Multiple sequence alignment - TraesCS2A01G500000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G500000 chr2A 100.000 3110 0 0 1 3110 729209083 729205974 0.000000e+00 5744.0
1 TraesCS2A01G500000 chr2A 90.485 557 48 4 1468 2020 721645157 721645712 0.000000e+00 730.0
2 TraesCS2A01G500000 chr2A 89.512 410 43 0 1030 1439 721644751 721645160 1.280000e-143 520.0
3 TraesCS2A01G500000 chr2A 95.681 301 12 1 1 301 691663128 691662829 1.680000e-132 483.0
4 TraesCS2A01G500000 chr2A 93.478 46 0 1 2044 2086 721645760 721645805 7.200000e-07 65.8
5 TraesCS2A01G500000 chr2B 93.114 1917 55 34 567 2451 722347478 722345607 0.000000e+00 2737.0
6 TraesCS2A01G500000 chr2B 87.700 1065 105 9 981 2020 708354689 708355752 0.000000e+00 1218.0
7 TraesCS2A01G500000 chr2B 82.692 208 24 2 1021 1228 708324854 708325049 1.150000e-39 174.0
8 TraesCS2A01G500000 chr2B 86.486 111 8 6 3000 3110 722345614 722345511 7.050000e-22 115.0
9 TraesCS2A01G500000 chr2B 81.416 113 13 4 2027 2137 708355783 708355889 5.530000e-13 86.1
10 TraesCS2A01G500000 chr2D 95.528 1677 36 16 792 2451 594650436 594648782 0.000000e+00 2645.0
11 TraesCS2A01G500000 chr2D 90.139 1004 94 4 1021 2020 586855444 586856446 0.000000e+00 1301.0
12 TraesCS2A01G500000 chr2D 91.071 112 6 2 3002 3110 594648787 594648677 6.950000e-32 148.0
13 TraesCS2A01G500000 chr2D 80.814 172 28 4 328 494 12381648 12381819 2.520000e-26 130.0
14 TraesCS2A01G500000 chr2D 93.023 43 0 1 2044 2083 586856494 586856536 3.350000e-05 60.2
15 TraesCS2A01G500000 chr5A 96.721 549 16 2 2451 2999 305831187 305830641 0.000000e+00 913.0
16 TraesCS2A01G500000 chr5A 80.460 174 28 2 328 496 496604230 496604402 9.050000e-26 128.0
17 TraesCS2A01G500000 chr3A 96.721 549 17 1 2451 2999 393399694 393399147 0.000000e+00 913.0
18 TraesCS2A01G500000 chr3A 95.298 553 25 1 2451 3003 599439422 599439973 0.000000e+00 876.0
19 TraesCS2A01G500000 chr3A 94.727 550 28 1 2451 3000 486158357 486158905 0.000000e+00 854.0
20 TraesCS2A01G500000 chr3A 96.667 300 8 1 1 300 30524878 30524581 5.990000e-137 497.0
21 TraesCS2A01G500000 chr3A 92.857 42 3 0 1753 1794 194701138 194701179 9.310000e-06 62.1
22 TraesCS2A01G500000 chr3A 92.500 40 2 1 1760 1798 8699986 8699947 4.330000e-04 56.5
23 TraesCS2A01G500000 chr6A 95.811 549 22 1 2451 2999 344272765 344273312 0.000000e+00 885.0
24 TraesCS2A01G500000 chr6A 94.909 550 25 2 2449 2998 194798861 194799407 0.000000e+00 857.0
25 TraesCS2A01G500000 chr6A 97.000 300 9 0 1 300 262049738 262049439 3.580000e-139 505.0
26 TraesCS2A01G500000 chr6A 96.013 301 10 2 1 300 560566926 560566627 3.600000e-134 488.0
27 TraesCS2A01G500000 chr6A 96.013 301 9 2 1 300 104524783 104525081 1.300000e-133 486.0
28 TraesCS2A01G500000 chr6A 82.759 174 25 4 328 496 520364150 520363977 1.930000e-32 150.0
29 TraesCS2A01G500000 chr6A 79.651 172 30 4 327 493 532433555 532433726 5.450000e-23 119.0
30 TraesCS2A01G500000 chr6B 94.727 550 27 2 2451 3000 192347559 192347012 0.000000e+00 854.0
31 TraesCS2A01G500000 chr7B 94.192 551 29 3 2451 3000 642287901 642288449 0.000000e+00 837.0
32 TraesCS2A01G500000 chr1B 93.863 554 33 1 2446 2999 309197205 309196653 0.000000e+00 833.0
33 TraesCS2A01G500000 chr7A 96.382 304 9 2 1 303 77165149 77164847 1.670000e-137 499.0
34 TraesCS2A01G500000 chr7A 96.644 298 7 2 1 298 643242393 643242687 2.790000e-135 492.0
35 TraesCS2A01G500000 chr7A 96.013 301 11 1 1 301 692508587 692508886 3.600000e-134 488.0
36 TraesCS2A01G500000 chr7A 96.000 300 10 2 1 300 24447979 24448276 1.300000e-133 486.0
37 TraesCS2A01G500000 chr7A 80.460 174 29 5 328 496 679060198 679060025 9.050000e-26 128.0
38 TraesCS2A01G500000 chr3B 81.868 182 28 4 331 507 572797696 572797515 6.950000e-32 148.0
39 TraesCS2A01G500000 chr3B 79.882 169 29 4 331 494 238495695 238495863 5.450000e-23 119.0
40 TraesCS2A01G500000 chr3B 100.000 31 0 0 1764 1794 239303681 239303711 1.200000e-04 58.4
41 TraesCS2A01G500000 chr1A 82.456 171 25 4 331 496 22928072 22928242 8.990000e-31 145.0
42 TraesCS2A01G500000 chr5D 80.208 192 32 5 321 507 475931981 475931791 4.180000e-29 139.0
43 TraesCS2A01G500000 chr7D 90.909 44 4 0 1752 1795 41440018 41439975 3.350000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G500000 chr2A 729205974 729209083 3109 True 5744.00 5744 100.000000 1 3110 1 chr2A.!!$R2 3109
1 TraesCS2A01G500000 chr2A 721644751 721645805 1054 False 438.60 730 91.158333 1030 2086 3 chr2A.!!$F1 1056
2 TraesCS2A01G500000 chr2B 722345511 722347478 1967 True 1426.00 2737 89.800000 567 3110 2 chr2B.!!$R1 2543
3 TraesCS2A01G500000 chr2B 708354689 708355889 1200 False 652.05 1218 84.558000 981 2137 2 chr2B.!!$F2 1156
4 TraesCS2A01G500000 chr2D 594648677 594650436 1759 True 1396.50 2645 93.299500 792 3110 2 chr2D.!!$R1 2318
5 TraesCS2A01G500000 chr2D 586855444 586856536 1092 False 680.60 1301 91.581000 1021 2083 2 chr2D.!!$F2 1062
6 TraesCS2A01G500000 chr5A 305830641 305831187 546 True 913.00 913 96.721000 2451 2999 1 chr5A.!!$R1 548
7 TraesCS2A01G500000 chr3A 393399147 393399694 547 True 913.00 913 96.721000 2451 2999 1 chr3A.!!$R3 548
8 TraesCS2A01G500000 chr3A 599439422 599439973 551 False 876.00 876 95.298000 2451 3003 1 chr3A.!!$F3 552
9 TraesCS2A01G500000 chr3A 486158357 486158905 548 False 854.00 854 94.727000 2451 3000 1 chr3A.!!$F2 549
10 TraesCS2A01G500000 chr6A 344272765 344273312 547 False 885.00 885 95.811000 2451 2999 1 chr6A.!!$F3 548
11 TraesCS2A01G500000 chr6A 194798861 194799407 546 False 857.00 857 94.909000 2449 2998 1 chr6A.!!$F2 549
12 TraesCS2A01G500000 chr6B 192347012 192347559 547 True 854.00 854 94.727000 2451 3000 1 chr6B.!!$R1 549
13 TraesCS2A01G500000 chr7B 642287901 642288449 548 False 837.00 837 94.192000 2451 3000 1 chr7B.!!$F1 549
14 TraesCS2A01G500000 chr1B 309196653 309197205 552 True 833.00 833 93.863000 2446 2999 1 chr1B.!!$R1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 0.035439 GGACAATGAAGGGGCGAGAA 60.035 55.0 0.00 0.0 0.00 2.87 F
116 117 0.171455 TGTTTCGCGCCAAAACAGTT 59.829 45.0 24.07 0.0 40.64 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1665 1685 0.032615 AGAGGAGGCTCTCGAACCAT 60.033 55.000 15.23 0.0 38.71 3.55 R
2159 2235 3.947612 TGTAGTCCGAGAGATTACCCT 57.052 47.619 0.00 0.0 36.98 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.391144 GCAACTTTGGCATTGATTCGC 59.609 47.619 3.58 0.00 0.00 4.70
27 28 4.612536 GGCATTGATTCGCCGCGG 62.613 66.667 24.05 24.05 38.82 6.46
28 29 4.612536 GCATTGATTCGCCGCGGG 62.613 66.667 29.38 17.41 0.00 6.13
29 30 2.894879 CATTGATTCGCCGCGGGA 60.895 61.111 29.38 19.62 0.00 5.14
30 31 2.124901 ATTGATTCGCCGCGGGAA 60.125 55.556 29.38 26.61 38.75 3.97
31 32 1.747367 ATTGATTCGCCGCGGGAAA 60.747 52.632 29.38 13.60 37.97 3.13
32 33 1.988834 ATTGATTCGCCGCGGGAAAC 61.989 55.000 29.38 24.36 37.97 2.78
43 44 4.110493 GGGAAACGAGGCGATGAG 57.890 61.111 0.00 0.00 0.00 2.90
44 45 1.521681 GGGAAACGAGGCGATGAGG 60.522 63.158 0.00 0.00 0.00 3.86
45 46 1.515954 GGAAACGAGGCGATGAGGA 59.484 57.895 0.00 0.00 0.00 3.71
46 47 0.806492 GGAAACGAGGCGATGAGGAC 60.806 60.000 0.00 0.00 0.00 3.85
47 48 0.108804 GAAACGAGGCGATGAGGACA 60.109 55.000 0.00 0.00 0.00 4.02
48 49 0.320374 AAACGAGGCGATGAGGACAA 59.680 50.000 0.00 0.00 0.00 3.18
49 50 0.537188 AACGAGGCGATGAGGACAAT 59.463 50.000 0.00 0.00 0.00 2.71
50 51 0.179100 ACGAGGCGATGAGGACAATG 60.179 55.000 0.00 0.00 0.00 2.82
51 52 0.103026 CGAGGCGATGAGGACAATGA 59.897 55.000 0.00 0.00 0.00 2.57
52 53 1.471501 CGAGGCGATGAGGACAATGAA 60.472 52.381 0.00 0.00 0.00 2.57
53 54 2.208431 GAGGCGATGAGGACAATGAAG 58.792 52.381 0.00 0.00 0.00 3.02
54 55 1.134280 AGGCGATGAGGACAATGAAGG 60.134 52.381 0.00 0.00 0.00 3.46
55 56 1.303309 GCGATGAGGACAATGAAGGG 58.697 55.000 0.00 0.00 0.00 3.95
56 57 1.959042 CGATGAGGACAATGAAGGGG 58.041 55.000 0.00 0.00 0.00 4.79
57 58 1.685148 GATGAGGACAATGAAGGGGC 58.315 55.000 0.00 0.00 0.00 5.80
58 59 0.107017 ATGAGGACAATGAAGGGGCG 60.107 55.000 0.00 0.00 0.00 6.13
59 60 1.198094 TGAGGACAATGAAGGGGCGA 61.198 55.000 0.00 0.00 0.00 5.54
60 61 0.462759 GAGGACAATGAAGGGGCGAG 60.463 60.000 0.00 0.00 0.00 5.03
61 62 0.909610 AGGACAATGAAGGGGCGAGA 60.910 55.000 0.00 0.00 0.00 4.04
62 63 0.035439 GGACAATGAAGGGGCGAGAA 60.035 55.000 0.00 0.00 0.00 2.87
63 64 1.373570 GACAATGAAGGGGCGAGAAG 58.626 55.000 0.00 0.00 0.00 2.85
64 65 0.984230 ACAATGAAGGGGCGAGAAGA 59.016 50.000 0.00 0.00 0.00 2.87
65 66 1.065854 ACAATGAAGGGGCGAGAAGAG 60.066 52.381 0.00 0.00 0.00 2.85
66 67 0.543749 AATGAAGGGGCGAGAAGAGG 59.456 55.000 0.00 0.00 0.00 3.69
67 68 1.341156 ATGAAGGGGCGAGAAGAGGG 61.341 60.000 0.00 0.00 0.00 4.30
68 69 1.990614 GAAGGGGCGAGAAGAGGGT 60.991 63.158 0.00 0.00 0.00 4.34
69 70 0.686769 GAAGGGGCGAGAAGAGGGTA 60.687 60.000 0.00 0.00 0.00 3.69
70 71 0.688087 AAGGGGCGAGAAGAGGGTAG 60.688 60.000 0.00 0.00 0.00 3.18
71 72 1.076192 GGGGCGAGAAGAGGGTAGA 60.076 63.158 0.00 0.00 0.00 2.59
72 73 1.110518 GGGGCGAGAAGAGGGTAGAG 61.111 65.000 0.00 0.00 0.00 2.43
73 74 0.396001 GGGCGAGAAGAGGGTAGAGT 60.396 60.000 0.00 0.00 0.00 3.24
74 75 1.026584 GGCGAGAAGAGGGTAGAGTC 58.973 60.000 0.00 0.00 0.00 3.36
75 76 0.658897 GCGAGAAGAGGGTAGAGTCG 59.341 60.000 0.00 0.00 0.00 4.18
76 77 0.658897 CGAGAAGAGGGTAGAGTCGC 59.341 60.000 0.00 0.00 0.00 5.19
77 78 1.744456 CGAGAAGAGGGTAGAGTCGCT 60.744 57.143 0.00 0.00 0.00 4.93
78 79 1.673920 GAGAAGAGGGTAGAGTCGCTG 59.326 57.143 0.00 0.00 0.00 5.18
79 80 1.282447 AGAAGAGGGTAGAGTCGCTGA 59.718 52.381 0.00 0.00 0.00 4.26
80 81 1.402613 GAAGAGGGTAGAGTCGCTGAC 59.597 57.143 1.15 1.15 0.00 3.51
81 82 0.745128 AGAGGGTAGAGTCGCTGACG 60.745 60.000 3.62 0.00 37.67 4.35
82 83 2.102553 GGGTAGAGTCGCTGACGC 59.897 66.667 4.75 4.75 37.67 5.19
110 111 4.320928 CGGCTGTTTCGCGCCAAA 62.321 61.111 0.00 0.00 46.62 3.28
111 112 2.026879 GGCTGTTTCGCGCCAAAA 59.973 55.556 0.56 0.00 45.59 2.44
112 113 2.300066 GGCTGTTTCGCGCCAAAAC 61.300 57.895 20.42 20.42 45.59 2.43
113 114 1.587613 GCTGTTTCGCGCCAAAACA 60.588 52.632 25.37 25.37 42.63 2.83
114 115 4.700037 TGTTTCGCGCCAAAACAG 57.300 50.000 24.07 1.14 40.64 3.16
115 116 1.803943 TGTTTCGCGCCAAAACAGT 59.196 47.368 24.07 0.00 40.64 3.55
116 117 0.171455 TGTTTCGCGCCAAAACAGTT 59.829 45.000 24.07 0.00 40.64 3.16
117 118 0.843872 GTTTCGCGCCAAAACAGTTC 59.156 50.000 21.65 0.00 36.76 3.01
118 119 0.590230 TTTCGCGCCAAAACAGTTCG 60.590 50.000 0.00 0.00 0.00 3.95
119 120 2.975167 TTCGCGCCAAAACAGTTCGC 62.975 55.000 0.00 6.96 42.05 4.70
120 121 2.729491 GCGCCAAAACAGTTCGCC 60.729 61.111 0.00 0.00 39.91 5.54
121 122 2.050442 CGCCAAAACAGTTCGCCC 60.050 61.111 0.00 0.00 0.00 6.13
122 123 2.338620 GCCAAAACAGTTCGCCCC 59.661 61.111 0.00 0.00 0.00 5.80
123 124 2.642700 CCAAAACAGTTCGCCCCG 59.357 61.111 0.00 0.00 0.00 5.73
124 125 2.642700 CAAAACAGTTCGCCCCGG 59.357 61.111 0.00 0.00 0.00 5.73
125 126 3.292159 AAAACAGTTCGCCCCGGC 61.292 61.111 0.00 0.00 37.85 6.13
191 192 2.049156 GCTGTTTTCGGCCCAAGC 60.049 61.111 0.00 0.00 45.68 4.01
201 202 3.758931 GCCCAAGCCGGCGAAAAT 61.759 61.111 23.20 0.00 39.64 1.82
202 203 2.489751 CCCAAGCCGGCGAAAATC 59.510 61.111 23.20 0.00 0.00 2.17
203 204 2.100216 CCAAGCCGGCGAAAATCG 59.900 61.111 23.20 5.28 43.89 3.34
205 206 3.131478 AAGCCGGCGAAAATCGGG 61.131 61.111 23.20 0.00 45.75 5.14
208 209 3.573491 CCGGCGAAAATCGGGCTC 61.573 66.667 9.30 0.00 42.32 4.70
209 210 3.573491 CGGCGAAAATCGGGCTCC 61.573 66.667 0.00 0.00 40.84 4.70
210 211 2.124695 GGCGAAAATCGGGCTCCT 60.125 61.111 1.64 0.00 40.84 3.69
211 212 2.472909 GGCGAAAATCGGGCTCCTG 61.473 63.158 1.64 0.00 40.84 3.86
212 213 2.472909 GCGAAAATCGGGCTCCTGG 61.473 63.158 1.64 0.00 40.84 4.45
213 214 1.819632 CGAAAATCGGGCTCCTGGG 60.820 63.158 0.00 0.00 36.00 4.45
214 215 1.453928 GAAAATCGGGCTCCTGGGG 60.454 63.158 0.00 0.00 0.00 4.96
215 216 2.911221 GAAAATCGGGCTCCTGGGGG 62.911 65.000 0.00 0.00 0.00 5.40
233 234 3.124921 CGCGACTGGGCCGATTTT 61.125 61.111 0.00 0.00 0.00 1.82
234 235 2.686816 CGCGACTGGGCCGATTTTT 61.687 57.895 0.00 0.00 0.00 1.94
235 236 1.136774 GCGACTGGGCCGATTTTTC 59.863 57.895 0.00 0.00 0.00 2.29
236 237 1.423845 CGACTGGGCCGATTTTTCG 59.576 57.895 0.00 0.00 0.00 3.46
243 244 4.530325 CCGATTTTTCGGCGCCGG 62.530 66.667 44.95 27.98 46.76 6.13
244 245 3.795342 CGATTTTTCGGCGCCGGT 61.795 61.111 44.95 26.63 40.25 5.28
245 246 2.202427 GATTTTTCGGCGCCGGTG 60.202 61.111 44.95 21.46 40.25 4.94
246 247 4.413800 ATTTTTCGGCGCCGGTGC 62.414 61.111 44.95 31.86 40.25 5.01
253 254 4.577246 GGCGCCGGTGCAAAAACA 62.577 61.111 38.40 0.00 37.32 2.83
254 255 2.583593 GCGCCGGTGCAAAAACAA 60.584 55.556 34.26 0.00 37.32 2.83
255 256 2.167861 GCGCCGGTGCAAAAACAAA 61.168 52.632 34.26 0.00 37.32 2.83
256 257 1.633697 CGCCGGTGCAAAAACAAAC 59.366 52.632 0.00 0.00 37.32 2.93
257 258 1.633697 GCCGGTGCAAAAACAAACG 59.366 52.632 1.90 0.00 37.47 3.60
258 259 1.633697 CCGGTGCAAAAACAAACGC 59.366 52.632 0.00 0.00 0.00 4.84
259 260 1.633697 CGGTGCAAAAACAAACGCC 59.366 52.632 0.00 0.00 0.00 5.68
260 261 0.804156 CGGTGCAAAAACAAACGCCT 60.804 50.000 0.00 0.00 0.00 5.52
261 262 0.649993 GGTGCAAAAACAAACGCCTG 59.350 50.000 0.00 0.00 0.00 4.85
262 263 0.649993 GTGCAAAAACAAACGCCTGG 59.350 50.000 0.00 0.00 0.00 4.45
263 264 0.460987 TGCAAAAACAAACGCCTGGG 60.461 50.000 0.00 0.00 0.00 4.45
264 265 1.157257 GCAAAAACAAACGCCTGGGG 61.157 55.000 9.49 9.49 0.00 4.96
265 266 0.461961 CAAAAACAAACGCCTGGGGA 59.538 50.000 18.53 0.00 0.00 4.81
266 267 0.750249 AAAAACAAACGCCTGGGGAG 59.250 50.000 18.53 9.12 0.00 4.30
267 268 1.112916 AAAACAAACGCCTGGGGAGG 61.113 55.000 18.53 8.43 0.00 4.30
275 276 2.372688 CCTGGGGAGGCCTTCCTA 59.627 66.667 30.10 23.73 44.46 2.94
276 277 1.768077 CCTGGGGAGGCCTTCCTAG 60.768 68.421 32.44 32.44 44.46 3.02
277 278 1.768077 CTGGGGAGGCCTTCCTAGG 60.768 68.421 31.90 17.37 44.46 3.02
278 279 2.448736 GGGGAGGCCTTCCTAGGG 60.449 72.222 30.10 0.00 44.46 3.53
279 280 2.448736 GGGAGGCCTTCCTAGGGG 60.449 72.222 24.53 4.10 44.46 4.79
280 281 3.172106 GGAGGCCTTCCTAGGGGC 61.172 72.222 18.27 18.27 44.46 5.80
300 301 4.887615 GGCTGGAGATGCCCTTAC 57.112 61.111 0.00 0.00 44.32 2.34
301 302 1.149401 GGCTGGAGATGCCCTTACC 59.851 63.158 0.00 0.00 44.32 2.85
302 303 1.149401 GCTGGAGATGCCCTTACCC 59.851 63.158 0.00 0.00 34.97 3.69
303 304 1.447643 CTGGAGATGCCCTTACCCG 59.552 63.158 0.00 0.00 34.97 5.28
304 305 2.044806 CTGGAGATGCCCTTACCCGG 62.045 65.000 0.00 0.00 34.97 5.73
310 311 4.832608 GCCCTTACCCGGCGAGTG 62.833 72.222 9.30 0.00 36.47 3.51
311 312 4.832608 CCCTTACCCGGCGAGTGC 62.833 72.222 9.30 0.00 41.71 4.40
313 314 4.124351 CTTACCCGGCGAGTGCGA 62.124 66.667 9.30 0.00 44.10 5.10
314 315 4.124351 TTACCCGGCGAGTGCGAG 62.124 66.667 9.30 0.00 44.10 5.03
317 318 4.933064 CCCGGCGAGTGCGAGATC 62.933 72.222 9.30 0.00 44.10 2.75
329 330 4.208686 GAGATCGGCGGCGACCTT 62.209 66.667 37.06 23.69 0.00 3.50
330 331 2.831742 AGATCGGCGGCGACCTTA 60.832 61.111 37.06 14.94 0.00 2.69
331 332 2.354773 GATCGGCGGCGACCTTAG 60.355 66.667 37.06 3.42 0.00 2.18
332 333 3.843117 GATCGGCGGCGACCTTAGG 62.843 68.421 37.06 2.54 0.00 2.69
338 339 3.400054 GGCGACCTTAGGCCTGGT 61.400 66.667 17.99 16.06 45.93 4.00
339 340 2.062177 GGCGACCTTAGGCCTGGTA 61.062 63.158 17.99 0.00 45.93 3.25
340 341 1.143401 GCGACCTTAGGCCTGGTAC 59.857 63.158 17.99 7.26 36.59 3.34
341 342 1.610554 GCGACCTTAGGCCTGGTACA 61.611 60.000 17.99 0.00 36.59 2.90
342 343 0.899720 CGACCTTAGGCCTGGTACAA 59.100 55.000 17.99 0.00 38.70 2.41
343 344 1.485066 CGACCTTAGGCCTGGTACAAT 59.515 52.381 17.99 0.00 38.70 2.71
344 345 2.741878 CGACCTTAGGCCTGGTACAATG 60.742 54.545 17.99 0.21 38.70 2.82
345 346 1.564348 ACCTTAGGCCTGGTACAATGG 59.436 52.381 17.99 8.46 38.70 3.16
346 347 1.133792 CCTTAGGCCTGGTACAATGGG 60.134 57.143 17.99 0.00 38.70 4.00
347 348 1.843851 CTTAGGCCTGGTACAATGGGA 59.156 52.381 17.99 0.00 38.70 4.37
348 349 1.507140 TAGGCCTGGTACAATGGGAG 58.493 55.000 17.99 0.00 38.70 4.30
349 350 0.253160 AGGCCTGGTACAATGGGAGA 60.253 55.000 3.11 0.00 38.70 3.71
350 351 0.846693 GGCCTGGTACAATGGGAGAT 59.153 55.000 0.00 0.00 38.70 2.75
351 352 2.054799 GGCCTGGTACAATGGGAGATA 58.945 52.381 0.00 0.00 38.70 1.98
352 353 2.644798 GGCCTGGTACAATGGGAGATAT 59.355 50.000 0.00 0.00 38.70 1.63
353 354 3.074538 GGCCTGGTACAATGGGAGATATT 59.925 47.826 0.00 0.00 38.70 1.28
354 355 4.447762 GGCCTGGTACAATGGGAGATATTT 60.448 45.833 0.00 0.00 38.70 1.40
355 356 5.222048 GGCCTGGTACAATGGGAGATATTTA 60.222 44.000 0.00 0.00 38.70 1.40
356 357 5.940470 GCCTGGTACAATGGGAGATATTTAG 59.060 44.000 0.00 0.00 38.70 1.85
357 358 6.476378 CCTGGTACAATGGGAGATATTTAGG 58.524 44.000 0.00 0.00 38.70 2.69
358 359 6.448369 TGGTACAATGGGAGATATTTAGGG 57.552 41.667 0.00 0.00 31.92 3.53
359 360 5.312178 TGGTACAATGGGAGATATTTAGGGG 59.688 44.000 0.00 0.00 31.92 4.79
360 361 5.550403 GGTACAATGGGAGATATTTAGGGGA 59.450 44.000 0.00 0.00 0.00 4.81
361 362 5.850046 ACAATGGGAGATATTTAGGGGAG 57.150 43.478 0.00 0.00 0.00 4.30
362 363 5.486332 ACAATGGGAGATATTTAGGGGAGA 58.514 41.667 0.00 0.00 0.00 3.71
363 364 6.101223 ACAATGGGAGATATTTAGGGGAGAT 58.899 40.000 0.00 0.00 0.00 2.75
364 365 7.263901 ACAATGGGAGATATTTAGGGGAGATA 58.736 38.462 0.00 0.00 0.00 1.98
365 366 7.182930 ACAATGGGAGATATTTAGGGGAGATAC 59.817 40.741 0.00 0.00 0.00 2.24
366 367 6.500490 TGGGAGATATTTAGGGGAGATACT 57.500 41.667 0.00 0.00 0.00 2.12
367 368 6.886637 TGGGAGATATTTAGGGGAGATACTT 58.113 40.000 0.00 0.00 0.00 2.24
368 369 8.019537 TGGGAGATATTTAGGGGAGATACTTA 57.980 38.462 0.00 0.00 0.00 2.24
369 370 8.123130 TGGGAGATATTTAGGGGAGATACTTAG 58.877 40.741 0.00 0.00 0.00 2.18
370 371 8.345306 GGGAGATATTTAGGGGAGATACTTAGA 58.655 40.741 0.00 0.00 0.00 2.10
371 372 9.771140 GGAGATATTTAGGGGAGATACTTAGAA 57.229 37.037 0.00 0.00 0.00 2.10
407 408 3.809918 TTTTTAAGCGTCGGCGTTTAT 57.190 38.095 19.15 0.00 46.35 1.40
408 409 3.809918 TTTTAAGCGTCGGCGTTTATT 57.190 38.095 19.15 7.91 46.35 1.40
409 410 3.809918 TTTAAGCGTCGGCGTTTATTT 57.190 38.095 19.15 5.20 46.35 1.40
410 411 2.791417 TAAGCGTCGGCGTTTATTTG 57.209 45.000 14.81 0.00 46.35 2.32
411 412 0.869730 AAGCGTCGGCGTTTATTTGT 59.130 45.000 10.51 0.00 46.35 2.83
412 413 1.712401 AGCGTCGGCGTTTATTTGTA 58.288 45.000 12.58 0.00 46.35 2.41
413 414 1.391144 AGCGTCGGCGTTTATTTGTAC 59.609 47.619 12.58 0.00 46.35 2.90
414 415 1.126479 GCGTCGGCGTTTATTTGTACA 59.874 47.619 12.58 0.00 40.81 2.90
415 416 2.411289 GCGTCGGCGTTTATTTGTACAA 60.411 45.455 12.58 3.59 40.81 2.41
416 417 3.400995 CGTCGGCGTTTATTTGTACAAG 58.599 45.455 8.56 0.00 0.00 3.16
417 418 3.121611 CGTCGGCGTTTATTTGTACAAGA 59.878 43.478 8.56 0.90 0.00 3.02
418 419 4.201647 CGTCGGCGTTTATTTGTACAAGAT 60.202 41.667 8.56 8.17 0.00 2.40
419 420 5.004630 CGTCGGCGTTTATTTGTACAAGATA 59.995 40.000 8.56 7.27 0.00 1.98
420 421 6.454054 CGTCGGCGTTTATTTGTACAAGATAA 60.454 38.462 8.56 12.17 0.00 1.75
421 422 7.235777 GTCGGCGTTTATTTGTACAAGATAAA 58.764 34.615 20.23 20.23 0.00 1.40
422 423 7.215007 GTCGGCGTTTATTTGTACAAGATAAAC 59.785 37.037 29.12 29.12 40.36 2.01
464 465 7.450124 TTTTATAAAAATGTGCACCGGTAGA 57.550 32.000 15.69 0.00 0.00 2.59
465 466 7.450124 TTTATAAAAATGTGCACCGGTAGAA 57.550 32.000 15.69 0.00 0.00 2.10
466 467 5.968528 ATAAAAATGTGCACCGGTAGAAA 57.031 34.783 15.69 0.00 0.00 2.52
467 468 4.657436 AAAAATGTGCACCGGTAGAAAA 57.343 36.364 15.69 0.00 0.00 2.29
468 469 4.657436 AAAATGTGCACCGGTAGAAAAA 57.343 36.364 15.69 0.00 0.00 1.94
469 470 3.636282 AATGTGCACCGGTAGAAAAAC 57.364 42.857 15.69 0.00 0.00 2.43
470 471 2.335316 TGTGCACCGGTAGAAAAACT 57.665 45.000 15.69 0.00 0.00 2.66
471 472 2.215196 TGTGCACCGGTAGAAAAACTC 58.785 47.619 15.69 0.00 0.00 3.01
472 473 1.193874 GTGCACCGGTAGAAAAACTCG 59.806 52.381 6.87 0.00 0.00 4.18
473 474 1.068895 TGCACCGGTAGAAAAACTCGA 59.931 47.619 6.87 0.00 0.00 4.04
474 475 2.289195 TGCACCGGTAGAAAAACTCGAT 60.289 45.455 6.87 0.00 0.00 3.59
475 476 2.740447 GCACCGGTAGAAAAACTCGATT 59.260 45.455 6.87 0.00 0.00 3.34
476 477 3.187842 GCACCGGTAGAAAAACTCGATTT 59.812 43.478 6.87 0.00 0.00 2.17
477 478 4.389687 GCACCGGTAGAAAAACTCGATTTA 59.610 41.667 6.87 0.00 0.00 1.40
478 479 5.064325 GCACCGGTAGAAAAACTCGATTTAT 59.936 40.000 6.87 0.00 0.00 1.40
479 480 6.402875 GCACCGGTAGAAAAACTCGATTTATT 60.403 38.462 6.87 0.00 0.00 1.40
480 481 7.524065 CACCGGTAGAAAAACTCGATTTATTT 58.476 34.615 6.87 0.00 0.00 1.40
481 482 8.019094 CACCGGTAGAAAAACTCGATTTATTTT 58.981 33.333 6.87 0.00 0.00 1.82
482 483 8.570488 ACCGGTAGAAAAACTCGATTTATTTTT 58.430 29.630 4.49 8.46 38.03 1.94
483 484 9.058424 CCGGTAGAAAAACTCGATTTATTTTTC 57.942 33.333 19.25 19.25 45.95 2.29
491 492 8.965986 AAACTCGATTTATTTTTCTAAGCACC 57.034 30.769 0.00 0.00 0.00 5.01
492 493 7.923414 ACTCGATTTATTTTTCTAAGCACCT 57.077 32.000 0.00 0.00 0.00 4.00
493 494 7.975750 ACTCGATTTATTTTTCTAAGCACCTC 58.024 34.615 0.00 0.00 0.00 3.85
494 495 7.824779 ACTCGATTTATTTTTCTAAGCACCTCT 59.175 33.333 0.00 0.00 0.00 3.69
495 496 8.197988 TCGATTTATTTTTCTAAGCACCTCTC 57.802 34.615 0.00 0.00 0.00 3.20
496 497 7.822334 TCGATTTATTTTTCTAAGCACCTCTCA 59.178 33.333 0.00 0.00 0.00 3.27
497 498 8.616076 CGATTTATTTTTCTAAGCACCTCTCAT 58.384 33.333 0.00 0.00 0.00 2.90
500 501 8.635765 TTATTTTTCTAAGCACCTCTCATTGT 57.364 30.769 0.00 0.00 0.00 2.71
501 502 9.733556 TTATTTTTCTAAGCACCTCTCATTGTA 57.266 29.630 0.00 0.00 0.00 2.41
502 503 8.814038 ATTTTTCTAAGCACCTCTCATTGTAT 57.186 30.769 0.00 0.00 0.00 2.29
503 504 9.905713 ATTTTTCTAAGCACCTCTCATTGTATA 57.094 29.630 0.00 0.00 0.00 1.47
504 505 9.733556 TTTTTCTAAGCACCTCTCATTGTATAA 57.266 29.630 0.00 0.00 0.00 0.98
505 506 8.948631 TTTCTAAGCACCTCTCATTGTATAAG 57.051 34.615 0.00 0.00 0.00 1.73
506 507 7.055667 TCTAAGCACCTCTCATTGTATAAGG 57.944 40.000 0.00 0.00 0.00 2.69
507 508 5.957771 AAGCACCTCTCATTGTATAAGGA 57.042 39.130 0.00 0.00 0.00 3.36
508 509 5.283457 AGCACCTCTCATTGTATAAGGAC 57.717 43.478 0.00 0.00 0.00 3.85
509 510 4.051922 GCACCTCTCATTGTATAAGGACG 58.948 47.826 0.00 0.00 0.00 4.79
510 511 4.441634 GCACCTCTCATTGTATAAGGACGT 60.442 45.833 0.00 0.00 0.00 4.34
511 512 5.661458 CACCTCTCATTGTATAAGGACGTT 58.339 41.667 0.00 0.00 0.00 3.99
512 513 6.106673 CACCTCTCATTGTATAAGGACGTTT 58.893 40.000 0.00 0.00 0.00 3.60
513 514 6.594159 CACCTCTCATTGTATAAGGACGTTTT 59.406 38.462 0.00 0.00 0.00 2.43
514 515 6.594159 ACCTCTCATTGTATAAGGACGTTTTG 59.406 38.462 0.00 0.00 0.00 2.44
515 516 6.594159 CCTCTCATTGTATAAGGACGTTTTGT 59.406 38.462 0.00 0.00 0.00 2.83
516 517 7.762615 CCTCTCATTGTATAAGGACGTTTTGTA 59.237 37.037 0.00 0.00 0.00 2.41
517 518 8.470040 TCTCATTGTATAAGGACGTTTTGTAC 57.530 34.615 11.24 11.24 0.00 2.90
518 519 8.308931 TCTCATTGTATAAGGACGTTTTGTACT 58.691 33.333 16.02 1.87 46.72 2.73
524 525 3.896648 AGGACGTTTTGTACTTGCATG 57.103 42.857 0.00 0.00 39.37 4.06
525 526 3.472652 AGGACGTTTTGTACTTGCATGA 58.527 40.909 6.60 0.00 39.37 3.07
526 527 4.072131 AGGACGTTTTGTACTTGCATGAT 58.928 39.130 6.60 0.00 39.37 2.45
527 528 4.083324 AGGACGTTTTGTACTTGCATGATG 60.083 41.667 6.60 0.00 39.37 3.07
528 529 3.564511 ACGTTTTGTACTTGCATGATGC 58.435 40.909 11.12 11.12 45.29 3.91
547 548 4.805231 CCATGCACGGTCGGCGTA 62.805 66.667 6.85 0.00 0.00 4.42
548 549 3.254654 CATGCACGGTCGGCGTAG 61.255 66.667 6.85 1.85 0.00 3.51
562 563 3.899836 CGTAGCCGTGACTGTAGAG 57.100 57.895 0.00 0.00 0.00 2.43
563 564 0.377554 CGTAGCCGTGACTGTAGAGG 59.622 60.000 0.00 0.00 0.00 3.69
565 566 2.970639 GCCGTGACTGTAGAGGCA 59.029 61.111 12.92 0.00 46.48 4.75
592 593 5.756833 AGTCACGTAAACACTCTTTTTAGGG 59.243 40.000 0.00 0.00 31.52 3.53
608 609 8.319146 TCTTTTTAGGGAGATTCACGTAAAGAT 58.681 33.333 0.00 0.00 31.29 2.40
609 610 9.595823 CTTTTTAGGGAGATTCACGTAAAGATA 57.404 33.333 0.00 0.00 31.29 1.98
610 611 9.947433 TTTTTAGGGAGATTCACGTAAAGATAA 57.053 29.630 0.00 0.00 31.29 1.75
611 612 9.947433 TTTTAGGGAGATTCACGTAAAGATAAA 57.053 29.630 0.00 0.00 31.29 1.40
612 613 9.595823 TTTAGGGAGATTCACGTAAAGATAAAG 57.404 33.333 0.00 0.00 0.00 1.85
613 614 7.419711 AGGGAGATTCACGTAAAGATAAAGA 57.580 36.000 0.00 0.00 0.00 2.52
655 656 3.247648 ACGTAAAGACTTGATGCACACAC 59.752 43.478 0.00 0.00 0.00 3.82
683 686 1.459592 GTAAAGACTTGATGCGCGTGT 59.540 47.619 6.97 0.00 0.00 4.49
684 687 0.235665 AAAGACTTGATGCGCGTGTG 59.764 50.000 6.97 0.00 0.00 3.82
686 689 0.390340 AGACTTGATGCGCGTGTGAT 60.390 50.000 6.97 0.00 0.00 3.06
687 690 1.135112 AGACTTGATGCGCGTGTGATA 60.135 47.619 6.97 0.00 0.00 2.15
688 691 1.860950 GACTTGATGCGCGTGTGATAT 59.139 47.619 6.97 0.00 0.00 1.63
689 692 3.049912 GACTTGATGCGCGTGTGATATA 58.950 45.455 6.97 0.00 0.00 0.86
690 693 3.052745 ACTTGATGCGCGTGTGATATAG 58.947 45.455 6.97 0.00 0.00 1.31
691 694 1.418373 TGATGCGCGTGTGATATAGC 58.582 50.000 6.97 0.00 0.00 2.97
774 782 2.100252 CGGCTCCTGATTTACGTAGGAA 59.900 50.000 5.56 0.00 39.93 3.36
786 794 1.413812 ACGTAGGAAACCAACCGAACT 59.586 47.619 0.00 0.00 0.00 3.01
787 795 2.064014 CGTAGGAAACCAACCGAACTC 58.936 52.381 0.00 0.00 0.00 3.01
788 796 2.064014 GTAGGAAACCAACCGAACTCG 58.936 52.381 0.00 0.00 39.44 4.18
789 797 0.466963 AGGAAACCAACCGAACTCGT 59.533 50.000 0.00 0.00 37.74 4.18
790 798 0.863799 GGAAACCAACCGAACTCGTC 59.136 55.000 0.00 0.00 37.74 4.20
819 828 5.408356 AGCGAAGTTGTAACGTGATTATCT 58.592 37.500 0.00 0.00 0.00 1.98
823 832 7.191551 CGAAGTTGTAACGTGATTATCTCCTA 58.808 38.462 0.00 0.00 0.00 2.94
824 833 7.699391 CGAAGTTGTAACGTGATTATCTCCTAA 59.301 37.037 0.00 0.00 0.00 2.69
825 834 9.362539 GAAGTTGTAACGTGATTATCTCCTAAA 57.637 33.333 0.00 0.00 0.00 1.85
826 835 9.715121 AAGTTGTAACGTGATTATCTCCTAAAA 57.285 29.630 0.00 0.00 0.00 1.52
827 836 9.367444 AGTTGTAACGTGATTATCTCCTAAAAG 57.633 33.333 0.00 0.00 0.00 2.27
963 977 8.144478 TCCTAATCTAATCTGATCAAAACCTCG 58.856 37.037 0.00 0.00 0.00 4.63
969 983 2.300152 TCTGATCAAAACCTCGACAGCT 59.700 45.455 0.00 0.00 0.00 4.24
1149 1169 0.904865 TGGGCAAGTCGATCCTGTCT 60.905 55.000 0.00 0.00 0.00 3.41
1410 1430 3.011517 ATCACCCGGGAGCAGCTT 61.012 61.111 32.02 0.00 0.00 3.74
1455 1475 2.202756 GCCGACTCCATCACCGTC 60.203 66.667 0.00 0.00 0.00 4.79
1794 1823 2.675423 TACACCGACGAGCTGCCT 60.675 61.111 0.00 0.00 0.00 4.75
2156 2232 7.514784 TGCATGTGGTACGTATACTTAGTAT 57.485 36.000 9.96 9.96 33.05 2.12
2157 2233 7.587629 TGCATGTGGTACGTATACTTAGTATC 58.412 38.462 8.29 0.73 30.79 2.24
2158 2234 7.446319 TGCATGTGGTACGTATACTTAGTATCT 59.554 37.037 8.29 0.00 30.79 1.98
2159 2235 8.939929 GCATGTGGTACGTATACTTAGTATCTA 58.060 37.037 8.29 0.00 30.79 1.98
2179 2255 3.947612 AGGGTAATCTCTCGGACTACA 57.052 47.619 0.00 0.00 29.22 2.74
2180 2256 4.456662 AGGGTAATCTCTCGGACTACAT 57.543 45.455 0.00 0.00 29.22 2.29
2233 2313 6.948353 TGATCGATATAGCTTTGTTTTCTGC 58.052 36.000 0.00 0.00 0.00 4.26
2246 2326 2.814336 GTTTTCTGCTGGAAGGTCGAAT 59.186 45.455 0.00 0.00 35.16 3.34
2256 2337 6.657541 TGCTGGAAGGTCGAATTTTATAGTTT 59.342 34.615 0.00 0.00 0.00 2.66
2338 2419 6.798427 AGCAAGAGTCCAGTTTATGATAGA 57.202 37.500 0.00 0.00 0.00 1.98
2339 2420 6.578023 AGCAAGAGTCCAGTTTATGATAGAC 58.422 40.000 0.00 0.00 0.00 2.59
2346 2427 4.278669 TCCAGTTTATGATAGACGCCTCTC 59.721 45.833 0.00 0.00 0.00 3.20
2373 2462 7.706607 TCATCGTCGTGAGAAAGAATTTGATAT 59.293 33.333 0.00 0.00 45.01 1.63
2374 2463 8.968242 CATCGTCGTGAGAAAGAATTTGATATA 58.032 33.333 0.00 0.00 45.01 0.86
2375 2464 8.336498 TCGTCGTGAGAAAGAATTTGATATAC 57.664 34.615 0.00 0.00 45.01 1.47
2376 2465 7.434307 TCGTCGTGAGAAAGAATTTGATATACC 59.566 37.037 0.00 0.00 45.01 2.73
2377 2466 7.435488 CGTCGTGAGAAAGAATTTGATATACCT 59.565 37.037 0.00 0.00 45.01 3.08
2408 2498 8.333235 AGTTAGGTTATTGGTCATATCCACAAA 58.667 33.333 0.00 0.00 37.20 2.83
2409 2499 8.962679 GTTAGGTTATTGGTCATATCCACAAAA 58.037 33.333 0.00 0.00 37.20 2.44
2889 2980 5.421212 AGTTATACGAGTCGAGTCAATCC 57.579 43.478 21.50 7.34 0.00 3.01
3003 3094 2.103094 CTCGAATTCCAGCCCTACATGA 59.897 50.000 0.00 0.00 0.00 3.07
3004 3095 2.705658 TCGAATTCCAGCCCTACATGAT 59.294 45.455 0.00 0.00 0.00 2.45
3005 3096 3.901222 TCGAATTCCAGCCCTACATGATA 59.099 43.478 0.00 0.00 0.00 2.15
3040 3134 4.441087 GCTTTCATGTTCTTGGTTTTCGTC 59.559 41.667 0.00 0.00 0.00 4.20
3042 3136 2.546368 TCATGTTCTTGGTTTTCGTCGG 59.454 45.455 0.00 0.00 0.00 4.79
3043 3137 0.658897 TGTTCTTGGTTTTCGTCGGC 59.341 50.000 0.00 0.00 0.00 5.54
3064 3158 2.482721 CGTTTTCGCTGGGTTATGAACT 59.517 45.455 0.00 0.00 36.22 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.391144 GCGAATCAATGCCAAAGTTGC 59.609 47.619 0.00 0.00 0.00 4.17
11 12 4.612536 CCCGCGGCGAATCAATGC 62.613 66.667 25.92 0.00 0.00 3.56
12 13 1.987704 TTTCCCGCGGCGAATCAATG 61.988 55.000 25.92 2.11 0.00 2.82
13 14 1.747367 TTTCCCGCGGCGAATCAAT 60.747 52.632 25.92 0.00 0.00 2.57
14 15 2.358860 TTTCCCGCGGCGAATCAA 60.359 55.556 25.92 7.35 0.00 2.57
15 16 3.122323 GTTTCCCGCGGCGAATCA 61.122 61.111 25.92 8.08 0.00 2.57
16 17 4.218478 CGTTTCCCGCGGCGAATC 62.218 66.667 25.92 20.47 0.00 2.52
17 18 4.745751 TCGTTTCCCGCGGCGAAT 62.746 61.111 25.92 0.00 36.19 3.34
24 25 3.564027 CATCGCCTCGTTTCCCGC 61.564 66.667 0.00 0.00 36.19 6.13
25 26 1.878522 CTCATCGCCTCGTTTCCCG 60.879 63.158 0.00 0.00 38.13 5.14
26 27 1.521681 CCTCATCGCCTCGTTTCCC 60.522 63.158 0.00 0.00 0.00 3.97
27 28 0.806492 GTCCTCATCGCCTCGTTTCC 60.806 60.000 0.00 0.00 0.00 3.13
28 29 0.108804 TGTCCTCATCGCCTCGTTTC 60.109 55.000 0.00 0.00 0.00 2.78
29 30 0.320374 TTGTCCTCATCGCCTCGTTT 59.680 50.000 0.00 0.00 0.00 3.60
30 31 0.537188 ATTGTCCTCATCGCCTCGTT 59.463 50.000 0.00 0.00 0.00 3.85
31 32 0.179100 CATTGTCCTCATCGCCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
32 33 0.103026 TCATTGTCCTCATCGCCTCG 59.897 55.000 0.00 0.00 0.00 4.63
33 34 2.208431 CTTCATTGTCCTCATCGCCTC 58.792 52.381 0.00 0.00 0.00 4.70
34 35 1.134280 CCTTCATTGTCCTCATCGCCT 60.134 52.381 0.00 0.00 0.00 5.52
35 36 1.303309 CCTTCATTGTCCTCATCGCC 58.697 55.000 0.00 0.00 0.00 5.54
36 37 1.303309 CCCTTCATTGTCCTCATCGC 58.697 55.000 0.00 0.00 0.00 4.58
37 38 1.959042 CCCCTTCATTGTCCTCATCG 58.041 55.000 0.00 0.00 0.00 3.84
38 39 1.685148 GCCCCTTCATTGTCCTCATC 58.315 55.000 0.00 0.00 0.00 2.92
39 40 0.107017 CGCCCCTTCATTGTCCTCAT 60.107 55.000 0.00 0.00 0.00 2.90
40 41 1.198094 TCGCCCCTTCATTGTCCTCA 61.198 55.000 0.00 0.00 0.00 3.86
41 42 0.462759 CTCGCCCCTTCATTGTCCTC 60.463 60.000 0.00 0.00 0.00 3.71
42 43 0.909610 TCTCGCCCCTTCATTGTCCT 60.910 55.000 0.00 0.00 0.00 3.85
43 44 0.035439 TTCTCGCCCCTTCATTGTCC 60.035 55.000 0.00 0.00 0.00 4.02
44 45 1.066143 TCTTCTCGCCCCTTCATTGTC 60.066 52.381 0.00 0.00 0.00 3.18
45 46 0.984230 TCTTCTCGCCCCTTCATTGT 59.016 50.000 0.00 0.00 0.00 2.71
46 47 1.661341 CTCTTCTCGCCCCTTCATTG 58.339 55.000 0.00 0.00 0.00 2.82
47 48 0.543749 CCTCTTCTCGCCCCTTCATT 59.456 55.000 0.00 0.00 0.00 2.57
48 49 1.341156 CCCTCTTCTCGCCCCTTCAT 61.341 60.000 0.00 0.00 0.00 2.57
49 50 1.990060 CCCTCTTCTCGCCCCTTCA 60.990 63.158 0.00 0.00 0.00 3.02
50 51 0.686769 TACCCTCTTCTCGCCCCTTC 60.687 60.000 0.00 0.00 0.00 3.46
51 52 0.688087 CTACCCTCTTCTCGCCCCTT 60.688 60.000 0.00 0.00 0.00 3.95
52 53 1.075896 CTACCCTCTTCTCGCCCCT 60.076 63.158 0.00 0.00 0.00 4.79
53 54 1.076192 TCTACCCTCTTCTCGCCCC 60.076 63.158 0.00 0.00 0.00 5.80
54 55 0.396001 ACTCTACCCTCTTCTCGCCC 60.396 60.000 0.00 0.00 0.00 6.13
55 56 1.026584 GACTCTACCCTCTTCTCGCC 58.973 60.000 0.00 0.00 0.00 5.54
56 57 0.658897 CGACTCTACCCTCTTCTCGC 59.341 60.000 0.00 0.00 0.00 5.03
57 58 0.658897 GCGACTCTACCCTCTTCTCG 59.341 60.000 0.00 0.00 0.00 4.04
58 59 1.673920 CAGCGACTCTACCCTCTTCTC 59.326 57.143 0.00 0.00 0.00 2.87
59 60 1.282447 TCAGCGACTCTACCCTCTTCT 59.718 52.381 0.00 0.00 0.00 2.85
60 61 1.402613 GTCAGCGACTCTACCCTCTTC 59.597 57.143 0.00 0.00 0.00 2.87
61 62 1.465794 GTCAGCGACTCTACCCTCTT 58.534 55.000 0.00 0.00 0.00 2.85
62 63 0.745128 CGTCAGCGACTCTACCCTCT 60.745 60.000 7.03 0.00 41.33 3.69
63 64 1.722677 CGTCAGCGACTCTACCCTC 59.277 63.158 7.03 0.00 41.33 4.30
64 65 2.408241 GCGTCAGCGACTCTACCCT 61.408 63.158 7.03 0.00 41.33 4.34
65 66 2.102553 GCGTCAGCGACTCTACCC 59.897 66.667 7.03 0.00 41.33 3.69
95 96 1.587613 TGTTTTGGCGCGAAACAGC 60.588 52.632 26.68 16.92 41.19 4.40
96 97 4.700037 TGTTTTGGCGCGAAACAG 57.300 50.000 26.68 0.00 41.19 3.16
97 98 0.171455 AACTGTTTTGGCGCGAAACA 59.829 45.000 27.74 27.74 43.03 2.83
98 99 0.843872 GAACTGTTTTGGCGCGAAAC 59.156 50.000 23.22 23.22 38.01 2.78
99 100 0.590230 CGAACTGTTTTGGCGCGAAA 60.590 50.000 13.91 13.91 0.00 3.46
100 101 1.010574 CGAACTGTTTTGGCGCGAA 60.011 52.632 12.10 0.00 0.00 4.70
101 102 2.629210 CGAACTGTTTTGGCGCGA 59.371 55.556 12.10 0.00 0.00 5.87
102 103 3.091022 GCGAACTGTTTTGGCGCG 61.091 61.111 0.00 0.00 38.24 6.86
103 104 2.729491 GGCGAACTGTTTTGGCGC 60.729 61.111 13.79 13.79 46.20 6.53
104 105 2.050442 GGGCGAACTGTTTTGGCG 60.050 61.111 11.96 5.00 41.72 5.69
105 106 2.338620 GGGGCGAACTGTTTTGGC 59.661 61.111 10.46 10.46 40.35 4.52
106 107 2.642700 CGGGGCGAACTGTTTTGG 59.357 61.111 0.00 0.00 0.00 3.28
107 108 2.642700 CCGGGGCGAACTGTTTTG 59.357 61.111 0.00 0.00 0.00 2.44
108 109 3.292159 GCCGGGGCGAACTGTTTT 61.292 61.111 2.18 0.00 0.00 2.43
172 173 3.896863 CTTGGGCCGAAAACAGCGC 62.897 63.158 0.00 0.00 41.90 5.92
173 174 2.255252 CTTGGGCCGAAAACAGCG 59.745 61.111 0.54 0.00 0.00 5.18
174 175 2.049156 GCTTGGGCCGAAAACAGC 60.049 61.111 0.54 0.00 0.00 4.40
185 186 2.489751 GATTTTCGCCGGCTTGGG 59.510 61.111 26.68 9.07 38.63 4.12
186 187 2.100216 CGATTTTCGCCGGCTTGG 59.900 61.111 26.68 9.50 42.50 3.61
187 188 2.100216 CCGATTTTCGCCGGCTTG 59.900 61.111 26.68 10.37 38.82 4.01
188 189 3.131478 CCCGATTTTCGCCGGCTT 61.131 61.111 26.68 3.40 44.07 4.35
191 192 3.573491 GAGCCCGATTTTCGCCGG 61.573 66.667 0.00 0.00 44.94 6.13
192 193 3.573491 GGAGCCCGATTTTCGCCG 61.573 66.667 0.00 0.00 38.82 6.46
193 194 2.124695 AGGAGCCCGATTTTCGCC 60.125 61.111 0.00 0.00 38.82 5.54
194 195 2.472909 CCAGGAGCCCGATTTTCGC 61.473 63.158 0.00 0.00 38.82 4.70
195 196 1.819632 CCCAGGAGCCCGATTTTCG 60.820 63.158 0.00 0.00 40.07 3.46
196 197 1.453928 CCCCAGGAGCCCGATTTTC 60.454 63.158 0.00 0.00 0.00 2.29
197 198 2.683475 CCCCAGGAGCCCGATTTT 59.317 61.111 0.00 0.00 0.00 1.82
198 199 3.420482 CCCCCAGGAGCCCGATTT 61.420 66.667 0.00 0.00 33.47 2.17
216 217 2.577763 GAAAAATCGGCCCAGTCGCG 62.578 60.000 0.00 0.00 0.00 5.87
217 218 1.136774 GAAAAATCGGCCCAGTCGC 59.863 57.895 0.00 0.00 0.00 5.19
218 219 1.423845 CGAAAAATCGGCCCAGTCG 59.576 57.895 0.00 0.00 0.00 4.18
219 220 1.800681 CCGAAAAATCGGCCCAGTC 59.199 57.895 4.12 0.00 46.76 3.51
220 221 3.996614 CCGAAAAATCGGCCCAGT 58.003 55.556 4.12 0.00 46.76 4.00
236 237 4.577246 TGTTTTTGCACCGGCGCC 62.577 61.111 19.07 19.07 45.35 6.53
237 238 2.167861 TTTGTTTTTGCACCGGCGC 61.168 52.632 7.72 7.72 45.35 6.53
238 239 1.633697 GTTTGTTTTTGCACCGGCG 59.366 52.632 0.00 0.00 45.35 6.46
239 240 1.633697 CGTTTGTTTTTGCACCGGC 59.366 52.632 0.00 0.00 41.68 6.13
240 241 1.633697 GCGTTTGTTTTTGCACCGG 59.366 52.632 0.00 0.00 0.00 5.28
241 242 0.804156 AGGCGTTTGTTTTTGCACCG 60.804 50.000 0.00 0.00 0.00 4.94
242 243 0.649993 CAGGCGTTTGTTTTTGCACC 59.350 50.000 0.00 0.00 0.00 5.01
243 244 0.649993 CCAGGCGTTTGTTTTTGCAC 59.350 50.000 0.00 0.00 0.00 4.57
244 245 0.460987 CCCAGGCGTTTGTTTTTGCA 60.461 50.000 0.00 0.00 0.00 4.08
245 246 1.157257 CCCCAGGCGTTTGTTTTTGC 61.157 55.000 0.00 0.00 0.00 3.68
246 247 0.461961 TCCCCAGGCGTTTGTTTTTG 59.538 50.000 0.00 0.00 0.00 2.44
247 248 0.750249 CTCCCCAGGCGTTTGTTTTT 59.250 50.000 0.00 0.00 0.00 1.94
248 249 1.112916 CCTCCCCAGGCGTTTGTTTT 61.113 55.000 0.00 0.00 30.98 2.43
249 250 1.530655 CCTCCCCAGGCGTTTGTTT 60.531 57.895 0.00 0.00 30.98 2.83
250 251 2.115266 CCTCCCCAGGCGTTTGTT 59.885 61.111 0.00 0.00 30.98 2.83
258 259 1.768077 CTAGGAAGGCCTCCCCAGG 60.768 68.421 22.02 12.28 46.81 4.45
259 260 1.768077 CCTAGGAAGGCCTCCCCAG 60.768 68.421 22.02 11.50 46.81 4.45
260 261 2.372688 CCTAGGAAGGCCTCCCCA 59.627 66.667 22.02 1.00 46.81 4.96
261 262 2.448736 CCCTAGGAAGGCCTCCCC 60.449 72.222 3.35 10.50 46.81 4.81
262 263 2.448736 CCCCTAGGAAGGCCTCCC 60.449 72.222 11.48 0.58 46.81 4.30
263 264 3.172106 GCCCCTAGGAAGGCCTCC 61.172 72.222 16.23 9.66 45.54 4.30
284 285 1.149401 GGGTAAGGGCATCTCCAGC 59.851 63.158 0.00 0.00 36.21 4.85
285 286 1.447643 CGGGTAAGGGCATCTCCAG 59.552 63.158 0.00 0.00 36.21 3.86
286 287 2.070039 CCGGGTAAGGGCATCTCCA 61.070 63.158 0.00 0.00 36.21 3.86
287 288 2.829592 CCGGGTAAGGGCATCTCC 59.170 66.667 0.00 0.00 0.00 3.71
294 295 4.832608 GCACTCGCCGGGTAAGGG 62.833 72.222 2.18 0.00 0.00 3.95
296 297 4.124351 TCGCACTCGCCGGGTAAG 62.124 66.667 2.18 0.00 35.26 2.34
297 298 4.124351 CTCGCACTCGCCGGGTAA 62.124 66.667 2.18 0.00 35.26 2.85
300 301 4.933064 GATCTCGCACTCGCCGGG 62.933 72.222 2.18 0.00 35.26 5.73
314 315 2.354773 CTAAGGTCGCCGCCGATC 60.355 66.667 0.00 0.00 46.38 3.69
315 316 3.912907 CCTAAGGTCGCCGCCGAT 61.913 66.667 0.00 0.00 46.38 4.18
321 322 2.062177 TACCAGGCCTAAGGTCGCC 61.062 63.158 17.79 0.00 46.09 5.54
322 323 1.143401 GTACCAGGCCTAAGGTCGC 59.857 63.158 17.79 9.09 39.31 5.19
323 324 0.899720 TTGTACCAGGCCTAAGGTCG 59.100 55.000 17.79 0.00 39.31 4.79
324 325 2.421529 CCATTGTACCAGGCCTAAGGTC 60.422 54.545 17.79 10.47 39.31 3.85
325 326 1.564348 CCATTGTACCAGGCCTAAGGT 59.436 52.381 18.27 18.27 41.89 3.50
326 327 1.133792 CCCATTGTACCAGGCCTAAGG 60.134 57.143 3.98 6.18 0.00 2.69
327 328 1.843851 TCCCATTGTACCAGGCCTAAG 59.156 52.381 3.98 1.76 0.00 2.18
328 329 1.843851 CTCCCATTGTACCAGGCCTAA 59.156 52.381 3.98 0.00 0.00 2.69
329 330 1.009060 TCTCCCATTGTACCAGGCCTA 59.991 52.381 3.98 0.00 0.00 3.93
330 331 0.253160 TCTCCCATTGTACCAGGCCT 60.253 55.000 0.00 0.00 0.00 5.19
331 332 0.846693 ATCTCCCATTGTACCAGGCC 59.153 55.000 0.00 0.00 0.00 5.19
332 333 4.373156 AATATCTCCCATTGTACCAGGC 57.627 45.455 0.00 0.00 0.00 4.85
333 334 6.476378 CCTAAATATCTCCCATTGTACCAGG 58.524 44.000 0.00 0.00 0.00 4.45
334 335 6.476378 CCCTAAATATCTCCCATTGTACCAG 58.524 44.000 0.00 0.00 0.00 4.00
335 336 5.312178 CCCCTAAATATCTCCCATTGTACCA 59.688 44.000 0.00 0.00 0.00 3.25
336 337 5.550403 TCCCCTAAATATCTCCCATTGTACC 59.450 44.000 0.00 0.00 0.00 3.34
337 338 6.500751 TCTCCCCTAAATATCTCCCATTGTAC 59.499 42.308 0.00 0.00 0.00 2.90
338 339 6.639938 TCTCCCCTAAATATCTCCCATTGTA 58.360 40.000 0.00 0.00 0.00 2.41
339 340 5.486332 TCTCCCCTAAATATCTCCCATTGT 58.514 41.667 0.00 0.00 0.00 2.71
340 341 6.649041 ATCTCCCCTAAATATCTCCCATTG 57.351 41.667 0.00 0.00 0.00 2.82
341 342 7.500434 AGTATCTCCCCTAAATATCTCCCATT 58.500 38.462 0.00 0.00 0.00 3.16
342 343 7.074807 AGTATCTCCCCTAAATATCTCCCAT 57.925 40.000 0.00 0.00 0.00 4.00
343 344 6.500490 AGTATCTCCCCTAAATATCTCCCA 57.500 41.667 0.00 0.00 0.00 4.37
344 345 8.345306 TCTAAGTATCTCCCCTAAATATCTCCC 58.655 40.741 0.00 0.00 0.00 4.30
345 346 9.771140 TTCTAAGTATCTCCCCTAAATATCTCC 57.229 37.037 0.00 0.00 0.00 3.71
387 388 3.809918 ATAAACGCCGACGCTTAAAAA 57.190 38.095 0.00 0.00 45.53 1.94
388 389 3.809918 AATAAACGCCGACGCTTAAAA 57.190 38.095 0.00 0.00 45.53 1.52
389 390 3.059051 ACAAATAAACGCCGACGCTTAAA 60.059 39.130 0.00 0.00 45.53 1.52
390 391 2.479656 ACAAATAAACGCCGACGCTTAA 59.520 40.909 0.00 0.00 45.53 1.85
391 392 2.067766 ACAAATAAACGCCGACGCTTA 58.932 42.857 0.00 0.00 45.53 3.09
392 393 0.869730 ACAAATAAACGCCGACGCTT 59.130 45.000 0.00 0.00 45.53 4.68
393 394 1.391144 GTACAAATAAACGCCGACGCT 59.609 47.619 0.00 0.00 45.53 5.07
394 395 1.126479 TGTACAAATAAACGCCGACGC 59.874 47.619 0.00 0.00 45.53 5.19
396 397 4.650545 TCTTGTACAAATAAACGCCGAC 57.349 40.909 10.03 0.00 0.00 4.79
397 398 6.964741 TTATCTTGTACAAATAAACGCCGA 57.035 33.333 10.03 0.41 0.00 5.54
398 399 7.414070 GTTTATCTTGTACAAATAAACGCCG 57.586 36.000 27.50 12.00 36.61 6.46
439 440 7.883217 TCTACCGGTGCACATTTTTATAAAAA 58.117 30.769 22.20 22.20 41.59 1.94
440 441 7.450124 TCTACCGGTGCACATTTTTATAAAA 57.550 32.000 19.93 6.54 0.00 1.52
441 442 7.450124 TTCTACCGGTGCACATTTTTATAAA 57.550 32.000 19.93 0.00 0.00 1.40
442 443 7.450124 TTTCTACCGGTGCACATTTTTATAA 57.550 32.000 19.93 0.68 0.00 0.98
443 444 7.450124 TTTTCTACCGGTGCACATTTTTATA 57.550 32.000 19.93 0.00 0.00 0.98
444 445 5.968528 TTTCTACCGGTGCACATTTTTAT 57.031 34.783 19.93 0.00 0.00 1.40
445 446 5.769484 TTTTCTACCGGTGCACATTTTTA 57.231 34.783 19.93 1.15 0.00 1.52
446 447 4.657436 TTTTCTACCGGTGCACATTTTT 57.343 36.364 19.93 0.00 0.00 1.94
447 448 4.098807 AGTTTTTCTACCGGTGCACATTTT 59.901 37.500 19.93 1.79 0.00 1.82
448 449 3.634910 AGTTTTTCTACCGGTGCACATTT 59.365 39.130 19.93 3.75 0.00 2.32
449 450 3.219281 AGTTTTTCTACCGGTGCACATT 58.781 40.909 19.93 4.14 0.00 2.71
450 451 2.812011 GAGTTTTTCTACCGGTGCACAT 59.188 45.455 19.93 5.93 0.00 3.21
451 452 2.215196 GAGTTTTTCTACCGGTGCACA 58.785 47.619 19.93 0.00 0.00 4.57
452 453 1.193874 CGAGTTTTTCTACCGGTGCAC 59.806 52.381 19.93 8.80 0.00 4.57
453 454 1.068895 TCGAGTTTTTCTACCGGTGCA 59.931 47.619 19.93 0.00 0.00 4.57
454 455 1.787012 TCGAGTTTTTCTACCGGTGC 58.213 50.000 19.93 0.00 0.00 5.01
455 456 6.657836 ATAAATCGAGTTTTTCTACCGGTG 57.342 37.500 19.93 7.59 0.00 4.94
456 457 7.677454 AAATAAATCGAGTTTTTCTACCGGT 57.323 32.000 13.98 13.98 0.00 5.28
457 458 8.959734 AAAAATAAATCGAGTTTTTCTACCGG 57.040 30.769 2.37 0.00 31.46 5.28
465 466 9.406828 GGTGCTTAGAAAAATAAATCGAGTTTT 57.593 29.630 2.37 0.00 29.82 2.43
466 467 8.793592 AGGTGCTTAGAAAAATAAATCGAGTTT 58.206 29.630 2.37 0.82 0.00 2.66
467 468 8.336801 AGGTGCTTAGAAAAATAAATCGAGTT 57.663 30.769 2.72 2.72 0.00 3.01
468 469 7.824779 AGAGGTGCTTAGAAAAATAAATCGAGT 59.175 33.333 0.00 0.00 0.00 4.18
469 470 8.202745 AGAGGTGCTTAGAAAAATAAATCGAG 57.797 34.615 0.00 0.00 0.00 4.04
470 471 7.822334 TGAGAGGTGCTTAGAAAAATAAATCGA 59.178 33.333 0.00 0.00 0.00 3.59
471 472 7.974675 TGAGAGGTGCTTAGAAAAATAAATCG 58.025 34.615 0.00 0.00 0.00 3.34
474 475 9.077885 ACAATGAGAGGTGCTTAGAAAAATAAA 57.922 29.630 0.00 0.00 0.00 1.40
475 476 8.635765 ACAATGAGAGGTGCTTAGAAAAATAA 57.364 30.769 0.00 0.00 0.00 1.40
476 477 9.905713 ATACAATGAGAGGTGCTTAGAAAAATA 57.094 29.630 0.00 0.00 0.00 1.40
477 478 8.814038 ATACAATGAGAGGTGCTTAGAAAAAT 57.186 30.769 0.00 0.00 0.00 1.82
478 479 9.733556 TTATACAATGAGAGGTGCTTAGAAAAA 57.266 29.630 0.00 0.00 0.00 1.94
479 480 9.383519 CTTATACAATGAGAGGTGCTTAGAAAA 57.616 33.333 0.00 0.00 0.00 2.29
480 481 7.987458 CCTTATACAATGAGAGGTGCTTAGAAA 59.013 37.037 0.00 0.00 0.00 2.52
481 482 7.344612 TCCTTATACAATGAGAGGTGCTTAGAA 59.655 37.037 0.00 0.00 0.00 2.10
482 483 6.839134 TCCTTATACAATGAGAGGTGCTTAGA 59.161 38.462 0.00 0.00 0.00 2.10
483 484 6.926272 GTCCTTATACAATGAGAGGTGCTTAG 59.074 42.308 0.00 0.00 0.00 2.18
484 485 6.461092 CGTCCTTATACAATGAGAGGTGCTTA 60.461 42.308 0.00 0.00 0.00 3.09
485 486 5.675538 GTCCTTATACAATGAGAGGTGCTT 58.324 41.667 0.00 0.00 0.00 3.91
486 487 4.202161 CGTCCTTATACAATGAGAGGTGCT 60.202 45.833 0.00 0.00 0.00 4.40
487 488 4.051922 CGTCCTTATACAATGAGAGGTGC 58.948 47.826 0.00 0.00 0.00 5.01
488 489 5.263968 ACGTCCTTATACAATGAGAGGTG 57.736 43.478 0.00 0.00 0.00 4.00
489 490 5.934402 AACGTCCTTATACAATGAGAGGT 57.066 39.130 0.00 0.00 0.00 3.85
490 491 6.594159 ACAAAACGTCCTTATACAATGAGAGG 59.406 38.462 0.00 0.00 0.00 3.69
491 492 7.596749 ACAAAACGTCCTTATACAATGAGAG 57.403 36.000 0.00 0.00 0.00 3.20
492 493 8.308931 AGTACAAAACGTCCTTATACAATGAGA 58.691 33.333 0.00 0.00 0.00 3.27
493 494 8.475331 AGTACAAAACGTCCTTATACAATGAG 57.525 34.615 0.00 0.00 0.00 2.90
494 495 8.714179 CAAGTACAAAACGTCCTTATACAATGA 58.286 33.333 0.00 0.00 0.00 2.57
495 496 7.480542 GCAAGTACAAAACGTCCTTATACAATG 59.519 37.037 0.00 0.00 0.00 2.82
496 497 7.173562 TGCAAGTACAAAACGTCCTTATACAAT 59.826 33.333 0.00 0.00 0.00 2.71
497 498 6.482641 TGCAAGTACAAAACGTCCTTATACAA 59.517 34.615 0.00 0.00 0.00 2.41
498 499 5.990386 TGCAAGTACAAAACGTCCTTATACA 59.010 36.000 0.00 0.00 0.00 2.29
499 500 6.470557 TGCAAGTACAAAACGTCCTTATAC 57.529 37.500 0.00 0.00 0.00 1.47
500 501 6.874664 TCATGCAAGTACAAAACGTCCTTATA 59.125 34.615 0.00 0.00 0.00 0.98
501 502 5.703592 TCATGCAAGTACAAAACGTCCTTAT 59.296 36.000 0.00 0.00 0.00 1.73
502 503 5.057819 TCATGCAAGTACAAAACGTCCTTA 58.942 37.500 0.00 0.00 0.00 2.69
503 504 3.880490 TCATGCAAGTACAAAACGTCCTT 59.120 39.130 0.00 0.00 0.00 3.36
504 505 3.472652 TCATGCAAGTACAAAACGTCCT 58.527 40.909 0.00 0.00 0.00 3.85
505 506 3.889196 TCATGCAAGTACAAAACGTCC 57.111 42.857 0.00 0.00 0.00 4.79
506 507 3.603770 GCATCATGCAAGTACAAAACGTC 59.396 43.478 4.20 0.00 44.26 4.34
507 508 3.564511 GCATCATGCAAGTACAAAACGT 58.435 40.909 4.20 0.00 44.26 3.99
542 543 1.226603 CTACAGTCACGGCTACGCC 60.227 63.158 0.00 0.00 46.75 5.68
543 544 0.248134 CTCTACAGTCACGGCTACGC 60.248 60.000 0.00 0.00 46.04 4.42
545 546 0.100861 GCCTCTACAGTCACGGCTAC 59.899 60.000 0.00 0.00 37.76 3.58
546 547 0.323087 TGCCTCTACAGTCACGGCTA 60.323 55.000 0.00 0.00 41.25 3.93
547 548 0.972983 ATGCCTCTACAGTCACGGCT 60.973 55.000 0.00 0.00 41.25 5.52
548 549 0.528684 GATGCCTCTACAGTCACGGC 60.529 60.000 0.00 0.00 41.06 5.68
549 550 0.817654 TGATGCCTCTACAGTCACGG 59.182 55.000 0.00 0.00 0.00 4.94
550 551 1.474478 ACTGATGCCTCTACAGTCACG 59.526 52.381 0.00 0.00 40.19 4.35
554 555 1.474478 CGTGACTGATGCCTCTACAGT 59.526 52.381 0.00 0.00 45.62 3.55
555 556 1.474478 ACGTGACTGATGCCTCTACAG 59.526 52.381 0.00 0.00 37.62 2.74
556 557 1.545841 ACGTGACTGATGCCTCTACA 58.454 50.000 0.00 0.00 0.00 2.74
557 558 3.777465 TTACGTGACTGATGCCTCTAC 57.223 47.619 0.00 0.00 0.00 2.59
558 559 3.508402 TGTTTACGTGACTGATGCCTCTA 59.492 43.478 0.00 0.00 0.00 2.43
559 560 2.299013 TGTTTACGTGACTGATGCCTCT 59.701 45.455 0.00 0.00 0.00 3.69
560 561 2.412089 GTGTTTACGTGACTGATGCCTC 59.588 50.000 0.00 0.00 0.00 4.70
561 562 2.037251 AGTGTTTACGTGACTGATGCCT 59.963 45.455 0.00 0.00 0.00 4.75
562 563 2.412089 GAGTGTTTACGTGACTGATGCC 59.588 50.000 0.00 0.00 0.00 4.40
563 564 3.318017 AGAGTGTTTACGTGACTGATGC 58.682 45.455 0.00 0.00 0.00 3.91
564 565 5.907197 AAAGAGTGTTTACGTGACTGATG 57.093 39.130 0.00 0.00 0.00 3.07
565 566 6.920569 AAAAAGAGTGTTTACGTGACTGAT 57.079 33.333 0.00 0.00 0.00 2.90
678 681 3.305398 AAGCCTAGCTATATCACACGC 57.695 47.619 0.00 0.00 38.25 5.34
679 682 7.891183 ATTAAAAGCCTAGCTATATCACACG 57.109 36.000 0.00 0.00 38.25 4.49
706 709 5.773176 ACCTGTTTCCCAGTTCGAATAAAAT 59.227 36.000 0.00 0.00 39.74 1.82
714 718 2.536761 TGTACCTGTTTCCCAGTTCG 57.463 50.000 0.00 0.00 39.74 3.95
715 719 4.694037 GTGTATGTACCTGTTTCCCAGTTC 59.306 45.833 0.00 0.00 39.74 3.01
722 726 1.657094 CGCCGTGTATGTACCTGTTTC 59.343 52.381 0.00 0.00 0.00 2.78
774 782 1.508632 CATGACGAGTTCGGTTGGTT 58.491 50.000 6.48 0.00 44.95 3.67
786 794 0.512518 CAACTTCGCTTGCATGACGA 59.487 50.000 12.59 12.59 0.00 4.20
787 795 0.235665 ACAACTTCGCTTGCATGACG 59.764 50.000 3.33 6.90 0.00 4.35
788 796 3.226347 GTTACAACTTCGCTTGCATGAC 58.774 45.455 3.33 0.00 0.00 3.06
789 797 2.096466 CGTTACAACTTCGCTTGCATGA 60.096 45.455 3.33 0.00 0.00 3.07
790 798 2.233355 CGTTACAACTTCGCTTGCATG 58.767 47.619 0.00 0.00 0.00 4.06
851 860 4.065088 TCTAACCCGTACTACGCGATAAT 58.935 43.478 15.93 0.00 40.91 1.28
852 861 3.462982 TCTAACCCGTACTACGCGATAA 58.537 45.455 15.93 0.00 40.91 1.75
853 862 3.059884 CTCTAACCCGTACTACGCGATA 58.940 50.000 15.93 0.00 40.91 2.92
854 863 1.869767 CTCTAACCCGTACTACGCGAT 59.130 52.381 15.93 0.00 40.91 4.58
855 864 1.134818 TCTCTAACCCGTACTACGCGA 60.135 52.381 15.93 0.00 40.91 5.87
856 865 1.004504 GTCTCTAACCCGTACTACGCG 60.005 57.143 3.53 3.53 40.91 6.01
963 977 5.995897 TGTCTAGGGTTTAGAAAAAGCTGTC 59.004 40.000 0.00 0.00 41.73 3.51
969 983 6.013984 ACGGATCTGTCTAGGGTTTAGAAAAA 60.014 38.462 0.00 0.00 0.00 1.94
1050 1070 2.507944 GGCACCTCGCTGATGGAT 59.492 61.111 0.00 0.00 41.91 3.41
1149 1169 1.073964 CGTCGACGGAGAAGTACTGA 58.926 55.000 29.70 0.00 35.37 3.41
1665 1685 0.032615 AGAGGAGGCTCTCGAACCAT 60.033 55.000 15.23 0.00 38.71 3.55
2156 2232 4.657504 TGTAGTCCGAGAGATTACCCTAGA 59.342 45.833 0.00 0.00 36.98 2.43
2157 2233 4.970711 TGTAGTCCGAGAGATTACCCTAG 58.029 47.826 0.00 0.00 36.98 3.02
2158 2234 5.579753 ATGTAGTCCGAGAGATTACCCTA 57.420 43.478 0.00 0.00 36.98 3.53
2159 2235 3.947612 TGTAGTCCGAGAGATTACCCT 57.052 47.619 0.00 0.00 36.98 4.34
2256 2337 6.717289 ACTTCAGCACACCAATAACCTAATA 58.283 36.000 0.00 0.00 0.00 0.98
2308 2389 9.383519 TCATAAACTGGACTCTTGCTTAAATAG 57.616 33.333 0.00 0.00 0.00 1.73
2309 2390 9.905713 ATCATAAACTGGACTCTTGCTTAAATA 57.094 29.630 0.00 0.00 0.00 1.40
2310 2391 8.814038 ATCATAAACTGGACTCTTGCTTAAAT 57.186 30.769 0.00 0.00 0.00 1.40
2311 2392 9.383519 CTATCATAAACTGGACTCTTGCTTAAA 57.616 33.333 0.00 0.00 0.00 1.52
2338 2419 1.745864 ACGACGATGAGAGAGGCGT 60.746 57.895 0.00 0.00 39.99 5.68
2339 2420 1.297967 CACGACGATGAGAGAGGCG 60.298 63.158 0.00 0.00 0.00 5.52
2346 2427 5.346011 TCAAATTCTTTCTCACGACGATGAG 59.654 40.000 16.46 16.46 46.40 2.90
2373 2462 8.204903 TGACCAATAACCTAACTACAAAGGTA 57.795 34.615 0.00 0.00 45.51 3.08
2375 2464 9.847224 ATATGACCAATAACCTAACTACAAAGG 57.153 33.333 0.00 0.00 38.93 3.11
2377 2466 9.841295 GGATATGACCAATAACCTAACTACAAA 57.159 33.333 0.00 0.00 32.24 2.83
2408 2498 4.512571 GTGCAAACTCAAGGCAATCAAATT 59.487 37.500 0.00 0.00 39.57 1.82
2409 2499 4.060205 GTGCAAACTCAAGGCAATCAAAT 58.940 39.130 0.00 0.00 39.57 2.32
2856 2947 0.029035 CGTATAACTCGCGAGCTGGT 59.971 55.000 34.83 20.32 0.00 4.00
2889 2980 7.436080 TCGTTATTATAACGAGCTTAAACCCAG 59.564 37.037 28.99 3.97 46.21 4.45
2938 3029 1.197368 CTCGCTAGAGCTCGTTTCGC 61.197 60.000 8.37 6.85 37.73 4.70
3005 3096 9.199982 CAAGAACATGAAAGCAAATTCTTACAT 57.800 29.630 0.00 0.00 38.86 2.29
3022 3116 2.916111 CCGACGAAAACCAAGAACATG 58.084 47.619 0.00 0.00 0.00 3.21
3040 3134 1.641123 ATAACCCAGCGAAAACGCCG 61.641 55.000 10.85 0.93 35.12 6.46
3042 3136 0.800012 TCATAACCCAGCGAAAACGC 59.200 50.000 6.50 6.50 0.00 4.84
3043 3137 2.482721 AGTTCATAACCCAGCGAAAACG 59.517 45.455 0.00 0.00 0.00 3.60
3064 3158 8.257306 AGGTTTTGAAAAGAACAATAGAGCAAA 58.743 29.630 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.