>input_sequence_83312
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-----------------------ATGGCGGCCAACGGCGAGAGACAGCGGGAGGAGGCCAGGGAGCTCGCAAAGTACGAG
GAGGACCGCAAAGACTTCAAGGTGTCCATGTACCTGATCGCCATGCTCATCGCGGTCGCCTTGGCGTTCCTGGTCACCAG
CTTTCTCGTCCCGCGCACGCCCGGGTGGTACCTCACCTTCTTCTTGCAGTTCGCCGTGGTCTTCTTCCTTGATGCCGCGT
TCTTCTTCTGCCTCATTACGCGGAGATTCGGCTCGTTCGCTTTGCCCCAG--------------AGGCCTGCCCCGTGGA
GAAGACAAGCCGGATCTCGAAAACCAGCTCGGTGCGGTGGAGGCGACGGGCGCTGA------------------------
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>chr2A_1_TraesCS2A01G491200
TGACCAAGTGTTGAGCGTGTTTCAACCCTTAATATGACATGTTGGGCCCGTTTGTCAGGCTAACGTGGTAAAAAAATGAC
CGCATGGCCCTTCTAGATGGTTCCCATCGATTAACTAGGATTTGTTTTCTCTCCTTTTTTGCTGGTGTTTCAGTCC---T
TTTTTAAAAATATTTTTCTTTTCTTTTCCTTTTCGTTTTATATATT-AAAAATCATCACCATTTGTAAAAAGTCTTCGAC
ATCTTTTTCAAACTCGTTTTCATTCTCAAATTCGTGAACAATTTTTTAATTCATAGTTTTTTCAAATTTGTGAATATTTT
TAAAAATTACAGACATCTTAATACTTGCAAAGTGTTTTGTATCCTCGGGCGCCTTTTCAAATTCTTGAACTTTGTAAAAA
AATCAATTCGTGAACATATTTTGAATTTGGAAATATTGTATAAATTTGCAAGAATTTTCCAAATTTGTGAACATTTTGAA
AAAATTGAGATTTTGAAAATTCGTGAAAATTTCTTTAAAATCTGAAGAAAAAACTTTTAAAACCGGTGGTGGTTTTTTAA
ACAGGACACACAGACCGGTTTTTGCAAGGAACAAGCAAACCTAGATTATTTTTTCTTTTGAGAACCCG--ATTTGTTTTT
ACTGTAACAGAGGTTCTGGGAACGAACGAGCTGGGCTGGCC--GATGTGCGTTAGCGACTACTACTATTCGGCGCATAGT
AGGAGCATCCCCAAATAGGAAACCGAACGTCCG--------------------------------AACCGACTGTGCACC
TGCCGTAACAAACCCTGGCGAAGCGGCGAAGGAAGTGGGCCGCCTACAGAGGGAAAGGGGAGGTGCGCGCGG-----AAC
CGGATTCGGCTCGTCCGATACCAGC----TCCAAACAGAAGCACGAGGCCTATAAAAGACGCGCGAGAGGCCCTGCCGTA
AGCCCTGTGTGGTTGTGTCTACAAGGT----TCAAGCGGCGCTTATCTATCT---TGTAGAAGCGGCGTGGCGGCGGAGG
AGT-------AGAGGGAGAGGACATGGCGGCCAACGGCGAGAGACAGCGGGAGGAGGCCAGGGAGCTCGCAAAGTACGAG
GAGGACCGCAAAGACTTCAAGGTGTCCATGTACCTGATCGCCATGCTCATCGCGGTCGCCTTGGCGTTCCTGGTCACCAG
CTTTCTCGTCCCGCGCACGCCCGGGTGGTACCTCACCTTCTTCTTGCAGTTCGCCGTGGTCTTCTTCCTTGATGCCGCGT
TCTTCTTCTGCCTCATTACGCGGAGATTCGGCTCGTTCGCTTTGCCCCAG--------------AGGCCTGCCCCGTGGA
GAAGACAAGCCGGATCTCGAAAACCAGCTCGGTGCGGTGGAGGCGACGGGCGCTGATCGTTTCTGCCCAGTTTAAGTCCG
GCTTATATTGTTGCTAGTCTTCTGTTA----------TAGCAGATCGGTCTTGTGTTTGAGA------------------
--------------------------------------AGCTCGGTGGACGAGACACCGCCGCTGATCGTTTCTGCGTAC
CCTGTATCGTGTTGGGTCCGGGCGTCCAAGATGAACTAATATATGTTCGCAAACTTGAAAAGATTATCTCCTCGTTTCGA
GCAATATATTATGTTACTAAATATATGTCATCATCTTATTTGTTCAGACTAGACTGGCTGTGTGTTGCAATGCAACATGG
GCAGAATAGCGATCATACGGGCAACATTCTCGACATTTGGTTTTCATCTTATTCCGTTTTTTCGATGAGTTGGTTGCTAC
TGTACCAACGGCCCGGATGCACCTGCCTA---------------------------------------------------
----GTTTAAGTATAAGAAAAATAGTTTGGTGAATGAAAAAGCAGTCATCAATATTAAAAATGTTT---ACATTAAAATG
TTTACGGATAGTAAAAATGTTCGCAAAATACAGATTTTTTGTTTTAAAAAA-------TAGATGTAATTTTTTTGT---A
AGTACTTGATATCTTTTAAATATTTTATTTCGTACTTGAATATTTTTTTGATACACGCTGAATTTTTTAAAATATATGGC
-CAATATTTTCTCAAATAATGCTGAACATTCTCTTGAAACACATTGAGCATAATGCATGACAATGATTTTTTCAAATAAC
TTCAAACAATTTTATACATGATGATTATTTTAATATGATAAACATTTTTAGTTACAATTTTTTTAAGTATAGATG-----
--TTTTCTTAGTAACATTGATAATTTTAAATGCACATTGAATATTTTTGAAGTCCCCCCCCCACAAAAAAAGAATATTTT
TGAAGTACTCAATTTCAGTGATTTTAATTCGATGAAGTGAAGACACTTATGAAGTGGAGGGAAAATGTGTGTGAATATGA
ATGGAGATTGGCGAGAATATTTCTCTACCTTCAGAGGTTATACACAGAGATTTTGATAAATACCTGAACATTTTGGAA
>chr2D_1
TGACCAAGTGTTGAGCATGTTTCAACCCTTAATATGACATGTTGGACCCGTTTGTCAGGCTGACATGGTAAAAAAATGAC
CGCGTAGCCCTTCTAGATGGTTGCCATCTATTAACTA-GATTTGTTTTCTCTCCTTTTTTGCTGGTGTTTCAGTAGTTTT
TTTTTTAT-ATTTTTTCCTTTCCTTTTCTTTTTCGTTTGTTATATTAAAAAATCATCACCGTTTGTAAAAAGTCTTTGAC
ATCTTTTTCAAACTCATTTTCATTCTCAAATTCGTGA-CAATTTTTTAATTCATTTTTTTTTCAAATTTGTGAATATTTT
TAAAAATGACGGACATTTTAATATTTGCAAAGTGTTTTGTATCCTCGGGCGCCTTTTCAAATTCTTGAACTTTGTAAAAA
AT--AATTGATGAACATTTTTTGAATTTGAAAATACTTTATTAATTTGCAAGGATTTTCCAAATTTTTGAACATTTT-AA
AAAATTGAGATTTTTAAAATTCGTGAAGATTTCTTTAACATCCGAAGAAAAAAAAATTAAAGCCGGTGGTGGTTTTTAAA
ACAGAACACACAGACCGGTTTTTGCAAGGAGCAAGCAAACATAGTTTTTTTTTTTT---GAGAAACCGATTTTTTTT---
ACTGCAACAGAGGTTCTGGGAACGAACGAGCTGGGCTGGCCTAGATCTGCGTTGTA----ACGACTATTCGGCGCATAAT
AGGAGCATCCCCAAATAGGAAACCGAACATCCG--------------------------------AACCGACTGTGCACC
GGCCGTAACAAACCCTGGCGAAGCGACAAAGGAAGTGGGCCGCCCACAGAGGGAAAGGGGAGGTGCGCGCGG-----AAC
CGGATTCGGCTCGTCCGATGCCATC----TCCAAACAGAAGCACGAGGCCTATAAAAGACGCGCGAGAGGCCCTGCCGTA
AGCCCTGTGTGGTTGTGTCTACAAGGTAGGTTGAAGCGGCGCTTATCTACTCCTGTGTAGAAGCGGCGTGGCGGCGGCGG
AGGAGTAGAGAGAGAGAGAGGACATGGCGGCCAACGGCGAGAGTCAGCGGGAGGAGGCCAGGGAGCTCGCCAAGTACGAG
GAGGACTGCAAAGACTTCAAGGTGTCCATGTACCTGATCGTCCTGCTCATCGCGGTCGCCTTGGCGTTCCTGGTCACCAG
CTTCCTCGTCCCGCGCACGCCCGGGTGGTACCGCACCTACTTCCAGCAGTGCGCGGTGCTCTTCTTCCTTGATGCCGCGT
TCGGCTTCTGCCTCATCACGCGGAGCTTCGGCTGGTTCGCTTTCCCCAAGAGGCCGGATGTCGAAGCCCAGCCCCGCGGA
GAAGACAAGCCAGATCTCGAAAACCAGCTCGGTGCGGTGGAGGCGACGGGCGCTGATCGTTTCTGCCCAGTTTAAGTCCG
GCTTATATTGTTGCTAGTCTTCTGTTAGGAGTATAATTAACAGAACGGTCTTGTGTTTGAGAGGTCAACAAGTGATGTGT
CTTCTAGTCTGCAATCGTGTCTCCTGATCTCGAAGCCCAGCTCGGTGGACGAGACACCGGCGCTGATCGTTTCTGCGTAC
CCCGTATTATGTTGGATCCGGGCGTCCAAGATGAACTAATATATGTTCACAAACTT-----------------GTTTCGA
GTAATATATTAT---------------------------TTGTTTAGACTAGATCAGCTGTGCGTTGCAATGCAACCTGG
GCAGAATAGCGATCATACGGGAAATATTCTCGCCATTTGGTTTTCATCTTATTCATTTTTTTCGATGAGTTGGTCGCTAC
AGTACCAACGGCTCGGATGGACCTCAGAAAATCCCTTGCCCAGTTTCGATACTTTTTCACAACTTTATAAAAAATGTTAA
ATTGGTTTAAGTATAAGAAAAATAGTTTTGTGAATGAAAAAT-AGCCATGAATTTTAAAAATGCTTGCAACATTAAAATG
TTTACGGACAGTAAA-ATGTTTGCAAAATATATTCTTTTTTTTGTTTTGTTTTCAGATTAGATGTAACAAAATCATGTCA
AATACATGGTATGTTTGAAATATTTTATTTCGTACTTTAACA-TTTTTTGATACACGTTGAATATTTAAAAATATATGGG
GCAATATTTTCTCAAATAATATTGAACATTTTCTTCAAACACATTGAACATAATGCATGACAATCATTTTCTCAAATAAT
TTCAAACAATTTTATATGTGACGATTATTTTGATATGATAAAC-TTTTTACTTACAATTAGTTTTTGAAAAAATAAGTGG
CATTTTCTTAGTAACATGGAGATTTTTAAATAGACATT---------------------------------GAATATTTT
TGAAGTACTCGATTTTGGTGATTTTAATTTGATGAAGTGAAGACACTTATGAAGTGGAGGAAAAATGTGCGTGAATATGA
ATGGAGATTGATGAGAATATTTCTCTACTTTCAGAGGTTATACACAAAGATTTTGATAAATACTTGAATATTTTCGAA
>chr2B_1
TGACCAAGTGTTGAGCATGTTTCAACCCTTAATATGACATGTTGGACCCATTTGTCAGGCTGACGTGGTAAAAAAATGAC
CGCGTAGCCCTTCTAGATGGTTTCCATCTATTAACTA-GATTTGTTTTCTCTCCTTTTTTGCTGGTGTTTCAGTCC---T
TTTTTTAT-ATATTTTCCTTTTATTTTATTTTTTGTTTGTTATATTAAAAAATCATCACCGTTTGTAAAAAGTCTTTGAC
ATCTTTTTCAAACTCATTTTCATTCTCAAATTCGTGA-CAATTTTTTAATTCATAAA--TTTGAAATTTATGAATATTTT
TAAAAATGACGGACATTTTAATATTTGCAAAGTGTTTTGTATCCTCGGGCGCCTTTTCAAATTCTTGAACTTTGTAAAAA
AATCAATTCGTGAACATTTTTTGAATTTGGAAATATTTTATAAATTTGCAAGGATATTCCAAATTTGTGAACATTTTGAA
AAAAATGAGATTTTTAAAATTCGTGAAGATTTCTTTAAAATCTGAAGAAAGAATTTTTAAAACCGATGGTGGTTTTTTAA
ACAGAACACACATACCAGATTTTGCAAGGAGCAAGCAAACATAGATTTATTTTTCT---GAGAACCCG--TTTTTTT---
ACTGTAACAGAGGTTCTGGGAACGAACGAACTTGGCTGGCCTAGATGTGCGTTGTA----ACGACTATTCGGCGCATAAT
AGGAGCATCCCCAAATAGGAAACCGAACGTCTGAACCGACTGTGCACCTTTTTTTTTTGAGAAAAAACCGACTGTGCACC
TGCCGTAACAAACCCTGGCGAAGCG-------------------------------------------------------
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>chr2B_770
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---------AAAACCTGGCGAAGCGACAAAGGAAGTGGGCCGCCTACAGAGGGAAAGGGGAGGTGCGCGCGGCTCGCAAT
CGGATTCGGCTCGTCCGATACCAACTCCATCCAAACAGAAGCGCGAGGCCTATAAAAGACGGGCGAGAGGCCCTGCCGTA
AGCCCTATGTGGTTGTGTCTACAAGGA----TCAAGCGGCGTTTATCTATCT---TGTAGAGGCGGCGTGGCGGCGGCGG
AGGAGTAGAGAGAGAGAGAGGACATGGCGGCCGACGGCGAGAGACAGCGGGAGGAGGCTAGGGAGCTCGCCAAGTACGAG
GAGGACTGCAAAGACTTCAAGGTGTCCACGTACCTGATCGCCATGCTCATCGCGGTCTCCTTGGCGTTCCTGGTCACCAG
CTTCCTCGTCCCGCGCACGCCCCAGTGGTACCGCACCTACTTCTTGCAGTGCGCGGTGCTGTTTTTCCTTGATGCCGCGT
TCGGCTTCTGCCTCATCACGCGGAGATTCGGCTGGTTCGCTTTGCCCAAGAGGCCTGATGTCGAAGGCCAGCCCCGTGGA
GAAGACAAGCCAGATCTCGAAATCCAGCTCGGTGCGGTGGAGGCGACGGGCGCTGATCGTTTCTGCCCAGTTTAAGCCCG
GCTTATATTGTTGCTAGTCTTCTGTTA-----------------------------------------------------
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>SNPs
----------------S----------------------------S---------------S------------------
---S-S----------------S-----S--------S------------------------------------------
-----S-SS-------S-----------S---------SS--------------------S---------------S---
---------------S---------------------S-----------------S------------------------
-------S--S-----S------S--------------------------------------------------------
-----------------S-------------------S--------------S---------------------------
--------------S------------S-------------------------S--------------------------
----S-------------------------S---------S------S--------SSS-----------S---S--SSS
-----------------------------------------------------SSSSSSS--S---------------S-
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-------------------------S-S----------------------------------------------------
-----------------------S--------------------------------------------------------
-----------------------------------------------------------------------------S--
--S-----------S-------------------------------------------------------S---------
------S-------------------------------------------------------------------------
---S----------------------------S-----S-----------S---S---S---------------------
--SS------------S----------------S-------------S---------------------S----------
-----------S--------------------------------------------------------------------
---------------------------------------S----S-----------------------------------
-----------------------------------------------------------S--------------------
--S----SS------S--------------------------------S-------SSSSSSSSSSSSSSSSS-------
-S----------SSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--------SSS------S-------------S---
---------------------S--S-------S---------------------SS------------------S-----
S-----------S------S----SSSS----------------------------------------------------
----------------------------S------------SS--S---S---S---------S----------------
--------S------S-----S--------S-SSS-----S--S-SSSSSS----------------SSSSS-SS-----
-S---S--S---S---S--------------------S--S-S--------------S-----S---S-----------S
--------------------SS--------S----S-----------S----------------S-----S--------S
----------------SS---S---------S-----------S------S--------SS---SS-S-S-S--S-----
-----------------S--S-S--------SS-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
----------S----SS------------S------------------------------S--------S----------
----------SS----------------S-----------------S----------------S----S-----S---
>forward_591
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----------CAGACCGGTTTTTGCAAGGAA-------------------------------------------------
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>reverse_1736
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-------------------------------------------------------GGCTGTGTGTTGCAATGCAA-----
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