Multiple sequence alignment - TraesCS2A01G466300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G466300 chr2A 100.000 2366 0 0 1 2366 711032152 711034517 0.000000e+00 4370.0
1 TraesCS2A01G466300 chr2A 92.329 730 35 11 1657 2366 55529761 55529033 0.000000e+00 1018.0
2 TraesCS2A01G466300 chr2A 83.763 388 59 4 983 1368 711021244 711021629 4.810000e-97 364.0
3 TraesCS2A01G466300 chr2A 100.000 28 0 0 747 774 711056304 711056331 4.000000e-03 52.8
4 TraesCS2A01G466300 chr2B 93.922 872 39 5 788 1656 686040853 686041713 0.000000e+00 1304.0
5 TraesCS2A01G466300 chr2B 94.534 494 25 1 875 1368 686808136 686808627 0.000000e+00 761.0
6 TraesCS2A01G466300 chr2B 86.047 387 52 2 983 1368 686449715 686450100 4.700000e-112 414.0
7 TraesCS2A01G466300 chr2B 85.788 387 53 2 983 1368 685605567 685605952 2.190000e-110 409.0
8 TraesCS2A01G466300 chr2B 85.052 388 55 3 983 1369 685763190 685763575 2.200000e-105 392.0
9 TraesCS2A01G466300 chr2B 85.039 381 57 0 987 1367 685518141 685518521 2.850000e-104 388.0
10 TraesCS2A01G466300 chr2B 84.777 381 58 0 987 1367 685502859 685503239 1.330000e-102 383.0
11 TraesCS2A01G466300 chr2B 86.567 335 45 0 1034 1368 685280087 685280421 1.030000e-98 370.0
12 TraesCS2A01G466300 chr2B 90.909 242 19 3 52 292 686791891 686792130 2.930000e-84 322.0
13 TraesCS2A01G466300 chr2B 94.545 110 6 0 554 663 686807669 686807778 1.120000e-38 171.0
14 TraesCS2A01G466300 chr2B 86.822 129 14 3 379 505 686807555 686807682 8.820000e-30 141.0
15 TraesCS2A01G466300 chr2B 81.119 143 6 9 721 842 686807989 686808131 6.960000e-16 95.3
16 TraesCS2A01G466300 chr6B 94.536 732 21 13 1653 2366 27174870 27174140 0.000000e+00 1112.0
17 TraesCS2A01G466300 chr3B 94.223 727 25 8 1657 2366 821069635 821068909 0.000000e+00 1094.0
18 TraesCS2A01G466300 chr5B 93.844 731 22 14 1656 2366 523502765 523503492 0.000000e+00 1079.0
19 TraesCS2A01G466300 chr5A 93.517 725 28 9 1661 2366 690022284 690023008 0.000000e+00 1061.0
20 TraesCS2A01G466300 chr7D 94.895 666 19 10 1661 2311 500938419 500937754 0.000000e+00 1027.0
21 TraesCS2A01G466300 chr7B 92.909 691 24 13 1657 2332 43553674 43554354 0.000000e+00 981.0
22 TraesCS2A01G466300 chr6A 96.486 370 11 1 1969 2336 76623738 76624107 5.590000e-171 610.0
23 TraesCS2A01G466300 chr6A 97.152 316 6 3 1657 1970 76623300 76623614 4.480000e-147 531.0
24 TraesCS2A01G466300 chr6A 84.244 311 29 12 1657 1958 92062604 92062903 3.850000e-73 285.0
25 TraesCS2A01G466300 chr6A 84.228 298 35 10 2019 2309 92062988 92063280 1.790000e-71 279.0
26 TraesCS2A01G466300 chr6D 92.754 69 5 0 2297 2365 76581631 76581699 1.500000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G466300 chr2A 711032152 711034517 2365 False 4370.000 4370 100.000 1 2366 1 chr2A.!!$F2 2365
1 TraesCS2A01G466300 chr2A 55529033 55529761 728 True 1018.000 1018 92.329 1657 2366 1 chr2A.!!$R1 709
2 TraesCS2A01G466300 chr2B 686040853 686041713 860 False 1304.000 1304 93.922 788 1656 1 chr2B.!!$F6 868
3 TraesCS2A01G466300 chr2B 686807555 686808627 1072 False 292.075 761 89.255 379 1368 4 chr2B.!!$F9 989
4 TraesCS2A01G466300 chr6B 27174140 27174870 730 True 1112.000 1112 94.536 1653 2366 1 chr6B.!!$R1 713
5 TraesCS2A01G466300 chr3B 821068909 821069635 726 True 1094.000 1094 94.223 1657 2366 1 chr3B.!!$R1 709
6 TraesCS2A01G466300 chr5B 523502765 523503492 727 False 1079.000 1079 93.844 1656 2366 1 chr5B.!!$F1 710
7 TraesCS2A01G466300 chr5A 690022284 690023008 724 False 1061.000 1061 93.517 1661 2366 1 chr5A.!!$F1 705
8 TraesCS2A01G466300 chr7D 500937754 500938419 665 True 1027.000 1027 94.895 1661 2311 1 chr7D.!!$R1 650
9 TraesCS2A01G466300 chr7B 43553674 43554354 680 False 981.000 981 92.909 1657 2332 1 chr7B.!!$F1 675
10 TraesCS2A01G466300 chr6A 76623300 76624107 807 False 570.500 610 96.819 1657 2336 2 chr6A.!!$F1 679
11 TraesCS2A01G466300 chr6A 92062604 92063280 676 False 282.000 285 84.236 1657 2309 2 chr6A.!!$F2 652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.035439 GGATCGCCTTTCACCTCCAA 60.035 55.0 0.0 0.0 0.00 3.53 F
615 616 0.108992 TGGTGATACGCAACTCGACC 60.109 55.0 0.0 0.0 41.67 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1283 1464 0.390866 CAGCCACAGCATCGTCTTCT 60.391 55.0 0.0 0.0 43.56 2.85 R
1589 1772 0.992072 CGACATACACACAAGCTCCG 59.008 55.0 0.0 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.849543 AAACAGGTAATATCTACCTTACTCCA 57.150 34.615 11.65 0.00 45.06 3.86
37 38 9.448587 AAACAGGTAATATCTACCTTACTCCAT 57.551 33.333 11.65 0.00 45.06 3.41
38 39 8.653036 ACAGGTAATATCTACCTTACTCCATC 57.347 38.462 11.65 0.00 45.06 3.51
39 40 7.674772 ACAGGTAATATCTACCTTACTCCATCC 59.325 40.741 11.65 0.00 45.06 3.51
40 41 6.890814 AGGTAATATCTACCTTACTCCATCCG 59.109 42.308 9.53 0.00 45.06 4.18
41 42 6.662663 GGTAATATCTACCTTACTCCATCCGT 59.337 42.308 6.77 0.00 34.82 4.69
42 43 7.178097 GGTAATATCTACCTTACTCCATCCGTT 59.822 40.741 6.77 0.00 34.82 4.44
43 44 6.837471 ATATCTACCTTACTCCATCCGTTC 57.163 41.667 0.00 0.00 0.00 3.95
44 45 3.294214 TCTACCTTACTCCATCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
45 46 1.946984 ACCTTACTCCATCCGTTCCA 58.053 50.000 0.00 0.00 0.00 3.53
46 47 2.478292 ACCTTACTCCATCCGTTCCAT 58.522 47.619 0.00 0.00 0.00 3.41
47 48 3.649843 ACCTTACTCCATCCGTTCCATA 58.350 45.455 0.00 0.00 0.00 2.74
48 49 4.035112 ACCTTACTCCATCCGTTCCATAA 58.965 43.478 0.00 0.00 0.00 1.90
49 50 4.658901 ACCTTACTCCATCCGTTCCATAAT 59.341 41.667 0.00 0.00 0.00 1.28
50 51 5.842328 ACCTTACTCCATCCGTTCCATAATA 59.158 40.000 0.00 0.00 0.00 0.98
51 52 6.500751 ACCTTACTCCATCCGTTCCATAATAT 59.499 38.462 0.00 0.00 0.00 1.28
52 53 7.676893 ACCTTACTCCATCCGTTCCATAATATA 59.323 37.037 0.00 0.00 0.00 0.86
53 54 8.198109 CCTTACTCCATCCGTTCCATAATATAG 58.802 40.741 0.00 0.00 0.00 1.31
54 55 8.888836 TTACTCCATCCGTTCCATAATATAGA 57.111 34.615 0.00 0.00 0.00 1.98
55 56 7.792364 ACTCCATCCGTTCCATAATATAGAA 57.208 36.000 0.00 0.00 0.00 2.10
56 57 8.380742 ACTCCATCCGTTCCATAATATAGAAT 57.619 34.615 0.00 0.00 0.00 2.40
57 58 9.488762 ACTCCATCCGTTCCATAATATAGAATA 57.511 33.333 0.00 0.00 0.00 1.75
58 59 9.751542 CTCCATCCGTTCCATAATATAGAATAC 57.248 37.037 0.00 0.00 0.00 1.89
59 60 9.488762 TCCATCCGTTCCATAATATAGAATACT 57.511 33.333 0.00 0.00 0.00 2.12
73 74 6.919775 ATAGAATACTTTAGTGGATCGCCT 57.080 37.500 0.00 0.00 34.31 5.52
74 75 5.615925 AGAATACTTTAGTGGATCGCCTT 57.384 39.130 0.00 0.00 34.31 4.35
75 76 5.990668 AGAATACTTTAGTGGATCGCCTTT 58.009 37.500 0.00 0.00 34.31 3.11
76 77 6.049790 AGAATACTTTAGTGGATCGCCTTTC 58.950 40.000 0.00 0.00 34.31 2.62
77 78 3.695830 ACTTTAGTGGATCGCCTTTCA 57.304 42.857 0.00 0.00 34.31 2.69
78 79 3.335579 ACTTTAGTGGATCGCCTTTCAC 58.664 45.455 0.00 0.00 34.31 3.18
79 80 2.396590 TTAGTGGATCGCCTTTCACC 57.603 50.000 0.00 0.00 34.31 4.02
80 81 1.568504 TAGTGGATCGCCTTTCACCT 58.431 50.000 0.00 0.00 34.31 4.00
81 82 0.250513 AGTGGATCGCCTTTCACCTC 59.749 55.000 0.00 0.00 34.31 3.85
82 83 0.744771 GTGGATCGCCTTTCACCTCC 60.745 60.000 0.00 0.00 34.31 4.30
83 84 1.198094 TGGATCGCCTTTCACCTCCA 61.198 55.000 0.00 0.00 34.31 3.86
84 85 0.035439 GGATCGCCTTTCACCTCCAA 60.035 55.000 0.00 0.00 0.00 3.53
85 86 1.613255 GGATCGCCTTTCACCTCCAAA 60.613 52.381 0.00 0.00 0.00 3.28
86 87 1.468914 GATCGCCTTTCACCTCCAAAC 59.531 52.381 0.00 0.00 0.00 2.93
87 88 0.472471 TCGCCTTTCACCTCCAAACT 59.528 50.000 0.00 0.00 0.00 2.66
88 89 1.133915 TCGCCTTTCACCTCCAAACTT 60.134 47.619 0.00 0.00 0.00 2.66
89 90 1.266989 CGCCTTTCACCTCCAAACTTC 59.733 52.381 0.00 0.00 0.00 3.01
90 91 2.587522 GCCTTTCACCTCCAAACTTCT 58.412 47.619 0.00 0.00 0.00 2.85
91 92 3.751518 GCCTTTCACCTCCAAACTTCTA 58.248 45.455 0.00 0.00 0.00 2.10
92 93 3.502595 GCCTTTCACCTCCAAACTTCTAC 59.497 47.826 0.00 0.00 0.00 2.59
93 94 4.714632 CCTTTCACCTCCAAACTTCTACA 58.285 43.478 0.00 0.00 0.00 2.74
94 95 5.316987 CCTTTCACCTCCAAACTTCTACAT 58.683 41.667 0.00 0.00 0.00 2.29
95 96 5.770162 CCTTTCACCTCCAAACTTCTACATT 59.230 40.000 0.00 0.00 0.00 2.71
96 97 6.265422 CCTTTCACCTCCAAACTTCTACATTT 59.735 38.462 0.00 0.00 0.00 2.32
97 98 7.447238 CCTTTCACCTCCAAACTTCTACATTTA 59.553 37.037 0.00 0.00 0.00 1.40
98 99 8.934023 TTTCACCTCCAAACTTCTACATTTAT 57.066 30.769 0.00 0.00 0.00 1.40
133 134 8.006298 ACAATGAACTTGTGTTTATTTCAGGA 57.994 30.769 0.00 0.00 46.37 3.86
134 135 8.474025 ACAATGAACTTGTGTTTATTTCAGGAA 58.526 29.630 0.00 0.00 46.37 3.36
135 136 9.311916 CAATGAACTTGTGTTTATTTCAGGAAA 57.688 29.630 0.00 0.00 39.38 3.13
136 137 9.883142 AATGAACTTGTGTTTATTTCAGGAAAA 57.117 25.926 0.00 0.00 38.63 2.29
138 139 9.311916 TGAACTTGTGTTTATTTCAGGAAAATG 57.688 29.630 0.00 0.00 36.03 2.32
139 140 9.313118 GAACTTGTGTTTATTTCAGGAAAATGT 57.687 29.630 0.00 0.00 36.03 2.71
141 142 9.744468 ACTTGTGTTTATTTCAGGAAAATGTAC 57.256 29.630 0.00 0.00 38.08 2.90
142 143 9.965824 CTTGTGTTTATTTCAGGAAAATGTACT 57.034 29.630 0.00 0.00 38.08 2.73
143 144 9.959749 TTGTGTTTATTTCAGGAAAATGTACTC 57.040 29.630 0.00 0.00 38.08 2.59
144 145 8.573035 TGTGTTTATTTCAGGAAAATGTACTCC 58.427 33.333 0.00 0.00 38.08 3.85
145 146 8.793592 GTGTTTATTTCAGGAAAATGTACTCCT 58.206 33.333 0.00 0.00 43.12 3.69
146 147 9.362151 TGTTTATTTCAGGAAAATGTACTCCTT 57.638 29.630 0.00 0.00 40.22 3.36
147 148 9.626045 GTTTATTTCAGGAAAATGTACTCCTTG 57.374 33.333 0.00 0.00 40.22 3.61
148 149 9.581289 TTTATTTCAGGAAAATGTACTCCTTGA 57.419 29.630 0.00 0.00 40.22 3.02
149 150 9.581289 TTATTTCAGGAAAATGTACTCCTTGAA 57.419 29.630 0.00 4.79 40.22 2.69
150 151 7.889873 TTTCAGGAAAATGTACTCCTTGAAA 57.110 32.000 15.00 15.00 40.22 2.69
151 152 7.889873 TTCAGGAAAATGTACTCCTTGAAAA 57.110 32.000 0.00 0.00 40.22 2.29
152 153 8.477419 TTCAGGAAAATGTACTCCTTGAAAAT 57.523 30.769 0.00 0.00 40.22 1.82
153 154 8.477419 TCAGGAAAATGTACTCCTTGAAAATT 57.523 30.769 0.00 0.00 40.22 1.82
154 155 8.923270 TCAGGAAAATGTACTCCTTGAAAATTT 58.077 29.630 0.00 0.00 40.22 1.82
155 156 8.981647 CAGGAAAATGTACTCCTTGAAAATTTG 58.018 33.333 0.00 0.00 40.22 2.32
156 157 7.657354 AGGAAAATGTACTCCTTGAAAATTTGC 59.343 33.333 0.00 0.00 39.08 3.68
157 158 7.440856 GGAAAATGTACTCCTTGAAAATTTGCA 59.559 33.333 0.00 0.00 0.00 4.08
158 159 7.951530 AAATGTACTCCTTGAAAATTTGCAG 57.048 32.000 0.00 0.00 0.00 4.41
159 160 6.655078 ATGTACTCCTTGAAAATTTGCAGT 57.345 33.333 0.00 0.00 0.00 4.40
160 161 6.072112 TGTACTCCTTGAAAATTTGCAGTC 57.928 37.500 0.00 0.00 0.00 3.51
161 162 5.592282 TGTACTCCTTGAAAATTTGCAGTCA 59.408 36.000 0.00 0.00 0.00 3.41
162 163 5.596836 ACTCCTTGAAAATTTGCAGTCAA 57.403 34.783 0.00 1.25 0.00 3.18
163 164 5.351458 ACTCCTTGAAAATTTGCAGTCAAC 58.649 37.500 0.00 0.00 30.75 3.18
164 165 5.127682 ACTCCTTGAAAATTTGCAGTCAACT 59.872 36.000 0.00 0.00 30.75 3.16
165 166 5.350633 TCCTTGAAAATTTGCAGTCAACTG 58.649 37.500 5.77 5.77 46.40 3.16
166 167 5.126869 TCCTTGAAAATTTGCAGTCAACTGA 59.873 36.000 14.20 0.00 46.59 3.41
167 168 5.811613 CCTTGAAAATTTGCAGTCAACTGAA 59.188 36.000 14.20 0.00 46.59 3.02
168 169 6.480981 CCTTGAAAATTTGCAGTCAACTGAAT 59.519 34.615 14.20 3.18 46.59 2.57
169 170 7.652909 CCTTGAAAATTTGCAGTCAACTGAATA 59.347 33.333 14.20 0.00 46.59 1.75
170 171 8.939201 TTGAAAATTTGCAGTCAACTGAATAA 57.061 26.923 14.20 4.76 46.59 1.40
171 172 9.545105 TTGAAAATTTGCAGTCAACTGAATAAT 57.455 25.926 14.20 6.66 46.59 1.28
176 177 9.630098 AATTTGCAGTCAACTGAATAATACTTG 57.370 29.630 14.20 0.00 46.59 3.16
177 178 7.744087 TTGCAGTCAACTGAATAATACTTGT 57.256 32.000 14.20 0.00 46.59 3.16
178 179 7.744087 TGCAGTCAACTGAATAATACTTGTT 57.256 32.000 14.20 0.00 46.59 2.83
179 180 8.165239 TGCAGTCAACTGAATAATACTTGTTT 57.835 30.769 14.20 0.00 46.59 2.83
180 181 8.075574 TGCAGTCAACTGAATAATACTTGTTTG 58.924 33.333 14.20 0.00 46.59 2.93
181 182 8.076178 GCAGTCAACTGAATAATACTTGTTTGT 58.924 33.333 14.20 0.00 46.59 2.83
185 186 9.787435 TCAACTGAATAATACTTGTTTGTAGGT 57.213 29.630 0.00 0.00 0.00 3.08
187 188 8.475331 ACTGAATAATACTTGTTTGTAGGTCG 57.525 34.615 0.00 0.00 0.00 4.79
188 189 8.308931 ACTGAATAATACTTGTTTGTAGGTCGA 58.691 33.333 0.00 0.00 0.00 4.20
189 190 8.697846 TGAATAATACTTGTTTGTAGGTCGAG 57.302 34.615 0.00 0.00 0.00 4.04
190 191 8.525316 TGAATAATACTTGTTTGTAGGTCGAGA 58.475 33.333 0.00 0.00 0.00 4.04
191 192 8.699283 AATAATACTTGTTTGTAGGTCGAGAC 57.301 34.615 0.00 0.00 0.00 3.36
202 203 3.896317 GTCGAGACCTTGAGCAACT 57.104 52.632 0.00 0.00 0.00 3.16
204 205 3.299340 GTCGAGACCTTGAGCAACTAA 57.701 47.619 0.00 0.00 0.00 2.24
205 206 3.851098 GTCGAGACCTTGAGCAACTAAT 58.149 45.455 0.00 0.00 0.00 1.73
206 207 4.995124 GTCGAGACCTTGAGCAACTAATA 58.005 43.478 0.00 0.00 0.00 0.98
207 208 5.593010 GTCGAGACCTTGAGCAACTAATAT 58.407 41.667 0.00 0.00 0.00 1.28
208 209 6.043411 GTCGAGACCTTGAGCAACTAATATT 58.957 40.000 0.00 0.00 0.00 1.28
209 210 6.535508 GTCGAGACCTTGAGCAACTAATATTT 59.464 38.462 0.00 0.00 0.00 1.40
210 211 7.705325 GTCGAGACCTTGAGCAACTAATATTTA 59.295 37.037 0.00 0.00 0.00 1.40
211 212 8.421784 TCGAGACCTTGAGCAACTAATATTTAT 58.578 33.333 0.00 0.00 0.00 1.40
212 213 9.046296 CGAGACCTTGAGCAACTAATATTTATT 57.954 33.333 0.00 0.00 0.00 1.40
235 236 8.830201 ATTTAAATGTTAATTGAGCACTTGCA 57.170 26.923 3.62 0.00 45.16 4.08
236 237 8.830201 TTTAAATGTTAATTGAGCACTTGCAT 57.170 26.923 3.62 0.00 45.16 3.96
237 238 9.920133 TTTAAATGTTAATTGAGCACTTGCATA 57.080 25.926 3.62 0.00 45.16 3.14
238 239 9.571810 TTAAATGTTAATTGAGCACTTGCATAG 57.428 29.630 3.62 0.00 45.16 2.23
239 240 6.764308 ATGTTAATTGAGCACTTGCATAGT 57.236 33.333 3.62 0.00 45.16 2.12
240 241 6.573664 TGTTAATTGAGCACTTGCATAGTT 57.426 33.333 3.62 0.00 45.16 2.24
241 242 6.980593 TGTTAATTGAGCACTTGCATAGTTT 58.019 32.000 3.62 0.00 45.16 2.66
242 243 8.105097 TGTTAATTGAGCACTTGCATAGTTTA 57.895 30.769 3.62 0.00 45.16 2.01
243 244 8.236586 TGTTAATTGAGCACTTGCATAGTTTAG 58.763 33.333 3.62 0.00 45.16 1.85
244 245 8.450964 GTTAATTGAGCACTTGCATAGTTTAGA 58.549 33.333 3.62 0.00 45.16 2.10
245 246 6.674694 ATTGAGCACTTGCATAGTTTAGAG 57.325 37.500 3.62 0.00 45.16 2.43
246 247 5.405935 TGAGCACTTGCATAGTTTAGAGA 57.594 39.130 3.62 0.00 45.16 3.10
247 248 5.793817 TGAGCACTTGCATAGTTTAGAGAA 58.206 37.500 3.62 0.00 45.16 2.87
248 249 5.639506 TGAGCACTTGCATAGTTTAGAGAAC 59.360 40.000 3.62 0.00 45.16 3.01
249 250 5.551233 AGCACTTGCATAGTTTAGAGAACA 58.449 37.500 3.62 0.00 45.16 3.18
250 251 6.176183 AGCACTTGCATAGTTTAGAGAACAT 58.824 36.000 3.62 0.00 45.16 2.71
251 252 6.656693 AGCACTTGCATAGTTTAGAGAACATT 59.343 34.615 3.62 0.00 45.16 2.71
252 253 7.824289 AGCACTTGCATAGTTTAGAGAACATTA 59.176 33.333 3.62 0.00 45.16 1.90
253 254 8.119226 GCACTTGCATAGTTTAGAGAACATTAG 58.881 37.037 0.00 0.00 41.59 1.73
254 255 8.119226 CACTTGCATAGTTTAGAGAACATTAGC 58.881 37.037 0.00 0.00 33.85 3.09
255 256 7.824289 ACTTGCATAGTTTAGAGAACATTAGCA 59.176 33.333 0.00 0.00 31.29 3.49
256 257 8.560355 TTGCATAGTTTAGAGAACATTAGCAA 57.440 30.769 0.00 0.00 33.92 3.91
257 258 8.201554 TGCATAGTTTAGAGAACATTAGCAAG 57.798 34.615 0.00 0.00 0.00 4.01
258 259 7.824289 TGCATAGTTTAGAGAACATTAGCAAGT 59.176 33.333 0.00 0.00 0.00 3.16
259 260 8.669243 GCATAGTTTAGAGAACATTAGCAAGTT 58.331 33.333 0.00 0.00 0.00 2.66
260 261 9.979270 CATAGTTTAGAGAACATTAGCAAGTTG 57.021 33.333 0.00 0.00 0.00 3.16
261 262 9.944376 ATAGTTTAGAGAACATTAGCAAGTTGA 57.056 29.630 7.16 0.00 0.00 3.18
262 263 8.854614 AGTTTAGAGAACATTAGCAAGTTGAT 57.145 30.769 7.16 2.05 0.00 2.57
263 264 8.940952 AGTTTAGAGAACATTAGCAAGTTGATC 58.059 33.333 7.16 0.00 0.00 2.92
264 265 8.940952 GTTTAGAGAACATTAGCAAGTTGATCT 58.059 33.333 7.16 0.00 0.00 2.75
265 266 9.507329 TTTAGAGAACATTAGCAAGTTGATCTT 57.493 29.630 7.16 0.00 36.75 2.40
282 283 9.778741 AGTTGATCTTGAGATTAAAACTGTACA 57.221 29.630 12.77 0.00 34.57 2.90
283 284 9.813080 GTTGATCTTGAGATTAAAACTGTACAC 57.187 33.333 0.00 0.00 32.86 2.90
284 285 9.554395 TTGATCTTGAGATTAAAACTGTACACA 57.446 29.630 0.00 0.00 34.37 3.72
285 286 9.725019 TGATCTTGAGATTAAAACTGTACACAT 57.275 29.630 0.00 0.00 34.37 3.21
310 311 9.869757 ATTTTAATACCTAAAGTTGCATTGACC 57.130 29.630 0.00 0.00 31.12 4.02
311 312 8.644374 TTTAATACCTAAAGTTGCATTGACCT 57.356 30.769 0.00 0.00 0.00 3.85
312 313 9.742144 TTTAATACCTAAAGTTGCATTGACCTA 57.258 29.630 0.00 0.00 0.00 3.08
313 314 9.914834 TTAATACCTAAAGTTGCATTGACCTAT 57.085 29.630 0.00 0.00 0.00 2.57
314 315 8.823220 AATACCTAAAGTTGCATTGACCTATT 57.177 30.769 0.00 0.00 0.00 1.73
315 316 8.823220 ATACCTAAAGTTGCATTGACCTATTT 57.177 30.769 0.00 0.00 0.00 1.40
316 317 6.924111 ACCTAAAGTTGCATTGACCTATTTG 58.076 36.000 0.00 0.00 0.00 2.32
317 318 5.807011 CCTAAAGTTGCATTGACCTATTTGC 59.193 40.000 0.00 0.00 35.67 3.68
318 319 3.492421 AGTTGCATTGACCTATTTGCG 57.508 42.857 0.00 0.00 37.92 4.85
319 320 1.919918 GTTGCATTGACCTATTTGCGC 59.080 47.619 0.00 0.00 37.92 6.09
320 321 1.172175 TGCATTGACCTATTTGCGCA 58.828 45.000 5.66 5.66 37.92 6.09
321 322 1.543358 TGCATTGACCTATTTGCGCAA 59.457 42.857 21.02 21.02 37.92 4.85
322 323 2.166050 TGCATTGACCTATTTGCGCAAT 59.834 40.909 25.64 16.06 37.92 3.56
323 324 3.189285 GCATTGACCTATTTGCGCAATT 58.811 40.909 25.64 22.46 0.00 2.32
324 325 3.000523 GCATTGACCTATTTGCGCAATTG 59.999 43.478 25.64 16.05 0.00 2.32
325 326 3.932545 TTGACCTATTTGCGCAATTGT 57.067 38.095 25.64 17.69 0.00 2.71
326 327 5.339177 CATTGACCTATTTGCGCAATTGTA 58.661 37.500 25.64 15.65 0.00 2.41
327 328 4.614555 TGACCTATTTGCGCAATTGTAG 57.385 40.909 25.64 22.91 0.00 2.74
328 329 4.006989 TGACCTATTTGCGCAATTGTAGT 58.993 39.130 25.64 17.29 0.00 2.73
329 330 4.094294 TGACCTATTTGCGCAATTGTAGTC 59.906 41.667 25.64 23.96 0.00 2.59
330 331 4.261801 ACCTATTTGCGCAATTGTAGTCT 58.738 39.130 25.64 10.47 0.00 3.24
331 332 4.700213 ACCTATTTGCGCAATTGTAGTCTT 59.300 37.500 25.64 9.87 0.00 3.01
332 333 5.030295 CCTATTTGCGCAATTGTAGTCTTG 58.970 41.667 25.64 9.69 0.00 3.02
333 334 4.764679 ATTTGCGCAATTGTAGTCTTGA 57.235 36.364 25.64 4.20 0.00 3.02
334 335 4.764679 TTTGCGCAATTGTAGTCTTGAT 57.235 36.364 25.64 0.00 0.00 2.57
335 336 3.745332 TGCGCAATTGTAGTCTTGATG 57.255 42.857 8.16 0.00 0.00 3.07
336 337 2.419673 TGCGCAATTGTAGTCTTGATGG 59.580 45.455 8.16 0.00 0.00 3.51
337 338 2.420022 GCGCAATTGTAGTCTTGATGGT 59.580 45.455 0.30 0.00 0.00 3.55
338 339 3.621268 GCGCAATTGTAGTCTTGATGGTA 59.379 43.478 0.30 0.00 0.00 3.25
339 340 4.273480 GCGCAATTGTAGTCTTGATGGTAT 59.727 41.667 0.30 0.00 0.00 2.73
340 341 5.559035 GCGCAATTGTAGTCTTGATGGTATC 60.559 44.000 0.30 0.00 0.00 2.24
341 342 5.050091 CGCAATTGTAGTCTTGATGGTATCC 60.050 44.000 7.40 0.00 0.00 2.59
342 343 5.822519 GCAATTGTAGTCTTGATGGTATCCA 59.177 40.000 7.40 0.00 38.19 3.41
343 344 6.318648 GCAATTGTAGTCTTGATGGTATCCAA 59.681 38.462 7.40 0.00 36.95 3.53
344 345 7.679638 GCAATTGTAGTCTTGATGGTATCCAAC 60.680 40.741 7.40 0.00 36.95 3.77
345 346 6.367374 TTGTAGTCTTGATGGTATCCAACA 57.633 37.500 0.00 0.00 36.95 3.33
346 347 5.730550 TGTAGTCTTGATGGTATCCAACAC 58.269 41.667 0.00 0.00 36.07 3.32
347 348 3.861840 AGTCTTGATGGTATCCAACACG 58.138 45.455 0.00 0.00 36.07 4.49
348 349 3.513912 AGTCTTGATGGTATCCAACACGA 59.486 43.478 0.00 0.53 36.07 4.35
349 350 4.162320 AGTCTTGATGGTATCCAACACGAT 59.838 41.667 8.03 0.00 37.06 3.73
350 351 5.362717 AGTCTTGATGGTATCCAACACGATA 59.637 40.000 8.03 0.00 37.06 2.92
351 352 5.692204 GTCTTGATGGTATCCAACACGATAG 59.308 44.000 8.03 0.73 37.06 2.08
352 353 5.596772 TCTTGATGGTATCCAACACGATAGA 59.403 40.000 0.00 0.00 36.07 1.98
353 354 6.267699 TCTTGATGGTATCCAACACGATAGAT 59.732 38.462 0.00 0.00 36.07 1.98
354 355 6.419484 TGATGGTATCCAACACGATAGATT 57.581 37.500 0.00 0.00 36.95 2.40
355 356 6.223120 TGATGGTATCCAACACGATAGATTG 58.777 40.000 0.00 0.00 36.95 2.67
356 357 5.862678 TGGTATCCAACACGATAGATTGA 57.137 39.130 0.00 0.00 37.74 2.57
357 358 5.842907 TGGTATCCAACACGATAGATTGAG 58.157 41.667 0.00 0.00 37.74 3.02
358 359 5.596772 TGGTATCCAACACGATAGATTGAGA 59.403 40.000 0.00 0.00 37.74 3.27
359 360 6.097696 TGGTATCCAACACGATAGATTGAGAA 59.902 38.462 0.00 0.00 37.74 2.87
360 361 6.984474 GGTATCCAACACGATAGATTGAGAAA 59.016 38.462 0.00 0.00 37.74 2.52
361 362 7.657761 GGTATCCAACACGATAGATTGAGAAAT 59.342 37.037 0.00 0.00 37.74 2.17
362 363 9.692749 GTATCCAACACGATAGATTGAGAAATA 57.307 33.333 0.00 0.00 37.74 1.40
364 365 9.784531 ATCCAACACGATAGATTGAGAAATAAT 57.215 29.630 0.00 0.00 37.74 1.28
365 366 9.613428 TCCAACACGATAGATTGAGAAATAATT 57.387 29.630 0.00 0.00 37.74 1.40
394 395 8.856490 AAAACAACTAAGAAATAGCAACTGTG 57.144 30.769 0.00 0.00 34.78 3.66
427 428 8.833231 ATATTACATTGTACTAAAGCTGCGAT 57.167 30.769 0.00 0.00 0.00 4.58
431 432 9.752961 TTACATTGTACTAAAGCTGCGATAATA 57.247 29.630 0.00 0.00 0.00 0.98
434 435 9.929722 CATTGTACTAAAGCTGCGATAATAAAA 57.070 29.630 0.00 0.00 0.00 1.52
438 439 9.382244 GTACTAAAGCTGCGATAATAAAAATGG 57.618 33.333 0.00 0.00 0.00 3.16
441 442 9.683069 CTAAAGCTGCGATAATAAAAATGGATT 57.317 29.630 0.00 0.00 0.00 3.01
446 447 6.980593 TGCGATAATAAAAATGGATTGGAGG 58.019 36.000 0.00 0.00 0.00 4.30
481 482 9.639563 ACTTTGATCTAGAGATTAGAGATGTGA 57.360 33.333 8.34 0.00 34.37 3.58
615 616 0.108992 TGGTGATACGCAACTCGACC 60.109 55.000 0.00 0.00 41.67 4.79
617 618 1.269166 GTGATACGCAACTCGACCAG 58.731 55.000 0.00 0.00 41.67 4.00
619 620 0.172803 GATACGCAACTCGACCAGGT 59.827 55.000 0.00 0.00 41.67 4.00
636 637 7.023575 CGACCAGGTGAGAAATAATTTTTGAG 58.976 38.462 0.00 0.00 0.00 3.02
641 642 9.007901 CAGGTGAGAAATAATTTTTGAGAGAGT 57.992 33.333 0.00 0.00 0.00 3.24
658 659 3.600388 AGAGTAAGAAATGGCAGTTCCG 58.400 45.455 22.60 0.00 37.80 4.30
659 660 3.260884 AGAGTAAGAAATGGCAGTTCCGA 59.739 43.478 22.60 9.31 37.80 4.55
660 661 4.000988 GAGTAAGAAATGGCAGTTCCGAA 58.999 43.478 22.60 7.04 37.80 4.30
661 662 4.394729 AGTAAGAAATGGCAGTTCCGAAA 58.605 39.130 22.60 4.63 37.80 3.46
662 663 3.923017 AAGAAATGGCAGTTCCGAAAG 57.077 42.857 22.60 0.00 37.80 2.62
663 664 1.541588 AGAAATGGCAGTTCCGAAAGC 59.458 47.619 22.60 0.00 37.80 3.51
664 665 0.240945 AAATGGCAGTTCCGAAAGCG 59.759 50.000 0.00 0.00 37.80 4.68
673 674 4.725169 GCAGTTCCGAAAGCGAAAGAATAG 60.725 45.833 0.00 0.00 40.82 1.73
678 679 5.579718 TCCGAAAGCGAAAGAATAGTCTAG 58.420 41.667 0.00 0.00 40.82 2.43
686 687 6.154706 AGCGAAAGAATAGTCTAGGAAGGAAA 59.845 38.462 0.00 0.00 32.16 3.13
688 689 7.201539 GCGAAAGAATAGTCTAGGAAGGAAAAC 60.202 40.741 0.00 0.00 32.16 2.43
690 691 5.662456 AGAATAGTCTAGGAAGGAAAACGC 58.338 41.667 0.00 0.00 29.93 4.84
691 692 5.187186 AGAATAGTCTAGGAAGGAAAACGCA 59.813 40.000 0.00 0.00 29.93 5.24
693 694 4.081322 AGTCTAGGAAGGAAAACGCAAA 57.919 40.909 0.00 0.00 0.00 3.68
694 695 4.457466 AGTCTAGGAAGGAAAACGCAAAA 58.543 39.130 0.00 0.00 0.00 2.44
727 887 4.452890 AAGAACGAATGTGACACGAAAG 57.547 40.909 2.53 0.00 0.00 2.62
738 898 3.061139 GTGACACGAAAGTTTCTCAGTCG 60.061 47.826 13.56 2.61 46.40 4.18
740 900 3.114065 ACACGAAAGTTTCTCAGTCGTC 58.886 45.455 13.56 0.00 46.40 4.20
774 934 1.064134 CGCGGATGATCACGACAGA 59.936 57.895 9.68 0.00 0.00 3.41
776 936 0.382158 GCGGATGATCACGACAGAGA 59.618 55.000 9.68 0.00 0.00 3.10
777 937 1.202302 GCGGATGATCACGACAGAGAA 60.202 52.381 9.68 0.00 0.00 2.87
778 938 2.455032 CGGATGATCACGACAGAGAAC 58.545 52.381 0.00 0.00 0.00 3.01
779 939 2.796383 CGGATGATCACGACAGAGAACC 60.796 54.545 0.00 0.00 0.00 3.62
782 942 1.546029 TGATCACGACAGAGAACCCAG 59.454 52.381 0.00 0.00 0.00 4.45
783 943 1.546476 GATCACGACAGAGAACCCAGT 59.454 52.381 0.00 0.00 0.00 4.00
785 945 0.946221 CACGACAGAGAACCCAGTGC 60.946 60.000 0.00 0.00 0.00 4.40
786 946 1.374758 CGACAGAGAACCCAGTGCC 60.375 63.158 0.00 0.00 0.00 5.01
1014 1195 1.819208 TGCAATGGATTCCCTCGCG 60.819 57.895 0.00 0.00 0.00 5.87
1042 1223 3.682292 AACCTCGCCGCCTTGATCC 62.682 63.158 0.00 0.00 0.00 3.36
1104 1285 3.057547 CTCCTGTGGCGTCCTCGAG 62.058 68.421 5.13 5.13 39.71 4.04
1143 1324 4.925861 GCCATCTCCAGAGCGCCC 62.926 72.222 2.29 0.00 0.00 6.13
1206 1387 3.825833 CTACGGCATCCTCGTCGCC 62.826 68.421 0.00 0.00 41.38 5.54
1358 1539 4.834496 TGGAGGCTTTGTGATTCTGAAAAT 59.166 37.500 0.00 0.00 0.00 1.82
1377 1558 6.095720 TGAAAATGAAGTAGTTTTTGACGGGT 59.904 34.615 0.00 0.00 0.00 5.28
1403 1584 5.097529 CGAAAATGATGTGGTTGATCCTTG 58.902 41.667 0.00 0.00 37.07 3.61
1408 1589 3.507233 TGATGTGGTTGATCCTTGCTTTC 59.493 43.478 0.00 0.00 37.07 2.62
1443 1624 6.656314 TCATGTACCGATGTTGTTGTAATC 57.344 37.500 0.00 0.00 0.00 1.75
1445 1626 6.312672 TCATGTACCGATGTTGTTGTAATCTG 59.687 38.462 0.00 0.00 0.00 2.90
1447 1628 5.992829 TGTACCGATGTTGTTGTAATCTGTT 59.007 36.000 0.00 0.00 0.00 3.16
1448 1629 7.153315 TGTACCGATGTTGTTGTAATCTGTTA 58.847 34.615 0.00 0.00 0.00 2.41
1479 1660 7.008266 GTGTCAGTTGTAATCTGTTTGTTTGTG 59.992 37.037 0.00 0.00 34.86 3.33
1485 1666 9.169468 GTTGTAATCTGTTTGTTTGTGTATCAG 57.831 33.333 0.00 0.00 0.00 2.90
1486 1667 7.359595 TGTAATCTGTTTGTTTGTGTATCAGC 58.640 34.615 0.00 0.00 0.00 4.26
1487 1668 4.466567 TCTGTTTGTTTGTGTATCAGCG 57.533 40.909 0.00 0.00 0.00 5.18
1497 1678 4.195225 TGTGTATCAGCGGTGTCATTTA 57.805 40.909 15.22 0.00 0.00 1.40
1509 1690 4.201851 CGGTGTCATTTATCAGCTTTGAGG 60.202 45.833 0.00 0.00 0.00 3.86
1510 1691 4.702131 GGTGTCATTTATCAGCTTTGAGGT 59.298 41.667 0.00 0.00 0.00 3.85
1511 1692 5.183904 GGTGTCATTTATCAGCTTTGAGGTT 59.816 40.000 0.00 0.00 0.00 3.50
1513 1694 7.094377 GGTGTCATTTATCAGCTTTGAGGTTTA 60.094 37.037 0.00 0.00 0.00 2.01
1543 1726 5.554437 TCCAACTGTAGTATGTTTGTGGA 57.446 39.130 0.00 0.00 0.00 4.02
1558 1741 6.015918 TGTTTGTGGAGATGATATTTGGGTT 58.984 36.000 0.00 0.00 0.00 4.11
1559 1742 7.178573 TGTTTGTGGAGATGATATTTGGGTTA 58.821 34.615 0.00 0.00 0.00 2.85
1560 1743 7.838696 TGTTTGTGGAGATGATATTTGGGTTAT 59.161 33.333 0.00 0.00 0.00 1.89
1561 1744 8.695456 GTTTGTGGAGATGATATTTGGGTTATT 58.305 33.333 0.00 0.00 0.00 1.40
1562 1745 7.822161 TGTGGAGATGATATTTGGGTTATTG 57.178 36.000 0.00 0.00 0.00 1.90
1563 1746 6.265196 TGTGGAGATGATATTTGGGTTATTGC 59.735 38.462 0.00 0.00 0.00 3.56
1564 1747 5.473162 TGGAGATGATATTTGGGTTATTGCG 59.527 40.000 0.00 0.00 0.00 4.85
1571 1754 3.562567 TTTGGGTTATTGCGCTGTAAC 57.437 42.857 20.15 20.15 0.00 2.50
1606 1789 2.543777 AACGGAGCTTGTGTGTATGT 57.456 45.000 0.00 0.00 0.00 2.29
1619 1802 0.779408 TGTATGTCGTTGTGCGTTCG 59.221 50.000 0.00 0.00 42.13 3.95
1638 1821 6.083630 CGTTCGACCAATATGAAATTGTTGT 58.916 36.000 0.00 0.00 0.00 3.32
2011 2334 4.365514 TTGTGAGGTTCTAAAGGCATGA 57.634 40.909 0.00 0.00 0.00 3.07
2074 2435 0.108377 TTGCTCGCCGCTTCTCAATA 60.108 50.000 0.00 0.00 40.11 1.90
2286 2668 4.035017 CACGCAAGAAAAACAAACGATCT 58.965 39.130 0.00 0.00 43.62 2.75
2327 2711 2.528818 TTGGGCTACTGCTGCAGGT 61.529 57.895 31.00 19.30 39.59 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.710096 TACCTGTTTATCAGCTGCCC 57.290 50.000 9.47 0.00 42.38 5.36
1 2 6.234177 AGATATTACCTGTTTATCAGCTGCC 58.766 40.000 9.47 0.00 42.38 4.85
10 11 9.940974 TGGAGTAAGGTAGATATTACCTGTTTA 57.059 33.333 13.87 4.68 46.52 2.01
11 12 8.849543 TGGAGTAAGGTAGATATTACCTGTTT 57.150 34.615 13.87 5.36 46.52 2.83
12 13 9.091220 GATGGAGTAAGGTAGATATTACCTGTT 57.909 37.037 13.87 5.85 46.52 3.16
13 14 7.674772 GGATGGAGTAAGGTAGATATTACCTGT 59.325 40.741 13.87 9.03 46.52 4.00
17 18 7.700022 ACGGATGGAGTAAGGTAGATATTAC 57.300 40.000 0.00 0.00 33.06 1.89
18 19 7.395489 GGAACGGATGGAGTAAGGTAGATATTA 59.605 40.741 0.00 0.00 0.00 0.98
19 20 6.210984 GGAACGGATGGAGTAAGGTAGATATT 59.789 42.308 0.00 0.00 0.00 1.28
20 21 5.715753 GGAACGGATGGAGTAAGGTAGATAT 59.284 44.000 0.00 0.00 0.00 1.63
21 22 5.075493 GGAACGGATGGAGTAAGGTAGATA 58.925 45.833 0.00 0.00 0.00 1.98
22 23 3.896272 GGAACGGATGGAGTAAGGTAGAT 59.104 47.826 0.00 0.00 0.00 1.98
23 24 3.294214 GGAACGGATGGAGTAAGGTAGA 58.706 50.000 0.00 0.00 0.00 2.59
24 25 3.028850 TGGAACGGATGGAGTAAGGTAG 58.971 50.000 0.00 0.00 0.00 3.18
25 26 3.104519 TGGAACGGATGGAGTAAGGTA 57.895 47.619 0.00 0.00 0.00 3.08
26 27 1.946984 TGGAACGGATGGAGTAAGGT 58.053 50.000 0.00 0.00 0.00 3.50
27 28 4.682778 TTATGGAACGGATGGAGTAAGG 57.317 45.455 0.00 0.00 0.00 2.69
28 29 8.967918 TCTATATTATGGAACGGATGGAGTAAG 58.032 37.037 0.00 0.00 0.00 2.34
29 30 8.888836 TCTATATTATGGAACGGATGGAGTAA 57.111 34.615 0.00 0.00 0.00 2.24
30 31 8.888836 TTCTATATTATGGAACGGATGGAGTA 57.111 34.615 0.00 0.00 0.00 2.59
31 32 7.792364 TTCTATATTATGGAACGGATGGAGT 57.208 36.000 0.00 0.00 0.00 3.85
32 33 9.751542 GTATTCTATATTATGGAACGGATGGAG 57.248 37.037 4.77 0.00 32.40 3.86
33 34 9.488762 AGTATTCTATATTATGGAACGGATGGA 57.511 33.333 4.77 0.00 32.40 3.41
47 48 9.036980 AGGCGATCCACTAAAGTATTCTATATT 57.963 33.333 0.00 0.00 33.74 1.28
48 49 8.596781 AGGCGATCCACTAAAGTATTCTATAT 57.403 34.615 0.00 0.00 33.74 0.86
49 50 8.418597 AAGGCGATCCACTAAAGTATTCTATA 57.581 34.615 0.00 0.00 33.74 1.31
50 51 6.919775 AGGCGATCCACTAAAGTATTCTAT 57.080 37.500 0.00 0.00 33.74 1.98
51 52 6.726490 AAGGCGATCCACTAAAGTATTCTA 57.274 37.500 0.00 0.00 33.74 2.10
52 53 5.615925 AAGGCGATCCACTAAAGTATTCT 57.384 39.130 0.00 0.00 33.74 2.40
53 54 5.815740 TGAAAGGCGATCCACTAAAGTATTC 59.184 40.000 0.00 0.00 33.74 1.75
54 55 5.585047 GTGAAAGGCGATCCACTAAAGTATT 59.415 40.000 0.00 0.00 33.74 1.89
55 56 5.116882 GTGAAAGGCGATCCACTAAAGTAT 58.883 41.667 0.00 0.00 33.74 2.12
56 57 4.501071 GTGAAAGGCGATCCACTAAAGTA 58.499 43.478 0.00 0.00 33.74 2.24
57 58 3.335579 GTGAAAGGCGATCCACTAAAGT 58.664 45.455 0.00 0.00 33.74 2.66
58 59 2.678336 GGTGAAAGGCGATCCACTAAAG 59.322 50.000 0.00 0.00 33.74 1.85
59 60 2.304761 AGGTGAAAGGCGATCCACTAAA 59.695 45.455 0.00 0.00 33.74 1.85
60 61 1.906574 AGGTGAAAGGCGATCCACTAA 59.093 47.619 0.00 0.00 33.74 2.24
61 62 1.480954 GAGGTGAAAGGCGATCCACTA 59.519 52.381 0.00 0.00 33.74 2.74
62 63 0.250513 GAGGTGAAAGGCGATCCACT 59.749 55.000 0.00 0.00 33.74 4.00
63 64 0.744771 GGAGGTGAAAGGCGATCCAC 60.745 60.000 0.00 0.00 33.74 4.02
64 65 1.198094 TGGAGGTGAAAGGCGATCCA 61.198 55.000 0.00 0.00 34.54 3.41
65 66 0.035439 TTGGAGGTGAAAGGCGATCC 60.035 55.000 0.00 0.00 0.00 3.36
66 67 1.468914 GTTTGGAGGTGAAAGGCGATC 59.531 52.381 0.00 0.00 0.00 3.69
67 68 1.073923 AGTTTGGAGGTGAAAGGCGAT 59.926 47.619 0.00 0.00 0.00 4.58
68 69 0.472471 AGTTTGGAGGTGAAAGGCGA 59.528 50.000 0.00 0.00 0.00 5.54
69 70 1.266989 GAAGTTTGGAGGTGAAAGGCG 59.733 52.381 0.00 0.00 0.00 5.52
70 71 2.587522 AGAAGTTTGGAGGTGAAAGGC 58.412 47.619 0.00 0.00 0.00 4.35
71 72 4.714632 TGTAGAAGTTTGGAGGTGAAAGG 58.285 43.478 0.00 0.00 0.00 3.11
72 73 6.884280 AATGTAGAAGTTTGGAGGTGAAAG 57.116 37.500 0.00 0.00 0.00 2.62
73 74 8.934023 ATAAATGTAGAAGTTTGGAGGTGAAA 57.066 30.769 0.00 0.00 0.00 2.69
109 110 8.870160 TTCCTGAAATAAACACAAGTTCATTG 57.130 30.769 0.00 0.00 45.01 2.82
110 111 9.883142 TTTTCCTGAAATAAACACAAGTTCATT 57.117 25.926 0.00 0.00 36.84 2.57
112 113 9.311916 CATTTTCCTGAAATAAACACAAGTTCA 57.688 29.630 0.00 0.00 34.74 3.18
113 114 9.313118 ACATTTTCCTGAAATAAACACAAGTTC 57.687 29.630 0.00 0.00 34.74 3.01
115 116 9.744468 GTACATTTTCCTGAAATAAACACAAGT 57.256 29.630 0.00 0.00 35.79 3.16
116 117 9.965824 AGTACATTTTCCTGAAATAAACACAAG 57.034 29.630 0.00 0.00 35.79 3.16
117 118 9.959749 GAGTACATTTTCCTGAAATAAACACAA 57.040 29.630 0.00 0.00 35.79 3.33
118 119 8.573035 GGAGTACATTTTCCTGAAATAAACACA 58.427 33.333 0.00 0.00 35.79 3.72
119 120 8.793592 AGGAGTACATTTTCCTGAAATAAACAC 58.206 33.333 0.74 0.00 42.18 3.32
120 121 8.934023 AGGAGTACATTTTCCTGAAATAAACA 57.066 30.769 0.74 0.00 42.18 2.83
121 122 9.626045 CAAGGAGTACATTTTCCTGAAATAAAC 57.374 33.333 2.34 0.00 42.95 2.01
122 123 9.581289 TCAAGGAGTACATTTTCCTGAAATAAA 57.419 29.630 2.34 0.00 42.95 1.40
123 124 9.581289 TTCAAGGAGTACATTTTCCTGAAATAA 57.419 29.630 2.34 0.00 42.95 1.40
124 125 9.581289 TTTCAAGGAGTACATTTTCCTGAAATA 57.419 29.630 15.00 3.94 42.95 1.40
125 126 8.477419 TTTCAAGGAGTACATTTTCCTGAAAT 57.523 30.769 15.00 0.00 42.95 2.17
126 127 7.889873 TTTCAAGGAGTACATTTTCCTGAAA 57.110 32.000 15.00 15.00 42.95 2.69
127 128 7.889873 TTTTCAAGGAGTACATTTTCCTGAA 57.110 32.000 2.34 6.10 42.95 3.02
128 129 8.477419 AATTTTCAAGGAGTACATTTTCCTGA 57.523 30.769 2.34 1.04 42.95 3.86
129 130 8.981647 CAAATTTTCAAGGAGTACATTTTCCTG 58.018 33.333 2.34 0.00 42.95 3.86
130 131 7.657354 GCAAATTTTCAAGGAGTACATTTTCCT 59.343 33.333 0.00 0.00 45.65 3.36
131 132 7.440856 TGCAAATTTTCAAGGAGTACATTTTCC 59.559 33.333 0.00 0.00 0.00 3.13
132 133 8.364129 TGCAAATTTTCAAGGAGTACATTTTC 57.636 30.769 0.00 0.00 0.00 2.29
133 134 7.986889 ACTGCAAATTTTCAAGGAGTACATTTT 59.013 29.630 0.00 0.00 30.64 1.82
134 135 7.500141 ACTGCAAATTTTCAAGGAGTACATTT 58.500 30.769 0.00 0.00 30.64 2.32
135 136 7.054491 ACTGCAAATTTTCAAGGAGTACATT 57.946 32.000 0.00 0.00 30.64 2.71
136 137 6.265196 TGACTGCAAATTTTCAAGGAGTACAT 59.735 34.615 0.00 0.00 32.66 2.29
137 138 5.592282 TGACTGCAAATTTTCAAGGAGTACA 59.408 36.000 0.00 0.53 32.66 2.90
138 139 6.072112 TGACTGCAAATTTTCAAGGAGTAC 57.928 37.500 1.24 0.00 32.66 2.73
139 140 6.321181 AGTTGACTGCAAATTTTCAAGGAGTA 59.679 34.615 3.77 0.00 35.42 2.59
140 141 5.127682 AGTTGACTGCAAATTTTCAAGGAGT 59.872 36.000 3.77 2.35 35.42 3.85
141 142 5.461078 CAGTTGACTGCAAATTTTCAAGGAG 59.539 40.000 3.77 0.00 37.15 3.69
142 143 5.126869 TCAGTTGACTGCAAATTTTCAAGGA 59.873 36.000 6.27 3.16 43.46 3.36
143 144 5.350633 TCAGTTGACTGCAAATTTTCAAGG 58.649 37.500 6.27 1.26 43.46 3.61
144 145 6.890663 TTCAGTTGACTGCAAATTTTCAAG 57.109 33.333 6.27 0.00 43.46 3.02
145 146 8.939201 TTATTCAGTTGACTGCAAATTTTCAA 57.061 26.923 6.27 0.00 43.46 2.69
150 151 9.630098 CAAGTATTATTCAGTTGACTGCAAATT 57.370 29.630 6.27 0.00 43.46 1.82
151 152 8.796475 ACAAGTATTATTCAGTTGACTGCAAAT 58.204 29.630 6.27 5.09 43.46 2.32
152 153 8.165239 ACAAGTATTATTCAGTTGACTGCAAA 57.835 30.769 6.27 0.00 43.46 3.68
153 154 7.744087 ACAAGTATTATTCAGTTGACTGCAA 57.256 32.000 6.27 3.07 43.46 4.08
154 155 7.744087 AACAAGTATTATTCAGTTGACTGCA 57.256 32.000 6.27 0.00 43.46 4.41
155 156 8.076178 ACAAACAAGTATTATTCAGTTGACTGC 58.924 33.333 6.27 0.00 43.46 4.40
159 160 9.787435 ACCTACAAACAAGTATTATTCAGTTGA 57.213 29.630 0.00 0.00 31.94 3.18
161 162 8.932791 CGACCTACAAACAAGTATTATTCAGTT 58.067 33.333 0.00 0.00 0.00 3.16
162 163 8.308931 TCGACCTACAAACAAGTATTATTCAGT 58.691 33.333 0.00 0.00 0.00 3.41
163 164 8.697846 TCGACCTACAAACAAGTATTATTCAG 57.302 34.615 0.00 0.00 0.00 3.02
164 165 8.525316 TCTCGACCTACAAACAAGTATTATTCA 58.475 33.333 0.00 0.00 0.00 2.57
165 166 8.805688 GTCTCGACCTACAAACAAGTATTATTC 58.194 37.037 0.00 0.00 0.00 1.75
166 167 8.699283 GTCTCGACCTACAAACAAGTATTATT 57.301 34.615 0.00 0.00 0.00 1.40
184 185 3.299340 TTAGTTGCTCAAGGTCTCGAC 57.701 47.619 0.00 0.00 0.00 4.20
185 186 5.854010 ATATTAGTTGCTCAAGGTCTCGA 57.146 39.130 0.00 0.00 0.00 4.04
186 187 6.910536 AAATATTAGTTGCTCAAGGTCTCG 57.089 37.500 0.00 0.00 0.00 4.04
209 210 9.920133 TGCAAGTGCTCAATTAACATTTAAATA 57.080 25.926 0.00 0.00 42.66 1.40
210 211 8.830201 TGCAAGTGCTCAATTAACATTTAAAT 57.170 26.923 4.69 0.00 42.66 1.40
211 212 8.830201 ATGCAAGTGCTCAATTAACATTTAAA 57.170 26.923 4.69 0.00 42.66 1.52
212 213 9.571810 CTATGCAAGTGCTCAATTAACATTTAA 57.428 29.630 4.69 0.00 42.66 1.52
213 214 8.739039 ACTATGCAAGTGCTCAATTAACATTTA 58.261 29.630 4.69 0.00 42.66 1.40
214 215 7.605449 ACTATGCAAGTGCTCAATTAACATTT 58.395 30.769 4.69 0.00 42.66 2.32
215 216 7.161773 ACTATGCAAGTGCTCAATTAACATT 57.838 32.000 4.69 0.00 42.66 2.71
216 217 6.764308 ACTATGCAAGTGCTCAATTAACAT 57.236 33.333 4.69 4.16 42.66 2.71
217 218 6.573664 AACTATGCAAGTGCTCAATTAACA 57.426 33.333 4.69 0.00 38.88 2.41
218 219 8.450964 TCTAAACTATGCAAGTGCTCAATTAAC 58.549 33.333 4.69 0.00 38.88 2.01
219 220 8.560355 TCTAAACTATGCAAGTGCTCAATTAA 57.440 30.769 4.69 0.00 38.88 1.40
220 221 8.040727 TCTCTAAACTATGCAAGTGCTCAATTA 58.959 33.333 4.69 0.00 38.88 1.40
221 222 6.881065 TCTCTAAACTATGCAAGTGCTCAATT 59.119 34.615 4.69 0.00 38.88 2.32
222 223 6.409704 TCTCTAAACTATGCAAGTGCTCAAT 58.590 36.000 4.69 0.00 38.88 2.57
223 224 5.793817 TCTCTAAACTATGCAAGTGCTCAA 58.206 37.500 4.69 0.00 38.88 3.02
224 225 5.405935 TCTCTAAACTATGCAAGTGCTCA 57.594 39.130 4.69 0.00 38.88 4.26
225 226 5.639506 TGTTCTCTAAACTATGCAAGTGCTC 59.360 40.000 4.69 0.00 38.88 4.26
226 227 5.551233 TGTTCTCTAAACTATGCAAGTGCT 58.449 37.500 4.69 0.00 38.88 4.40
227 228 5.862924 TGTTCTCTAAACTATGCAAGTGC 57.137 39.130 0.00 0.00 38.88 4.40
228 229 8.119226 GCTAATGTTCTCTAAACTATGCAAGTG 58.881 37.037 0.00 0.00 38.88 3.16
229 230 7.824289 TGCTAATGTTCTCTAAACTATGCAAGT 59.176 33.333 0.00 0.00 41.49 3.16
230 231 8.201554 TGCTAATGTTCTCTAAACTATGCAAG 57.798 34.615 0.00 0.00 0.00 4.01
231 232 8.560355 TTGCTAATGTTCTCTAAACTATGCAA 57.440 30.769 0.00 0.00 32.86 4.08
232 233 7.824289 ACTTGCTAATGTTCTCTAAACTATGCA 59.176 33.333 0.00 0.00 0.00 3.96
233 234 8.202745 ACTTGCTAATGTTCTCTAAACTATGC 57.797 34.615 0.00 0.00 0.00 3.14
234 235 9.979270 CAACTTGCTAATGTTCTCTAAACTATG 57.021 33.333 0.00 0.00 0.00 2.23
235 236 9.944376 TCAACTTGCTAATGTTCTCTAAACTAT 57.056 29.630 0.00 0.00 0.00 2.12
236 237 9.944376 ATCAACTTGCTAATGTTCTCTAAACTA 57.056 29.630 0.00 0.00 0.00 2.24
237 238 8.854614 ATCAACTTGCTAATGTTCTCTAAACT 57.145 30.769 0.00 0.00 0.00 2.66
238 239 8.940952 AGATCAACTTGCTAATGTTCTCTAAAC 58.059 33.333 0.00 0.00 0.00 2.01
239 240 9.507329 AAGATCAACTTGCTAATGTTCTCTAAA 57.493 29.630 0.00 0.00 37.45 1.85
256 257 9.778741 TGTACAGTTTTAATCTCAAGATCAACT 57.221 29.630 0.00 0.81 33.28 3.16
257 258 9.813080 GTGTACAGTTTTAATCTCAAGATCAAC 57.187 33.333 0.00 0.00 32.75 3.18
258 259 9.554395 TGTGTACAGTTTTAATCTCAAGATCAA 57.446 29.630 0.00 0.00 32.75 2.57
259 260 9.725019 ATGTGTACAGTTTTAATCTCAAGATCA 57.275 29.630 0.00 0.00 32.75 2.92
284 285 9.869757 GGTCAATGCAACTTTAGGTATTAAAAT 57.130 29.630 0.00 0.00 31.12 1.82
285 286 9.084533 AGGTCAATGCAACTTTAGGTATTAAAA 57.915 29.630 0.00 0.00 31.12 1.52
286 287 8.644374 AGGTCAATGCAACTTTAGGTATTAAA 57.356 30.769 0.00 0.00 0.00 1.52
287 288 9.914834 ATAGGTCAATGCAACTTTAGGTATTAA 57.085 29.630 0.00 0.00 0.00 1.40
288 289 9.914834 AATAGGTCAATGCAACTTTAGGTATTA 57.085 29.630 0.00 0.00 0.00 0.98
289 290 8.823220 AATAGGTCAATGCAACTTTAGGTATT 57.177 30.769 0.00 0.00 0.00 1.89
290 291 8.686334 CAAATAGGTCAATGCAACTTTAGGTAT 58.314 33.333 0.00 0.00 0.00 2.73
291 292 7.362574 GCAAATAGGTCAATGCAACTTTAGGTA 60.363 37.037 0.00 0.00 38.63 3.08
292 293 6.572314 GCAAATAGGTCAATGCAACTTTAGGT 60.572 38.462 0.00 0.00 38.63 3.08
293 294 5.807011 GCAAATAGGTCAATGCAACTTTAGG 59.193 40.000 0.00 0.00 38.63 2.69
294 295 5.512788 CGCAAATAGGTCAATGCAACTTTAG 59.487 40.000 0.00 0.00 38.69 1.85
295 296 5.398169 CGCAAATAGGTCAATGCAACTTTA 58.602 37.500 0.00 0.00 38.69 1.85
296 297 4.236935 CGCAAATAGGTCAATGCAACTTT 58.763 39.130 0.00 0.00 38.69 2.66
297 298 3.836949 CGCAAATAGGTCAATGCAACTT 58.163 40.909 0.00 0.00 38.69 2.66
298 299 2.415893 GCGCAAATAGGTCAATGCAACT 60.416 45.455 0.30 0.00 38.69 3.16
299 300 1.919918 GCGCAAATAGGTCAATGCAAC 59.080 47.619 0.30 0.00 38.69 4.17
300 301 1.543358 TGCGCAAATAGGTCAATGCAA 59.457 42.857 8.16 0.00 38.69 4.08
301 302 1.172175 TGCGCAAATAGGTCAATGCA 58.828 45.000 8.16 0.00 38.69 3.96
302 303 2.276472 TTGCGCAAATAGGTCAATGC 57.724 45.000 22.78 0.00 35.49 3.56
303 304 4.175516 ACAATTGCGCAAATAGGTCAATG 58.824 39.130 28.81 15.59 0.00 2.82
304 305 4.454728 ACAATTGCGCAAATAGGTCAAT 57.545 36.364 28.81 3.75 0.00 2.57
305 306 3.932545 ACAATTGCGCAAATAGGTCAA 57.067 38.095 28.81 0.00 0.00 3.18
306 307 4.006989 ACTACAATTGCGCAAATAGGTCA 58.993 39.130 28.81 0.63 0.00 4.02
307 308 4.332819 AGACTACAATTGCGCAAATAGGTC 59.667 41.667 28.81 26.24 0.00 3.85
308 309 4.261801 AGACTACAATTGCGCAAATAGGT 58.738 39.130 28.81 22.49 0.00 3.08
309 310 4.882671 AGACTACAATTGCGCAAATAGG 57.117 40.909 28.81 18.11 0.00 2.57
310 311 5.868257 TCAAGACTACAATTGCGCAAATAG 58.132 37.500 28.81 26.86 0.00 1.73
311 312 5.871465 TCAAGACTACAATTGCGCAAATA 57.129 34.783 28.81 17.91 0.00 1.40
312 313 4.764679 TCAAGACTACAATTGCGCAAAT 57.235 36.364 28.81 17.33 0.00 2.32
313 314 4.475028 CATCAAGACTACAATTGCGCAAA 58.525 39.130 28.81 9.74 0.00 3.68
314 315 3.119884 CCATCAAGACTACAATTGCGCAA 60.120 43.478 27.24 27.24 0.00 4.85
315 316 2.419673 CCATCAAGACTACAATTGCGCA 59.580 45.455 5.66 5.66 0.00 6.09
316 317 2.420022 ACCATCAAGACTACAATTGCGC 59.580 45.455 5.05 0.00 0.00 6.09
317 318 5.050091 GGATACCATCAAGACTACAATTGCG 60.050 44.000 5.05 0.00 0.00 4.85
318 319 5.822519 TGGATACCATCAAGACTACAATTGC 59.177 40.000 5.05 0.00 0.00 3.56
319 320 7.336679 TGTTGGATACCATCAAGACTACAATTG 59.663 37.037 3.24 3.24 31.25 2.32
320 321 7.336931 GTGTTGGATACCATCAAGACTACAATT 59.663 37.037 0.00 0.00 35.37 2.32
321 322 6.823689 GTGTTGGATACCATCAAGACTACAAT 59.176 38.462 0.00 0.00 35.37 2.71
322 323 6.170506 GTGTTGGATACCATCAAGACTACAA 58.829 40.000 0.00 0.00 35.37 2.41
323 324 5.623596 CGTGTTGGATACCATCAAGACTACA 60.624 44.000 8.35 0.00 35.69 2.74
324 325 4.804139 CGTGTTGGATACCATCAAGACTAC 59.196 45.833 8.35 0.00 35.69 2.73
325 326 4.707934 TCGTGTTGGATACCATCAAGACTA 59.292 41.667 11.31 0.00 37.02 2.59
326 327 3.513912 TCGTGTTGGATACCATCAAGACT 59.486 43.478 11.31 0.00 37.02 3.24
327 328 3.857052 TCGTGTTGGATACCATCAAGAC 58.143 45.455 11.31 0.00 37.02 3.01
328 329 4.753516 ATCGTGTTGGATACCATCAAGA 57.246 40.909 15.46 15.46 42.47 3.02
329 330 5.842907 TCTATCGTGTTGGATACCATCAAG 58.157 41.667 0.00 0.00 35.37 3.02
330 331 5.862678 TCTATCGTGTTGGATACCATCAA 57.137 39.130 0.00 0.00 35.37 2.57
331 332 6.041523 TCAATCTATCGTGTTGGATACCATCA 59.958 38.462 0.00 0.00 31.53 3.07
332 333 6.455647 TCAATCTATCGTGTTGGATACCATC 58.544 40.000 0.00 0.00 31.53 3.51
333 334 6.267699 TCTCAATCTATCGTGTTGGATACCAT 59.732 38.462 0.00 0.00 31.53 3.55
334 335 5.596772 TCTCAATCTATCGTGTTGGATACCA 59.403 40.000 0.00 0.00 0.00 3.25
335 336 6.085555 TCTCAATCTATCGTGTTGGATACC 57.914 41.667 0.00 0.00 0.00 2.73
336 337 8.594881 ATTTCTCAATCTATCGTGTTGGATAC 57.405 34.615 0.00 0.00 0.00 2.24
338 339 9.784531 ATTATTTCTCAATCTATCGTGTTGGAT 57.215 29.630 0.00 0.00 0.00 3.41
339 340 9.613428 AATTATTTCTCAATCTATCGTGTTGGA 57.387 29.630 0.00 0.00 0.00 3.53
368 369 9.944663 CACAGTTGCTATTTCTTAGTTGTTTTA 57.055 29.630 0.00 0.00 0.00 1.52
369 370 7.435192 GCACAGTTGCTATTTCTTAGTTGTTTT 59.565 33.333 0.00 0.00 46.17 2.43
370 371 6.918022 GCACAGTTGCTATTTCTTAGTTGTTT 59.082 34.615 0.00 0.00 46.17 2.83
371 372 6.438763 GCACAGTTGCTATTTCTTAGTTGTT 58.561 36.000 0.00 0.00 46.17 2.83
372 373 6.002062 GCACAGTTGCTATTTCTTAGTTGT 57.998 37.500 0.00 0.00 46.17 3.32
387 388 9.195411 ACAATGTAATATTTTCTTGCACAGTTG 57.805 29.630 0.00 1.02 0.00 3.16
389 390 9.840427 GTACAATGTAATATTTTCTTGCACAGT 57.160 29.630 0.00 0.00 0.00 3.55
421 422 7.086376 CCTCCAATCCATTTTTATTATCGCAG 58.914 38.462 0.00 0.00 0.00 5.18
427 428 7.724061 GCTACTCCCTCCAATCCATTTTTATTA 59.276 37.037 0.00 0.00 0.00 0.98
431 432 4.264352 TGCTACTCCCTCCAATCCATTTTT 60.264 41.667 0.00 0.00 0.00 1.94
434 435 2.492025 TGCTACTCCCTCCAATCCATT 58.508 47.619 0.00 0.00 0.00 3.16
438 439 3.636153 AAGTTGCTACTCCCTCCAATC 57.364 47.619 0.07 0.00 31.99 2.67
441 442 2.334977 TCAAAGTTGCTACTCCCTCCA 58.665 47.619 0.07 0.00 31.99 3.86
446 447 6.458232 TCTCTAGATCAAAGTTGCTACTCC 57.542 41.667 0.07 0.00 31.99 3.85
542 543 9.337091 GCAACTTTAGATATTACTTTTCGCAAA 57.663 29.630 0.00 0.00 0.00 3.68
543 544 8.508062 TGCAACTTTAGATATTACTTTTCGCAA 58.492 29.630 0.00 0.00 0.00 4.85
544 545 8.035165 TGCAACTTTAGATATTACTTTTCGCA 57.965 30.769 0.00 0.00 0.00 5.10
615 616 9.007901 ACTCTCTCAAAAATTATTTCTCACCTG 57.992 33.333 0.00 0.00 0.00 4.00
636 637 3.619038 CGGAACTGCCATTTCTTACTCTC 59.381 47.826 0.00 0.00 35.94 3.20
641 642 3.190535 GCTTTCGGAACTGCCATTTCTTA 59.809 43.478 0.00 0.00 35.94 2.10
658 659 6.477360 CCTTCCTAGACTATTCTTTCGCTTTC 59.523 42.308 0.00 0.00 32.75 2.62
659 660 6.154706 TCCTTCCTAGACTATTCTTTCGCTTT 59.845 38.462 0.00 0.00 32.75 3.51
660 661 5.657302 TCCTTCCTAGACTATTCTTTCGCTT 59.343 40.000 0.00 0.00 32.75 4.68
661 662 5.202004 TCCTTCCTAGACTATTCTTTCGCT 58.798 41.667 0.00 0.00 32.75 4.93
662 663 5.517322 TCCTTCCTAGACTATTCTTTCGC 57.483 43.478 0.00 0.00 32.75 4.70
663 664 7.009357 CGTTTTCCTTCCTAGACTATTCTTTCG 59.991 40.741 0.00 0.00 32.75 3.46
664 665 7.201539 GCGTTTTCCTTCCTAGACTATTCTTTC 60.202 40.741 0.00 0.00 32.75 2.62
673 674 4.823790 TTTTGCGTTTTCCTTCCTAGAC 57.176 40.909 0.00 0.00 0.00 2.59
705 856 4.331717 ACTTTCGTGTCACATTCGTTCTTT 59.668 37.500 3.42 0.00 0.00 2.52
711 862 4.026062 TGAGAAACTTTCGTGTCACATTCG 60.026 41.667 3.42 0.00 29.24 3.34
727 887 2.032808 GCAACCAAGACGACTGAGAAAC 60.033 50.000 0.00 0.00 0.00 2.78
738 898 1.125566 GCGTACGTAAGCAACCAAGAC 59.874 52.381 25.48 0.00 45.62 3.01
740 900 0.092351 CGCGTACGTAAGCAACCAAG 59.908 55.000 28.47 11.00 45.62 3.61
786 946 1.901833 CATTTGGTTTCCCTTCCCAGG 59.098 52.381 0.00 0.00 40.45 4.45
1014 1195 1.084370 CGGCGAGGTTGATCAAGGAC 61.084 60.000 8.80 2.47 0.00 3.85
1127 1308 4.598894 CGGGCGCTCTGGAGATGG 62.599 72.222 5.36 0.00 0.00 3.51
1206 1387 1.519455 GAGCCCGAAGATCACCACG 60.519 63.158 0.00 0.00 0.00 4.94
1283 1464 0.390866 CAGCCACAGCATCGTCTTCT 60.391 55.000 0.00 0.00 43.56 2.85
1358 1539 4.507388 CGTTACCCGTCAAAAACTACTTCA 59.493 41.667 0.00 0.00 0.00 3.02
1372 1553 2.745281 CCACATCATTTTCGTTACCCGT 59.255 45.455 0.00 0.00 37.94 5.28
1377 1558 5.943416 AGGATCAACCACATCATTTTCGTTA 59.057 36.000 0.00 0.00 42.04 3.18
1389 1570 1.879380 CGAAAGCAAGGATCAACCACA 59.121 47.619 0.00 0.00 42.04 4.17
1403 1584 1.265568 TGATAGCGAACGTCGAAAGC 58.734 50.000 10.82 0.55 43.74 3.51
1408 1589 2.041966 GGTACATGATAGCGAACGTCG 58.958 52.381 0.00 0.00 43.89 5.12
1443 1624 7.115520 CAGATTACAACTGACACAGACTAACAG 59.884 40.741 5.76 0.00 37.54 3.16
1445 1626 6.924060 ACAGATTACAACTGACACAGACTAAC 59.076 38.462 5.76 0.00 38.55 2.34
1447 1628 6.650427 ACAGATTACAACTGACACAGACTA 57.350 37.500 5.76 0.00 38.55 2.59
1448 1629 5.537300 ACAGATTACAACTGACACAGACT 57.463 39.130 5.76 0.00 38.55 3.24
1479 1660 4.084328 GCTGATAAATGACACCGCTGATAC 60.084 45.833 0.00 0.00 0.00 2.24
1485 1666 3.126858 TCAAAGCTGATAAATGACACCGC 59.873 43.478 0.00 0.00 0.00 5.68
1486 1667 4.201851 CCTCAAAGCTGATAAATGACACCG 60.202 45.833 0.00 0.00 0.00 4.94
1487 1668 4.702131 ACCTCAAAGCTGATAAATGACACC 59.298 41.667 0.00 0.00 0.00 4.16
1497 1678 7.310052 GGAAGGAAAATAAACCTCAAAGCTGAT 60.310 37.037 0.00 0.00 35.25 2.90
1510 1691 9.802039 ACATACTACAGTTGGAAGGAAAATAAA 57.198 29.630 0.00 0.00 0.00 1.40
1511 1692 9.802039 AACATACTACAGTTGGAAGGAAAATAA 57.198 29.630 0.00 0.00 0.00 1.40
1513 1694 8.576442 CAAACATACTACAGTTGGAAGGAAAAT 58.424 33.333 0.00 0.00 0.00 1.82
1543 1726 5.048504 CAGCGCAATAACCCAAATATCATCT 60.049 40.000 11.47 0.00 0.00 2.90
1589 1772 0.992072 CGACATACACACAAGCTCCG 59.008 55.000 0.00 0.00 0.00 4.63
1619 1802 7.094848 CCCCAAAACAACAATTTCATATTGGTC 60.095 37.037 0.00 0.00 34.41 4.02
1638 1821 3.939740 CTGAGATCAGATCCCCCAAAA 57.060 47.619 6.80 0.00 46.59 2.44
1692 1879 7.440523 CTCTACATTAGAGGCAAAACTTTGT 57.559 36.000 4.23 0.00 46.70 2.83
2286 2668 5.634118 ACAAAAGGGACAAGATCAGATCAA 58.366 37.500 13.14 0.00 0.00 2.57
2327 2711 1.075374 ACCAAGCCCATCTTTAGCACA 59.925 47.619 0.00 0.00 31.27 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.