGGATCAAGCAATGCGGGGGCGCGGTGAACTAG----CTAGCCAGCC
ACGCCCGGT---GAACCACAGGTGTAATTAAGCCATACCTCTGCAGCTCCACTCCGCTCTCAGCTCAGCCCAGCTCAACT
CCGGCG-AAAAAAAGATCAAGCCCGGCCGGCCCGTCGTCAACATCTGCCTAAAAATCAGTCGAAATCCTCGATCCAACCT
TTTTC---CATTTTTCGCTGCATCAAAAGTTCAATGTCGCATC-TCACAATGAAAAGAAAAAAGAGAGATCAATTTTCTG
TTGGTGCGAGAGACAAGAAAGCTAGCTAGCATA----GGATGCGTGTCGTCCGATGC---------------CCAGTGTC
GCTAACCGGAGCACTGTGCCGGCGTCAAATCGCCGATCCGA-----------CCCAGCACGCACGGCACGTCGCTCTCGA
CGTGACTCAGCGACCGCGCCCCCTCG-----------CCGTGTGTTTTTATCGCGAAAGCTCAGCCCG-----------G
GCGGTTGGGATCTCCCTTTTGAGCGCCACGTCGTTGAAGTGCGAACAGTGATGCGGATGCGCGTAGCCGTCGCCGGGCAC
GTTACGTGCGCCGAGGCGCGATCGGACGTACGTGGAGCTGGCGGCCGGCCGGGACGGAATGTCGTGCGCCCGTGCGCGCG
GTTCACCGCCGGATCGATGGATCGGCACGTACGCCACTCCACGTGTGGGTGGGAGCACGTACGCTACGTACGATTACTAC
GGCGTCGGCGTCGCTCGTAATGAGCGCTGCTGCCTGTTCAATTACTGCGG------CGGCGACGACGGCGACGTCGATCG
TGGCCGGGCGGCCGGGAGTGTGACACAACGAGCCGCGGACGCGCACGCGCACAGTTGATTGGAGACTTGAT---GGCCAT
GGATCGCCGAGGCAGCATGACTGTCATCCACACTCCAC-------AGCATGGAAATTGGTAGACCAGATCGACCACCCTG
CTGGCACCATTATTGCTTCCCGGTAAAACGGGCGGAGATCGGTGGTGTGCGTTGCGTGCA-TGCCCTTGGATCAACGATC
ATGTGGGGAATCATGTCTCAGTTCTTG
>chr2D_4
---CCGGCACGTACGCACCGGCCGGGGGCCGGAGCGAGAGATCACGAGCAACCAACCAACCAACCAACGAACGCGGCCAC
TACTATACGGCCGGGGGCACACGACCACGTACCATACGGGGGGTAGTGGTGTCATGGCACGGTGTGGGCGCCGTGCATGG
CGGCGAGATGCATGGCAGC---AGGACCGAGCGACCGCCGGAGGGTCAAACGCCGAGCAAGCCGATCGGCAACCGCGCGC
CCTGGCTCTGCGTGTGTGGTCGTGTGCCCCGTCGCTTCGCACGGATCGTGAGAACAAACTCCCGCGTCCACCGCGCCCAC
TATTCAACCCTCGCGTGCACGCGCGCG------GGCTCCGCTCCCCGGGTGAG----CACACGAGACACGACCATCTATG
CCCGGCAACAGCAAGAAGCTGTGGCCGATCTGGGCCTTGTTTATGTCTCCGTGCCTCGGGTTGCTCTGCAAGATAACGAT
GTGTGTATAT--------TTGTGTGTACCCTCGTCGTTCTCCTTTTCTCACCTTGCAAGCAACCCCACTGGCACTTTGGC
GATTTCATCAAGCTGTTAGGAGGATTTCCGTGTCACCTCTTTCAATGAGTTCCACTGTTTGCCCTAGACTGTCTAGAAGG
CTTCTCCGATCCAAGTTGCATTTCCT----CATGCATGGTACGTATCAGAGTTAATCAGCACGTGAAGAATTGTTGTTTT
TTGAGAATGTGTGGCGTGAAATGCTTGCACGAACTGTTCTAGAGGTTTGT-------TTAGTTAGGCATGGTGCTGGTGT
TGTACACCGGTACACGGCAGCCAGCGCTGGTCGCACAGAGTCGTACGTGAAAGCGGTTTTATGTGTAGGAA-TATTTCGG
TGAATTATTAAATGAAGGAAGCTGCAACCCTAGCTAGTAGCTAGATGAGCTCGGTCTCAGTCCCATCATCCATCCATCGC
CGGCTTGGCCGCCTATAAATCCTCCCGCACTTCGCCGCAAAAG-AACACAACTGAGAATCAAGACCAGTCCA--------
------CTAAACCCCACACGCAACCGCCCACCACAAACCCCGGCCGCCGGCCGGCCCGCGAGTTCGACCGAGTCCAACTA
AGATCAGTTCCGTTCCGGCCATGATGAGCGGCGGCGGCAGCGGCAGCGG------CAGCGGCGCGGGGCCGAGCAGCTCC
AGCTTCGAGCGGCACGCGAAGCGGCGGCCCCCGGCGACGCCGGCGTCGGACCAGCAGCGGAAGCTGCTGCGGCTGTCGAC
GCAGCACGGGCAGGGGGAGGAGGACGCGCTGGCGGCGGGCGTGGTGCCGCCGGTCACGGTGGTCCTGGACGGGCGCTGCA
TCTGCCACCGCATCCAGCTCAGCCGCCACACCGGGTACCGCAGCCTCGCGGGCGCCCTCCGCCGCATGTTCGTGGACGAC
GCGGCCGAGGGCGACGACGACGACGGGCTGGACCTCTCCAATGCCGTCCCCGGGCACGTCGTGGCGTACGAGGACATGGA
GGACGACCTCCTCCTCGCCGGCGACCTCAGCTGGAAGTAAGTAAT-CTCACACTTGACCACGTACCGGTCTCACTTGTGA
CATTGATTTCTTTACCGAATTCTCGTGTCGTTGGTTTTTGCCCGTTGTTGC-CAGGGACTTCTGCCGTGTGGCGAAGAGG
ATCCGGATCATCCCGGCGAAGTCGACGACCCGGAGGATCAAGCAATGCGGGGGCGCGGTGAACTAG----CTAGTCAGCC
GCGCCCGGT---GAACCACAGGTGTAATTAAGCCATACCTCTGCAGCTCCACTCCACTCTCAGCTCAGCTCAGCTCAACT
CCGGCGAAAAAAAAGATCAAGTCCGGCCGGCCCGTCGTCAACATCTCCCTAAAAATCAATAGAAATCATCGATCCAACCT
TTTTTTTTCATTTTTCGCTGTATCAAAAGTTCAATGTCGCATTGCCACAATGAGAAGAGAAAAGAGAGATCAATTTTCTG
TTGGTGCGAGAGAGAAGAAAGCTAGCTAGCATA----CGATGCGTGTCGTGCGATGCCCACCGGCTAGCTAGCCAGTGTC
GCTAACCGGAACACTGTGCCGGCGTCAAATCGTCGATCCGCCCCGCCCCACCCCCAGCACGCACGGCACGTCCCTCTCGA
CGTGACTCAGCGACCGCGCCCCCTCGGCACCAGCCCGCCGTGTGTTTTTATCGCGAAAGCTCAGGCCCGGGTTGCTCCCG
GCAGTTGGGATCTCCCTTTTGAGCGCCACGTCGTTGAAGGAGGAACAGTGATGCGGATGCGCGTAGCCGTCGGGTG---C
GTTACGTGCGCGGAGGCGCGATCGGACGTACGTGGAGCTGGCGGCCGA----GACGGAATGTCGTGTGCCCGTGCGCGCG
GTTCACCGCCGGACCGATGGATCGGCACGTACGCCACCCCACGTGTGGG----AACGGGTACGCTGCG------TACCAC
GGCGTCGGCGTCGCTCGTAAGGAGCGCTGCTGCCTGTTCAATTACTGCGG------CG------ACGTCGACGTCGATCG
TGGCCGGGCGGCCGGGAGTGTGACACAACGATCCGCGGACGCGCACGCGCACAGTTGATTTGGGACTTGAC---AGGCAT
GGATCCCGAAGGCGGCATGACTGTCA-------TCCAC-------AGCATGGAAATTGGTAGACCAGACCAAC-------
CTGGCACCATTATTGTTTCCCGGTAAAATAGGCGGAGATCGGTGGTGTGCGTTGCGTGCAATGCCCATGGATCAACGATC
AAGTGGGGAATCATGTCTCGTTCTTG-
>chr2B_233
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-----------------------------CGTCGCTTCGCACGGATCGTGAGAACAAACTCCCGCGTCCGCCGCTCCCAC
TATTCAACCCTCGCGTGCACGCGCGCG----CGGGCTCCGCTCCCCGGGCGGGCCAAC-------ACACGACCATCTATG
CCCAGCAACAGCAAGAAGCTGTGGCCGATCTGCGCCTTGTTTATGTCTCCGTGCCTCGGGTTGCTCTGCAAGATAACGAT
GTGTGTATAT--------TTGTGTGTACCCTCGCCGTTCTCCTTTTCTCACCTTGCAAGCAACCCCACTGGCACTTCGGC
GATTTCATCAAGCTGTTAGGAGGATTTCCATGTCACCTCTTTCAGTGGGTTTCACTGTTTGCCCTAGACTGTCTAGAAGG
CTTC-----TCCAAGTTGCATTTCCTCATGCATGCATGGTACGTATCAGAGTTAATCACCACGTGTAGAATTATTGTT-T
TTCAGAATGTGTGGCGTGAAATGCTTGCACGAACTGTTCTAGAGGTTTGT-------TTAGTTAGGCATGGTGCTGGTGT
TGTACAACGGTACAAGGCAGCCAGCGCTGGTCGCACAAAGTCGTACGTGAAAGCGTTTTCATGTGTAGGAAATATTTCGG
TGGATTATTAAATGGAGGAAGTTGCAACCCTAGCCAGTAGCTA---GAGCTCAGTCTCAGTCCCATCATCCATCCGTCGC
CGGCTTGGCCGCCTATAAATCCTCCCGCACTTCGCCGCAAAAAAAACACAACTGACCATCCAGACCAGTCCGGGCTGGCC
TCCTTCCTAAACCCCACACGCAACCGCCCACCACAAACCCCGGCCGCCGGCCGGCCCGCGAGTTCGACCGAGTCCAACTA
AGATCAGTCCCGTTCCGGCCATGATGAGCGGCGGTGGCAGTGGCAGCGG------CAGCGGCGCGGGGCCGAGCAGCTCC
AGCTTCGAGCGGCACGCGAAGCGGCGGCCCCCGGCGACGCCGGCGTCGGACCAGCAGCGGAAGCTGCTGCGGCTGTCGGT
GCAGCACGGGCAGGGGGACGAGGACGCGCTGGCGGCGGGCGTGGTGCCGCCGGTGACGGTGGTCCTGGACGGGCGCTGCA
TCTGCCACCGCATCCAGCTCAGCTGCCACACCGGGTACCGCAGCCTCGCGGGCGCCCTCCGCCGCATGTTCGTGGACGAC
GCGGCCGAGGGCGAC---GACGACGGGCTCGACCTCTCCAATGCCGTCCCCGGGCACGTCGTGGCGTACGAGGACATGGA
GGACGACCTCCTCCTCGCCGGCGACCTCAACTGGAAGTAATCATC---CACACTTGCCCAA----CGGTTTCACTTGTGC
CATTGATTTCCTTACCGAATTCTCGTGCCGTTGGTTTTTGCCCGTTGTTGC-CAGGGACTTCTGCCGTGTGGCCAAGAGG
ATCCGGATCATCCCGGCAAAGTCGACGACCCGAAGGATCAAGCAATGCGGAGGCGCGGTTAACTAGCTAGCTAGTCAGCC
CCGCCCGGTGAAGAACCACAGGTGTAATTAAGCCATACCTCTGCAGCTCCACCCCACTCTCAGCTCAGCTCAGCTCAACT
CCGGCGAAAAAAAAGATCAAGTCCGGCCGGCCCGCTGTCGAGAACTCGACGTCTCCCTAAAATCAA-ATCGATCCAACCT
TT---TTTCATTTTTCGCTGTATCAAAAGTTCAATGTCGCATTGTCACAATGAAAAGAGAAAAGAGA--TCAATTTTCTG
TTGGTGCGAGAGAGAAGAAAGCTAGCTAGCATACGATCGATGCGTGTCGTGCGATGACCACCGGCTA-----CCAGTGTC
GCTAACCGGAGCACTGTGCCGGCGTCAAATCGTCGATCCGCCCCGGCCCACCCCCAGCACGCACGGCACGTCCCTCTCGA
CGTGACTCAGCGACCGCGCCCCCT-----------CGCCGTGTGTTTTTATCGCGAAAGCTCAGGCCCGGGTTGCTCCCG
GCGGTTGGGATCTCCCTTTTGAGCGCCACGTCGTTGAAGGAGGAACAGTGATGCGGATGCGCGTAGCCGTCGGGT---AC
GTTACGTGCGCCGAGGCGCGATCGGACGT----GGAGCTGGCGGTCGA----GACGGAATGTCGTGTGCCCGTGCGCGCG
GTTCACCGCCGGATCGATGGATCGGCACGTACGCCACTCGACGTGTGGGTGGGAAAGGGTACGCTGCGTACCA-------
--CGTCGGCGTCGCTCGTAATGAGCGCTGCTGCCTGTTCAATTACTACGGCGGCGACG------ACGTCGACGTCGATCG
TGGCCGGGCTGCCGGGAGTGTGATACAACGAAACGCGGACGCGCACGCGCACAGTTGATTGGAGACTTGACGACGGCCAT
GGATCGCAAAGGCAGCATGACTGTCA-------TCCACACTCCACAGCATGGAAATTGGCAGACCAGACCACC-------
CTGGCAACATTATTGTTTCCCGGTAAAATGGGCGGAGATCGGTGGCGTGCGT----------GCCCTTGGATCGACGGTC
ATGTGGGGAATCATGTCTCAGTTCTTG
>SNPs
SSS------------S----------S------------------------S---S------------------------
---S----------------S-----------------------------------------S-----------------
-------------------SSS---------------S---------------------S--------------S-----
--------------------------------------S--------------------S--------------S-----
---------------------------SSSS-------------------------------------------------
-------------SS--------S------------------------------------------S-------------
----S-----SSSSSSSS-----------S------S----------------S--------------------------
-----------------------------------S-------S---------S-------SS-S---------------
-------------------SS---S------------------------------SS-S-----------S--S--S--S
-------S--------SS--------------S--S-----SSS-SSSS-SSSSSSS--S--------------------
-------------------------------------------------------------S------------------
------S-------------------------------------------------------------------------
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------------------------------------------------------------------------------S-
-------------------------------------------------SSSSSS-------------------------
-----------------S--------------------------------------------------------------
------S-----S--------------------------------------------S----------------------
----------------S------S--------------------S-----------------------------------
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---------------------------------------------S----------------------------------
------------------------------------------------SS-S----------------------------
-----------------S--------------------------------------------------------S-----
S------------------------------------------------------S-------------S----------
---------------------S------------------------S-----------S-S------S------------
----S---------------S---------------------S---------------S---------------------
-------------S-----------------------S------------S-----------------------------
--------------------------------S-------S-------------------------------S-------
----------------------------------------------------------------S--S------------
---------------------------------------SSS------------------------------SSS-SS--
-----------------------------------------------SSSSS--------------S-------------
------------------------------------------------------S-SS-------S-----S-S---S--
----------------------------------------------------------SSSSSS---S------------
-------------------------------S--------------------------------------S---------
-------SS-----------------SSSSSSS-----------------------------------S-S--SSSSSSS
---------------S------------S---------------------------------------------------
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>forward_660
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CGCTGTTTGTACCAGTTGCC------------------------------------------------------------
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>reverse_2717
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----------------------------------------------------------------------------CCTG
CTGGCACCATTATTGC----------------------------------------------------------------
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