Multiple sequence alignment - TraesCS2A01G473400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G473400 chr2A 100.000 3085 0 0 1 3085 714858492 714855408 0.000000e+00 5698.0
1 TraesCS2A01G473400 chr2A 90.798 163 15 0 2721 2883 714855609 714855447 5.180000e-53 219.0
2 TraesCS2A01G473400 chr2A 90.798 163 15 0 2884 3046 714855772 714855610 5.180000e-53 219.0
3 TraesCS2A01G473400 chr2A 76.946 334 51 12 1016 1343 714785557 714785244 1.900000e-37 167.0
4 TraesCS2A01G473400 chr2A 85.870 92 11 2 7 96 564978919 564978828 2.530000e-16 97.1
5 TraesCS2A01G473400 chr1B 92.129 775 46 7 1 764 334677160 334677930 0.000000e+00 1079.0
6 TraesCS2A01G473400 chr1B 88.282 751 70 7 29 765 671507401 671508147 0.000000e+00 883.0
7 TraesCS2A01G473400 chr3D 91.214 774 54 6 1 764 607539194 607538425 0.000000e+00 1040.0
8 TraesCS2A01G473400 chr3D 90.470 766 61 7 1 757 456648863 456649625 0.000000e+00 1000.0
9 TraesCS2A01G473400 chr5D 91.203 773 55 5 1 763 396441074 396441843 0.000000e+00 1038.0
10 TraesCS2A01G473400 chr5D 88.616 773 73 6 1 763 543814135 543813368 0.000000e+00 926.0
11 TraesCS2A01G473400 chr4D 90.897 769 58 4 1 759 107699652 107698886 0.000000e+00 1022.0
12 TraesCS2A01G473400 chr2B 94.207 656 32 4 1419 2068 693095802 693095147 0.000000e+00 996.0
13 TraesCS2A01G473400 chr2B 95.032 624 20 3 2078 2699 693094696 693094082 0.000000e+00 970.0
14 TraesCS2A01G473400 chr2B 91.395 674 24 15 761 1422 693096503 693095852 0.000000e+00 893.0
15 TraesCS2A01G473400 chr2B 91.049 391 28 3 2700 3085 693085605 693085217 3.530000e-144 521.0
16 TraesCS2A01G473400 chr2B 94.643 168 8 1 2884 3051 693085586 693085420 3.050000e-65 259.0
17 TraesCS2A01G473400 chr2B 81.224 245 29 8 1016 1257 693072973 693072743 6.800000e-42 182.0
18 TraesCS2A01G473400 chr4B 89.844 768 65 5 7 764 142673247 142674011 0.000000e+00 974.0
19 TraesCS2A01G473400 chr7D 88.960 779 68 11 1 763 13317649 13318425 0.000000e+00 946.0
20 TraesCS2A01G473400 chr7D 85.204 196 29 0 2888 3083 574027411 574027606 5.220000e-48 202.0
21 TraesCS2A01G473400 chr3B 88.918 767 76 7 1 764 147559854 147560614 0.000000e+00 937.0
22 TraesCS2A01G473400 chr1A 88.381 766 81 8 1 763 516441540 516442300 0.000000e+00 915.0
23 TraesCS2A01G473400 chr5A 87.843 765 82 9 3 764 9383914 9384670 0.000000e+00 887.0
24 TraesCS2A01G473400 chr5A 81.897 116 20 1 2928 3042 514161690 514161575 2.530000e-16 97.1
25 TraesCS2A01G473400 chr7B 96.774 31 1 0 1799 1829 640945996 640945966 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G473400 chr2A 714855408 714858492 3084 True 2045.333333 5698 93.865333 1 3085 3 chr2A.!!$R3 3084
1 TraesCS2A01G473400 chr1B 334677160 334677930 770 False 1079.000000 1079 92.129000 1 764 1 chr1B.!!$F1 763
2 TraesCS2A01G473400 chr1B 671507401 671508147 746 False 883.000000 883 88.282000 29 765 1 chr1B.!!$F2 736
3 TraesCS2A01G473400 chr3D 607538425 607539194 769 True 1040.000000 1040 91.214000 1 764 1 chr3D.!!$R1 763
4 TraesCS2A01G473400 chr3D 456648863 456649625 762 False 1000.000000 1000 90.470000 1 757 1 chr3D.!!$F1 756
5 TraesCS2A01G473400 chr5D 396441074 396441843 769 False 1038.000000 1038 91.203000 1 763 1 chr5D.!!$F1 762
6 TraesCS2A01G473400 chr5D 543813368 543814135 767 True 926.000000 926 88.616000 1 763 1 chr5D.!!$R1 762
7 TraesCS2A01G473400 chr4D 107698886 107699652 766 True 1022.000000 1022 90.897000 1 759 1 chr4D.!!$R1 758
8 TraesCS2A01G473400 chr2B 693094082 693096503 2421 True 953.000000 996 93.544667 761 2699 3 chr2B.!!$R3 1938
9 TraesCS2A01G473400 chr4B 142673247 142674011 764 False 974.000000 974 89.844000 7 764 1 chr4B.!!$F1 757
10 TraesCS2A01G473400 chr7D 13317649 13318425 776 False 946.000000 946 88.960000 1 763 1 chr7D.!!$F1 762
11 TraesCS2A01G473400 chr3B 147559854 147560614 760 False 937.000000 937 88.918000 1 764 1 chr3B.!!$F1 763
12 TraesCS2A01G473400 chr1A 516441540 516442300 760 False 915.000000 915 88.381000 1 763 1 chr1A.!!$F1 762
13 TraesCS2A01G473400 chr5A 9383914 9384670 756 False 887.000000 887 87.843000 3 764 1 chr5A.!!$F1 761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
389 402 0.105039 GCATAAGGCTACTCCGCAGT 59.895 55.0 0.00 0.0 40.77 4.40 F
1157 1201 0.041839 GACCAATTATGCGCTGCTCG 60.042 55.0 9.73 0.0 42.12 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1943 2040 0.110486 CAATGGTCCCTATTCCCGGG 59.890 60.0 16.85 16.85 43.38 5.73 R
2984 3530 0.107459 GTCAGGAATCACTGGAGCCC 60.107 60.0 0.00 0.00 38.98 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 0.670162 CCTCCAACCAACACTTGCTG 59.330 55.000 0.00 0.00 0.00 4.41
212 225 1.596203 CGCCATCGTCTGCCATGAT 60.596 57.895 0.00 0.00 0.00 2.45
213 226 1.563435 CGCCATCGTCTGCCATGATC 61.563 60.000 0.00 0.00 0.00 2.92
214 227 0.533531 GCCATCGTCTGCCATGATCA 60.534 55.000 0.00 0.00 0.00 2.92
217 230 1.126488 ATCGTCTGCCATGATCAGGT 58.874 50.000 6.62 0.00 32.63 4.00
276 289 4.243008 TCGCGGTTGGCTGGAACA 62.243 61.111 6.13 0.00 40.44 3.18
382 395 1.740285 CGGTCGGCATAAGGCTACT 59.260 57.895 0.00 0.00 44.01 2.57
387 400 1.445942 GGCATAAGGCTACTCCGCA 59.554 57.895 0.00 0.00 44.01 5.69
389 402 0.105039 GCATAAGGCTACTCCGCAGT 59.895 55.000 0.00 0.00 40.77 4.40
403 416 1.070445 GCAGTGGATCTGATCGGGG 59.930 63.158 11.28 2.89 46.27 5.73
404 417 1.070445 CAGTGGATCTGATCGGGGC 59.930 63.158 11.28 0.00 46.27 5.80
463 478 0.479815 ATCAGGTACCCCGTCGGATA 59.520 55.000 14.39 1.59 35.12 2.59
472 487 3.592814 CGTCGGATAGGGCGCTGA 61.593 66.667 14.51 0.00 0.00 4.26
780 812 5.360714 GGGTGAGGAATAATGAAAGCAATCA 59.639 40.000 0.00 0.00 0.00 2.57
805 837 6.642707 ACTAATCTAAATCTCCGAGGAGTG 57.357 41.667 17.75 5.97 42.49 3.51
811 843 0.626382 ATCTCCGAGGAGTGTCAGGA 59.374 55.000 17.75 0.00 42.49 3.86
826 858 3.202151 TGTCAGGAAGTTGGAGAAGGTTT 59.798 43.478 0.00 0.00 0.00 3.27
843 875 1.901654 TTTACGGCCGGCACACCTAT 61.902 55.000 31.76 7.29 0.00 2.57
846 878 2.203070 GGCCGGCACACCTATCTG 60.203 66.667 30.85 0.00 0.00 2.90
851 883 0.462047 CGGCACACCTATCTGGAACC 60.462 60.000 0.00 0.00 39.71 3.62
853 885 1.212935 GGCACACCTATCTGGAACCAT 59.787 52.381 0.00 0.00 39.71 3.55
859 891 2.644798 ACCTATCTGGAACCATATGCCC 59.355 50.000 0.00 0.00 39.71 5.36
860 892 2.355108 CCTATCTGGAACCATATGCCCG 60.355 54.545 0.00 0.00 38.35 6.13
861 893 1.434188 ATCTGGAACCATATGCCCGA 58.566 50.000 0.00 0.00 0.00 5.14
862 894 0.468226 TCTGGAACCATATGCCCGAC 59.532 55.000 0.00 0.00 0.00 4.79
863 895 0.535102 CTGGAACCATATGCCCGACC 60.535 60.000 0.00 0.00 0.00 4.79
884 916 5.481105 ACCGAATCGTAGTGGTATTTGAAA 58.519 37.500 0.82 0.00 31.60 2.69
894 926 8.943002 CGTAGTGGTATTTGAAAAGGAAACTAT 58.057 33.333 0.00 0.00 42.68 2.12
908 940 9.715121 AAAAGGAAACTATTACGTGTATCAGAA 57.285 29.630 0.00 0.00 42.68 3.02
914 946 9.715121 AAACTATTACGTGTATCAGAAAAGGAA 57.285 29.630 0.00 0.00 0.00 3.36
915 947 9.886132 AACTATTACGTGTATCAGAAAAGGAAT 57.114 29.630 0.00 0.00 0.00 3.01
916 948 9.530633 ACTATTACGTGTATCAGAAAAGGAATC 57.469 33.333 0.00 0.00 0.00 2.52
917 949 6.880822 TTACGTGTATCAGAAAAGGAATCG 57.119 37.500 0.00 0.00 0.00 3.34
918 950 3.617263 ACGTGTATCAGAAAAGGAATCGC 59.383 43.478 0.00 0.00 0.00 4.58
919 951 3.616821 CGTGTATCAGAAAAGGAATCGCA 59.383 43.478 0.00 0.00 0.00 5.10
920 952 4.092821 CGTGTATCAGAAAAGGAATCGCAA 59.907 41.667 0.00 0.00 0.00 4.85
921 953 5.220662 CGTGTATCAGAAAAGGAATCGCAAT 60.221 40.000 0.00 0.00 0.00 3.56
922 954 5.967674 GTGTATCAGAAAAGGAATCGCAATG 59.032 40.000 0.00 0.00 0.00 2.82
923 955 5.879777 TGTATCAGAAAAGGAATCGCAATGA 59.120 36.000 0.00 0.00 0.00 2.57
924 956 6.543465 TGTATCAGAAAAGGAATCGCAATGAT 59.457 34.615 0.00 0.00 39.67 2.45
945 977 5.405269 TGATTGCTGGAATCATTACGATACG 59.595 40.000 18.91 0.00 44.65 3.06
981 1013 5.607477 TCCTTGTATAAATTCCGTGGCTAG 58.393 41.667 0.00 0.00 0.00 3.42
983 1015 4.682778 TGTATAAATTCCGTGGCTAGCT 57.317 40.909 15.72 0.00 0.00 3.32
1033 1077 2.827604 CGTTCTCGTTGTCATGGCT 58.172 52.632 0.00 0.00 0.00 4.75
1157 1201 0.041839 GACCAATTATGCGCTGCTCG 60.042 55.000 9.73 0.00 42.12 5.03
1248 1292 1.880819 TTCTACCCGGACGGAAGCAC 61.881 60.000 13.13 0.00 37.50 4.40
1259 1303 1.342174 ACGGAAGCACGAAGGACTTTA 59.658 47.619 2.50 0.00 37.61 1.85
1284 1328 1.003331 CAACGCGTCAGCCTTTTTGTA 60.003 47.619 14.44 0.00 41.18 2.41
1287 1331 3.068560 ACGCGTCAGCCTTTTTGTATTA 58.931 40.909 5.58 0.00 41.18 0.98
1308 1352 0.824759 CTCAGTAAGGGGAAGGACGG 59.175 60.000 0.00 0.00 0.00 4.79
1496 1593 0.448990 TCATCGTAGTTCCACCGTCG 59.551 55.000 0.00 0.00 0.00 5.12
1515 1612 3.866379 AAGCTGCCCGGCAACATCA 62.866 57.895 14.45 0.00 38.41 3.07
1689 1786 1.740296 GTTGTCGACATGGACCCGG 60.740 63.158 20.80 0.00 36.07 5.73
1838 1935 3.390967 TCAAGGTGATGTGTGAAGAGGAA 59.609 43.478 0.00 0.00 0.00 3.36
1844 1941 2.910688 TGTGTGAAGAGGAACTGTCC 57.089 50.000 0.00 0.00 41.55 4.02
1862 1959 1.879380 TCCAAAAGCATCAACGTCCAG 59.121 47.619 0.00 0.00 0.00 3.86
1879 1976 1.467543 CCAGACCGTCACGAGTACATG 60.468 57.143 0.00 0.00 0.00 3.21
1889 1986 1.376683 GAGTACATGGGCGGTTGCA 60.377 57.895 0.00 0.00 45.35 4.08
1940 2037 4.156455 TGCTTGTGAGGAGTTTCTTTCT 57.844 40.909 0.00 0.00 0.00 2.52
1942 2039 3.879892 GCTTGTGAGGAGTTTCTTTCTGT 59.120 43.478 0.00 0.00 0.00 3.41
1943 2040 4.024472 GCTTGTGAGGAGTTTCTTTCTGTC 60.024 45.833 0.00 0.00 0.00 3.51
1964 2061 1.202770 CCGGGAATAGGGACCATTGTC 60.203 57.143 0.00 0.00 40.98 3.18
1989 2086 0.382873 AAGAAACGGGTTCAAACGCC 59.617 50.000 8.72 0.00 38.86 5.68
1991 2088 0.040692 GAAACGGGTTCAAACGCCTC 60.041 55.000 0.00 0.00 38.50 4.70
2007 2104 0.529378 CCTCATGGCAAAGCTGGAAC 59.471 55.000 0.00 0.00 0.00 3.62
2008 2105 1.542492 CTCATGGCAAAGCTGGAACT 58.458 50.000 0.00 0.00 0.00 3.01
2012 2112 2.278330 GGCAAAGCTGGAACTGGGG 61.278 63.158 0.00 0.00 0.00 4.96
2013 2113 2.278330 GCAAAGCTGGAACTGGGGG 61.278 63.158 0.00 0.00 0.00 5.40
2015 2115 0.895559 CAAAGCTGGAACTGGGGGAC 60.896 60.000 0.00 0.00 0.00 4.46
2029 2129 2.107953 GGACGAGGAGGCATCTGC 59.892 66.667 0.00 0.00 41.14 4.26
2110 2654 6.768381 ACGATTTTTGGAGGATTAGGATCTTC 59.232 38.462 0.00 0.00 37.59 2.87
2170 2716 8.354711 AGATTGAAATCCTTAGGAACTTTTCC 57.645 34.615 17.94 7.50 42.05 3.13
2232 2778 1.477105 GACTCAAACCGCTTTGTTGC 58.523 50.000 3.26 0.00 38.38 4.17
2303 2849 1.168714 GGGCAAGAGAACATGACACC 58.831 55.000 0.00 0.00 0.00 4.16
2377 2923 1.827344 GGCCCTTACACGGTACTAACT 59.173 52.381 0.00 0.00 0.00 2.24
2477 3023 3.537580 ACAGAAAAGTTTACGCAGTCCA 58.462 40.909 0.00 0.00 43.93 4.02
2555 3101 8.332464 GCTAAATTATGAGCACGTACATTTGTA 58.668 33.333 7.22 0.00 38.62 2.41
2560 3106 4.765273 TGAGCACGTACATTTGTATCCAT 58.235 39.130 0.00 0.00 32.54 3.41
2623 3169 5.438761 AAAGAACATAACTTCAGGCACAC 57.561 39.130 0.00 0.00 0.00 3.82
2627 3173 4.292186 ACATAACTTCAGGCACACATCT 57.708 40.909 0.00 0.00 0.00 2.90
2666 3212 6.601332 TCTCCTTAATAACCATCACATTCCC 58.399 40.000 0.00 0.00 0.00 3.97
2699 3245 5.503927 TCCGTCCTGGATACTACATATACC 58.496 45.833 0.00 0.00 43.74 2.73
2700 3246 5.014438 TCCGTCCTGGATACTACATATACCA 59.986 44.000 0.00 0.00 43.74 3.25
2701 3247 5.125097 CCGTCCTGGATACTACATATACCAC 59.875 48.000 0.00 0.00 42.00 4.16
2702 3248 5.944599 CGTCCTGGATACTACATATACCACT 59.055 44.000 0.00 0.00 37.61 4.00
2703 3249 6.093771 CGTCCTGGATACTACATATACCACTC 59.906 46.154 0.00 0.00 37.61 3.51
2704 3250 6.377712 GTCCTGGATACTACATATACCACTCC 59.622 46.154 0.00 0.00 37.61 3.85
2705 3251 6.277283 TCCTGGATACTACATATACCACTCCT 59.723 42.308 0.00 0.00 37.61 3.69
2706 3252 7.463295 TCCTGGATACTACATATACCACTCCTA 59.537 40.741 0.00 0.00 37.61 2.94
2707 3253 8.114102 CCTGGATACTACATATACCACTCCTAA 58.886 40.741 0.00 0.00 37.61 2.69
2708 3254 9.179909 CTGGATACTACATATACCACTCCTAAG 57.820 40.741 0.00 0.00 37.61 2.18
2709 3255 7.614583 TGGATACTACATATACCACTCCTAAGC 59.385 40.741 0.00 0.00 37.61 3.09
2710 3256 7.614583 GGATACTACATATACCACTCCTAAGCA 59.385 40.741 0.00 0.00 0.00 3.91
2711 3257 8.951614 ATACTACATATACCACTCCTAAGCAA 57.048 34.615 0.00 0.00 0.00 3.91
2712 3258 7.857404 ACTACATATACCACTCCTAAGCAAT 57.143 36.000 0.00 0.00 0.00 3.56
2713 3259 7.897864 ACTACATATACCACTCCTAAGCAATC 58.102 38.462 0.00 0.00 0.00 2.67
2714 3260 6.115448 ACATATACCACTCCTAAGCAATCC 57.885 41.667 0.00 0.00 0.00 3.01
2715 3261 3.753294 ATACCACTCCTAAGCAATCCG 57.247 47.619 0.00 0.00 0.00 4.18
2716 3262 0.541863 ACCACTCCTAAGCAATCCGG 59.458 55.000 0.00 0.00 0.00 5.14
2717 3263 0.830648 CCACTCCTAAGCAATCCGGA 59.169 55.000 6.61 6.61 0.00 5.14
2718 3264 1.202580 CCACTCCTAAGCAATCCGGAG 60.203 57.143 11.34 0.00 46.59 4.63
2722 3268 4.608948 CTCCTAAGCAATCCGGAGTAAT 57.391 45.455 11.34 0.00 38.54 1.89
2723 3269 4.561105 CTCCTAAGCAATCCGGAGTAATC 58.439 47.826 11.34 0.00 38.54 1.75
2724 3270 3.323979 TCCTAAGCAATCCGGAGTAATCC 59.676 47.826 11.34 0.00 0.00 3.01
2725 3271 3.325135 CCTAAGCAATCCGGAGTAATCCT 59.675 47.826 11.34 0.00 0.00 3.24
2726 3272 4.527038 CCTAAGCAATCCGGAGTAATCCTA 59.473 45.833 11.34 0.00 0.00 2.94
2727 3273 5.187967 CCTAAGCAATCCGGAGTAATCCTAT 59.812 44.000 11.34 0.00 0.00 2.57
2728 3274 6.380274 CCTAAGCAATCCGGAGTAATCCTATA 59.620 42.308 11.34 0.00 0.00 1.31
2729 3275 5.923733 AGCAATCCGGAGTAATCCTATAG 57.076 43.478 11.34 0.00 0.00 1.31
2730 3276 5.334421 AGCAATCCGGAGTAATCCTATAGT 58.666 41.667 11.34 0.00 0.00 2.12
2731 3277 5.780793 AGCAATCCGGAGTAATCCTATAGTT 59.219 40.000 11.34 0.00 0.00 2.24
2732 3278 6.952358 AGCAATCCGGAGTAATCCTATAGTTA 59.048 38.462 11.34 0.00 0.00 2.24
2733 3279 7.122948 AGCAATCCGGAGTAATCCTATAGTTAG 59.877 40.741 11.34 0.00 0.00 2.34
2734 3280 7.122353 GCAATCCGGAGTAATCCTATAGTTAGA 59.878 40.741 11.34 0.00 0.00 2.10
2735 3281 9.191479 CAATCCGGAGTAATCCTATAGTTAGAT 57.809 37.037 11.34 0.00 0.00 1.98
2736 3282 9.771140 AATCCGGAGTAATCCTATAGTTAGATT 57.229 33.333 11.34 3.83 0.00 2.40
2737 3283 8.804912 TCCGGAGTAATCCTATAGTTAGATTC 57.195 38.462 7.75 1.31 0.00 2.52
2738 3284 7.833183 TCCGGAGTAATCCTATAGTTAGATTCC 59.167 40.741 7.75 2.95 0.00 3.01
2739 3285 7.068470 CCGGAGTAATCCTATAGTTAGATTCCC 59.932 44.444 7.75 6.26 0.00 3.97
2740 3286 7.614583 CGGAGTAATCCTATAGTTAGATTCCCA 59.385 40.741 7.75 0.00 0.00 4.37
2741 3287 9.495382 GGAGTAATCCTATAGTTAGATTCCCAT 57.505 37.037 0.88 0.00 0.00 4.00
2746 3292 9.621239 AATCCTATAGTTAGATTCCCATCTGAA 57.379 33.333 0.00 0.00 40.28 3.02
2747 3293 9.621239 ATCCTATAGTTAGATTCCCATCTGAAA 57.379 33.333 0.00 0.00 40.28 2.69
2748 3294 9.621239 TCCTATAGTTAGATTCCCATCTGAAAT 57.379 33.333 0.00 0.00 40.28 2.17
2751 3297 6.705863 AGTTAGATTCCCATCTGAAATTGC 57.294 37.500 0.00 0.00 40.28 3.56
2752 3298 5.297776 AGTTAGATTCCCATCTGAAATTGCG 59.702 40.000 0.00 0.00 40.28 4.85
2753 3299 2.360165 AGATTCCCATCTGAAATTGCGC 59.640 45.455 0.00 0.00 38.44 6.09
2754 3300 1.838112 TTCCCATCTGAAATTGCGCT 58.162 45.000 9.73 0.00 0.00 5.92
2755 3301 1.382522 TCCCATCTGAAATTGCGCTC 58.617 50.000 9.73 0.00 0.00 5.03
2756 3302 1.065199 TCCCATCTGAAATTGCGCTCT 60.065 47.619 9.73 0.00 0.00 4.09
2757 3303 1.332997 CCCATCTGAAATTGCGCTCTC 59.667 52.381 9.73 0.00 0.00 3.20
2758 3304 2.286872 CCATCTGAAATTGCGCTCTCT 58.713 47.619 9.73 0.00 0.00 3.10
2759 3305 2.031807 CCATCTGAAATTGCGCTCTCTG 59.968 50.000 9.73 4.22 0.00 3.35
2760 3306 2.749280 TCTGAAATTGCGCTCTCTGA 57.251 45.000 9.73 6.53 0.00 3.27
2761 3307 2.614779 TCTGAAATTGCGCTCTCTGAG 58.385 47.619 9.73 0.00 0.00 3.35
2762 3308 2.232208 TCTGAAATTGCGCTCTCTGAGA 59.768 45.455 9.73 7.24 0.00 3.27
2763 3309 2.604011 CTGAAATTGCGCTCTCTGAGAG 59.396 50.000 26.58 26.58 45.04 3.20
2764 3310 2.028658 TGAAATTGCGCTCTCTGAGAGT 60.029 45.455 29.67 12.83 44.12 3.24
2765 3311 2.758736 AATTGCGCTCTCTGAGAGTT 57.241 45.000 29.67 16.45 44.12 3.01
2766 3312 2.292103 ATTGCGCTCTCTGAGAGTTC 57.708 50.000 29.67 22.36 44.12 3.01
2767 3313 0.961753 TTGCGCTCTCTGAGAGTTCA 59.038 50.000 29.67 24.17 44.12 3.18
2768 3314 0.242286 TGCGCTCTCTGAGAGTTCAC 59.758 55.000 29.67 18.93 44.12 3.18
2769 3315 0.457681 GCGCTCTCTGAGAGTTCACC 60.458 60.000 29.67 15.39 44.12 4.02
2770 3316 0.884514 CGCTCTCTGAGAGTTCACCA 59.115 55.000 29.67 0.00 44.12 4.17
2771 3317 1.270826 CGCTCTCTGAGAGTTCACCAA 59.729 52.381 29.67 0.00 44.12 3.67
2772 3318 2.682836 GCTCTCTGAGAGTTCACCAAC 58.317 52.381 29.67 11.55 44.12 3.77
2773 3319 2.298729 GCTCTCTGAGAGTTCACCAACT 59.701 50.000 29.67 0.00 46.21 3.16
2774 3320 3.244044 GCTCTCTGAGAGTTCACCAACTT 60.244 47.826 29.67 0.00 43.37 2.66
2775 3321 4.742138 GCTCTCTGAGAGTTCACCAACTTT 60.742 45.833 29.67 0.00 43.37 2.66
2776 3322 4.697514 TCTCTGAGAGTTCACCAACTTTG 58.302 43.478 9.62 0.00 43.37 2.77
2777 3323 6.253117 CTCTCTGAGAGTTCACCAACTTTGG 61.253 48.000 23.49 6.45 43.37 3.28
2785 3331 3.354678 CCAACTTTGGGCCGTCAG 58.645 61.111 0.00 0.00 44.70 3.51
2786 3332 1.228124 CCAACTTTGGGCCGTCAGA 60.228 57.895 0.00 0.00 44.70 3.27
2787 3333 0.609131 CCAACTTTGGGCCGTCAGAT 60.609 55.000 0.00 0.00 44.70 2.90
2788 3334 0.804989 CAACTTTGGGCCGTCAGATC 59.195 55.000 0.00 0.00 0.00 2.75
2789 3335 0.693049 AACTTTGGGCCGTCAGATCT 59.307 50.000 0.00 0.00 0.00 2.75
2790 3336 0.250513 ACTTTGGGCCGTCAGATCTC 59.749 55.000 0.00 0.00 0.00 2.75
2791 3337 0.250234 CTTTGGGCCGTCAGATCTCA 59.750 55.000 0.00 0.00 0.00 3.27
2792 3338 0.690192 TTTGGGCCGTCAGATCTCAA 59.310 50.000 0.00 0.00 0.00 3.02
2793 3339 0.250234 TTGGGCCGTCAGATCTCAAG 59.750 55.000 0.00 0.00 0.00 3.02
2794 3340 1.522580 GGGCCGTCAGATCTCAAGC 60.523 63.158 0.00 0.00 0.00 4.01
2795 3341 1.519719 GGCCGTCAGATCTCAAGCT 59.480 57.895 0.00 0.00 0.00 3.74
2796 3342 0.107945 GGCCGTCAGATCTCAAGCTT 60.108 55.000 0.00 0.00 0.00 3.74
2797 3343 1.005340 GCCGTCAGATCTCAAGCTTG 58.995 55.000 20.81 20.81 0.00 4.01
2798 3344 1.404717 GCCGTCAGATCTCAAGCTTGA 60.405 52.381 26.87 26.87 35.57 3.02
2799 3345 2.741228 GCCGTCAGATCTCAAGCTTGAT 60.741 50.000 28.57 15.83 36.46 2.57
2800 3346 2.864946 CCGTCAGATCTCAAGCTTGATG 59.135 50.000 28.57 22.60 36.46 3.07
2801 3347 3.519579 CGTCAGATCTCAAGCTTGATGT 58.480 45.455 28.57 19.62 36.46 3.06
2802 3348 3.306434 CGTCAGATCTCAAGCTTGATGTG 59.694 47.826 28.57 22.04 36.46 3.21
2803 3349 4.502016 GTCAGATCTCAAGCTTGATGTGA 58.498 43.478 28.57 23.78 39.55 3.58
2804 3350 5.117584 GTCAGATCTCAAGCTTGATGTGAT 58.882 41.667 28.57 25.22 42.26 3.06
2805 3351 5.585445 GTCAGATCTCAAGCTTGATGTGATT 59.415 40.000 28.57 14.77 42.26 2.57
2806 3352 5.816258 TCAGATCTCAAGCTTGATGTGATTC 59.184 40.000 28.57 18.68 37.83 2.52
2807 3353 5.818336 CAGATCTCAAGCTTGATGTGATTCT 59.182 40.000 28.57 20.15 36.46 2.40
2808 3354 6.985059 CAGATCTCAAGCTTGATGTGATTCTA 59.015 38.462 28.57 3.33 36.46 2.10
2809 3355 7.170151 CAGATCTCAAGCTTGATGTGATTCTAG 59.830 40.741 28.57 13.28 36.46 2.43
2810 3356 5.114780 TCTCAAGCTTGATGTGATTCTAGC 58.885 41.667 28.57 0.58 42.45 3.42
2811 3357 4.194640 TCAAGCTTGATGTGATTCTAGCC 58.805 43.478 25.16 0.00 42.91 3.93
2812 3358 3.920231 AGCTTGATGTGATTCTAGCCA 57.080 42.857 4.65 0.00 42.91 4.75
2813 3359 4.434545 AGCTTGATGTGATTCTAGCCAT 57.565 40.909 4.65 0.00 42.91 4.40
2814 3360 4.387598 AGCTTGATGTGATTCTAGCCATC 58.612 43.478 4.65 0.00 42.91 3.51
2815 3361 4.102838 AGCTTGATGTGATTCTAGCCATCT 59.897 41.667 4.65 0.00 42.91 2.90
2816 3362 4.213694 GCTTGATGTGATTCTAGCCATCTG 59.786 45.833 0.00 0.00 38.17 2.90
2817 3363 5.363562 TTGATGTGATTCTAGCCATCTGT 57.636 39.130 0.00 0.00 35.76 3.41
2818 3364 4.953667 TGATGTGATTCTAGCCATCTGTC 58.046 43.478 0.00 1.53 35.76 3.51
2819 3365 4.652881 TGATGTGATTCTAGCCATCTGTCT 59.347 41.667 0.00 0.00 35.76 3.41
2820 3366 4.397481 TGTGATTCTAGCCATCTGTCTG 57.603 45.455 4.06 0.00 0.00 3.51
2821 3367 3.133542 TGTGATTCTAGCCATCTGTCTGG 59.866 47.826 4.06 0.00 39.45 3.86
2822 3368 2.702478 TGATTCTAGCCATCTGTCTGGG 59.298 50.000 4.06 0.00 36.75 4.45
2826 3372 2.191641 GCCATCTGTCTGGGCCTC 59.808 66.667 4.53 0.00 41.90 4.70
2827 3373 2.914289 CCATCTGTCTGGGCCTCC 59.086 66.667 4.53 0.00 32.28 4.30
2828 3374 1.997311 CCATCTGTCTGGGCCTCCA 60.997 63.158 4.53 0.00 41.58 3.86
2829 3375 1.565390 CCATCTGTCTGGGCCTCCAA 61.565 60.000 4.53 0.00 43.51 3.53
2830 3376 0.549950 CATCTGTCTGGGCCTCCAAT 59.450 55.000 4.53 0.00 43.51 3.16
2831 3377 0.549950 ATCTGTCTGGGCCTCCAATG 59.450 55.000 4.53 0.00 43.51 2.82
2832 3378 1.077212 CTGTCTGGGCCTCCAATGG 60.077 63.158 4.53 0.00 43.51 3.16
2840 3386 4.972875 CCTCCAATGGCTCCTGAC 57.027 61.111 0.00 0.00 0.00 3.51
2841 3387 1.225704 CCTCCAATGGCTCCTGACC 59.774 63.158 0.00 0.00 0.00 4.02
2842 3388 1.153289 CTCCAATGGCTCCTGACCG 60.153 63.158 0.00 0.00 0.00 4.79
2843 3389 1.903877 CTCCAATGGCTCCTGACCGT 61.904 60.000 0.00 0.00 0.00 4.83
2844 3390 1.450312 CCAATGGCTCCTGACCGTC 60.450 63.158 0.00 0.00 0.00 4.79
2845 3391 1.296392 CAATGGCTCCTGACCGTCA 59.704 57.895 0.29 0.29 0.00 4.35
2846 3392 0.321564 CAATGGCTCCTGACCGTCAA 60.322 55.000 2.19 0.00 0.00 3.18
2847 3393 0.400213 AATGGCTCCTGACCGTCAAA 59.600 50.000 2.19 0.00 0.00 2.69
2848 3394 0.620556 ATGGCTCCTGACCGTCAAAT 59.379 50.000 2.19 0.00 0.00 2.32
2849 3395 1.271856 TGGCTCCTGACCGTCAAATA 58.728 50.000 2.19 0.00 0.00 1.40
2850 3396 1.626321 TGGCTCCTGACCGTCAAATAA 59.374 47.619 2.19 0.00 0.00 1.40
2851 3397 2.039216 TGGCTCCTGACCGTCAAATAAA 59.961 45.455 2.19 0.00 0.00 1.40
2852 3398 3.279434 GGCTCCTGACCGTCAAATAAAT 58.721 45.455 2.19 0.00 0.00 1.40
2853 3399 4.080807 TGGCTCCTGACCGTCAAATAAATA 60.081 41.667 2.19 0.00 0.00 1.40
2854 3400 5.063880 GGCTCCTGACCGTCAAATAAATAT 58.936 41.667 2.19 0.00 0.00 1.28
2855 3401 5.179555 GGCTCCTGACCGTCAAATAAATATC 59.820 44.000 2.19 0.00 0.00 1.63
2856 3402 5.758296 GCTCCTGACCGTCAAATAAATATCA 59.242 40.000 2.19 0.00 0.00 2.15
2857 3403 6.073548 GCTCCTGACCGTCAAATAAATATCAG 60.074 42.308 2.19 0.00 33.63 2.90
2858 3404 6.545504 CCTGACCGTCAAATAAATATCAGG 57.454 41.667 2.19 2.75 44.33 3.86
2859 3405 6.055588 CCTGACCGTCAAATAAATATCAGGT 58.944 40.000 2.19 0.00 44.58 4.00
2860 3406 6.202954 CCTGACCGTCAAATAAATATCAGGTC 59.797 42.308 2.19 4.06 44.58 3.85
2861 3407 6.884832 TGACCGTCAAATAAATATCAGGTCT 58.115 36.000 11.36 0.00 44.14 3.85
2862 3408 6.761242 TGACCGTCAAATAAATATCAGGTCTG 59.239 38.462 11.36 0.00 44.14 3.51
2863 3409 6.884832 ACCGTCAAATAAATATCAGGTCTGA 58.115 36.000 2.93 2.93 44.59 3.27
2864 3410 7.335627 ACCGTCAAATAAATATCAGGTCTGAA 58.664 34.615 4.67 0.00 43.58 3.02
2865 3411 7.495934 ACCGTCAAATAAATATCAGGTCTGAAG 59.504 37.037 4.67 0.00 43.58 3.02
2866 3412 7.710907 CCGTCAAATAAATATCAGGTCTGAAGA 59.289 37.037 4.67 0.00 43.58 2.87
2867 3413 9.098355 CGTCAAATAAATATCAGGTCTGAAGAA 57.902 33.333 4.67 0.00 43.58 2.52
2903 3449 5.703730 AAAATCCCGTAGTTAGATTCCCA 57.296 39.130 0.00 0.00 30.06 4.37
2904 3450 5.906772 AAATCCCGTAGTTAGATTCCCAT 57.093 39.130 0.00 0.00 30.06 4.00
2905 3451 5.485209 AATCCCGTAGTTAGATTCCCATC 57.515 43.478 0.00 0.00 0.00 3.51
2906 3452 4.194678 TCCCGTAGTTAGATTCCCATCT 57.805 45.455 0.00 0.00 42.83 2.90
2907 3453 3.895656 TCCCGTAGTTAGATTCCCATCTG 59.104 47.826 0.00 0.00 40.28 2.90
2908 3454 3.895656 CCCGTAGTTAGATTCCCATCTGA 59.104 47.826 0.00 0.00 40.28 3.27
2909 3455 4.344102 CCCGTAGTTAGATTCCCATCTGAA 59.656 45.833 0.00 0.00 40.28 3.02
2910 3456 5.163343 CCCGTAGTTAGATTCCCATCTGAAA 60.163 44.000 0.00 0.00 40.28 2.69
2911 3457 6.464465 CCCGTAGTTAGATTCCCATCTGAAAT 60.464 42.308 0.00 0.00 40.28 2.17
2912 3458 6.992715 CCGTAGTTAGATTCCCATCTGAAATT 59.007 38.462 0.00 0.00 40.28 1.82
2913 3459 7.041780 CCGTAGTTAGATTCCCATCTGAAATTG 60.042 40.741 0.00 0.00 40.28 2.32
2914 3460 7.041780 CGTAGTTAGATTCCCATCTGAAATTGG 60.042 40.741 0.00 0.00 40.28 3.16
2919 3465 2.449137 CCCATCTGAAATTGGGCTCT 57.551 50.000 2.01 0.00 45.83 4.09
2920 3466 2.305009 CCCATCTGAAATTGGGCTCTC 58.695 52.381 2.01 0.00 45.83 3.20
2921 3467 2.091994 CCCATCTGAAATTGGGCTCTCT 60.092 50.000 2.01 0.00 45.83 3.10
2922 3468 3.212685 CCATCTGAAATTGGGCTCTCTC 58.787 50.000 0.00 0.00 0.00 3.20
2923 3469 3.371273 CCATCTGAAATTGGGCTCTCTCA 60.371 47.826 0.00 0.00 0.00 3.27
2924 3470 3.623906 TCTGAAATTGGGCTCTCTCAG 57.376 47.619 0.00 0.00 33.21 3.35
2925 3471 3.176411 TCTGAAATTGGGCTCTCTCAGA 58.824 45.455 4.13 4.13 37.54 3.27
2926 3472 3.197333 TCTGAAATTGGGCTCTCTCAGAG 59.803 47.826 0.00 0.00 45.04 3.35
2935 3481 2.282701 CTCTCTCAGAGCTCAGCAAC 57.717 55.000 17.77 0.00 35.30 4.17
2936 3482 1.820519 CTCTCTCAGAGCTCAGCAACT 59.179 52.381 17.77 0.00 35.30 3.16
2937 3483 2.231964 CTCTCTCAGAGCTCAGCAACTT 59.768 50.000 17.77 0.00 35.30 2.66
2938 3484 2.632028 TCTCTCAGAGCTCAGCAACTTT 59.368 45.455 17.77 0.00 0.00 2.66
2939 3485 2.737783 CTCTCAGAGCTCAGCAACTTTG 59.262 50.000 17.77 2.52 0.00 2.77
2940 3486 1.805345 CTCAGAGCTCAGCAACTTTGG 59.195 52.381 17.77 0.00 0.00 3.28
2941 3487 1.417517 TCAGAGCTCAGCAACTTTGGA 59.582 47.619 17.77 0.00 0.00 3.53
2942 3488 1.534595 CAGAGCTCAGCAACTTTGGAC 59.465 52.381 17.77 0.00 0.00 4.02
2943 3489 0.877743 GAGCTCAGCAACTTTGGACC 59.122 55.000 9.40 0.00 0.00 4.46
2944 3490 0.886490 AGCTCAGCAACTTTGGACCG 60.886 55.000 0.00 0.00 0.00 4.79
2945 3491 1.166531 GCTCAGCAACTTTGGACCGT 61.167 55.000 0.00 0.00 0.00 4.83
2946 3492 0.868406 CTCAGCAACTTTGGACCGTC 59.132 55.000 0.00 0.00 0.00 4.79
2947 3493 0.179234 TCAGCAACTTTGGACCGTCA 59.821 50.000 0.00 0.00 0.00 4.35
2948 3494 0.588252 CAGCAACTTTGGACCGTCAG 59.412 55.000 0.00 0.00 0.00 3.51
2949 3495 0.468226 AGCAACTTTGGACCGTCAGA 59.532 50.000 0.00 0.00 0.00 3.27
2950 3496 1.072331 AGCAACTTTGGACCGTCAGAT 59.928 47.619 0.00 0.00 0.00 2.90
2951 3497 1.464997 GCAACTTTGGACCGTCAGATC 59.535 52.381 0.00 0.00 0.00 2.75
2952 3498 2.872038 GCAACTTTGGACCGTCAGATCT 60.872 50.000 0.00 0.00 0.00 2.75
2953 3499 2.996621 CAACTTTGGACCGTCAGATCTC 59.003 50.000 0.00 0.00 0.00 2.75
2954 3500 1.202582 ACTTTGGACCGTCAGATCTCG 59.797 52.381 0.00 0.00 0.00 4.04
2955 3501 1.472878 CTTTGGACCGTCAGATCTCGA 59.527 52.381 5.45 0.00 0.00 4.04
2956 3502 1.095600 TTGGACCGTCAGATCTCGAG 58.904 55.000 5.93 5.93 0.00 4.04
2957 3503 1.357334 GGACCGTCAGATCTCGAGC 59.643 63.158 7.81 0.00 0.00 5.03
2958 3504 1.098712 GGACCGTCAGATCTCGAGCT 61.099 60.000 7.81 0.00 0.00 4.09
2959 3505 0.736053 GACCGTCAGATCTCGAGCTT 59.264 55.000 7.81 0.00 0.00 3.74
2960 3506 0.453793 ACCGTCAGATCTCGAGCTTG 59.546 55.000 7.81 5.95 0.00 4.01
2961 3507 0.735471 CCGTCAGATCTCGAGCTTGA 59.265 55.000 7.81 8.31 0.00 3.02
2962 3508 1.336440 CCGTCAGATCTCGAGCTTGAT 59.664 52.381 7.81 0.66 0.00 2.57
2963 3509 2.383450 CGTCAGATCTCGAGCTTGATG 58.617 52.381 7.81 12.09 0.00 3.07
2964 3510 2.126467 GTCAGATCTCGAGCTTGATGC 58.874 52.381 7.81 0.00 43.29 3.91
2975 3521 1.586422 GCTTGATGCGATTCTAGCCA 58.414 50.000 9.27 0.00 38.17 4.75
2976 3522 2.149578 GCTTGATGCGATTCTAGCCAT 58.850 47.619 9.27 0.00 38.17 4.40
2977 3523 2.159234 GCTTGATGCGATTCTAGCCATC 59.841 50.000 9.27 0.00 38.17 3.51
2978 3524 3.661944 CTTGATGCGATTCTAGCCATCT 58.338 45.455 0.00 0.00 0.00 2.90
2979 3525 3.036075 TGATGCGATTCTAGCCATCTG 57.964 47.619 0.00 0.00 0.00 2.90
2980 3526 2.629617 TGATGCGATTCTAGCCATCTGA 59.370 45.455 0.00 0.00 0.00 3.27
2981 3527 2.515926 TGCGATTCTAGCCATCTGAC 57.484 50.000 0.00 0.00 0.00 3.51
2982 3528 2.034878 TGCGATTCTAGCCATCTGACT 58.965 47.619 0.00 0.00 0.00 3.41
2983 3529 2.223900 TGCGATTCTAGCCATCTGACTG 60.224 50.000 0.00 0.00 0.00 3.51
2984 3530 2.865670 GCGATTCTAGCCATCTGACTGG 60.866 54.545 0.00 2.84 39.45 4.00
2985 3531 2.288702 CGATTCTAGCCATCTGACTGGG 60.289 54.545 7.80 0.00 36.75 4.45
2986 3532 1.500474 TTCTAGCCATCTGACTGGGG 58.500 55.000 7.80 0.00 36.75 4.96
2987 3533 1.050988 TCTAGCCATCTGACTGGGGC 61.051 60.000 0.00 0.00 46.77 5.80
2989 3535 2.191641 GCCATCTGACTGGGGCTC 59.808 66.667 0.00 0.00 43.09 4.70
2990 3536 2.914289 CCATCTGACTGGGGCTCC 59.086 66.667 0.00 0.00 32.28 4.70
2991 3537 1.997311 CCATCTGACTGGGGCTCCA 60.997 63.158 4.49 4.49 41.58 3.86
2999 3545 3.415186 TGGGGCTCCAGTGATTCC 58.585 61.111 0.00 0.00 38.32 3.01
3000 3546 1.229951 TGGGGCTCCAGTGATTCCT 60.230 57.895 0.00 0.00 38.32 3.36
3001 3547 1.225704 GGGGCTCCAGTGATTCCTG 59.774 63.158 0.00 0.00 0.00 3.86
3002 3548 1.274703 GGGGCTCCAGTGATTCCTGA 61.275 60.000 0.00 0.00 34.23 3.86
3003 3549 0.107459 GGGCTCCAGTGATTCCTGAC 60.107 60.000 0.00 0.00 34.23 3.51
3004 3550 0.107459 GGCTCCAGTGATTCCTGACC 60.107 60.000 0.00 0.89 34.23 4.02
3005 3551 0.460987 GCTCCAGTGATTCCTGACCG 60.461 60.000 0.00 0.00 34.23 4.79
3006 3552 0.898320 CTCCAGTGATTCCTGACCGT 59.102 55.000 0.00 0.00 34.23 4.83
3007 3553 0.895530 TCCAGTGATTCCTGACCGTC 59.104 55.000 0.00 0.00 34.23 4.79
3008 3554 0.608130 CCAGTGATTCCTGACCGTCA 59.392 55.000 0.29 0.29 34.23 4.35
3009 3555 1.404717 CCAGTGATTCCTGACCGTCAG 60.405 57.143 19.97 19.97 43.91 3.51
3023 3569 6.085555 TGACCGTCAGATAAATATCAGGTC 57.914 41.667 19.19 19.19 40.88 3.85
3024 3570 5.833667 TGACCGTCAGATAAATATCAGGTCT 59.166 40.000 22.60 0.00 40.97 3.85
3025 3571 6.090483 ACCGTCAGATAAATATCAGGTCTG 57.910 41.667 3.45 0.00 38.07 3.51
3026 3572 5.833667 ACCGTCAGATAAATATCAGGTCTGA 59.166 40.000 2.93 2.93 41.99 3.27
3027 3573 6.323996 ACCGTCAGATAAATATCAGGTCTGAA 59.676 38.462 4.67 0.00 44.68 3.02
3028 3574 6.865726 CCGTCAGATAAATATCAGGTCTGAAG 59.134 42.308 4.67 7.17 44.68 3.02
3029 3575 7.255625 CCGTCAGATAAATATCAGGTCTGAAGA 60.256 40.741 14.95 0.00 44.68 2.87
3030 3576 8.138074 CGTCAGATAAATATCAGGTCTGAAGAA 58.862 37.037 4.67 0.00 44.68 2.52
3031 3577 9.823647 GTCAGATAAATATCAGGTCTGAAGAAA 57.176 33.333 4.67 0.00 44.68 2.52
3067 3613 9.554395 AAAAACAAATACACTTAGGGATTTTGG 57.446 29.630 14.51 0.00 0.00 3.28
3068 3614 6.280855 ACAAATACACTTAGGGATTTTGGC 57.719 37.500 14.51 0.00 0.00 4.52
3069 3615 5.186992 ACAAATACACTTAGGGATTTTGGCC 59.813 40.000 14.51 0.00 0.00 5.36
3070 3616 4.881157 ATACACTTAGGGATTTTGGCCT 57.119 40.909 3.32 0.00 0.00 5.19
3071 3617 3.542969 ACACTTAGGGATTTTGGCCTT 57.457 42.857 3.32 0.00 0.00 4.35
3072 3618 4.668138 ACACTTAGGGATTTTGGCCTTA 57.332 40.909 3.32 0.00 0.00 2.69
3073 3619 5.206905 ACACTTAGGGATTTTGGCCTTAT 57.793 39.130 3.32 0.00 0.00 1.73
3074 3620 5.201243 ACACTTAGGGATTTTGGCCTTATC 58.799 41.667 3.32 3.99 0.00 1.75
3075 3621 5.044105 ACACTTAGGGATTTTGGCCTTATCT 60.044 40.000 3.32 0.00 0.00 1.98
3076 3622 5.300286 CACTTAGGGATTTTGGCCTTATCTG 59.700 44.000 3.32 0.00 0.00 2.90
3077 3623 3.319031 AGGGATTTTGGCCTTATCTGG 57.681 47.619 3.32 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.553651 GGAGGGGACAAGAGGAAGAGT 60.554 57.143 0.00 0.00 0.00 3.24
9 10 1.064825 GTTGGAGGGGACAAGAGGAA 58.935 55.000 0.00 0.00 0.00 3.36
40 41 2.573340 CTGGGGGCATCGTTTTGC 59.427 61.111 0.00 0.19 42.01 3.68
204 217 1.764723 CCTGACTACCTGATCATGGCA 59.235 52.381 0.00 0.00 0.00 4.92
212 225 1.320344 AATCGCGCCTGACTACCTGA 61.320 55.000 0.00 0.00 0.00 3.86
213 226 0.460284 AAATCGCGCCTGACTACCTG 60.460 55.000 0.00 0.00 0.00 4.00
214 227 0.249398 AAAATCGCGCCTGACTACCT 59.751 50.000 0.00 0.00 0.00 3.08
217 230 2.201732 GATGAAAATCGCGCCTGACTA 58.798 47.619 0.00 0.00 0.00 2.59
372 385 0.753262 CCACTGCGGAGTAGCCTTAT 59.247 55.000 10.03 0.00 46.71 1.73
373 386 0.323999 TCCACTGCGGAGTAGCCTTA 60.324 55.000 10.03 0.00 46.71 2.69
387 400 2.502492 CGCCCCGATCAGATCCACT 61.502 63.158 4.73 0.00 0.00 4.00
389 402 2.063979 AACGCCCCGATCAGATCCA 61.064 57.895 4.73 0.00 0.00 3.41
395 408 2.504032 GATCCAACGCCCCGATCA 59.496 61.111 0.00 0.00 33.95 2.92
404 417 3.554692 GCGACTGCGGATCCAACG 61.555 66.667 13.41 10.15 38.16 4.10
472 487 4.388499 GATGGACGGTGGCGGTGT 62.388 66.667 0.00 0.00 0.00 4.16
480 495 3.083997 GGCCCTGAGATGGACGGT 61.084 66.667 0.00 0.00 0.00 4.83
759 791 8.985315 AGTATGATTGCTTTCATTATTCCTCA 57.015 30.769 7.17 0.00 37.51 3.86
780 812 7.945664 ACACTCCTCGGAGATTTAGATTAGTAT 59.054 37.037 19.35 0.00 44.53 2.12
788 820 3.067461 CCTGACACTCCTCGGAGATTTAG 59.933 52.174 19.35 10.53 44.53 1.85
797 829 1.337260 CCAACTTCCTGACACTCCTCG 60.337 57.143 0.00 0.00 0.00 4.63
805 837 3.493767 AACCTTCTCCAACTTCCTGAC 57.506 47.619 0.00 0.00 0.00 3.51
811 843 2.501261 GCCGTAAACCTTCTCCAACTT 58.499 47.619 0.00 0.00 0.00 2.66
826 858 2.760799 ATAGGTGTGCCGGCCGTA 60.761 61.111 26.77 14.84 40.50 4.02
843 875 0.468226 GTCGGGCATATGGTTCCAGA 59.532 55.000 4.56 0.85 0.00 3.86
846 878 1.597027 CGGTCGGGCATATGGTTCC 60.597 63.158 4.56 0.00 0.00 3.62
851 883 2.445274 CGATTCGGTCGGGCATATG 58.555 57.895 0.00 0.00 46.47 1.78
860 892 4.675510 TCAAATACCACTACGATTCGGTC 58.324 43.478 11.29 0.00 32.81 4.79
861 893 4.724074 TCAAATACCACTACGATTCGGT 57.276 40.909 11.29 0.71 35.46 4.69
862 894 6.411630 TTTTCAAATACCACTACGATTCGG 57.588 37.500 11.29 0.00 0.00 4.30
863 895 6.311935 TCCTTTTCAAATACCACTACGATTCG 59.688 38.462 4.14 4.14 0.00 3.34
884 916 9.715121 TTTTCTGATACACGTAATAGTTTCCTT 57.285 29.630 0.00 0.00 0.00 3.36
894 926 5.290158 GCGATTCCTTTTCTGATACACGTAA 59.710 40.000 0.00 0.00 0.00 3.18
895 927 4.802039 GCGATTCCTTTTCTGATACACGTA 59.198 41.667 0.00 0.00 0.00 3.57
896 928 3.617263 GCGATTCCTTTTCTGATACACGT 59.383 43.478 0.00 0.00 0.00 4.49
922 954 5.633601 TCGTATCGTAATGATTCCAGCAATC 59.366 40.000 0.00 0.00 41.42 2.67
923 955 5.538118 TCGTATCGTAATGATTCCAGCAAT 58.462 37.500 0.00 0.00 38.57 3.56
924 956 4.939271 TCGTATCGTAATGATTCCAGCAA 58.061 39.130 0.00 0.00 38.57 3.91
925 957 4.577834 TCGTATCGTAATGATTCCAGCA 57.422 40.909 0.00 0.00 38.57 4.41
926 958 5.233476 TGTTTCGTATCGTAATGATTCCAGC 59.767 40.000 0.00 0.00 38.57 4.85
927 959 6.822073 TGTTTCGTATCGTAATGATTCCAG 57.178 37.500 0.00 0.00 38.57 3.86
928 960 6.237622 CGTTGTTTCGTATCGTAATGATTCCA 60.238 38.462 0.00 0.00 38.57 3.53
929 961 6.020440 TCGTTGTTTCGTATCGTAATGATTCC 60.020 38.462 0.00 0.00 38.57 3.01
930 962 6.914935 TCGTTGTTTCGTATCGTAATGATTC 58.085 36.000 0.00 0.00 38.57 2.52
931 963 6.874297 TCGTTGTTTCGTATCGTAATGATT 57.126 33.333 0.00 0.00 38.57 2.57
981 1013 6.541641 AGTTGTTCCAATGATCTCTATTCAGC 59.458 38.462 0.00 0.00 0.00 4.26
983 1015 7.397221 ACAGTTGTTCCAATGATCTCTATTCA 58.603 34.615 0.00 0.00 0.00 2.57
1004 1044 1.660575 CGAGAACGTCGCCAACAGT 60.661 57.895 0.00 0.00 43.03 3.55
1033 1077 4.704833 GCAGCAGCCGGGTTCTCA 62.705 66.667 1.64 0.00 33.58 3.27
1054 1098 1.075542 CTTCGCCGTGATTAACTGCA 58.924 50.000 0.00 0.00 38.83 4.41
1055 1099 0.373716 CCTTCGCCGTGATTAACTGC 59.626 55.000 0.00 0.00 35.79 4.40
1056 1100 0.373716 GCCTTCGCCGTGATTAACTG 59.626 55.000 0.00 0.00 0.00 3.16
1248 1292 0.794473 GTTGCCGGTAAAGTCCTTCG 59.206 55.000 6.53 0.00 0.00 3.79
1284 1328 4.589374 CGTCCTTCCCCTTACTGAGATAAT 59.411 45.833 0.00 0.00 0.00 1.28
1287 1331 2.389715 CGTCCTTCCCCTTACTGAGAT 58.610 52.381 0.00 0.00 0.00 2.75
1471 1568 3.797256 CGGTGGAACTACGATGAGATTTC 59.203 47.826 0.00 0.00 36.74 2.17
1496 1593 3.056313 GATGTTGCCGGGCAGCTTC 62.056 63.158 31.44 29.22 40.35 3.86
1515 1612 2.032681 GTCCTTGAGGGTGCGCTT 59.967 61.111 9.73 0.00 36.25 4.68
1740 1837 2.320805 TCGTAACCTTTCTCGTCACG 57.679 50.000 0.00 0.00 0.00 4.35
1756 1853 1.377594 TGCATGGAAGCAGCATCGT 60.378 52.632 0.00 0.00 40.11 3.73
1811 1908 1.162698 CACACATCACCTTGAGCCTG 58.837 55.000 0.00 0.00 0.00 4.85
1838 1935 2.290641 GACGTTGATGCTTTTGGACAGT 59.709 45.455 0.00 0.00 0.00 3.55
1844 1941 2.350772 GGTCTGGACGTTGATGCTTTTG 60.351 50.000 0.00 0.00 0.00 2.44
1862 1959 0.179145 CCCATGTACTCGTGACGGTC 60.179 60.000 4.70 0.00 32.78 4.79
1879 1976 3.512516 GCTGATCTGCAACCGCCC 61.513 66.667 18.67 0.00 37.32 6.13
1943 2040 0.110486 CAATGGTCCCTATTCCCGGG 59.890 60.000 16.85 16.85 43.38 5.73
1956 2053 4.760204 CCCGTTTCTTAAAGAGACAATGGT 59.240 41.667 0.00 0.00 33.88 3.55
1964 2061 5.202640 CGTTTGAACCCGTTTCTTAAAGAG 58.797 41.667 0.00 0.00 34.97 2.85
1989 2086 1.201647 CAGTTCCAGCTTTGCCATGAG 59.798 52.381 0.00 0.00 0.00 2.90
1991 2088 0.245539 CCAGTTCCAGCTTTGCCATG 59.754 55.000 0.00 0.00 0.00 3.66
2003 2100 2.284405 TCCTCGTCCCCCAGTTCC 60.284 66.667 0.00 0.00 0.00 3.62
2008 2105 4.414956 ATGCCTCCTCGTCCCCCA 62.415 66.667 0.00 0.00 0.00 4.96
2012 2112 2.107953 GCAGATGCCTCCTCGTCC 59.892 66.667 0.00 0.00 34.31 4.79
2029 2129 1.590792 GATTACTTCGTCCCCGCGG 60.591 63.158 21.04 21.04 0.00 6.46
2031 2131 1.287425 CAAGATTACTTCGTCCCCGC 58.713 55.000 0.00 0.00 33.70 6.13
2034 2134 5.107824 GGTCTTACAAGATTACTTCGTCCC 58.892 45.833 0.00 0.00 37.39 4.46
2035 2135 5.717119 TGGTCTTACAAGATTACTTCGTCC 58.283 41.667 0.00 0.00 37.39 4.79
2068 2171 9.507280 CAAAAATCGTATGCAATTTCTCACTAT 57.493 29.630 0.00 0.00 0.00 2.12
2069 2172 7.967854 CCAAAAATCGTATGCAATTTCTCACTA 59.032 33.333 0.00 0.00 0.00 2.74
2070 2173 6.808212 CCAAAAATCGTATGCAATTTCTCACT 59.192 34.615 0.00 0.00 0.00 3.41
2072 2175 6.918626 TCCAAAAATCGTATGCAATTTCTCA 58.081 32.000 0.00 0.00 0.00 3.27
2073 2176 6.473455 CCTCCAAAAATCGTATGCAATTTCTC 59.527 38.462 0.00 0.00 0.00 2.87
2074 2177 6.152661 TCCTCCAAAAATCGTATGCAATTTCT 59.847 34.615 0.00 0.00 0.00 2.52
2075 2178 6.329496 TCCTCCAAAAATCGTATGCAATTTC 58.671 36.000 0.00 0.00 0.00 2.17
2170 2716 9.743937 CAAAATGTTGTAAAAATGAATCCGATG 57.256 29.630 0.00 0.00 0.00 3.84
2173 2719 8.304202 TCCAAAATGTTGTAAAAATGAATCCG 57.696 30.769 0.00 0.00 32.40 4.18
2174 2720 8.720562 CCTCCAAAATGTTGTAAAAATGAATCC 58.279 33.333 0.00 0.00 32.40 3.01
2321 2867 7.413000 CGCGGGATTATCAAAATACAAGGATAG 60.413 40.741 0.00 0.00 0.00 2.08
2325 2871 4.513692 TCGCGGGATTATCAAAATACAAGG 59.486 41.667 6.13 0.00 0.00 3.61
2377 2923 1.407618 GCATTGCCATCATCTTGCTCA 59.592 47.619 0.00 0.00 0.00 4.26
2529 3075 7.186804 ACAAATGTACGTGCTCATAATTTAGC 58.813 34.615 4.97 0.00 39.25 3.09
2555 3101 9.567848 GTTATGTTCAAACACGAATTTATGGAT 57.432 29.630 0.00 0.00 42.51 3.41
2560 3106 9.658475 CTGAAGTTATGTTCAAACACGAATTTA 57.342 29.630 0.00 0.00 42.51 1.40
2601 3147 4.887071 TGTGTGCCTGAAGTTATGTTCTTT 59.113 37.500 0.00 0.00 0.00 2.52
2602 3148 4.460263 TGTGTGCCTGAAGTTATGTTCTT 58.540 39.130 0.00 0.00 0.00 2.52
2603 3149 4.085357 TGTGTGCCTGAAGTTATGTTCT 57.915 40.909 0.00 0.00 0.00 3.01
2604 3150 4.697352 AGATGTGTGCCTGAAGTTATGTTC 59.303 41.667 0.00 0.00 0.00 3.18
2654 3200 2.374504 AGCCTCATAGGGAATGTGATGG 59.625 50.000 0.00 0.00 35.37 3.51
2666 3212 0.390860 CCAGGACGGAAGCCTCATAG 59.609 60.000 0.00 0.00 35.84 2.23
2699 3245 2.231215 CTCCGGATTGCTTAGGAGTG 57.769 55.000 3.57 0.00 43.82 3.51
2702 3248 3.323979 GGATTACTCCGGATTGCTTAGGA 59.676 47.826 3.57 0.00 0.00 2.94
2703 3249 3.665190 GGATTACTCCGGATTGCTTAGG 58.335 50.000 3.57 0.00 0.00 2.69
2715 3261 8.896722 TGGGAATCTAACTATAGGATTACTCC 57.103 38.462 4.43 3.53 42.43 3.85
2720 3266 9.621239 TTCAGATGGGAATCTAACTATAGGATT 57.379 33.333 4.43 3.74 0.00 3.01
2721 3267 9.621239 TTTCAGATGGGAATCTAACTATAGGAT 57.379 33.333 4.43 0.00 0.00 3.24
2722 3268 9.621239 ATTTCAGATGGGAATCTAACTATAGGA 57.379 33.333 4.43 0.00 0.00 2.94
2725 3271 9.507329 GCAATTTCAGATGGGAATCTAACTATA 57.493 33.333 0.00 0.00 0.00 1.31
2726 3272 7.173907 CGCAATTTCAGATGGGAATCTAACTAT 59.826 37.037 0.00 0.00 0.00 2.12
2727 3273 6.483307 CGCAATTTCAGATGGGAATCTAACTA 59.517 38.462 0.00 0.00 0.00 2.24
2728 3274 5.297776 CGCAATTTCAGATGGGAATCTAACT 59.702 40.000 0.00 0.00 0.00 2.24
2729 3275 5.514279 CGCAATTTCAGATGGGAATCTAAC 58.486 41.667 0.00 0.00 0.00 2.34
2730 3276 4.036734 GCGCAATTTCAGATGGGAATCTAA 59.963 41.667 0.30 0.00 0.00 2.10
2731 3277 3.565482 GCGCAATTTCAGATGGGAATCTA 59.435 43.478 0.30 0.00 0.00 1.98
2732 3278 2.360165 GCGCAATTTCAGATGGGAATCT 59.640 45.455 0.30 0.00 0.00 2.40
2733 3279 2.360165 AGCGCAATTTCAGATGGGAATC 59.640 45.455 11.47 0.00 0.00 2.52
2734 3280 2.360165 GAGCGCAATTTCAGATGGGAAT 59.640 45.455 11.47 0.00 0.00 3.01
2735 3281 1.745087 GAGCGCAATTTCAGATGGGAA 59.255 47.619 11.47 0.00 0.00 3.97
2736 3282 1.065199 AGAGCGCAATTTCAGATGGGA 60.065 47.619 11.47 0.00 0.00 4.37
2737 3283 1.332997 GAGAGCGCAATTTCAGATGGG 59.667 52.381 11.47 0.00 0.00 4.00
2738 3284 2.031807 CAGAGAGCGCAATTTCAGATGG 59.968 50.000 11.47 0.00 0.00 3.51
2739 3285 2.934553 TCAGAGAGCGCAATTTCAGATG 59.065 45.455 11.47 0.00 0.00 2.90
2740 3286 3.118847 TCTCAGAGAGCGCAATTTCAGAT 60.119 43.478 11.47 0.00 0.00 2.90
2741 3287 2.232208 TCTCAGAGAGCGCAATTTCAGA 59.768 45.455 11.47 0.49 0.00 3.27
2742 3288 2.604011 CTCTCAGAGAGCGCAATTTCAG 59.396 50.000 14.74 0.00 35.30 3.02
2743 3289 2.028658 ACTCTCAGAGAGCGCAATTTCA 60.029 45.455 25.20 0.00 46.12 2.69
2744 3290 2.615869 ACTCTCAGAGAGCGCAATTTC 58.384 47.619 25.20 0.00 46.12 2.17
2745 3291 2.758736 ACTCTCAGAGAGCGCAATTT 57.241 45.000 25.20 3.13 46.12 1.82
2746 3292 2.028658 TGAACTCTCAGAGAGCGCAATT 60.029 45.455 25.20 12.80 46.12 2.32
2747 3293 1.547820 TGAACTCTCAGAGAGCGCAAT 59.452 47.619 25.20 8.38 46.12 3.56
2748 3294 0.961753 TGAACTCTCAGAGAGCGCAA 59.038 50.000 25.20 7.82 46.12 4.85
2749 3295 0.242286 GTGAACTCTCAGAGAGCGCA 59.758 55.000 25.20 19.84 46.12 6.09
2750 3296 0.457681 GGTGAACTCTCAGAGAGCGC 60.458 60.000 25.20 17.71 46.12 5.92
2751 3297 0.884514 TGGTGAACTCTCAGAGAGCG 59.115 55.000 25.20 6.26 46.12 5.03
2752 3298 2.298729 AGTTGGTGAACTCTCAGAGAGC 59.701 50.000 25.20 11.96 46.12 4.09
2753 3299 6.253117 CCAAAGTTGGTGAACTCTCAGAGAG 61.253 48.000 23.90 23.90 41.87 3.20
2754 3300 4.443457 CCAAAGTTGGTGAACTCTCAGAGA 60.443 45.833 9.27 0.00 41.87 3.10
2755 3301 3.812053 CCAAAGTTGGTGAACTCTCAGAG 59.188 47.826 0.00 0.00 41.87 3.35
2756 3302 3.808728 CCAAAGTTGGTGAACTCTCAGA 58.191 45.455 1.63 0.00 41.87 3.27
2769 3315 0.804989 GATCTGACGGCCCAAAGTTG 59.195 55.000 0.00 0.00 0.00 3.16
2770 3316 0.693049 AGATCTGACGGCCCAAAGTT 59.307 50.000 0.00 0.00 0.00 2.66
2771 3317 0.250513 GAGATCTGACGGCCCAAAGT 59.749 55.000 0.00 0.00 0.00 2.66
2772 3318 0.250234 TGAGATCTGACGGCCCAAAG 59.750 55.000 0.00 0.00 0.00 2.77
2773 3319 0.690192 TTGAGATCTGACGGCCCAAA 59.310 50.000 0.00 0.00 0.00 3.28
2774 3320 0.250234 CTTGAGATCTGACGGCCCAA 59.750 55.000 0.00 0.00 0.00 4.12
2775 3321 1.900351 CTTGAGATCTGACGGCCCA 59.100 57.895 0.00 0.00 0.00 5.36
2776 3322 1.522580 GCTTGAGATCTGACGGCCC 60.523 63.158 0.00 0.00 0.00 5.80
2777 3323 0.107945 AAGCTTGAGATCTGACGGCC 60.108 55.000 0.00 0.00 0.00 6.13
2778 3324 1.005340 CAAGCTTGAGATCTGACGGC 58.995 55.000 22.31 0.00 0.00 5.68
2779 3325 2.662006 TCAAGCTTGAGATCTGACGG 57.338 50.000 25.16 0.00 32.50 4.79
2780 3326 3.306434 CACATCAAGCTTGAGATCTGACG 59.694 47.826 31.14 17.44 41.08 4.35
2781 3327 4.502016 TCACATCAAGCTTGAGATCTGAC 58.498 43.478 31.14 0.00 41.08 3.51
2782 3328 4.813750 TCACATCAAGCTTGAGATCTGA 57.186 40.909 31.14 23.37 41.08 3.27
2783 3329 5.818336 AGAATCACATCAAGCTTGAGATCTG 59.182 40.000 31.14 25.62 41.08 2.90
2784 3330 5.991861 AGAATCACATCAAGCTTGAGATCT 58.008 37.500 31.14 22.42 41.08 2.75
2785 3331 6.073657 GCTAGAATCACATCAAGCTTGAGATC 60.074 42.308 31.14 20.93 41.08 2.75
2786 3332 5.759273 GCTAGAATCACATCAAGCTTGAGAT 59.241 40.000 31.14 24.50 41.08 2.75
2787 3333 5.114780 GCTAGAATCACATCAAGCTTGAGA 58.885 41.667 31.14 23.49 41.08 3.27
2788 3334 4.272991 GGCTAGAATCACATCAAGCTTGAG 59.727 45.833 31.14 24.07 41.08 3.02
2789 3335 4.194640 GGCTAGAATCACATCAAGCTTGA 58.805 43.478 30.23 30.23 42.14 3.02
2790 3336 3.943381 TGGCTAGAATCACATCAAGCTTG 59.057 43.478 20.81 20.81 0.00 4.01
2791 3337 4.226427 TGGCTAGAATCACATCAAGCTT 57.774 40.909 0.00 0.00 0.00 3.74
2792 3338 3.920231 TGGCTAGAATCACATCAAGCT 57.080 42.857 0.00 0.00 0.00 3.74
2793 3339 4.213694 CAGATGGCTAGAATCACATCAAGC 59.786 45.833 0.00 0.00 41.55 4.01
2794 3340 5.366460 ACAGATGGCTAGAATCACATCAAG 58.634 41.667 0.00 0.00 41.55 3.02
2795 3341 5.129980 AGACAGATGGCTAGAATCACATCAA 59.870 40.000 0.00 0.00 41.55 2.57
2796 3342 4.652881 AGACAGATGGCTAGAATCACATCA 59.347 41.667 0.00 0.00 41.55 3.07
2797 3343 4.989797 CAGACAGATGGCTAGAATCACATC 59.010 45.833 0.00 0.00 39.89 3.06
2798 3344 4.202336 CCAGACAGATGGCTAGAATCACAT 60.202 45.833 0.00 0.00 32.48 3.21
2799 3345 3.133542 CCAGACAGATGGCTAGAATCACA 59.866 47.826 0.00 0.00 32.48 3.58
2800 3346 3.494048 CCCAGACAGATGGCTAGAATCAC 60.494 52.174 0.00 0.00 39.17 3.06
2801 3347 2.702478 CCCAGACAGATGGCTAGAATCA 59.298 50.000 0.00 0.00 39.17 2.57
2802 3348 2.549778 GCCCAGACAGATGGCTAGAATC 60.550 54.545 0.00 0.00 42.01 2.52
2803 3349 1.419387 GCCCAGACAGATGGCTAGAAT 59.581 52.381 0.00 0.00 42.01 2.40
2804 3350 0.833287 GCCCAGACAGATGGCTAGAA 59.167 55.000 0.00 0.00 42.01 2.10
2805 3351 1.050988 GGCCCAGACAGATGGCTAGA 61.051 60.000 0.00 0.00 44.71 2.43
2806 3352 1.053264 AGGCCCAGACAGATGGCTAG 61.053 60.000 0.00 0.00 44.71 3.42
2807 3353 1.003442 AGGCCCAGACAGATGGCTA 59.997 57.895 0.00 0.00 44.71 3.93
2808 3354 2.285969 AGGCCCAGACAGATGGCT 60.286 61.111 0.00 0.00 44.71 4.75
2809 3355 2.191641 GAGGCCCAGACAGATGGC 59.808 66.667 0.00 0.00 44.59 4.40
2810 3356 1.565390 TTGGAGGCCCAGACAGATGG 61.565 60.000 0.00 0.00 44.60 3.51
2811 3357 0.549950 ATTGGAGGCCCAGACAGATG 59.450 55.000 0.00 0.00 44.60 2.90
2812 3358 0.549950 CATTGGAGGCCCAGACAGAT 59.450 55.000 0.00 0.00 44.60 2.90
2813 3359 1.565390 CCATTGGAGGCCCAGACAGA 61.565 60.000 0.00 0.00 44.60 3.41
2814 3360 1.077212 CCATTGGAGGCCCAGACAG 60.077 63.158 0.00 0.00 44.60 3.51
2815 3361 3.089838 CCATTGGAGGCCCAGACA 58.910 61.111 0.00 0.00 44.60 3.41
2823 3369 1.225704 GGTCAGGAGCCATTGGAGG 59.774 63.158 6.95 0.00 0.00 4.30
2824 3370 1.153289 CGGTCAGGAGCCATTGGAG 60.153 63.158 6.95 0.00 0.00 3.86
2825 3371 1.899437 GACGGTCAGGAGCCATTGGA 61.899 60.000 6.95 0.00 0.00 3.53
2826 3372 1.450312 GACGGTCAGGAGCCATTGG 60.450 63.158 2.62 0.00 0.00 3.16
2827 3373 0.321564 TTGACGGTCAGGAGCCATTG 60.322 55.000 11.14 0.00 0.00 2.82
2828 3374 0.400213 TTTGACGGTCAGGAGCCATT 59.600 50.000 11.14 0.00 0.00 3.16
2829 3375 0.620556 ATTTGACGGTCAGGAGCCAT 59.379 50.000 11.14 0.00 0.00 4.40
2830 3376 1.271856 TATTTGACGGTCAGGAGCCA 58.728 50.000 11.14 0.00 0.00 4.75
2831 3377 2.396590 TTATTTGACGGTCAGGAGCC 57.603 50.000 11.14 0.00 0.00 4.70
2832 3378 5.758296 TGATATTTATTTGACGGTCAGGAGC 59.242 40.000 11.14 0.00 0.00 4.70
2833 3379 7.413475 CTGATATTTATTTGACGGTCAGGAG 57.587 40.000 11.14 0.00 0.00 3.69
2835 3381 6.545504 CCTGATATTTATTTGACGGTCAGG 57.454 41.667 11.14 3.95 43.65 3.86
2836 3382 6.986817 AGACCTGATATTTATTTGACGGTCAG 59.013 38.462 11.14 0.00 40.52 3.51
2837 3383 6.761242 CAGACCTGATATTTATTTGACGGTCA 59.239 38.462 6.76 6.76 40.52 4.02
2838 3384 6.984474 TCAGACCTGATATTTATTTGACGGTC 59.016 38.462 0.00 0.00 38.86 4.79
2839 3385 6.884832 TCAGACCTGATATTTATTTGACGGT 58.115 36.000 0.00 0.00 34.14 4.83
2840 3386 7.710907 TCTTCAGACCTGATATTTATTTGACGG 59.289 37.037 0.01 0.00 39.64 4.79
2841 3387 8.648557 TCTTCAGACCTGATATTTATTTGACG 57.351 34.615 0.01 0.00 39.64 4.35
2880 3426 6.069705 TGGGAATCTAACTACGGGATTTTT 57.930 37.500 0.00 0.00 30.98 1.94
2881 3427 5.703730 TGGGAATCTAACTACGGGATTTT 57.296 39.130 0.00 0.00 30.98 1.82
2882 3428 5.607171 AGATGGGAATCTAACTACGGGATTT 59.393 40.000 0.00 0.00 30.98 2.17
2883 3429 5.012148 CAGATGGGAATCTAACTACGGGATT 59.988 44.000 0.00 0.00 33.13 3.01
2884 3430 4.528596 CAGATGGGAATCTAACTACGGGAT 59.471 45.833 0.00 0.00 0.00 3.85
2885 3431 3.895656 CAGATGGGAATCTAACTACGGGA 59.104 47.826 0.00 0.00 0.00 5.14
2886 3432 3.895656 TCAGATGGGAATCTAACTACGGG 59.104 47.826 0.00 0.00 0.00 5.28
2887 3433 5.531122 TTCAGATGGGAATCTAACTACGG 57.469 43.478 0.00 0.00 0.00 4.02
2888 3434 7.041780 CCAATTTCAGATGGGAATCTAACTACG 60.042 40.741 0.00 0.00 32.87 3.51
2889 3435 8.159344 CCAATTTCAGATGGGAATCTAACTAC 57.841 38.462 0.00 0.00 32.87 2.73
2901 3447 3.212685 GAGAGAGCCCAATTTCAGATGG 58.787 50.000 0.00 0.00 36.42 3.51
2902 3448 3.878103 CTGAGAGAGCCCAATTTCAGATG 59.122 47.826 0.00 0.00 35.28 2.90
2903 3449 3.779183 TCTGAGAGAGCCCAATTTCAGAT 59.221 43.478 0.00 0.00 36.93 2.90
2904 3450 3.176411 TCTGAGAGAGCCCAATTTCAGA 58.824 45.455 0.00 0.00 38.84 3.27
2905 3451 3.533547 CTCTGAGAGAGCCCAATTTCAG 58.466 50.000 2.60 0.00 35.30 3.02
2906 3452 3.623906 CTCTGAGAGAGCCCAATTTCA 57.376 47.619 2.60 0.00 35.30 2.69
2916 3462 1.820519 AGTTGCTGAGCTCTGAGAGAG 59.179 52.381 23.35 8.38 45.04 3.20
2917 3463 1.921982 AGTTGCTGAGCTCTGAGAGA 58.078 50.000 23.35 3.59 0.00 3.10
2918 3464 2.737783 CAAAGTTGCTGAGCTCTGAGAG 59.262 50.000 23.35 4.80 0.00 3.20
2919 3465 2.549563 CCAAAGTTGCTGAGCTCTGAGA 60.550 50.000 23.35 8.31 0.00 3.27
2920 3466 1.805345 CCAAAGTTGCTGAGCTCTGAG 59.195 52.381 23.35 10.60 0.00 3.35
2921 3467 1.417517 TCCAAAGTTGCTGAGCTCTGA 59.582 47.619 23.35 6.71 0.00 3.27
2922 3468 1.534595 GTCCAAAGTTGCTGAGCTCTG 59.465 52.381 16.19 15.96 0.00 3.35
2923 3469 1.544314 GGTCCAAAGTTGCTGAGCTCT 60.544 52.381 16.19 1.13 0.00 4.09
2924 3470 0.877743 GGTCCAAAGTTGCTGAGCTC 59.122 55.000 6.82 6.82 0.00 4.09
2925 3471 0.886490 CGGTCCAAAGTTGCTGAGCT 60.886 55.000 5.83 0.00 0.00 4.09
2926 3472 1.166531 ACGGTCCAAAGTTGCTGAGC 61.167 55.000 0.00 0.00 0.00 4.26
2927 3473 0.868406 GACGGTCCAAAGTTGCTGAG 59.132 55.000 0.00 0.00 0.00 3.35
2928 3474 0.179234 TGACGGTCCAAAGTTGCTGA 59.821 50.000 5.55 0.00 0.00 4.26
2929 3475 0.588252 CTGACGGTCCAAAGTTGCTG 59.412 55.000 5.55 0.00 0.00 4.41
2930 3476 0.468226 TCTGACGGTCCAAAGTTGCT 59.532 50.000 5.55 0.00 0.00 3.91
2931 3477 1.464997 GATCTGACGGTCCAAAGTTGC 59.535 52.381 5.55 0.00 0.00 4.17
2932 3478 2.996621 GAGATCTGACGGTCCAAAGTTG 59.003 50.000 0.00 0.00 0.00 3.16
2933 3479 2.352814 CGAGATCTGACGGTCCAAAGTT 60.353 50.000 0.00 0.00 0.00 2.66
2934 3480 1.202582 CGAGATCTGACGGTCCAAAGT 59.797 52.381 0.00 0.00 0.00 2.66
2935 3481 1.472878 TCGAGATCTGACGGTCCAAAG 59.527 52.381 0.00 0.00 0.00 2.77
2936 3482 1.472878 CTCGAGATCTGACGGTCCAAA 59.527 52.381 6.58 0.00 0.00 3.28
2937 3483 1.095600 CTCGAGATCTGACGGTCCAA 58.904 55.000 6.58 0.00 0.00 3.53
2938 3484 1.377366 GCTCGAGATCTGACGGTCCA 61.377 60.000 18.75 0.00 0.00 4.02
2939 3485 1.098712 AGCTCGAGATCTGACGGTCC 61.099 60.000 18.75 0.00 0.00 4.46
2940 3486 0.736053 AAGCTCGAGATCTGACGGTC 59.264 55.000 18.75 0.00 0.00 4.79
2941 3487 0.453793 CAAGCTCGAGATCTGACGGT 59.546 55.000 18.75 0.00 0.00 4.83
2942 3488 0.735471 TCAAGCTCGAGATCTGACGG 59.265 55.000 18.75 0.00 0.00 4.79
2943 3489 2.383450 CATCAAGCTCGAGATCTGACG 58.617 52.381 18.75 5.62 0.00 4.35
2944 3490 2.126467 GCATCAAGCTCGAGATCTGAC 58.874 52.381 18.75 2.66 41.15 3.51
2945 3491 1.268948 CGCATCAAGCTCGAGATCTGA 60.269 52.381 18.75 16.21 42.61 3.27
2946 3492 1.130140 CGCATCAAGCTCGAGATCTG 58.870 55.000 18.75 11.28 42.61 2.90
2947 3493 1.028130 TCGCATCAAGCTCGAGATCT 58.972 50.000 18.75 0.83 42.61 2.75
2948 3494 2.063156 ATCGCATCAAGCTCGAGATC 57.937 50.000 18.75 0.00 42.61 2.75
2949 3495 2.035704 AGAATCGCATCAAGCTCGAGAT 59.964 45.455 18.75 7.13 42.61 2.75
2950 3496 1.406898 AGAATCGCATCAAGCTCGAGA 59.593 47.619 18.75 0.00 42.61 4.04
2951 3497 1.850377 AGAATCGCATCAAGCTCGAG 58.150 50.000 8.45 8.45 42.61 4.04
2952 3498 2.860194 GCTAGAATCGCATCAAGCTCGA 60.860 50.000 0.00 0.00 42.61 4.04
2953 3499 1.455030 GCTAGAATCGCATCAAGCTCG 59.545 52.381 0.00 0.00 42.61 5.03
2954 3500 1.797635 GGCTAGAATCGCATCAAGCTC 59.202 52.381 0.00 0.00 42.61 4.09
2955 3501 1.139654 TGGCTAGAATCGCATCAAGCT 59.860 47.619 0.00 0.00 42.61 3.74
2956 3502 1.586422 TGGCTAGAATCGCATCAAGC 58.414 50.000 0.00 0.00 40.87 4.01
2957 3503 3.432592 CAGATGGCTAGAATCGCATCAAG 59.567 47.826 0.00 0.00 0.00 3.02
2958 3504 3.070015 TCAGATGGCTAGAATCGCATCAA 59.930 43.478 0.00 0.00 0.00 2.57
2959 3505 2.629617 TCAGATGGCTAGAATCGCATCA 59.370 45.455 0.00 0.00 0.00 3.07
2960 3506 2.992543 GTCAGATGGCTAGAATCGCATC 59.007 50.000 0.00 0.00 0.00 3.91
2961 3507 2.632028 AGTCAGATGGCTAGAATCGCAT 59.368 45.455 0.00 0.00 0.00 4.73
2962 3508 2.034878 AGTCAGATGGCTAGAATCGCA 58.965 47.619 0.00 0.00 0.00 5.10
2963 3509 2.402305 CAGTCAGATGGCTAGAATCGC 58.598 52.381 0.00 0.00 0.00 4.58
2964 3510 2.288702 CCCAGTCAGATGGCTAGAATCG 60.289 54.545 0.00 0.00 39.17 3.34
2965 3511 2.038295 CCCCAGTCAGATGGCTAGAATC 59.962 54.545 0.00 0.00 39.17 2.52
2966 3512 2.053244 CCCCAGTCAGATGGCTAGAAT 58.947 52.381 0.00 0.00 39.17 2.40
2967 3513 1.500474 CCCCAGTCAGATGGCTAGAA 58.500 55.000 0.00 0.00 39.17 2.10
2968 3514 1.050988 GCCCCAGTCAGATGGCTAGA 61.051 60.000 0.00 0.00 40.77 2.43
2969 3515 1.449353 GCCCCAGTCAGATGGCTAG 59.551 63.158 0.00 0.00 40.77 3.42
2970 3516 3.647367 GCCCCAGTCAGATGGCTA 58.353 61.111 0.00 0.00 40.77 3.93
2972 3518 2.191641 GAGCCCCAGTCAGATGGC 59.808 66.667 0.00 0.00 44.35 4.40
2973 3519 1.997311 TGGAGCCCCAGTCAGATGG 60.997 63.158 0.00 0.00 37.58 3.51
2974 3520 3.731547 TGGAGCCCCAGTCAGATG 58.268 61.111 0.00 0.00 37.58 2.90
2982 3528 1.229951 AGGAATCACTGGAGCCCCA 60.230 57.895 0.00 0.00 40.95 4.96
2983 3529 1.225704 CAGGAATCACTGGAGCCCC 59.774 63.158 0.00 0.00 34.84 5.80
2984 3530 0.107459 GTCAGGAATCACTGGAGCCC 60.107 60.000 0.00 0.00 38.98 5.19
2985 3531 0.107459 GGTCAGGAATCACTGGAGCC 60.107 60.000 0.00 0.00 38.98 4.70
2986 3532 0.460987 CGGTCAGGAATCACTGGAGC 60.461 60.000 0.00 0.00 38.98 4.70
2987 3533 0.898320 ACGGTCAGGAATCACTGGAG 59.102 55.000 0.00 0.00 38.98 3.86
2988 3534 0.895530 GACGGTCAGGAATCACTGGA 59.104 55.000 2.62 0.00 38.98 3.86
2989 3535 0.608130 TGACGGTCAGGAATCACTGG 59.392 55.000 6.76 0.00 38.98 4.00
2990 3536 1.546029 TCTGACGGTCAGGAATCACTG 59.454 52.381 31.61 9.62 44.39 3.66
2991 3537 1.924731 TCTGACGGTCAGGAATCACT 58.075 50.000 31.61 0.00 44.39 3.41
2992 3538 2.969628 ATCTGACGGTCAGGAATCAC 57.030 50.000 31.61 0.00 44.39 3.06
2993 3539 5.614324 ATTTATCTGACGGTCAGGAATCA 57.386 39.130 31.61 16.66 44.39 2.57
2994 3540 7.378966 TGATATTTATCTGACGGTCAGGAATC 58.621 38.462 31.61 23.33 44.39 2.52
2995 3541 7.303182 TGATATTTATCTGACGGTCAGGAAT 57.697 36.000 31.61 27.32 44.39 3.01
2996 3542 6.724893 TGATATTTATCTGACGGTCAGGAA 57.275 37.500 31.61 23.78 44.39 3.36
2997 3543 6.332735 CTGATATTTATCTGACGGTCAGGA 57.667 41.667 31.61 20.85 44.39 3.86
2998 3544 5.473931 CCTGATATTTATCTGACGGTCAGG 58.526 45.833 31.61 16.94 44.39 3.86
2999 3545 6.015856 AGACCTGATATTTATCTGACGGTCAG 60.016 42.308 28.09 28.09 45.59 3.51
3000 3546 5.833667 AGACCTGATATTTATCTGACGGTCA 59.166 40.000 10.88 10.88 38.03 4.02
3001 3547 6.016192 TCAGACCTGATATTTATCTGACGGTC 60.016 42.308 0.00 0.00 40.59 4.79
3002 3548 5.833667 TCAGACCTGATATTTATCTGACGGT 59.166 40.000 6.15 4.45 40.59 4.83
3003 3549 6.332735 TCAGACCTGATATTTATCTGACGG 57.667 41.667 6.15 1.97 40.59 4.79
3004 3550 7.652727 TCTTCAGACCTGATATTTATCTGACG 58.347 38.462 0.01 1.34 44.09 4.35
3005 3551 9.823647 TTTCTTCAGACCTGATATTTATCTGAC 57.176 33.333 0.01 1.84 44.09 3.51
3041 3587 9.554395 CCAAAATCCCTAAGTGTATTTGTTTTT 57.446 29.630 0.00 0.00 0.00 1.94
3042 3588 7.659799 GCCAAAATCCCTAAGTGTATTTGTTTT 59.340 33.333 0.00 0.00 0.00 2.43
3043 3589 7.158697 GCCAAAATCCCTAAGTGTATTTGTTT 58.841 34.615 0.00 0.00 0.00 2.83
3044 3590 6.295632 GGCCAAAATCCCTAAGTGTATTTGTT 60.296 38.462 0.00 0.00 0.00 2.83
3045 3591 5.186992 GGCCAAAATCCCTAAGTGTATTTGT 59.813 40.000 0.00 0.00 0.00 2.83
3046 3592 5.422012 AGGCCAAAATCCCTAAGTGTATTTG 59.578 40.000 5.01 0.00 0.00 2.32
3047 3593 5.589831 AGGCCAAAATCCCTAAGTGTATTT 58.410 37.500 5.01 0.00 0.00 1.40
3048 3594 5.206905 AGGCCAAAATCCCTAAGTGTATT 57.793 39.130 5.01 0.00 0.00 1.89
3049 3595 4.881157 AGGCCAAAATCCCTAAGTGTAT 57.119 40.909 5.01 0.00 0.00 2.29
3050 3596 4.668138 AAGGCCAAAATCCCTAAGTGTA 57.332 40.909 5.01 0.00 0.00 2.90
3051 3597 3.542969 AAGGCCAAAATCCCTAAGTGT 57.457 42.857 5.01 0.00 0.00 3.55
3052 3598 5.300286 CAGATAAGGCCAAAATCCCTAAGTG 59.700 44.000 5.01 0.00 0.00 3.16
3053 3599 5.449553 CAGATAAGGCCAAAATCCCTAAGT 58.550 41.667 5.01 0.00 0.00 2.24
3054 3600 4.829492 CCAGATAAGGCCAAAATCCCTAAG 59.171 45.833 5.01 0.00 0.00 2.18
3055 3601 4.803452 CCAGATAAGGCCAAAATCCCTAA 58.197 43.478 5.01 0.00 0.00 2.69
3056 3602 4.453480 CCAGATAAGGCCAAAATCCCTA 57.547 45.455 5.01 0.00 0.00 3.53
3057 3603 3.319031 CCAGATAAGGCCAAAATCCCT 57.681 47.619 5.01 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.