Multiple sequence alignment - TraesCS2A01G491200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G491200 chr2A 100.000 2339 0 0 1 2339 724362510 724360172 0.000000e+00 4320
1 TraesCS2A01G491200 chr2D 90.864 1423 84 28 1 1390 590037282 590035873 0.000000e+00 1866
2 TraesCS2A01G491200 chr2D 92.216 167 13 0 2173 2339 590035029 590034863 1.080000e-58 237
3 TraesCS2A01G491200 chr2D 93.939 99 6 0 1416 1514 590035781 590035683 1.450000e-32 150
4 TraesCS2A01G491200 chr2B 90.838 764 52 12 1 761 714484452 714483704 0.000000e+00 1007
5 TraesCS2A01G491200 chr2B 90.015 651 35 6 770 1390 714468036 714467386 0.000000e+00 815
6 TraesCS2A01G491200 chr2B 100.000 40 0 0 746 785 714483687 714483648 8.960000e-10 75
7 TraesCS2A01G491200 chrUn 95.312 64 3 0 2237 2300 182471006 182470943 4.110000e-18 102
8 TraesCS2A01G491200 chr7D 95.312 64 3 0 2237 2300 307004916 307004979 4.110000e-18 102
9 TraesCS2A01G491200 chr7D 95.312 64 3 0 2237 2300 307054937 307054874 4.110000e-18 102
10 TraesCS2A01G491200 chr7D 95.312 64 3 0 2237 2300 382001366 382001303 4.110000e-18 102
11 TraesCS2A01G491200 chr4D 95.312 64 3 0 2237 2300 123377775 123377838 4.110000e-18 102
12 TraesCS2A01G491200 chr4D 95.312 64 3 0 2237 2300 123588562 123588625 4.110000e-18 102
13 TraesCS2A01G491200 chr4B 95.312 64 3 0 2237 2300 209055961 209056024 4.110000e-18 102
14 TraesCS2A01G491200 chr1A 95.312 64 3 0 2237 2300 238146274 238146211 4.110000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G491200 chr2A 724360172 724362510 2338 True 4320 4320 100.000000 1 2339 1 chr2A.!!$R1 2338
1 TraesCS2A01G491200 chr2D 590034863 590037282 2419 True 751 1866 92.339667 1 2339 3 chr2D.!!$R1 2338
2 TraesCS2A01G491200 chr2B 714467386 714468036 650 True 815 815 90.015000 770 1390 1 chr2B.!!$R1 620
3 TraesCS2A01G491200 chr2B 714483648 714484452 804 True 541 1007 95.419000 1 785 2 chr2B.!!$R2 784

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
586 591 1.407258 CAGACCGGTTTTTGCAAGGAA 59.593 47.619 9.42 1.31 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1592 1736 0.530211 TTGCATTGCAACACACAGCC 60.53 50.0 19.77 0.0 43.99 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 5.890985 TCAACCCTTAATATGACATGTTGGG 59.109 40.000 15.04 15.04 38.13 4.12
61 62 2.349755 GGCCCGTTTGTCAGGCTA 59.650 61.111 0.00 0.00 46.31 3.93
102 103 2.856222 CATGGCCCTTCTAGATGGTTC 58.144 52.381 20.23 13.25 0.00 3.62
232 237 9.696917 AATCATCACCATTTGTAAAAAGTCTTC 57.303 29.630 0.00 0.00 0.00 2.87
251 256 5.841296 GTCTTCGACATCTTTTTCAAACTCG 59.159 40.000 0.00 0.00 32.09 4.18
273 278 6.720343 TCGTTTTCATTCTCAAATTCGTGAA 58.280 32.000 0.00 0.00 0.00 3.18
586 591 1.407258 CAGACCGGTTTTTGCAAGGAA 59.593 47.619 9.42 1.31 0.00 3.36
596 601 2.307934 TTGCAAGGAACAAGCAAACC 57.692 45.000 0.00 0.00 44.66 3.27
603 608 5.183140 GCAAGGAACAAGCAAACCTAGATTA 59.817 40.000 0.00 0.00 32.06 1.75
631 638 5.845391 TCTTTTGAGAACCCGATTTGTTT 57.155 34.783 0.00 0.00 0.00 2.83
632 639 6.215495 TCTTTTGAGAACCCGATTTGTTTT 57.785 33.333 0.00 0.00 0.00 2.43
633 640 6.635755 TCTTTTGAGAACCCGATTTGTTTTT 58.364 32.000 0.00 0.00 0.00 1.94
685 694 2.817834 GCTGGCCGATGTGCGTTA 60.818 61.111 0.00 0.00 38.67 3.18
686 695 2.813179 GCTGGCCGATGTGCGTTAG 61.813 63.158 0.00 0.00 38.67 2.34
687 696 2.813179 CTGGCCGATGTGCGTTAGC 61.813 63.158 0.00 0.00 45.41 3.09
710 719 4.649977 GACTACTACTATTCGGCGCATAG 58.350 47.826 21.98 21.98 0.00 2.23
991 1055 3.597728 GCGGCGGAGGAGTAGAGG 61.598 72.222 9.78 0.00 0.00 3.69
1063 1127 0.458025 CGCAAAGTACGAGGAGGACC 60.458 60.000 0.00 0.00 32.79 4.46
1187 1251 2.173569 ACCTCACCTTCTTCTTGCAGTT 59.826 45.455 0.00 0.00 0.00 3.16
1191 1255 0.519077 CCTTCTTCTTGCAGTTCGCC 59.481 55.000 0.00 0.00 41.33 5.54
1195 1259 2.175184 CTTCTTGCAGTTCGCCGTGG 62.175 60.000 0.00 0.00 41.33 4.94
1219 1283 1.003839 TTCCTTGATGCCGCGTTCT 60.004 52.632 4.92 0.00 0.00 3.01
1220 1284 0.605319 TTCCTTGATGCCGCGTTCTT 60.605 50.000 4.92 0.00 0.00 2.52
1233 1297 2.079925 GCGTTCTTCTTCTGCCTCATT 58.920 47.619 0.00 0.00 0.00 2.57
1250 1314 0.318784 ATTACGCGGAGATTCGGCTC 60.319 55.000 12.47 0.00 40.09 4.70
1264 1328 4.103103 GCTCGTTCGCTTTGCCCC 62.103 66.667 0.00 0.00 0.00 5.80
1294 1372 1.738099 CCGTGGAGAAGACAAGCCG 60.738 63.158 0.00 0.00 0.00 5.52
1397 1485 6.968263 TGCTAGTCTTCTGTTATAGCAGAT 57.032 37.500 18.60 7.70 42.78 2.90
1459 1603 0.892755 TGATCGTTTCTGCGTACCCT 59.107 50.000 0.00 0.00 0.00 4.34
1464 1608 2.159338 TCGTTTCTGCGTACCCTGTATC 60.159 50.000 0.00 0.00 0.00 2.24
1465 1609 2.190981 GTTTCTGCGTACCCTGTATCG 58.809 52.381 0.00 0.00 0.00 2.92
1472 1616 1.470285 CGTACCCTGTATCGTGTTGGG 60.470 57.143 0.00 0.00 43.26 4.12
1505 1649 8.639428 CGTCCAAGATGAACTAATATATGTTCG 58.361 37.037 12.89 0.00 43.73 3.95
1513 1657 9.935682 ATGAACTAATATATGTTCGCAAACTTG 57.064 29.630 12.89 0.00 43.73 3.16
1514 1658 9.157104 TGAACTAATATATGTTCGCAAACTTGA 57.843 29.630 12.89 0.00 43.73 3.02
1515 1659 9.982291 GAACTAATATATGTTCGCAAACTTGAA 57.018 29.630 5.40 0.00 36.30 2.69
1553 1697 9.939047 CTCGTTTCGAGCAATATATTATGTTAC 57.061 33.333 6.24 0.00 46.75 2.50
1554 1698 9.687210 TCGTTTCGAGCAATATATTATGTTACT 57.313 29.630 0.00 0.00 0.00 2.24
1590 1734 9.809096 TCATCATCTTATTTGTTCAGACTAGAC 57.191 33.333 0.00 0.00 0.00 2.59
1591 1735 9.814899 CATCATCTTATTTGTTCAGACTAGACT 57.185 33.333 0.00 0.00 0.00 3.24
1592 1736 9.814899 ATCATCTTATTTGTTCAGACTAGACTG 57.185 33.333 15.04 15.04 39.02 3.51
1599 1743 2.294449 TCAGACTAGACTGGCTGTGT 57.706 50.000 19.81 0.00 38.31 3.72
1638 1782 2.263077 CAGAATAGCGATCATACGGGC 58.737 52.381 0.00 0.00 0.00 6.13
1641 1785 2.080286 ATAGCGATCATACGGGCAAC 57.920 50.000 0.00 0.00 0.00 4.17
1649 1793 1.478916 TCATACGGGCAACATTCTCGA 59.521 47.619 0.00 0.00 39.74 4.04
1671 1815 7.535139 TCGACATTTGGTTTTCATCTTATTCC 58.465 34.615 0.00 0.00 0.00 3.01
1672 1816 6.468956 CGACATTTGGTTTTCATCTTATTCCG 59.531 38.462 0.00 0.00 0.00 4.30
1697 1841 3.678056 TTCGATGAGTTGGTTGCTACT 57.322 42.857 0.00 0.00 0.00 2.57
1709 1853 0.320946 TTGCTACTGTACCAACGGCC 60.321 55.000 0.00 0.00 35.17 6.13
1716 1860 4.476752 TACCAACGGCCCGGATGC 62.477 66.667 8.57 0.00 0.00 3.91
1764 1963 9.650371 GAAAAATAGTTTGGTGAATGAAAAAGC 57.350 29.630 0.00 0.00 0.00 3.51
1767 1966 5.343307 AGTTTGGTGAATGAAAAAGCAGT 57.657 34.783 0.00 0.00 0.00 4.40
1771 1970 5.125100 TGGTGAATGAAAAAGCAGTCATC 57.875 39.130 0.00 0.00 43.57 2.92
1775 1974 7.039853 TGGTGAATGAAAAAGCAGTCATCAATA 60.040 33.333 5.43 0.00 46.89 1.90
1829 2031 8.730427 CGGATAGTAAAAATGTTCGCAAAATAC 58.270 33.333 0.00 0.00 0.00 1.89
1969 2182 8.611654 ATGGCCAATATTTTCTCAAATAATGC 57.388 30.769 10.96 0.00 38.18 3.56
1983 2196 8.456471 TCTCAAATAATGCTGAACATTCTCTTG 58.544 33.333 0.00 0.00 46.28 3.02
1995 2208 7.420002 TGAACATTCTCTTGAAACACATTGAG 58.580 34.615 0.00 0.00 35.63 3.02
2155 2375 7.887996 TGCACATTGAATATTTTTGAAGTCC 57.112 32.000 0.00 0.00 0.00 3.85
2156 2376 6.873076 TGCACATTGAATATTTTTGAAGTCCC 59.127 34.615 0.00 0.00 0.00 4.46
2157 2377 6.313658 GCACATTGAATATTTTTGAAGTCCCC 59.686 38.462 0.00 0.00 0.00 4.81
2158 2378 6.818142 CACATTGAATATTTTTGAAGTCCCCC 59.182 38.462 0.00 0.00 0.00 5.40
2250 2470 3.593442 TGAAGTGGAGGGAAAATGTGT 57.407 42.857 0.00 0.00 0.00 3.72
2271 2491 6.319405 TGTGTGTGAATATGAATGGAGATTGG 59.681 38.462 0.00 0.00 0.00 3.16
2272 2492 5.300034 TGTGTGAATATGAATGGAGATTGGC 59.700 40.000 0.00 0.00 0.00 4.52
2329 2549 9.994432 CACAGAGATTTTGATAAATACCTGAAC 57.006 33.333 13.71 0.00 37.07 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 7.826690 ACATGTCATATTAAGGGTTGAAACAC 58.173 34.615 0.00 0.00 0.00 3.32
83 84 1.777272 GGAACCATCTAGAAGGGCCAT 59.223 52.381 17.95 0.00 0.00 4.40
102 103 7.568199 AAACAAATCCTAGTTAATCGATGGG 57.432 36.000 0.00 0.00 0.00 4.00
108 109 9.674068 AGGAGAGAAAACAAATCCTAGTTAATC 57.326 33.333 0.00 0.00 38.62 1.75
232 237 6.467682 TGAAAACGAGTTTGAAAAAGATGTCG 59.532 34.615 1.65 0.00 32.36 4.35
251 256 7.678194 TGTTCACGAATTTGAGAATGAAAAC 57.322 32.000 8.56 0.00 0.00 2.43
323 328 8.935844 CACTTTGCAAGTATTAAGATGTCTGTA 58.064 33.333 0.00 0.00 40.46 2.74
326 331 7.986085 ACACTTTGCAAGTATTAAGATGTCT 57.014 32.000 0.00 0.00 40.46 3.41
339 344 4.911610 CGAGGATACAAAACACTTTGCAAG 59.088 41.667 0.00 0.00 44.96 4.01
560 565 1.533129 GCAAAAACCGGTCTGTGTGTC 60.533 52.381 8.04 0.00 0.00 3.67
612 617 6.975772 CAGTAAAAACAAATCGGGTTCTCAAA 59.024 34.615 0.00 0.00 0.00 2.69
613 618 6.095720 ACAGTAAAAACAAATCGGGTTCTCAA 59.904 34.615 0.00 0.00 0.00 3.02
614 619 5.591067 ACAGTAAAAACAAATCGGGTTCTCA 59.409 36.000 0.00 0.00 0.00 3.27
624 631 9.185680 AGAACCTCTGTTACAGTAAAAACAAAT 57.814 29.630 12.41 0.00 35.32 2.32
628 635 6.017357 CCCAGAACCTCTGTTACAGTAAAAAC 60.017 42.308 12.41 1.99 42.80 2.43
631 638 4.903049 TCCCAGAACCTCTGTTACAGTAAA 59.097 41.667 12.41 0.00 42.80 2.01
632 639 4.485875 TCCCAGAACCTCTGTTACAGTAA 58.514 43.478 12.41 0.00 42.80 2.24
633 640 4.122337 TCCCAGAACCTCTGTTACAGTA 57.878 45.455 12.41 0.00 42.80 2.74
685 694 1.530293 CGCCGAATAGTAGTAGTCGCT 59.470 52.381 19.31 0.00 43.69 4.93
686 695 1.947836 CGCCGAATAGTAGTAGTCGC 58.052 55.000 19.31 14.13 43.69 5.19
687 696 1.262417 TGCGCCGAATAGTAGTAGTCG 59.738 52.381 18.11 18.11 44.44 4.18
688 697 3.555917 ATGCGCCGAATAGTAGTAGTC 57.444 47.619 4.18 0.00 0.00 2.59
689 698 4.070716 ACTATGCGCCGAATAGTAGTAGT 58.929 43.478 16.11 0.00 38.72 2.73
690 699 4.681835 ACTATGCGCCGAATAGTAGTAG 57.318 45.455 16.11 0.00 38.72 2.57
691 700 5.791367 CTACTATGCGCCGAATAGTAGTA 57.209 43.478 31.34 13.17 46.69 1.82
694 703 3.678289 TCCTACTATGCGCCGAATAGTA 58.322 45.455 20.88 20.88 40.49 1.82
710 719 2.979678 TCCTATTTGGGGATGCTCCTAC 59.020 50.000 2.79 0.00 36.57 3.18
787 828 2.666098 TAGGCGGCCCACTTCCTTC 61.666 63.158 17.02 0.00 0.00 3.46
858 904 0.514691 CTCGTGCTTCTGTTTGGAGC 59.485 55.000 0.00 0.00 0.00 4.70
981 1038 1.988539 TGTCCTCTCCCTCTACTCCT 58.011 55.000 0.00 0.00 0.00 3.69
986 1043 0.468214 CGCCATGTCCTCTCCCTCTA 60.468 60.000 0.00 0.00 0.00 2.43
991 1055 4.554036 GGCCGCCATGTCCTCTCC 62.554 72.222 3.91 0.00 0.00 3.71
1047 1111 0.896940 TGCGGTCCTCCTCGTACTTT 60.897 55.000 0.00 0.00 0.00 2.66
1063 1127 1.264288 GGACACCTTGAAGTCTTTGCG 59.736 52.381 0.00 0.00 35.18 4.85
1169 1233 2.483876 CGAACTGCAAGAAGAAGGTGA 58.516 47.619 0.00 0.00 37.43 4.02
1187 1251 1.469335 AAGGAAGAAGACCACGGCGA 61.469 55.000 16.62 0.00 0.00 5.54
1191 1255 1.734465 GCATCAAGGAAGAAGACCACG 59.266 52.381 0.00 0.00 0.00 4.94
1195 1259 0.729690 GCGGCATCAAGGAAGAAGAC 59.270 55.000 0.00 0.00 0.00 3.01
1219 1283 1.640428 CGCGTAATGAGGCAGAAGAA 58.360 50.000 0.00 0.00 36.19 2.52
1220 1284 0.179111 CCGCGTAATGAGGCAGAAGA 60.179 55.000 4.92 0.00 36.19 2.87
1233 1297 2.719979 GAGCCGAATCTCCGCGTA 59.280 61.111 4.92 0.00 0.00 4.42
1250 1314 2.668212 TCTGGGGCAAAGCGAACG 60.668 61.111 0.00 0.00 0.00 3.95
1272 1350 2.111999 CTTGTCTTCTCCACGGGGCA 62.112 60.000 0.00 0.00 0.00 5.36
1294 1372 1.281899 CGAGCTGGTTTTCGAGATCC 58.718 55.000 0.00 0.00 37.69 3.36
1392 1480 2.143122 TCAAACACAAGACCGATCTGC 58.857 47.619 0.00 0.00 34.48 4.26
1397 1485 2.158957 AGCTTCTCAAACACAAGACCGA 60.159 45.455 0.00 0.00 0.00 4.69
1459 1603 1.592743 CCGGACCCAACACGATACA 59.407 57.895 0.00 0.00 0.00 2.29
1472 1616 2.511600 CATCTTGGACGCCCGGAC 60.512 66.667 0.73 0.00 34.29 4.79
1505 1649 6.963805 CGAGGAGATAATCTTTTCAAGTTTGC 59.036 38.462 0.00 0.00 0.00 3.68
1528 1672 9.687210 AGTAACATAATATATTGCTCGAAACGA 57.313 29.630 8.28 0.00 0.00 3.85
1562 1706 9.591792 CTAGTCTGAACAAATAAGATGATGACA 57.408 33.333 0.00 0.00 0.00 3.58
1563 1707 9.809096 TCTAGTCTGAACAAATAAGATGATGAC 57.191 33.333 0.00 0.00 0.00 3.06
1564 1708 9.809096 GTCTAGTCTGAACAAATAAGATGATGA 57.191 33.333 0.00 0.00 0.00 2.92
1565 1709 9.814899 AGTCTAGTCTGAACAAATAAGATGATG 57.185 33.333 0.00 0.00 0.00 3.07
1566 1710 9.814899 CAGTCTAGTCTGAACAAATAAGATGAT 57.185 33.333 11.07 0.00 37.61 2.45
1567 1711 8.253810 CCAGTCTAGTCTGAACAAATAAGATGA 58.746 37.037 17.25 0.00 37.61 2.92
1568 1712 7.010923 GCCAGTCTAGTCTGAACAAATAAGATG 59.989 40.741 17.25 0.00 37.61 2.90
1569 1713 7.044798 GCCAGTCTAGTCTGAACAAATAAGAT 58.955 38.462 17.25 0.00 37.61 2.40
1570 1714 6.211584 AGCCAGTCTAGTCTGAACAAATAAGA 59.788 38.462 17.25 0.00 37.61 2.10
1571 1715 6.312426 CAGCCAGTCTAGTCTGAACAAATAAG 59.688 42.308 17.25 0.24 37.61 1.73
1572 1716 6.166279 CAGCCAGTCTAGTCTGAACAAATAA 58.834 40.000 17.25 0.00 37.61 1.40
1573 1717 5.246203 ACAGCCAGTCTAGTCTGAACAAATA 59.754 40.000 17.25 0.00 37.61 1.40
1574 1718 4.040952 ACAGCCAGTCTAGTCTGAACAAAT 59.959 41.667 17.25 0.00 37.61 2.32
1575 1719 3.388024 ACAGCCAGTCTAGTCTGAACAAA 59.612 43.478 17.25 0.00 37.61 2.83
1581 1725 1.615883 ACACACAGCCAGTCTAGTCTG 59.384 52.381 9.73 9.73 35.45 3.51
1590 1734 0.942410 GCATTGCAACACACAGCCAG 60.942 55.000 0.00 0.00 0.00 4.85
1591 1735 1.067749 GCATTGCAACACACAGCCA 59.932 52.632 0.00 0.00 0.00 4.75
1592 1736 0.530211 TTGCATTGCAACACACAGCC 60.530 50.000 19.77 0.00 43.99 4.85
1613 1757 3.677148 CGTATGATCGCTATTCTGCCCAT 60.677 47.826 0.00 0.00 0.00 4.00
1638 1782 5.976534 TGAAAACCAAATGTCGAGAATGTTG 59.023 36.000 0.00 0.00 0.00 3.33
1641 1785 6.615088 AGATGAAAACCAAATGTCGAGAATG 58.385 36.000 0.00 0.00 0.00 2.67
1649 1793 7.227049 ACGGAATAAGATGAAAACCAAATGT 57.773 32.000 0.00 0.00 0.00 2.71
1691 1835 1.294138 GGCCGTTGGTACAGTAGCA 59.706 57.895 8.45 8.45 42.39 3.49
1697 1841 3.004354 ATCCGGGCCGTTGGTACA 61.004 61.111 26.32 0.00 0.00 2.90
1709 1853 2.109799 CTAGGCAGGTGCATCCGG 59.890 66.667 4.01 0.00 44.36 5.14
1716 1860 9.444600 TTTTCTTATACTTAAACTAGGCAGGTG 57.555 33.333 0.00 0.00 0.00 4.00
1750 1949 5.125100 TGATGACTGCTTTTTCATTCACC 57.875 39.130 0.00 0.00 32.43 4.02
1968 2181 5.173774 TGTGTTTCAAGAGAATGTTCAGC 57.826 39.130 0.00 0.00 32.89 4.26
1969 2182 7.420002 TCAATGTGTTTCAAGAGAATGTTCAG 58.580 34.615 0.00 0.00 32.89 3.02
1978 2191 6.252869 GCATTATGCTCAATGTGTTTCAAGAG 59.747 38.462 10.27 0.00 40.96 2.85
1983 2196 6.020121 GTCATGCATTATGCTCAATGTGTTTC 60.020 38.462 18.44 2.09 45.31 2.78
2132 2352 6.313658 GGGGACTTCAAAAATATTCAATGTGC 59.686 38.462 0.00 0.00 0.00 4.57
2133 2353 6.818142 GGGGGACTTCAAAAATATTCAATGTG 59.182 38.462 0.00 0.00 0.00 3.21
2196 2416 9.270576 CTTCACTTCATCGAATTAAAATCACTG 57.729 33.333 0.00 0.00 0.00 3.66
2197 2417 9.219603 TCTTCACTTCATCGAATTAAAATCACT 57.780 29.630 0.00 0.00 0.00 3.41
2241 2461 8.461222 TCTCCATTCATATTCACACACATTTTC 58.539 33.333 0.00 0.00 0.00 2.29
2250 2470 4.516321 CGCCAATCTCCATTCATATTCACA 59.484 41.667 0.00 0.00 0.00 3.58
2289 2509 8.877779 CAAAATCTCTGTGTATAACCTCTGAAG 58.122 37.037 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.