Multiple sequence alignment - TraesCS2A01G482800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G482800 chr2A 100.000 2663 0 0 1 2663 718974865 718977527 0.000000e+00 4918.0
1 TraesCS2A01G482800 chr2A 91.320 841 61 11 838 1668 718965829 718964991 0.000000e+00 1138.0
2 TraesCS2A01G482800 chr2A 91.440 257 22 0 490 746 763940783 763940527 1.170000e-93 353.0
3 TraesCS2A01G482800 chr2D 91.474 1208 48 24 748 1907 584867020 584868220 0.000000e+00 1609.0
4 TraesCS2A01G482800 chr2D 90.023 882 54 10 837 1684 584858763 584857882 0.000000e+00 1110.0
5 TraesCS2A01G482800 chr2D 93.775 498 28 2 2167 2663 12750553 12750058 0.000000e+00 745.0
6 TraesCS2A01G482800 chr2D 92.913 508 33 2 2157 2663 333506814 333507319 0.000000e+00 736.0
7 TraesCS2A01G482800 chr2D 92.913 508 32 3 2157 2663 643255842 643256346 0.000000e+00 736.0
8 TraesCS2A01G482800 chr2D 88.957 489 51 3 5 492 584866535 584867021 3.790000e-168 601.0
9 TraesCS2A01G482800 chr2D 90.625 256 24 0 491 746 332510414 332510159 9.130000e-90 340.0
10 TraesCS2A01G482800 chr2D 84.772 197 22 7 1454 1647 568229377 568229568 9.730000e-45 191.0
11 TraesCS2A01G482800 chr2D 88.333 120 8 4 2049 2163 387199858 387199740 3.570000e-29 139.0
12 TraesCS2A01G482800 chr2B 92.114 913 50 16 812 1716 705357247 705358145 0.000000e+00 1267.0
13 TraesCS2A01G482800 chr2B 93.655 725 40 4 965 1684 705348890 705348167 0.000000e+00 1079.0
14 TraesCS2A01G482800 chr2B 84.149 511 57 8 1 492 705356693 705357198 8.630000e-130 473.0
15 TraesCS2A01G482800 chr2B 90.980 255 23 0 492 746 219575740 219575994 7.060000e-91 344.0
16 TraesCS2A01G482800 chr2B 86.047 129 7 3 1748 1876 705359093 705359210 7.740000e-26 128.0
17 TraesCS2A01G482800 chr2B 96.154 52 2 0 1846 1897 705347910 705347859 4.720000e-13 86.1
18 TraesCS2A01G482800 chr3D 89.270 671 70 2 997 1666 41746645 41745976 0.000000e+00 839.0
19 TraesCS2A01G482800 chr3D 93.504 508 30 2 2157 2663 89924064 89924569 0.000000e+00 752.0
20 TraesCS2A01G482800 chr3D 92.678 519 34 3 2147 2663 581002594 581003110 0.000000e+00 745.0
21 TraesCS2A01G482800 chr3D 92.913 508 33 2 2157 2663 476512902 476513407 0.000000e+00 736.0
22 TraesCS2A01G482800 chr3D 90.625 256 23 1 491 746 459389850 459389596 3.280000e-89 339.0
23 TraesCS2A01G482800 chr3D 94.286 105 6 0 2061 2165 69917147 69917043 7.630000e-36 161.0
24 TraesCS2A01G482800 chr3A 88.889 675 72 3 993 1666 53257339 53256667 0.000000e+00 828.0
25 TraesCS2A01G482800 chr3A 90.310 258 23 2 490 746 703772979 703773235 1.180000e-88 337.0
26 TraesCS2A01G482800 chr3B 88.376 671 76 2 997 1666 65269451 65268782 0.000000e+00 806.0
27 TraesCS2A01G482800 chr3B 95.146 103 5 0 2063 2165 655019723 655019621 2.120000e-36 163.0
28 TraesCS2A01G482800 chr3B 87.156 109 10 2 1905 2013 167774183 167774079 1.290000e-23 121.0
29 TraesCS2A01G482800 chr7A 93.517 509 29 4 2157 2663 717913847 717914353 0.000000e+00 754.0
30 TraesCS2A01G482800 chr1D 93.110 508 33 2 2157 2663 433945390 433945896 0.000000e+00 743.0
31 TraesCS2A01G482800 chr1D 90.385 260 23 2 488 746 349468691 349468433 9.130000e-90 340.0
32 TraesCS2A01G482800 chr1D 91.453 117 10 0 2049 2165 485369488 485369604 7.630000e-36 161.0
33 TraesCS2A01G482800 chr1D 88.793 116 10 2 2048 2163 262110086 262110198 3.570000e-29 139.0
34 TraesCS2A01G482800 chr1D 89.815 108 7 4 2059 2163 66399701 66399595 4.620000e-28 135.0
35 TraesCS2A01G482800 chr1A 93.110 508 32 2 2157 2663 425687409 425686904 0.000000e+00 741.0
36 TraesCS2A01G482800 chrUn 88.455 563 49 7 1135 1683 49875911 49875351 0.000000e+00 665.0
37 TraesCS2A01G482800 chrUn 90.909 110 9 1 2057 2165 79965616 79965507 2.140000e-31 147.0
38 TraesCS2A01G482800 chr5A 91.120 259 22 1 489 746 509981840 509981582 1.520000e-92 350.0
39 TraesCS2A01G482800 chr6D 89.513 267 25 3 481 746 438834902 438835166 4.250000e-88 335.0
40 TraesCS2A01G482800 chr7B 89.961 259 25 1 489 746 579784610 579784352 1.530000e-87 333.0
41 TraesCS2A01G482800 chr7D 93.162 117 8 0 2049 2165 149848221 149848105 3.520000e-39 172.0
42 TraesCS2A01G482800 chr6B 91.346 104 9 0 2062 2165 12970635 12970532 2.760000e-30 143.0
43 TraesCS2A01G482800 chr5B 90.654 107 10 0 1905 2011 594151291 594151397 2.760000e-30 143.0
44 TraesCS2A01G482800 chr5D 96.970 33 1 0 1500 1532 509505315 509505283 3.700000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G482800 chr2A 718974865 718977527 2662 False 4918.000000 4918 100.000000 1 2663 1 chr2A.!!$F1 2662
1 TraesCS2A01G482800 chr2A 718964991 718965829 838 True 1138.000000 1138 91.320000 838 1668 1 chr2A.!!$R1 830
2 TraesCS2A01G482800 chr2D 584857882 584858763 881 True 1110.000000 1110 90.023000 837 1684 1 chr2D.!!$R4 847
3 TraesCS2A01G482800 chr2D 584866535 584868220 1685 False 1105.000000 1609 90.215500 5 1907 2 chr2D.!!$F4 1902
4 TraesCS2A01G482800 chr2D 333506814 333507319 505 False 736.000000 736 92.913000 2157 2663 1 chr2D.!!$F1 506
5 TraesCS2A01G482800 chr2D 643255842 643256346 504 False 736.000000 736 92.913000 2157 2663 1 chr2D.!!$F3 506
6 TraesCS2A01G482800 chr2B 705356693 705359210 2517 False 622.666667 1267 87.436667 1 1876 3 chr2B.!!$F2 1875
7 TraesCS2A01G482800 chr2B 705347859 705348890 1031 True 582.550000 1079 94.904500 965 1897 2 chr2B.!!$R1 932
8 TraesCS2A01G482800 chr3D 41745976 41746645 669 True 839.000000 839 89.270000 997 1666 1 chr3D.!!$R1 669
9 TraesCS2A01G482800 chr3D 89924064 89924569 505 False 752.000000 752 93.504000 2157 2663 1 chr3D.!!$F1 506
10 TraesCS2A01G482800 chr3D 581002594 581003110 516 False 745.000000 745 92.678000 2147 2663 1 chr3D.!!$F3 516
11 TraesCS2A01G482800 chr3D 476512902 476513407 505 False 736.000000 736 92.913000 2157 2663 1 chr3D.!!$F2 506
12 TraesCS2A01G482800 chr3A 53256667 53257339 672 True 828.000000 828 88.889000 993 1666 1 chr3A.!!$R1 673
13 TraesCS2A01G482800 chr3B 65268782 65269451 669 True 806.000000 806 88.376000 997 1666 1 chr3B.!!$R1 669
14 TraesCS2A01G482800 chr7A 717913847 717914353 506 False 754.000000 754 93.517000 2157 2663 1 chr7A.!!$F1 506
15 TraesCS2A01G482800 chr1D 433945390 433945896 506 False 743.000000 743 93.110000 2157 2663 1 chr1D.!!$F2 506
16 TraesCS2A01G482800 chr1A 425686904 425687409 505 True 741.000000 741 93.110000 2157 2663 1 chr1A.!!$R1 506
17 TraesCS2A01G482800 chrUn 49875351 49875911 560 True 665.000000 665 88.455000 1135 1683 1 chrUn.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 520 0.108851 GCACAATTAGGCCCGGTTTG 60.109 55.0 0.0 1.01 0.0 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2114 3236 0.03831 GGGAAGGAAGAGGTTGGTGG 59.962 60.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.094325 TGAAAACACGTAATAATAAGCAGGGG 59.906 38.462 0.00 0.00 0.00 4.79
40 41 4.518970 CACGTAATAATAAGCAGGGGCATT 59.481 41.667 0.00 0.00 44.61 3.56
82 83 3.392616 ACGCCATTTCTTCATCCTCCTAT 59.607 43.478 0.00 0.00 0.00 2.57
89 90 8.600668 CCATTTCTTCATCCTCCTATAAGATGA 58.399 37.037 0.00 0.00 43.46 2.92
92 93 8.553085 TTCTTCATCCTCCTATAAGATGACAA 57.447 34.615 1.57 0.00 44.50 3.18
161 162 5.527582 GGGTTCAGAGCGATGTAACATATTT 59.472 40.000 0.00 0.00 0.00 1.40
200 201 2.035066 GCAGTGCCTTCACAAGACAATT 59.965 45.455 2.85 0.00 45.49 2.32
217 218 8.307483 CAAGACAATTAGAGGTAGAGAACTGAA 58.693 37.037 0.00 0.00 0.00 3.02
221 222 8.871125 ACAATTAGAGGTAGAGAACTGAAGAAA 58.129 33.333 0.00 0.00 0.00 2.52
222 223 9.364989 CAATTAGAGGTAGAGAACTGAAGAAAG 57.635 37.037 0.00 0.00 0.00 2.62
281 282 1.618837 AGTCGCAATATACTCCCGCAT 59.381 47.619 0.00 0.00 0.00 4.73
282 283 1.726791 GTCGCAATATACTCCCGCATG 59.273 52.381 0.00 0.00 0.00 4.06
304 305 5.384336 TGGACATTTCAAAGACAATCCTCA 58.616 37.500 0.00 0.00 0.00 3.86
350 351 1.514087 GCTTGTCCCGATGACCGTA 59.486 57.895 3.12 0.00 43.78 4.02
359 360 0.744874 CGATGACCGTATCAGGTGGT 59.255 55.000 0.00 0.00 46.09 4.16
360 361 1.536072 CGATGACCGTATCAGGTGGTG 60.536 57.143 0.00 0.00 46.09 4.17
367 368 1.001120 TATCAGGTGGTGGCGAGGA 59.999 57.895 0.00 0.00 0.00 3.71
379 380 2.298661 GCGAGGAAGGAGGGGGAAA 61.299 63.158 0.00 0.00 0.00 3.13
385 386 1.309876 GAAGGAGGGGGAAAGGGAAT 58.690 55.000 0.00 0.00 0.00 3.01
388 389 0.259065 GGAGGGGGAAAGGGAATGTC 59.741 60.000 0.00 0.00 0.00 3.06
394 395 1.065709 GGGAAAGGGAATGTCGTAGCA 60.066 52.381 0.00 0.00 0.00 3.49
415 433 2.434774 GAAACCCTTGTCGCCCCT 59.565 61.111 0.00 0.00 0.00 4.79
420 438 1.987855 CCCTTGTCGCCCCTGAGTA 60.988 63.158 0.00 0.00 0.00 2.59
474 492 7.093902 GGAGGAAGGGTTGATTAGTTTTTAAGG 60.094 40.741 0.00 0.00 0.00 2.69
492 510 1.732259 AGGAAAGTCGCGCACAATTAG 59.268 47.619 8.75 0.00 0.00 1.73
493 511 1.202031 GGAAAGTCGCGCACAATTAGG 60.202 52.381 8.75 0.00 0.00 2.69
494 512 0.168128 AAAGTCGCGCACAATTAGGC 59.832 50.000 8.75 0.00 0.00 3.93
495 513 1.644786 AAGTCGCGCACAATTAGGCC 61.645 55.000 8.75 0.00 0.00 5.19
496 514 2.822255 TCGCGCACAATTAGGCCC 60.822 61.111 8.75 0.00 0.00 5.80
497 515 4.236416 CGCGCACAATTAGGCCCG 62.236 66.667 8.75 0.00 0.00 6.13
498 516 3.887868 GCGCACAATTAGGCCCGG 61.888 66.667 0.30 0.00 0.00 5.73
499 517 2.437716 CGCACAATTAGGCCCGGT 60.438 61.111 0.00 0.00 0.00 5.28
500 518 2.043980 CGCACAATTAGGCCCGGTT 61.044 57.895 0.00 0.00 0.00 4.44
501 519 1.591504 CGCACAATTAGGCCCGGTTT 61.592 55.000 0.00 0.00 0.00 3.27
502 520 0.108851 GCACAATTAGGCCCGGTTTG 60.109 55.000 0.00 1.01 0.00 2.93
503 521 0.530288 CACAATTAGGCCCGGTTTGG 59.470 55.000 0.00 0.00 37.55 3.28
504 522 0.113580 ACAATTAGGCCCGGTTTGGT 59.886 50.000 0.00 0.00 35.15 3.67
505 523 1.262417 CAATTAGGCCCGGTTTGGTT 58.738 50.000 0.00 0.00 35.15 3.67
506 524 1.621317 CAATTAGGCCCGGTTTGGTTT 59.379 47.619 0.00 0.00 35.15 3.27
507 525 2.826725 CAATTAGGCCCGGTTTGGTTTA 59.173 45.455 0.00 0.00 35.15 2.01
508 526 2.903375 TTAGGCCCGGTTTGGTTTAT 57.097 45.000 0.00 0.00 35.15 1.40
509 527 4.523168 ATTAGGCCCGGTTTGGTTTATA 57.477 40.909 0.00 0.00 35.15 0.98
510 528 2.903375 AGGCCCGGTTTGGTTTATAA 57.097 45.000 0.00 0.00 35.15 0.98
511 529 2.730382 AGGCCCGGTTTGGTTTATAAG 58.270 47.619 0.00 0.00 35.15 1.73
512 530 2.042026 AGGCCCGGTTTGGTTTATAAGT 59.958 45.455 0.00 0.00 35.15 2.24
513 531 2.424601 GGCCCGGTTTGGTTTATAAGTC 59.575 50.000 0.00 0.00 35.15 3.01
514 532 2.424601 GCCCGGTTTGGTTTATAAGTCC 59.575 50.000 0.00 2.91 35.15 3.85
515 533 3.874977 GCCCGGTTTGGTTTATAAGTCCT 60.875 47.826 0.00 0.00 35.15 3.85
516 534 4.626046 GCCCGGTTTGGTTTATAAGTCCTA 60.626 45.833 0.00 1.38 35.15 2.94
517 535 5.687780 CCCGGTTTGGTTTATAAGTCCTAT 58.312 41.667 0.00 0.00 35.15 2.57
518 536 5.529800 CCCGGTTTGGTTTATAAGTCCTATG 59.470 44.000 0.00 0.00 35.15 2.23
519 537 5.008316 CCGGTTTGGTTTATAAGTCCTATGC 59.992 44.000 0.00 0.00 0.00 3.14
520 538 5.008316 CGGTTTGGTTTATAAGTCCTATGCC 59.992 44.000 9.23 7.03 0.00 4.40
521 539 6.127101 GGTTTGGTTTATAAGTCCTATGCCT 58.873 40.000 9.23 0.00 0.00 4.75
522 540 6.605995 GGTTTGGTTTATAAGTCCTATGCCTT 59.394 38.462 9.23 0.00 0.00 4.35
523 541 7.123697 GGTTTGGTTTATAAGTCCTATGCCTTT 59.876 37.037 9.23 0.00 0.00 3.11
524 542 8.528643 GTTTGGTTTATAAGTCCTATGCCTTTT 58.471 33.333 9.23 0.00 0.00 2.27
525 543 8.658840 TTGGTTTATAAGTCCTATGCCTTTTT 57.341 30.769 9.23 0.00 0.00 1.94
551 569 9.856162 TTTAGTCCCAACTTATAAGTTTCAAGT 57.144 29.630 24.99 17.47 46.52 3.16
552 570 7.981102 AGTCCCAACTTATAAGTTTCAAGTC 57.019 36.000 24.99 14.35 46.52 3.01
553 571 6.940867 AGTCCCAACTTATAAGTTTCAAGTCC 59.059 38.462 24.99 11.35 46.52 3.85
554 572 6.150641 GTCCCAACTTATAAGTTTCAAGTCCC 59.849 42.308 24.99 7.28 46.52 4.46
555 573 6.045106 TCCCAACTTATAAGTTTCAAGTCCCT 59.955 38.462 24.99 1.11 46.52 4.20
556 574 7.238096 TCCCAACTTATAAGTTTCAAGTCCCTA 59.762 37.037 24.99 3.15 46.52 3.53
557 575 7.886446 CCCAACTTATAAGTTTCAAGTCCCTAA 59.114 37.037 24.99 0.00 46.52 2.69
558 576 9.292195 CCAACTTATAAGTTTCAAGTCCCTAAA 57.708 33.333 24.99 0.00 46.52 1.85
564 582 6.710597 AAGTTTCAAGTCCCTAAAAAGTCC 57.289 37.500 0.00 0.00 0.00 3.85
565 583 5.138276 AGTTTCAAGTCCCTAAAAAGTCCC 58.862 41.667 0.00 0.00 0.00 4.46
566 584 5.103643 AGTTTCAAGTCCCTAAAAAGTCCCT 60.104 40.000 0.00 0.00 0.00 4.20
567 585 6.102174 AGTTTCAAGTCCCTAAAAAGTCCCTA 59.898 38.462 0.00 0.00 0.00 3.53
568 586 5.494390 TCAAGTCCCTAAAAAGTCCCTAC 57.506 43.478 0.00 0.00 0.00 3.18
569 587 4.287845 TCAAGTCCCTAAAAAGTCCCTACC 59.712 45.833 0.00 0.00 0.00 3.18
570 588 4.157668 AGTCCCTAAAAAGTCCCTACCT 57.842 45.455 0.00 0.00 0.00 3.08
571 589 3.844804 AGTCCCTAAAAAGTCCCTACCTG 59.155 47.826 0.00 0.00 0.00 4.00
572 590 3.586174 GTCCCTAAAAAGTCCCTACCTGT 59.414 47.826 0.00 0.00 0.00 4.00
573 591 4.042560 GTCCCTAAAAAGTCCCTACCTGTT 59.957 45.833 0.00 0.00 0.00 3.16
574 592 4.666431 TCCCTAAAAAGTCCCTACCTGTTT 59.334 41.667 0.00 0.00 0.00 2.83
575 593 4.765339 CCCTAAAAAGTCCCTACCTGTTTG 59.235 45.833 0.00 0.00 0.00 2.93
576 594 4.765339 CCTAAAAAGTCCCTACCTGTTTGG 59.235 45.833 0.00 0.00 42.93 3.28
587 605 2.364972 CCTGTTTGGTTCTTGGGACT 57.635 50.000 0.00 0.00 0.00 3.85
588 606 2.666317 CCTGTTTGGTTCTTGGGACTT 58.334 47.619 0.00 0.00 0.00 3.01
589 607 3.827722 CCTGTTTGGTTCTTGGGACTTA 58.172 45.455 0.00 0.00 0.00 2.24
590 608 4.211920 CCTGTTTGGTTCTTGGGACTTAA 58.788 43.478 0.00 0.00 0.00 1.85
591 609 4.832823 CCTGTTTGGTTCTTGGGACTTAAT 59.167 41.667 0.00 0.00 0.00 1.40
592 610 6.007703 CCTGTTTGGTTCTTGGGACTTAATA 58.992 40.000 0.00 0.00 0.00 0.98
593 611 6.663523 CCTGTTTGGTTCTTGGGACTTAATAT 59.336 38.462 0.00 0.00 0.00 1.28
594 612 7.362920 CCTGTTTGGTTCTTGGGACTTAATATG 60.363 40.741 0.00 0.00 0.00 1.78
595 613 6.435904 TGTTTGGTTCTTGGGACTTAATATGG 59.564 38.462 0.00 0.00 0.00 2.74
596 614 6.395780 TTGGTTCTTGGGACTTAATATGGA 57.604 37.500 0.00 0.00 0.00 3.41
597 615 5.751586 TGGTTCTTGGGACTTAATATGGAC 58.248 41.667 0.00 0.00 0.00 4.02
598 616 5.491078 TGGTTCTTGGGACTTAATATGGACT 59.509 40.000 0.00 0.00 0.00 3.85
599 617 6.674861 TGGTTCTTGGGACTTAATATGGACTA 59.325 38.462 0.00 0.00 0.00 2.59
600 618 7.183112 TGGTTCTTGGGACTTAATATGGACTAA 59.817 37.037 0.00 0.00 0.00 2.24
601 619 8.050930 GGTTCTTGGGACTTAATATGGACTAAA 58.949 37.037 0.00 0.00 0.00 1.85
602 620 9.457436 GTTCTTGGGACTTAATATGGACTAAAA 57.543 33.333 0.00 0.00 0.00 1.52
603 621 9.681062 TTCTTGGGACTTAATATGGACTAAAAG 57.319 33.333 0.00 0.00 0.00 2.27
604 622 9.053472 TCTTGGGACTTAATATGGACTAAAAGA 57.947 33.333 0.00 0.00 0.00 2.52
605 623 9.110502 CTTGGGACTTAATATGGACTAAAAGAC 57.889 37.037 0.00 0.00 0.00 3.01
606 624 7.571025 TGGGACTTAATATGGACTAAAAGACC 58.429 38.462 0.00 0.00 0.00 3.85
607 625 7.183112 TGGGACTTAATATGGACTAAAAGACCA 59.817 37.037 0.74 0.74 43.65 4.02
627 645 9.448587 AAGACCATATTACAACTATAAGTCCCT 57.551 33.333 0.00 0.00 0.00 4.20
638 656 9.145442 ACAACTATAAGTCCCTATAAGTCCTTC 57.855 37.037 0.00 0.00 0.00 3.46
639 657 8.586744 CAACTATAAGTCCCTATAAGTCCTTCC 58.413 40.741 0.00 0.00 0.00 3.46
640 658 8.071235 ACTATAAGTCCCTATAAGTCCTTCCT 57.929 38.462 0.00 0.00 0.00 3.36
641 659 8.521301 ACTATAAGTCCCTATAAGTCCTTCCTT 58.479 37.037 0.00 0.00 0.00 3.36
642 660 5.959583 AAGTCCCTATAAGTCCTTCCTTG 57.040 43.478 0.00 0.00 0.00 3.61
643 661 5.222278 AGTCCCTATAAGTCCTTCCTTGA 57.778 43.478 0.00 0.00 0.00 3.02
644 662 5.600749 AGTCCCTATAAGTCCTTCCTTGAA 58.399 41.667 0.00 0.00 0.00 2.69
645 663 6.030082 AGTCCCTATAAGTCCTTCCTTGAAA 58.970 40.000 0.00 0.00 0.00 2.69
646 664 6.157123 AGTCCCTATAAGTCCTTCCTTGAAAG 59.843 42.308 0.00 0.00 0.00 2.62
647 665 6.030082 TCCCTATAAGTCCTTCCTTGAAAGT 58.970 40.000 0.00 0.00 0.00 2.66
648 666 6.156429 TCCCTATAAGTCCTTCCTTGAAAGTC 59.844 42.308 0.00 0.00 0.00 3.01
649 667 6.157123 CCCTATAAGTCCTTCCTTGAAAGTCT 59.843 42.308 0.00 0.00 0.00 3.24
650 668 7.311360 CCCTATAAGTCCTTCCTTGAAAGTCTT 60.311 40.741 0.00 0.00 0.00 3.01
651 669 8.759782 CCTATAAGTCCTTCCTTGAAAGTCTTA 58.240 37.037 0.00 0.00 31.69 2.10
655 673 8.768501 AAGTCCTTCCTTGAAAGTCTTATTTT 57.231 30.769 0.00 0.00 0.00 1.82
656 674 9.862149 AAGTCCTTCCTTGAAAGTCTTATTTTA 57.138 29.630 0.00 0.00 0.00 1.52
684 702 8.477419 AGTTCCAAATCTTCATTTTAAGTCCA 57.523 30.769 0.00 0.00 28.97 4.02
685 703 9.093458 AGTTCCAAATCTTCATTTTAAGTCCAT 57.907 29.630 0.00 0.00 28.97 3.41
705 723 9.440761 AGTCCATATAAGTCTCTTCTATTTGGT 57.559 33.333 0.00 0.00 0.00 3.67
714 732 7.569240 AGTCTCTTCTATTTGGTTTAGATGGG 58.431 38.462 0.00 0.00 0.00 4.00
715 733 7.403231 AGTCTCTTCTATTTGGTTTAGATGGGA 59.597 37.037 0.00 0.00 31.48 4.37
716 734 7.496263 GTCTCTTCTATTTGGTTTAGATGGGAC 59.504 40.741 9.49 9.49 40.83 4.46
717 735 7.403231 TCTCTTCTATTTGGTTTAGATGGGACT 59.597 37.037 0.00 0.00 29.89 3.85
718 736 7.928873 TCTTCTATTTGGTTTAGATGGGACTT 58.071 34.615 0.00 0.00 0.00 3.01
719 737 9.053472 TCTTCTATTTGGTTTAGATGGGACTTA 57.947 33.333 0.00 0.00 0.00 2.24
720 738 9.853177 CTTCTATTTGGTTTAGATGGGACTTAT 57.147 33.333 0.00 0.00 0.00 1.73
723 741 9.726438 CTATTTGGTTTAGATGGGACTTATAGG 57.274 37.037 0.00 0.00 0.00 2.57
724 742 6.509523 TTGGTTTAGATGGGACTTATAGGG 57.490 41.667 0.00 0.00 0.00 3.53
725 743 5.795079 TGGTTTAGATGGGACTTATAGGGA 58.205 41.667 0.00 0.00 0.00 4.20
726 744 5.605488 TGGTTTAGATGGGACTTATAGGGAC 59.395 44.000 0.00 0.00 0.00 4.46
727 745 5.845065 GGTTTAGATGGGACTTATAGGGACT 59.155 44.000 0.00 0.00 46.37 3.85
728 746 6.329460 GGTTTAGATGGGACTTATAGGGACTT 59.671 42.308 0.00 0.00 41.75 3.01
729 747 7.147355 GGTTTAGATGGGACTTATAGGGACTTT 60.147 40.741 0.00 0.00 41.75 2.66
730 748 8.272889 GTTTAGATGGGACTTATAGGGACTTTT 58.727 37.037 0.00 0.00 41.75 2.27
731 749 6.910259 AGATGGGACTTATAGGGACTTTTT 57.090 37.500 0.00 0.00 41.75 1.94
762 780 2.048444 ACCCTATGCTCGACGACTTA 57.952 50.000 0.00 0.00 0.00 2.24
775 793 1.764134 ACGACTTAACCAGTTGACCCA 59.236 47.619 0.00 0.00 39.12 4.51
807 825 1.004918 GGTCCTCCACTCGTTGGTG 60.005 63.158 5.84 3.91 46.97 4.17
869 899 7.363793 CGAGTGAAAAATAAATCCCCAATTCCT 60.364 37.037 0.00 0.00 0.00 3.36
884 919 0.179084 TTCCTCAATCCGCATCGACC 60.179 55.000 0.00 0.00 0.00 4.79
925 980 3.798511 GCCACCCCCTACCTCAGC 61.799 72.222 0.00 0.00 0.00 4.26
986 1075 0.594540 CAGCTCAAGATCGAGGCTCG 60.595 60.000 30.10 30.10 42.10 5.03
1144 1233 1.641552 CCTCCTCCTCGTCCTCCTCT 61.642 65.000 0.00 0.00 0.00 3.69
1472 1567 2.742372 CGTGGCCGAGTTCAAGGG 60.742 66.667 0.00 0.00 35.63 3.95
1670 1773 2.990066 AGGTACTGCTAGTGATTGGC 57.010 50.000 0.00 0.00 37.18 4.52
1801 2861 5.106515 GGGTAGATCAGTCTTTCAGCAAAAC 60.107 44.000 0.00 0.00 35.87 2.43
1843 2939 6.204882 ACTCAAACCTAACATCTAACAGCAAC 59.795 38.462 0.00 0.00 0.00 4.17
1907 3029 4.764308 TGTAGCACATCATAACAGCCAAAA 59.236 37.500 0.00 0.00 0.00 2.44
1908 3030 4.870123 AGCACATCATAACAGCCAAAAA 57.130 36.364 0.00 0.00 0.00 1.94
1954 3076 8.322906 TCTTGATAATCATACTAAAATGGCCG 57.677 34.615 0.00 0.00 0.00 6.13
1955 3077 7.936847 TCTTGATAATCATACTAAAATGGCCGT 59.063 33.333 0.00 0.00 0.00 5.68
1956 3078 9.214957 CTTGATAATCATACTAAAATGGCCGTA 57.785 33.333 0.00 0.00 0.00 4.02
1957 3079 9.733556 TTGATAATCATACTAAAATGGCCGTAT 57.266 29.630 0.00 0.00 0.00 3.06
1958 3080 9.161629 TGATAATCATACTAAAATGGCCGTATG 57.838 33.333 16.02 16.02 40.13 2.39
1959 3081 5.880054 ATCATACTAAAATGGCCGTATGC 57.120 39.130 16.90 0.00 39.17 3.14
1960 3082 4.709250 TCATACTAAAATGGCCGTATGCA 58.291 39.130 16.90 0.00 43.89 3.96
1961 3083 5.312895 TCATACTAAAATGGCCGTATGCAT 58.687 37.500 16.90 3.79 43.89 3.96
1962 3084 5.411361 TCATACTAAAATGGCCGTATGCATC 59.589 40.000 16.90 0.00 43.89 3.91
1963 3085 3.820557 ACTAAAATGGCCGTATGCATCT 58.179 40.909 0.19 0.00 43.89 2.90
1964 3086 3.815401 ACTAAAATGGCCGTATGCATCTC 59.185 43.478 0.19 0.00 43.89 2.75
1965 3087 2.645838 AAATGGCCGTATGCATCTCT 57.354 45.000 0.19 0.00 43.89 3.10
1966 3088 3.769739 AAATGGCCGTATGCATCTCTA 57.230 42.857 0.19 0.00 43.89 2.43
1967 3089 2.751166 ATGGCCGTATGCATCTCTAC 57.249 50.000 0.19 0.00 43.89 2.59
1968 3090 1.704641 TGGCCGTATGCATCTCTACT 58.295 50.000 0.19 0.00 43.89 2.57
1969 3091 2.039418 TGGCCGTATGCATCTCTACTT 58.961 47.619 0.19 0.00 43.89 2.24
1970 3092 2.434336 TGGCCGTATGCATCTCTACTTT 59.566 45.455 0.19 0.00 43.89 2.66
1971 3093 2.802816 GGCCGTATGCATCTCTACTTTG 59.197 50.000 0.19 0.00 43.89 2.77
1972 3094 3.458189 GCCGTATGCATCTCTACTTTGT 58.542 45.455 0.19 0.00 40.77 2.83
1973 3095 3.246226 GCCGTATGCATCTCTACTTTGTG 59.754 47.826 0.19 0.00 40.77 3.33
1974 3096 3.246226 CCGTATGCATCTCTACTTTGTGC 59.754 47.826 0.19 0.00 36.39 4.57
1977 3099 3.683365 TGCATCTCTACTTTGTGCAGA 57.317 42.857 0.00 0.00 40.51 4.26
1978 3100 3.593096 TGCATCTCTACTTTGTGCAGAG 58.407 45.455 0.00 0.00 40.51 3.35
1979 3101 2.935201 GCATCTCTACTTTGTGCAGAGG 59.065 50.000 0.00 0.00 36.93 3.69
1980 3102 3.618507 GCATCTCTACTTTGTGCAGAGGT 60.619 47.826 0.00 0.00 36.93 3.85
1981 3103 3.944055 TCTCTACTTTGTGCAGAGGTC 57.056 47.619 0.00 0.00 36.93 3.85
1982 3104 2.229062 TCTCTACTTTGTGCAGAGGTCG 59.771 50.000 0.00 0.00 36.93 4.79
1983 3105 1.272490 TCTACTTTGTGCAGAGGTCGG 59.728 52.381 0.00 0.00 0.00 4.79
1984 3106 0.320374 TACTTTGTGCAGAGGTCGGG 59.680 55.000 0.00 0.00 0.00 5.14
1985 3107 1.672356 CTTTGTGCAGAGGTCGGGG 60.672 63.158 0.00 0.00 0.00 5.73
1986 3108 3.190738 TTTGTGCAGAGGTCGGGGG 62.191 63.158 0.00 0.00 0.00 5.40
1987 3109 4.631740 TGTGCAGAGGTCGGGGGA 62.632 66.667 0.00 0.00 0.00 4.81
1988 3110 3.775654 GTGCAGAGGTCGGGGGAG 61.776 72.222 0.00 0.00 0.00 4.30
1989 3111 4.316823 TGCAGAGGTCGGGGGAGT 62.317 66.667 0.00 0.00 0.00 3.85
1990 3112 3.775654 GCAGAGGTCGGGGGAGTG 61.776 72.222 0.00 0.00 0.00 3.51
1991 3113 2.037367 CAGAGGTCGGGGGAGTGA 59.963 66.667 0.00 0.00 0.00 3.41
1992 3114 1.609501 CAGAGGTCGGGGGAGTGAA 60.610 63.158 0.00 0.00 0.00 3.18
1993 3115 1.157751 AGAGGTCGGGGGAGTGAAA 59.842 57.895 0.00 0.00 0.00 2.69
1994 3116 0.252742 AGAGGTCGGGGGAGTGAAAT 60.253 55.000 0.00 0.00 0.00 2.17
1995 3117 0.618981 GAGGTCGGGGGAGTGAAATT 59.381 55.000 0.00 0.00 0.00 1.82
1996 3118 0.618981 AGGTCGGGGGAGTGAAATTC 59.381 55.000 0.00 0.00 0.00 2.17
1997 3119 0.618981 GGTCGGGGGAGTGAAATTCT 59.381 55.000 0.00 0.00 0.00 2.40
1998 3120 1.407025 GGTCGGGGGAGTGAAATTCTC 60.407 57.143 0.00 0.00 0.00 2.87
1999 3121 0.909623 TCGGGGGAGTGAAATTCTCC 59.090 55.000 3.55 3.55 43.73 3.71
2005 3127 3.388552 GGAGTGAAATTCTCCCCCATT 57.611 47.619 1.01 0.00 43.90 3.16
2006 3128 3.713003 GGAGTGAAATTCTCCCCCATTT 58.287 45.455 1.01 0.00 43.90 2.32
2007 3129 4.096681 GGAGTGAAATTCTCCCCCATTTT 58.903 43.478 1.01 0.00 43.90 1.82
2008 3130 4.532126 GGAGTGAAATTCTCCCCCATTTTT 59.468 41.667 1.01 0.00 43.90 1.94
2009 3131 5.719563 GGAGTGAAATTCTCCCCCATTTTTA 59.280 40.000 1.01 0.00 43.90 1.52
2010 3132 6.212589 GGAGTGAAATTCTCCCCCATTTTTAA 59.787 38.462 1.01 0.00 43.90 1.52
2011 3133 7.092891 GGAGTGAAATTCTCCCCCATTTTTAAT 60.093 37.037 1.01 0.00 43.90 1.40
2012 3134 7.623630 AGTGAAATTCTCCCCCATTTTTAATG 58.376 34.615 0.00 0.00 0.00 1.90
2013 3135 6.823182 GTGAAATTCTCCCCCATTTTTAATGG 59.177 38.462 10.77 10.77 38.88 3.16
2014 3136 6.503570 TGAAATTCTCCCCCATTTTTAATGGT 59.496 34.615 15.28 0.00 37.48 3.55
2015 3137 5.955961 ATTCTCCCCCATTTTTAATGGTG 57.044 39.130 15.28 5.94 37.48 4.17
2016 3138 4.412060 TCTCCCCCATTTTTAATGGTGT 57.588 40.909 15.28 0.00 37.48 4.16
2017 3139 4.349365 TCTCCCCCATTTTTAATGGTGTC 58.651 43.478 15.28 0.00 37.48 3.67
2018 3140 4.093011 CTCCCCCATTTTTAATGGTGTCA 58.907 43.478 15.28 0.00 37.48 3.58
2019 3141 4.093011 TCCCCCATTTTTAATGGTGTCAG 58.907 43.478 15.28 2.33 37.48 3.51
2020 3142 3.197549 CCCCCATTTTTAATGGTGTCAGG 59.802 47.826 15.28 9.62 37.48 3.86
2021 3143 3.369366 CCCCATTTTTAATGGTGTCAGGC 60.369 47.826 15.28 0.00 37.48 4.85
2022 3144 3.260380 CCCATTTTTAATGGTGTCAGGCA 59.740 43.478 15.28 0.00 37.48 4.75
2023 3145 4.497300 CCATTTTTAATGGTGTCAGGCAG 58.503 43.478 9.74 0.00 34.56 4.85
2024 3146 3.658757 TTTTTAATGGTGTCAGGCAGC 57.341 42.857 0.00 0.00 45.22 5.25
2025 3147 2.584835 TTTAATGGTGTCAGGCAGCT 57.415 45.000 5.67 0.00 45.23 4.24
2026 3148 2.584835 TTAATGGTGTCAGGCAGCTT 57.415 45.000 5.67 0.00 45.23 3.74
2027 3149 2.113860 TAATGGTGTCAGGCAGCTTC 57.886 50.000 5.67 0.00 45.23 3.86
2028 3150 0.957395 AATGGTGTCAGGCAGCTTCG 60.957 55.000 5.67 0.00 45.23 3.79
2029 3151 2.743928 GGTGTCAGGCAGCTTCGG 60.744 66.667 0.00 0.00 41.99 4.30
2030 3152 3.426568 GTGTCAGGCAGCTTCGGC 61.427 66.667 0.00 0.00 42.17 5.54
2040 3162 3.354678 GCTTCGGCTTTTCTGGCA 58.645 55.556 0.00 0.00 38.08 4.92
2041 3163 1.885871 GCTTCGGCTTTTCTGGCAT 59.114 52.632 0.00 0.00 38.08 4.40
2042 3164 0.457337 GCTTCGGCTTTTCTGGCATG 60.457 55.000 0.00 0.00 38.08 4.06
2043 3165 0.457337 CTTCGGCTTTTCTGGCATGC 60.457 55.000 9.90 9.90 0.00 4.06
2044 3166 0.895100 TTCGGCTTTTCTGGCATGCT 60.895 50.000 18.92 0.00 0.00 3.79
2045 3167 1.138247 CGGCTTTTCTGGCATGCTC 59.862 57.895 18.92 8.46 0.00 4.26
2046 3168 1.138247 GGCTTTTCTGGCATGCTCG 59.862 57.895 18.92 9.02 0.00 5.03
2047 3169 1.515736 GCTTTTCTGGCATGCTCGC 60.516 57.895 18.92 0.95 0.00 5.03
2099 3221 4.119363 GGCGGAACCCTAACCCCC 62.119 72.222 0.00 0.00 0.00 5.40
2100 3222 3.332385 GCGGAACCCTAACCCCCA 61.332 66.667 0.00 0.00 0.00 4.96
2101 3223 2.672908 CGGAACCCTAACCCCCAC 59.327 66.667 0.00 0.00 0.00 4.61
2102 3224 2.975265 CGGAACCCTAACCCCCACC 61.975 68.421 0.00 0.00 0.00 4.61
2103 3225 2.672908 GAACCCTAACCCCCACCG 59.327 66.667 0.00 0.00 0.00 4.94
2104 3226 3.633609 GAACCCTAACCCCCACCGC 62.634 68.421 0.00 0.00 0.00 5.68
2124 3246 4.410400 CCGGGCTCCACCAACCTC 62.410 72.222 0.00 0.00 42.05 3.85
2125 3247 3.322466 CGGGCTCCACCAACCTCT 61.322 66.667 0.00 0.00 42.05 3.69
2126 3248 2.895424 CGGGCTCCACCAACCTCTT 61.895 63.158 0.00 0.00 42.05 2.85
2127 3249 1.002011 GGGCTCCACCAACCTCTTC 60.002 63.158 0.00 0.00 42.05 2.87
2128 3250 1.002011 GGCTCCACCAACCTCTTCC 60.002 63.158 0.00 0.00 38.86 3.46
2129 3251 1.492993 GGCTCCACCAACCTCTTCCT 61.493 60.000 0.00 0.00 38.86 3.36
2130 3252 0.402121 GCTCCACCAACCTCTTCCTT 59.598 55.000 0.00 0.00 0.00 3.36
2131 3253 1.611936 GCTCCACCAACCTCTTCCTTC 60.612 57.143 0.00 0.00 0.00 3.46
2132 3254 1.003696 CTCCACCAACCTCTTCCTTCC 59.996 57.143 0.00 0.00 0.00 3.46
2133 3255 0.038310 CCACCAACCTCTTCCTTCCC 59.962 60.000 0.00 0.00 0.00 3.97
2134 3256 1.068121 CACCAACCTCTTCCTTCCCT 58.932 55.000 0.00 0.00 0.00 4.20
2135 3257 1.425448 CACCAACCTCTTCCTTCCCTT 59.575 52.381 0.00 0.00 0.00 3.95
2136 3258 1.705745 ACCAACCTCTTCCTTCCCTTC 59.294 52.381 0.00 0.00 0.00 3.46
2137 3259 1.339151 CCAACCTCTTCCTTCCCTTCG 60.339 57.143 0.00 0.00 0.00 3.79
2138 3260 0.325272 AACCTCTTCCTTCCCTTCGC 59.675 55.000 0.00 0.00 0.00 4.70
2139 3261 1.222113 CCTCTTCCTTCCCTTCGCC 59.778 63.158 0.00 0.00 0.00 5.54
2140 3262 1.553690 CCTCTTCCTTCCCTTCGCCA 61.554 60.000 0.00 0.00 0.00 5.69
2141 3263 0.391793 CTCTTCCTTCCCTTCGCCAC 60.392 60.000 0.00 0.00 0.00 5.01
2142 3264 1.377333 CTTCCTTCCCTTCGCCACC 60.377 63.158 0.00 0.00 0.00 4.61
2143 3265 2.124507 CTTCCTTCCCTTCGCCACCA 62.125 60.000 0.00 0.00 0.00 4.17
2144 3266 1.497309 TTCCTTCCCTTCGCCACCAT 61.497 55.000 0.00 0.00 0.00 3.55
2145 3267 1.000896 CCTTCCCTTCGCCACCATT 60.001 57.895 0.00 0.00 0.00 3.16
2215 3337 1.757118 GATGTTCTGTCTGGATCCCGA 59.243 52.381 9.90 5.33 0.00 5.14
2220 3342 2.833582 GTCTGGATCCCGAGGCGA 60.834 66.667 9.90 0.00 0.00 5.54
2290 3413 1.071471 CGTGGTGCAGTCCCTTTCT 59.929 57.895 0.00 0.00 0.00 2.52
2515 3638 2.889170 ATCTAGGCGGCTAGATCTGA 57.111 50.000 40.79 25.69 41.35 3.27
2517 3640 1.422024 TCTAGGCGGCTAGATCTGAGT 59.578 52.381 36.84 4.95 31.64 3.41
2570 3693 0.909623 CGGGTGGATTACTTGGGACT 59.090 55.000 0.00 0.00 0.00 3.85
2594 3717 1.687563 CGGGTGAAAACCTGGTCTTT 58.312 50.000 0.00 3.28 32.56 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.059945 CGTGTAAAGATTGAAGAGTGAAAATGC 59.940 37.037 0.00 0.00 0.00 3.56
40 41 5.049680 GGCGTGTAAAGATTGAAGAGTGAAA 60.050 40.000 0.00 0.00 0.00 2.69
138 139 6.604735 AAATATGTTACATCGCTCTGAACC 57.395 37.500 0.00 0.00 0.00 3.62
142 143 6.065153 GCGTTAAATATGTTACATCGCTCTG 58.935 40.000 16.00 0.08 38.46 3.35
144 145 6.211664 AGCGTTAAATATGTTACATCGCTC 57.788 37.500 18.87 0.00 46.35 5.03
161 162 3.006940 CTGCCCATAAGTGAAAGCGTTA 58.993 45.455 0.00 0.00 0.00 3.18
200 201 6.151985 CAGCTTTCTTCAGTTCTCTACCTCTA 59.848 42.308 0.00 0.00 0.00 2.43
217 218 3.893813 AGCCTTTGAAATGTCAGCTTTCT 59.106 39.130 0.00 0.00 30.75 2.52
221 222 1.891150 CCAGCCTTTGAAATGTCAGCT 59.109 47.619 0.00 0.00 34.14 4.24
222 223 1.670967 GCCAGCCTTTGAAATGTCAGC 60.671 52.381 0.00 0.00 34.49 4.26
281 282 5.241506 GTGAGGATTGTCTTTGAAATGTCCA 59.758 40.000 0.00 0.00 0.00 4.02
282 283 5.474876 AGTGAGGATTGTCTTTGAAATGTCC 59.525 40.000 0.00 0.00 0.00 4.02
343 344 1.895020 GCCACCACCTGATACGGTCA 61.895 60.000 0.00 0.00 34.29 4.02
350 351 1.903877 CTTCCTCGCCACCACCTGAT 61.904 60.000 0.00 0.00 0.00 2.90
360 361 4.798682 TCCCCCTCCTTCCTCGCC 62.799 72.222 0.00 0.00 0.00 5.54
367 368 1.010795 CATTCCCTTTCCCCCTCCTT 58.989 55.000 0.00 0.00 0.00 3.36
379 380 1.338136 CCCCTGCTACGACATTCCCT 61.338 60.000 0.00 0.00 0.00 4.20
385 386 1.675219 GGTTTCCCCTGCTACGACA 59.325 57.895 0.00 0.00 0.00 4.35
439 457 2.599597 CCTTCCTCCCCATGCCTG 59.400 66.667 0.00 0.00 0.00 4.85
440 458 2.697644 CCCTTCCTCCCCATGCCT 60.698 66.667 0.00 0.00 0.00 4.75
453 471 9.209048 ACTTTCCTTAAAAACTAATCAACCCTT 57.791 29.630 0.00 0.00 0.00 3.95
474 492 1.790481 GCCTAATTGTGCGCGACTTTC 60.790 52.381 12.10 0.00 0.00 2.62
492 510 2.424601 GACTTATAAACCAAACCGGGCC 59.575 50.000 6.32 0.00 40.22 5.80
493 511 2.424601 GGACTTATAAACCAAACCGGGC 59.575 50.000 6.32 0.00 40.22 6.13
494 512 3.959293 AGGACTTATAAACCAAACCGGG 58.041 45.455 6.32 0.00 40.22 5.73
495 513 5.008316 GCATAGGACTTATAAACCAAACCGG 59.992 44.000 0.00 0.00 42.50 5.28
496 514 5.008316 GGCATAGGACTTATAAACCAAACCG 59.992 44.000 9.91 0.00 0.00 4.44
497 515 6.127101 AGGCATAGGACTTATAAACCAAACC 58.873 40.000 9.91 6.46 0.00 3.27
498 516 7.640597 AAGGCATAGGACTTATAAACCAAAC 57.359 36.000 0.00 0.00 41.85 2.93
499 517 8.658840 AAAAGGCATAGGACTTATAAACCAAA 57.341 30.769 0.00 0.76 43.25 3.28
500 518 8.658840 AAAAAGGCATAGGACTTATAAACCAA 57.341 30.769 0.00 0.00 43.25 3.67
529 547 7.962598 AGGGACTTGAAACTTATAAGTTGGGAC 60.963 40.741 27.29 19.11 42.47 4.46
530 548 6.045106 AGGGACTTGAAACTTATAAGTTGGGA 59.955 38.462 27.29 16.12 42.47 4.37
531 549 6.246163 AGGGACTTGAAACTTATAAGTTGGG 58.754 40.000 27.29 19.26 42.47 4.12
532 550 8.857694 TTAGGGACTTGAAACTTATAAGTTGG 57.142 34.615 27.29 19.53 44.05 3.77
538 556 9.511272 GGACTTTTTAGGGACTTGAAACTTATA 57.489 33.333 0.00 0.00 41.75 0.98
539 557 7.450634 GGGACTTTTTAGGGACTTGAAACTTAT 59.549 37.037 0.00 0.00 41.75 1.73
540 558 6.774170 GGGACTTTTTAGGGACTTGAAACTTA 59.226 38.462 0.00 0.00 41.75 2.24
541 559 5.597182 GGGACTTTTTAGGGACTTGAAACTT 59.403 40.000 0.00 0.00 41.75 2.66
542 560 5.103643 AGGGACTTTTTAGGGACTTGAAACT 60.104 40.000 0.00 0.00 34.75 2.66
543 561 5.138276 AGGGACTTTTTAGGGACTTGAAAC 58.862 41.667 0.00 0.00 34.75 2.78
544 562 5.397553 AGGGACTTTTTAGGGACTTGAAA 57.602 39.130 0.00 0.00 34.75 2.69
545 563 5.221986 GGTAGGGACTTTTTAGGGACTTGAA 60.222 44.000 0.00 0.00 39.49 2.69
546 564 4.287845 GGTAGGGACTTTTTAGGGACTTGA 59.712 45.833 0.00 0.00 39.49 3.02
547 565 4.288887 AGGTAGGGACTTTTTAGGGACTTG 59.711 45.833 0.00 0.00 39.49 3.16
548 566 4.288887 CAGGTAGGGACTTTTTAGGGACTT 59.711 45.833 0.00 0.00 39.49 3.01
549 567 3.844804 CAGGTAGGGACTTTTTAGGGACT 59.155 47.826 0.00 0.00 41.75 3.85
550 568 3.586174 ACAGGTAGGGACTTTTTAGGGAC 59.414 47.826 0.00 0.00 41.75 4.46
551 569 3.878086 ACAGGTAGGGACTTTTTAGGGA 58.122 45.455 0.00 0.00 41.75 4.20
552 570 4.652679 AACAGGTAGGGACTTTTTAGGG 57.347 45.455 0.00 0.00 41.75 3.53
553 571 4.765339 CCAAACAGGTAGGGACTTTTTAGG 59.235 45.833 0.00 0.00 41.75 2.69
554 572 5.959618 CCAAACAGGTAGGGACTTTTTAG 57.040 43.478 0.00 0.00 41.75 1.85
568 586 2.364972 AGTCCCAAGAACCAAACAGG 57.635 50.000 0.00 0.00 45.67 4.00
569 587 7.362920 CCATATTAAGTCCCAAGAACCAAACAG 60.363 40.741 0.00 0.00 0.00 3.16
570 588 6.435904 CCATATTAAGTCCCAAGAACCAAACA 59.564 38.462 0.00 0.00 0.00 2.83
571 589 6.661805 TCCATATTAAGTCCCAAGAACCAAAC 59.338 38.462 0.00 0.00 0.00 2.93
572 590 6.661805 GTCCATATTAAGTCCCAAGAACCAAA 59.338 38.462 0.00 0.00 0.00 3.28
573 591 6.011981 AGTCCATATTAAGTCCCAAGAACCAA 60.012 38.462 0.00 0.00 0.00 3.67
574 592 5.491078 AGTCCATATTAAGTCCCAAGAACCA 59.509 40.000 0.00 0.00 0.00 3.67
575 593 6.002653 AGTCCATATTAAGTCCCAAGAACC 57.997 41.667 0.00 0.00 0.00 3.62
576 594 9.457436 TTTTAGTCCATATTAAGTCCCAAGAAC 57.543 33.333 0.00 0.00 0.00 3.01
577 595 9.681062 CTTTTAGTCCATATTAAGTCCCAAGAA 57.319 33.333 0.00 0.00 0.00 2.52
578 596 9.053472 TCTTTTAGTCCATATTAAGTCCCAAGA 57.947 33.333 0.00 0.00 0.00 3.02
579 597 9.110502 GTCTTTTAGTCCATATTAAGTCCCAAG 57.889 37.037 0.00 0.00 0.00 3.61
580 598 8.050930 GGTCTTTTAGTCCATATTAAGTCCCAA 58.949 37.037 0.00 0.00 0.00 4.12
581 599 7.183112 TGGTCTTTTAGTCCATATTAAGTCCCA 59.817 37.037 0.00 0.00 28.55 4.37
582 600 7.571025 TGGTCTTTTAGTCCATATTAAGTCCC 58.429 38.462 0.00 0.00 28.55 4.46
601 619 9.448587 AGGGACTTATAGTTGTAATATGGTCTT 57.551 33.333 0.00 0.00 27.25 3.01
612 630 9.145442 GAAGGACTTATAGGGACTTATAGTTGT 57.855 37.037 0.00 0.00 41.75 3.32
613 631 8.586744 GGAAGGACTTATAGGGACTTATAGTTG 58.413 40.741 0.00 0.00 41.75 3.16
614 632 8.521301 AGGAAGGACTTATAGGGACTTATAGTT 58.479 37.037 0.00 0.00 41.75 2.24
615 633 8.071235 AGGAAGGACTTATAGGGACTTATAGT 57.929 38.462 0.00 0.00 41.75 2.12
616 634 8.808092 CAAGGAAGGACTTATAGGGACTTATAG 58.192 40.741 0.00 0.00 41.75 1.31
617 635 8.517047 TCAAGGAAGGACTTATAGGGACTTATA 58.483 37.037 0.00 0.00 41.75 0.98
618 636 7.371043 TCAAGGAAGGACTTATAGGGACTTAT 58.629 38.462 0.00 0.00 41.75 1.73
619 637 6.748969 TCAAGGAAGGACTTATAGGGACTTA 58.251 40.000 0.00 0.00 41.75 2.24
620 638 5.600749 TCAAGGAAGGACTTATAGGGACTT 58.399 41.667 0.00 0.00 41.75 3.01
621 639 5.222278 TCAAGGAAGGACTTATAGGGACT 57.778 43.478 0.00 0.00 46.37 3.85
622 640 5.952347 TTCAAGGAAGGACTTATAGGGAC 57.048 43.478 0.00 0.00 0.00 4.46
623 641 6.030082 ACTTTCAAGGAAGGACTTATAGGGA 58.970 40.000 0.00 0.00 0.00 4.20
624 642 6.157123 AGACTTTCAAGGAAGGACTTATAGGG 59.843 42.308 0.00 0.00 0.00 3.53
625 643 7.189079 AGACTTTCAAGGAAGGACTTATAGG 57.811 40.000 0.00 0.00 0.00 2.57
629 647 9.862149 AAAATAAGACTTTCAAGGAAGGACTTA 57.138 29.630 12.46 12.46 38.91 2.24
630 648 8.768501 AAAATAAGACTTTCAAGGAAGGACTT 57.231 30.769 9.70 9.70 37.40 3.01
658 676 8.923270 TGGACTTAAAATGAAGATTTGGAACTT 58.077 29.630 0.00 0.00 31.83 2.66
659 677 8.477419 TGGACTTAAAATGAAGATTTGGAACT 57.523 30.769 0.00 0.00 31.83 3.01
679 697 9.440761 ACCAAATAGAAGAGACTTATATGGACT 57.559 33.333 10.65 0.00 0.00 3.85
688 706 8.049721 CCCATCTAAACCAAATAGAAGAGACTT 58.950 37.037 0.00 0.00 33.37 3.01
689 707 7.403231 TCCCATCTAAACCAAATAGAAGAGACT 59.597 37.037 0.00 0.00 33.37 3.24
690 708 7.496263 GTCCCATCTAAACCAAATAGAAGAGAC 59.504 40.741 0.00 0.00 33.37 3.36
691 709 7.403231 AGTCCCATCTAAACCAAATAGAAGAGA 59.597 37.037 0.00 0.00 33.37 3.10
692 710 7.569240 AGTCCCATCTAAACCAAATAGAAGAG 58.431 38.462 0.00 0.00 33.37 2.85
693 711 7.510675 AGTCCCATCTAAACCAAATAGAAGA 57.489 36.000 0.00 0.00 33.37 2.87
694 712 9.853177 ATAAGTCCCATCTAAACCAAATAGAAG 57.147 33.333 0.00 0.00 33.37 2.85
697 715 9.726438 CCTATAAGTCCCATCTAAACCAAATAG 57.274 37.037 0.00 0.00 0.00 1.73
698 716 8.665906 CCCTATAAGTCCCATCTAAACCAAATA 58.334 37.037 0.00 0.00 0.00 1.40
699 717 7.352522 TCCCTATAAGTCCCATCTAAACCAAAT 59.647 37.037 0.00 0.00 0.00 2.32
700 718 6.679303 TCCCTATAAGTCCCATCTAAACCAAA 59.321 38.462 0.00 0.00 0.00 3.28
701 719 6.100714 GTCCCTATAAGTCCCATCTAAACCAA 59.899 42.308 0.00 0.00 0.00 3.67
702 720 5.605488 GTCCCTATAAGTCCCATCTAAACCA 59.395 44.000 0.00 0.00 0.00 3.67
703 721 5.845065 AGTCCCTATAAGTCCCATCTAAACC 59.155 44.000 0.00 0.00 0.00 3.27
704 722 6.997942 AGTCCCTATAAGTCCCATCTAAAC 57.002 41.667 0.00 0.00 0.00 2.01
705 723 8.401955 AAAAGTCCCTATAAGTCCCATCTAAA 57.598 34.615 0.00 0.00 0.00 1.85
706 724 8.401955 AAAAAGTCCCTATAAGTCCCATCTAA 57.598 34.615 0.00 0.00 0.00 2.10
708 726 6.910259 AAAAAGTCCCTATAAGTCCCATCT 57.090 37.500 0.00 0.00 0.00 2.90
728 746 8.508875 CGAGCATAGGGTTTAAGAACTTAAAAA 58.491 33.333 17.51 7.70 43.89 1.94
729 747 7.879160 TCGAGCATAGGGTTTAAGAACTTAAAA 59.121 33.333 17.51 6.51 43.89 1.52
730 748 7.332678 GTCGAGCATAGGGTTTAAGAACTTAAA 59.667 37.037 13.50 13.50 41.23 1.52
731 749 6.815142 GTCGAGCATAGGGTTTAAGAACTTAA 59.185 38.462 3.31 3.31 36.03 1.85
732 750 6.335777 GTCGAGCATAGGGTTTAAGAACTTA 58.664 40.000 0.00 0.00 36.03 2.24
733 751 5.176592 GTCGAGCATAGGGTTTAAGAACTT 58.823 41.667 0.00 0.00 36.03 2.66
734 752 4.677250 CGTCGAGCATAGGGTTTAAGAACT 60.677 45.833 0.00 0.00 36.03 3.01
735 753 3.550678 CGTCGAGCATAGGGTTTAAGAAC 59.449 47.826 0.00 0.00 34.96 3.01
736 754 3.444742 TCGTCGAGCATAGGGTTTAAGAA 59.555 43.478 0.00 0.00 0.00 2.52
737 755 3.018856 TCGTCGAGCATAGGGTTTAAGA 58.981 45.455 0.00 0.00 0.00 2.10
738 756 3.114065 GTCGTCGAGCATAGGGTTTAAG 58.886 50.000 0.00 0.00 0.00 1.85
739 757 2.756760 AGTCGTCGAGCATAGGGTTTAA 59.243 45.455 0.00 0.00 0.00 1.52
740 758 2.372264 AGTCGTCGAGCATAGGGTTTA 58.628 47.619 0.00 0.00 0.00 2.01
741 759 1.183549 AGTCGTCGAGCATAGGGTTT 58.816 50.000 0.00 0.00 0.00 3.27
742 760 1.183549 AAGTCGTCGAGCATAGGGTT 58.816 50.000 0.00 0.00 0.00 4.11
743 761 2.048444 TAAGTCGTCGAGCATAGGGT 57.952 50.000 0.00 0.00 0.00 4.34
744 762 2.543238 GGTTAAGTCGTCGAGCATAGGG 60.543 54.545 0.00 0.00 0.00 3.53
745 763 2.098607 TGGTTAAGTCGTCGAGCATAGG 59.901 50.000 0.00 0.00 0.00 2.57
746 764 3.181499 ACTGGTTAAGTCGTCGAGCATAG 60.181 47.826 0.00 0.00 31.64 2.23
747 765 2.751259 ACTGGTTAAGTCGTCGAGCATA 59.249 45.455 0.00 0.00 31.64 3.14
748 766 1.544691 ACTGGTTAAGTCGTCGAGCAT 59.455 47.619 0.00 0.00 31.64 3.79
762 780 2.174639 TCAGTCAATGGGTCAACTGGTT 59.825 45.455 0.00 0.00 39.62 3.67
775 793 3.074390 TGGAGGACCAATGTTCAGTCAAT 59.926 43.478 0.00 0.00 43.91 2.57
805 823 0.179150 TGACAGCAACGGCAAAACAC 60.179 50.000 0.00 0.00 44.61 3.32
807 825 0.594796 CCTGACAGCAACGGCAAAAC 60.595 55.000 0.00 0.00 44.61 2.43
869 899 1.385756 TACCGGTCGATGCGGATTGA 61.386 55.000 12.40 2.17 0.00 2.57
884 919 3.609409 GCTTTTTGGAGTTTCAGCTACCG 60.609 47.826 0.00 0.00 0.00 4.02
935 990 4.965814 TGAGCTAGCTAGATTTTGGATGG 58.034 43.478 25.15 0.00 0.00 3.51
963 1026 1.615883 GCCTCGATCTTGAGCTGGATA 59.384 52.381 0.00 0.00 34.56 2.59
1144 1233 0.107703 CGGATGAAGCAGTAGGCCAA 60.108 55.000 5.01 0.00 46.50 4.52
1472 1567 2.222013 ACCCCCGTCTTGTTCTCCC 61.222 63.158 0.00 0.00 0.00 4.30
1670 1773 2.315925 ATCACTAGCCACCAATCGTG 57.684 50.000 0.00 0.00 42.62 4.35
1801 2861 9.449719 AGGTTTGAGTACTCCATAAATTAAGTG 57.550 33.333 20.11 0.00 0.00 3.16
1843 2939 8.344831 TCGAATATAGGATTGAAATGTTTGCAG 58.655 33.333 0.00 0.00 0.00 4.41
1907 3029 8.954350 CAAGATAAACATGATCCTCAGAAGTTT 58.046 33.333 0.00 0.00 35.50 2.66
1908 3030 8.324306 TCAAGATAAACATGATCCTCAGAAGTT 58.676 33.333 0.00 0.00 0.00 2.66
1909 3031 7.855375 TCAAGATAAACATGATCCTCAGAAGT 58.145 34.615 0.00 0.00 0.00 3.01
1910 3032 8.905660 ATCAAGATAAACATGATCCTCAGAAG 57.094 34.615 0.00 0.00 32.46 2.85
1928 3050 8.950210 CGGCCATTTTAGTATGATTATCAAGAT 58.050 33.333 2.24 0.00 0.00 2.40
1929 3051 7.936847 ACGGCCATTTTAGTATGATTATCAAGA 59.063 33.333 2.24 0.00 0.00 3.02
1930 3052 8.099364 ACGGCCATTTTAGTATGATTATCAAG 57.901 34.615 2.24 0.00 0.00 3.02
1931 3053 9.733556 ATACGGCCATTTTAGTATGATTATCAA 57.266 29.630 2.24 0.00 0.00 2.57
1932 3054 9.161629 CATACGGCCATTTTAGTATGATTATCA 57.838 33.333 16.80 0.00 45.38 2.15
1933 3055 8.122952 GCATACGGCCATTTTAGTATGATTATC 58.877 37.037 22.80 7.37 45.38 1.75
1934 3056 7.609918 TGCATACGGCCATTTTAGTATGATTAT 59.390 33.333 22.80 0.00 45.38 1.28
1935 3057 6.937465 TGCATACGGCCATTTTAGTATGATTA 59.063 34.615 22.80 10.35 45.38 1.75
1936 3058 5.767665 TGCATACGGCCATTTTAGTATGATT 59.232 36.000 22.80 0.00 45.38 2.57
1937 3059 5.312895 TGCATACGGCCATTTTAGTATGAT 58.687 37.500 22.80 0.00 45.38 2.45
1938 3060 4.709250 TGCATACGGCCATTTTAGTATGA 58.291 39.130 22.80 10.38 45.38 2.15
1939 3061 5.412594 AGATGCATACGGCCATTTTAGTATG 59.587 40.000 17.22 17.22 45.34 2.39
1940 3062 5.560724 AGATGCATACGGCCATTTTAGTAT 58.439 37.500 2.24 0.00 43.89 2.12
1941 3063 4.968259 AGATGCATACGGCCATTTTAGTA 58.032 39.130 2.24 0.00 43.89 1.82
1942 3064 3.815401 GAGATGCATACGGCCATTTTAGT 59.185 43.478 2.24 0.00 43.89 2.24
1943 3065 4.067896 AGAGATGCATACGGCCATTTTAG 58.932 43.478 2.24 0.00 43.89 1.85
1944 3066 4.085357 AGAGATGCATACGGCCATTTTA 57.915 40.909 2.24 0.00 43.89 1.52
1945 3067 2.936202 AGAGATGCATACGGCCATTTT 58.064 42.857 2.24 0.00 43.89 1.82
1946 3068 2.645838 AGAGATGCATACGGCCATTT 57.354 45.000 2.24 0.00 43.89 2.32
1947 3069 2.634940 AGTAGAGATGCATACGGCCATT 59.365 45.455 2.24 0.00 43.89 3.16
1948 3070 2.251818 AGTAGAGATGCATACGGCCAT 58.748 47.619 2.24 0.00 43.89 4.40
1949 3071 1.704641 AGTAGAGATGCATACGGCCA 58.295 50.000 2.24 0.00 43.89 5.36
1950 3072 2.802816 CAAAGTAGAGATGCATACGGCC 59.197 50.000 0.00 0.00 43.89 6.13
1951 3073 3.246226 CACAAAGTAGAGATGCATACGGC 59.754 47.826 0.00 0.00 45.13 5.68
1952 3074 3.246226 GCACAAAGTAGAGATGCATACGG 59.754 47.826 0.00 0.00 36.30 4.02
1953 3075 3.865164 TGCACAAAGTAGAGATGCATACG 59.135 43.478 0.00 0.00 41.18 3.06
1954 3076 5.111989 TCTGCACAAAGTAGAGATGCATAC 58.888 41.667 0.00 0.00 44.73 2.39
1955 3077 5.343307 TCTGCACAAAGTAGAGATGCATA 57.657 39.130 0.00 0.00 44.73 3.14
1956 3078 4.212143 TCTGCACAAAGTAGAGATGCAT 57.788 40.909 0.00 0.00 44.73 3.96
1957 3079 3.683365 TCTGCACAAAGTAGAGATGCA 57.317 42.857 0.00 0.00 43.70 3.96
1963 3085 1.272490 CCGACCTCTGCACAAAGTAGA 59.728 52.381 0.00 0.00 36.56 2.59
1964 3086 1.673033 CCCGACCTCTGCACAAAGTAG 60.673 57.143 0.00 0.00 0.00 2.57
1965 3087 0.320374 CCCGACCTCTGCACAAAGTA 59.680 55.000 0.00 0.00 0.00 2.24
1966 3088 1.071471 CCCGACCTCTGCACAAAGT 59.929 57.895 0.00 0.00 0.00 2.66
1967 3089 1.672356 CCCCGACCTCTGCACAAAG 60.672 63.158 0.00 0.00 0.00 2.77
1968 3090 2.429930 CCCCGACCTCTGCACAAA 59.570 61.111 0.00 0.00 0.00 2.83
1969 3091 3.636231 CCCCCGACCTCTGCACAA 61.636 66.667 0.00 0.00 0.00 3.33
1970 3092 4.631740 TCCCCCGACCTCTGCACA 62.632 66.667 0.00 0.00 0.00 4.57
1971 3093 3.775654 CTCCCCCGACCTCTGCAC 61.776 72.222 0.00 0.00 0.00 4.57
1972 3094 4.316823 ACTCCCCCGACCTCTGCA 62.317 66.667 0.00 0.00 0.00 4.41
1973 3095 3.775654 CACTCCCCCGACCTCTGC 61.776 72.222 0.00 0.00 0.00 4.26
1974 3096 1.192146 TTTCACTCCCCCGACCTCTG 61.192 60.000 0.00 0.00 0.00 3.35
1975 3097 0.252742 ATTTCACTCCCCCGACCTCT 60.253 55.000 0.00 0.00 0.00 3.69
1976 3098 0.618981 AATTTCACTCCCCCGACCTC 59.381 55.000 0.00 0.00 0.00 3.85
1977 3099 0.618981 GAATTTCACTCCCCCGACCT 59.381 55.000 0.00 0.00 0.00 3.85
1978 3100 0.618981 AGAATTTCACTCCCCCGACC 59.381 55.000 0.00 0.00 0.00 4.79
1979 3101 1.407025 GGAGAATTTCACTCCCCCGAC 60.407 57.143 0.00 0.00 45.64 4.79
1980 3102 0.909623 GGAGAATTTCACTCCCCCGA 59.090 55.000 0.00 0.00 45.64 5.14
1981 3103 3.478540 GGAGAATTTCACTCCCCCG 57.521 57.895 0.00 0.00 45.64 5.73
1986 3108 5.745312 AAAAATGGGGGAGAATTTCACTC 57.255 39.130 0.00 0.00 0.00 3.51
1987 3109 7.311234 CCATTAAAAATGGGGGAGAATTTCACT 60.311 37.037 10.29 0.00 35.58 3.41
1988 3110 6.823182 CCATTAAAAATGGGGGAGAATTTCAC 59.177 38.462 10.29 0.00 35.58 3.18
1989 3111 6.503570 ACCATTAAAAATGGGGGAGAATTTCA 59.496 34.615 19.92 0.00 43.32 2.69
1990 3112 6.823182 CACCATTAAAAATGGGGGAGAATTTC 59.177 38.462 19.92 0.00 43.32 2.17
1991 3113 6.274436 ACACCATTAAAAATGGGGGAGAATTT 59.726 34.615 21.71 0.00 46.66 1.82
1992 3114 5.790096 ACACCATTAAAAATGGGGGAGAATT 59.210 36.000 21.71 0.64 46.66 2.17
1993 3115 5.349690 ACACCATTAAAAATGGGGGAGAAT 58.650 37.500 21.71 1.29 46.66 2.40
1994 3116 4.757692 ACACCATTAAAAATGGGGGAGAA 58.242 39.130 21.71 0.00 46.66 2.87
1995 3117 4.202727 TGACACCATTAAAAATGGGGGAGA 60.203 41.667 21.71 5.54 46.66 3.71
1996 3118 4.093011 TGACACCATTAAAAATGGGGGAG 58.907 43.478 21.71 11.56 46.66 4.30
1997 3119 4.093011 CTGACACCATTAAAAATGGGGGA 58.907 43.478 21.71 9.47 46.66 4.81
1998 3120 3.197549 CCTGACACCATTAAAAATGGGGG 59.802 47.826 21.71 15.27 46.66 5.40
2000 3122 3.260380 TGCCTGACACCATTAAAAATGGG 59.740 43.478 19.92 12.44 43.32 4.00
2001 3123 4.497300 CTGCCTGACACCATTAAAAATGG 58.503 43.478 15.50 15.50 44.54 3.16
2002 3124 3.928375 GCTGCCTGACACCATTAAAAATG 59.072 43.478 0.00 0.00 0.00 2.32
2003 3125 3.834231 AGCTGCCTGACACCATTAAAAAT 59.166 39.130 0.00 0.00 0.00 1.82
2004 3126 3.230134 AGCTGCCTGACACCATTAAAAA 58.770 40.909 0.00 0.00 0.00 1.94
2005 3127 2.875296 AGCTGCCTGACACCATTAAAA 58.125 42.857 0.00 0.00 0.00 1.52
2006 3128 2.584835 AGCTGCCTGACACCATTAAA 57.415 45.000 0.00 0.00 0.00 1.52
2007 3129 2.436417 GAAGCTGCCTGACACCATTAA 58.564 47.619 0.00 0.00 0.00 1.40
2008 3130 1.675714 CGAAGCTGCCTGACACCATTA 60.676 52.381 0.00 0.00 0.00 1.90
2009 3131 0.957395 CGAAGCTGCCTGACACCATT 60.957 55.000 0.00 0.00 0.00 3.16
2010 3132 1.376424 CGAAGCTGCCTGACACCAT 60.376 57.895 0.00 0.00 0.00 3.55
2011 3133 2.031012 CGAAGCTGCCTGACACCA 59.969 61.111 0.00 0.00 0.00 4.17
2012 3134 2.743928 CCGAAGCTGCCTGACACC 60.744 66.667 0.00 0.00 0.00 4.16
2013 3135 3.426568 GCCGAAGCTGCCTGACAC 61.427 66.667 0.00 0.00 35.50 3.67
2023 3145 0.457337 CATGCCAGAAAAGCCGAAGC 60.457 55.000 0.00 0.00 40.32 3.86
2024 3146 0.457337 GCATGCCAGAAAAGCCGAAG 60.457 55.000 6.36 0.00 0.00 3.79
2025 3147 0.895100 AGCATGCCAGAAAAGCCGAA 60.895 50.000 15.66 0.00 0.00 4.30
2026 3148 1.303561 AGCATGCCAGAAAAGCCGA 60.304 52.632 15.66 0.00 0.00 5.54
2027 3149 1.138247 GAGCATGCCAGAAAAGCCG 59.862 57.895 15.66 0.00 0.00 5.52
2028 3150 1.138247 CGAGCATGCCAGAAAAGCC 59.862 57.895 15.66 0.00 0.00 4.35
2029 3151 1.515736 GCGAGCATGCCAGAAAAGC 60.516 57.895 15.66 5.98 0.00 3.51
2030 3152 4.779819 GCGAGCATGCCAGAAAAG 57.220 55.556 15.66 0.00 0.00 2.27
2082 3204 4.119363 GGGGGTTAGGGTTCCGCC 62.119 72.222 1.80 1.80 46.54 6.13
2083 3205 3.332385 TGGGGGTTAGGGTTCCGC 61.332 66.667 0.00 0.00 36.19 5.54
2084 3206 2.672908 GTGGGGGTTAGGGTTCCG 59.327 66.667 0.00 0.00 0.00 4.30
2085 3207 2.975265 CGGTGGGGGTTAGGGTTCC 61.975 68.421 0.00 0.00 0.00 3.62
2086 3208 2.672908 CGGTGGGGGTTAGGGTTC 59.327 66.667 0.00 0.00 0.00 3.62
2087 3209 3.654143 GCGGTGGGGGTTAGGGTT 61.654 66.667 0.00 0.00 0.00 4.11
2107 3229 4.410400 GAGGTTGGTGGAGCCCGG 62.410 72.222 0.00 0.00 36.04 5.73
2108 3230 2.804828 GAAGAGGTTGGTGGAGCCCG 62.805 65.000 0.00 0.00 36.04 6.13
2109 3231 1.002011 GAAGAGGTTGGTGGAGCCC 60.002 63.158 0.00 0.00 36.04 5.19
2110 3232 1.002011 GGAAGAGGTTGGTGGAGCC 60.002 63.158 0.00 0.00 37.90 4.70
2111 3233 0.402121 AAGGAAGAGGTTGGTGGAGC 59.598 55.000 0.00 0.00 0.00 4.70
2112 3234 1.003696 GGAAGGAAGAGGTTGGTGGAG 59.996 57.143 0.00 0.00 0.00 3.86
2113 3235 1.064825 GGAAGGAAGAGGTTGGTGGA 58.935 55.000 0.00 0.00 0.00 4.02
2114 3236 0.038310 GGGAAGGAAGAGGTTGGTGG 59.962 60.000 0.00 0.00 0.00 4.61
2115 3237 1.068121 AGGGAAGGAAGAGGTTGGTG 58.932 55.000 0.00 0.00 0.00 4.17
2116 3238 1.705745 GAAGGGAAGGAAGAGGTTGGT 59.294 52.381 0.00 0.00 0.00 3.67
2117 3239 1.339151 CGAAGGGAAGGAAGAGGTTGG 60.339 57.143 0.00 0.00 0.00 3.77
2118 3240 1.946283 GCGAAGGGAAGGAAGAGGTTG 60.946 57.143 0.00 0.00 0.00 3.77
2119 3241 0.325272 GCGAAGGGAAGGAAGAGGTT 59.675 55.000 0.00 0.00 0.00 3.50
2120 3242 1.554583 GGCGAAGGGAAGGAAGAGGT 61.555 60.000 0.00 0.00 0.00 3.85
2121 3243 1.222113 GGCGAAGGGAAGGAAGAGG 59.778 63.158 0.00 0.00 0.00 3.69
2122 3244 0.391793 GTGGCGAAGGGAAGGAAGAG 60.392 60.000 0.00 0.00 0.00 2.85
2123 3245 1.677552 GTGGCGAAGGGAAGGAAGA 59.322 57.895 0.00 0.00 0.00 2.87
2124 3246 1.377333 GGTGGCGAAGGGAAGGAAG 60.377 63.158 0.00 0.00 0.00 3.46
2125 3247 1.497309 ATGGTGGCGAAGGGAAGGAA 61.497 55.000 0.00 0.00 0.00 3.36
2126 3248 1.497309 AATGGTGGCGAAGGGAAGGA 61.497 55.000 0.00 0.00 0.00 3.36
2127 3249 1.000896 AATGGTGGCGAAGGGAAGG 60.001 57.895 0.00 0.00 0.00 3.46
2128 3250 1.315257 CCAATGGTGGCGAAGGGAAG 61.315 60.000 0.00 0.00 38.35 3.46
2129 3251 1.304052 CCAATGGTGGCGAAGGGAA 60.304 57.895 0.00 0.00 38.35 3.97
2130 3252 2.196997 CTCCAATGGTGGCGAAGGGA 62.197 60.000 0.00 0.00 45.54 4.20
2131 3253 1.750399 CTCCAATGGTGGCGAAGGG 60.750 63.158 0.00 0.00 45.54 3.95
2132 3254 1.750399 CCTCCAATGGTGGCGAAGG 60.750 63.158 7.52 0.00 45.54 3.46
2133 3255 0.745845 CTCCTCCAATGGTGGCGAAG 60.746 60.000 15.19 4.53 45.54 3.79
2134 3256 1.299648 CTCCTCCAATGGTGGCGAA 59.700 57.895 15.19 0.00 45.54 4.70
2135 3257 2.669133 CCTCCTCCAATGGTGGCGA 61.669 63.158 15.19 0.00 45.54 5.54
2136 3258 2.124570 CCTCCTCCAATGGTGGCG 60.125 66.667 15.19 9.34 45.54 5.69
2137 3259 1.077429 GACCTCCTCCAATGGTGGC 60.077 63.158 15.19 0.00 45.54 5.01
2139 3261 1.450312 GCGACCTCCTCCAATGGTG 60.450 63.158 0.00 0.00 33.74 4.17
2140 3262 2.670148 GGCGACCTCCTCCAATGGT 61.670 63.158 0.00 0.00 36.70 3.55
2141 3263 2.190578 GGCGACCTCCTCCAATGG 59.809 66.667 0.00 0.00 0.00 3.16
2142 3264 2.202932 CGGCGACCTCCTCCAATG 60.203 66.667 0.00 0.00 0.00 2.82
2143 3265 3.470888 CCGGCGACCTCCTCCAAT 61.471 66.667 9.30 0.00 0.00 3.16
2287 3410 1.134367 CGTCACAGATCCGCCTTAGAA 59.866 52.381 0.00 0.00 0.00 2.10
2290 3413 1.813859 CCGTCACAGATCCGCCTTA 59.186 57.895 0.00 0.00 0.00 2.69
2515 3638 0.038159 CTCGACCGCCTTCAAAGACT 60.038 55.000 0.00 0.00 0.00 3.24
2517 3640 0.038526 GTCTCGACCGCCTTCAAAGA 60.039 55.000 0.00 0.00 0.00 2.52
2570 3693 0.037590 CCAGGTTTTCACCCGGATCA 59.962 55.000 0.73 0.00 42.94 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.