Multiple sequence alignment - TraesCS2A01G462400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G462400 chr2A 100.000 3035 0 0 1 3035 708044429 708041395 0.000000e+00 5605
1 TraesCS2A01G462400 chr2A 88.889 189 18 2 2652 2838 42010789 42010602 2.350000e-56 230
2 TraesCS2A01G462400 chr2A 88.298 188 16 4 2653 2838 505337060 505337243 1.420000e-53 220
3 TraesCS2A01G462400 chr2B 91.346 2207 97 41 482 2654 681350649 681348503 0.000000e+00 2931
4 TraesCS2A01G462400 chr2B 91.720 314 20 6 10 319 681351342 681351031 6.010000e-117 431
5 TraesCS2A01G462400 chr2B 88.194 144 12 3 317 456 681350870 681350728 1.870000e-37 167
6 TraesCS2A01G462400 chr2D 91.000 2211 109 32 473 2652 568774774 568772623 0.000000e+00 2898
7 TraesCS2A01G462400 chr2D 90.088 454 36 6 1 445 568775328 568774875 5.640000e-162 580
8 TraesCS2A01G462400 chr2D 88.393 112 6 5 2857 2967 568772624 568772519 8.830000e-26 128
9 TraesCS2A01G462400 chr6D 89.055 201 15 6 2652 2848 82959137 82958940 3.020000e-60 243
10 TraesCS2A01G462400 chr5A 90.000 190 14 4 2651 2838 656052349 656052163 1.090000e-59 241
11 TraesCS2A01G462400 chr1A 88.889 189 14 4 2655 2838 530756360 530756174 3.040000e-55 226
12 TraesCS2A01G462400 chr1A 85.714 189 23 3 2655 2841 521853123 521852937 2.390000e-46 196
13 TraesCS2A01G462400 chr6A 87.500 192 16 6 2650 2839 410871541 410871726 6.590000e-52 215
14 TraesCS2A01G462400 chrUn 85.644 202 25 3 2656 2855 41497463 41497264 3.070000e-50 209
15 TraesCS2A01G462400 chr7A 80.851 188 25 8 2651 2836 330424000 330424178 1.470000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G462400 chr2A 708041395 708044429 3034 True 5605.000000 5605 100.000 1 3035 1 chr2A.!!$R2 3034
1 TraesCS2A01G462400 chr2B 681348503 681351342 2839 True 1176.333333 2931 90.420 10 2654 3 chr2B.!!$R1 2644
2 TraesCS2A01G462400 chr2D 568772519 568775328 2809 True 1202.000000 2898 89.827 1 2967 3 chr2D.!!$R1 2966

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
861 1142 0.548197 TTCCAGACCCGGTAACCCAT 60.548 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2806 3148 0.973632 AACCACGTCTAGATGTGCCA 59.026 50.0 31.51 0.0 44.71 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 63 1.710809 ACAGATTTAGTGGGCCAAGGT 59.289 47.619 8.40 0.00 0.00 3.50
69 71 2.006748 TGGGCCAAGGTCCATAAGG 58.993 57.895 8.69 0.00 46.04 2.69
139 144 6.838382 ACCATTACATATTGGGAGGTAAGAC 58.162 40.000 5.14 0.00 37.32 3.01
227 233 9.117145 CATATTGCTAGTACAACAAAACAACAG 57.883 33.333 0.00 0.00 31.03 3.16
229 235 3.966218 GCTAGTACAACAAAACAACAGCG 59.034 43.478 0.00 0.00 0.00 5.18
371 541 8.770438 TGTGGTAAATGATTTCCAAATAAAGC 57.230 30.769 9.56 0.00 0.00 3.51
596 860 7.067981 AGGCACATAATTTCCATCTTCTTCTTC 59.932 37.037 0.00 0.00 0.00 2.87
648 912 2.880822 CACGGTTGCACAACTCTATG 57.119 50.000 12.87 3.70 40.94 2.23
722 1003 2.902846 TGGTTTTGGTGACCCGCG 60.903 61.111 0.00 0.00 36.30 6.46
844 1125 2.815647 CCAGAGCCGCCTTCGTTC 60.816 66.667 0.00 0.00 0.00 3.95
861 1142 0.548197 TTCCAGACCCGGTAACCCAT 60.548 55.000 0.00 0.00 0.00 4.00
883 1164 3.988379 AACGACCCGCTTATATACGAA 57.012 42.857 0.00 0.00 0.00 3.85
884 1165 3.273919 ACGACCCGCTTATATACGAAC 57.726 47.619 0.00 0.00 0.00 3.95
926 1208 3.736720 ACGAAGTTAAACAACTCCCTCC 58.263 45.455 0.00 0.00 37.78 4.30
927 1209 3.072211 CGAAGTTAAACAACTCCCTCCC 58.928 50.000 0.00 0.00 31.53 4.30
928 1210 3.244457 CGAAGTTAAACAACTCCCTCCCT 60.244 47.826 0.00 0.00 31.53 4.20
935 1217 2.962138 AACTCCCTCCCTCCTCCCC 61.962 68.421 0.00 0.00 0.00 4.81
996 1278 1.895020 TTAATGCTCCACCGACGCCT 61.895 55.000 0.00 0.00 0.00 5.52
1101 1389 2.202623 GGCGCTGAAGACGACGAT 60.203 61.111 7.64 0.00 0.00 3.73
1182 1470 0.970937 TCTCGGATGGGAAGCTCGTT 60.971 55.000 0.00 0.00 0.00 3.85
1194 1482 1.682684 GCTCGTTCCTCTCCTCCCA 60.683 63.158 0.00 0.00 0.00 4.37
1213 1501 1.523258 CTGCTGAATCCCGCCTCAG 60.523 63.158 0.00 0.00 41.71 3.35
1320 1608 1.028905 GTGATCTCCTCCTCCTCGTG 58.971 60.000 0.00 0.00 0.00 4.35
1428 1716 1.152839 CGACTCCTCCTCCTCCTCC 60.153 68.421 0.00 0.00 0.00 4.30
1442 1730 3.522731 CTCCTCGGCCTCCTCGTG 61.523 72.222 0.00 0.00 0.00 4.35
1945 2233 3.605749 TTCTTCCCAGCTTCGCCGG 62.606 63.158 0.00 0.00 0.00 6.13
2099 2387 3.491267 CGCGGATTCTTCTCTGTATTTCC 59.509 47.826 0.00 0.00 0.00 3.13
2148 2439 4.681978 ACCGCCGCTCCTGTTGTC 62.682 66.667 0.00 0.00 0.00 3.18
2155 2446 1.404315 CCGCTCCTGTTGTCTAGAACC 60.404 57.143 0.00 0.00 0.00 3.62
2212 2515 0.037882 ACTGCCATCAGAGTGTCGTG 60.038 55.000 0.00 0.00 42.95 4.35
2223 2526 3.604198 CAGAGTGTCGTGTCGATGTAAAG 59.396 47.826 0.00 0.00 38.42 1.85
2226 2529 4.227538 AGTGTCGTGTCGATGTAAAGAAG 58.772 43.478 0.00 0.00 38.42 2.85
2263 2589 3.705043 AGAACACTTTGCTTCAAGCTG 57.295 42.857 11.57 2.65 42.97 4.24
2264 2590 3.282021 AGAACACTTTGCTTCAAGCTGA 58.718 40.909 11.57 0.00 42.97 4.26
2265 2591 3.696051 AGAACACTTTGCTTCAAGCTGAA 59.304 39.130 11.57 4.84 42.97 3.02
2287 2613 7.825681 TGAAGATCACTGTGAACTTTTCAAAA 58.174 30.769 27.05 11.55 39.20 2.44
2330 2656 3.136763 CTGTGAAATCGGATGAGGATGG 58.863 50.000 0.00 0.00 0.00 3.51
2355 2682 9.431887 GGGGAGTACTTTTTAAATTTGGAAATC 57.568 33.333 0.00 0.00 0.00 2.17
2356 2683 9.135843 GGGAGTACTTTTTAAATTTGGAAATCG 57.864 33.333 0.00 0.56 0.00 3.34
2442 2769 3.433343 TGTCCCCGACAGTACAATAGAA 58.567 45.455 0.00 0.00 37.67 2.10
2443 2770 4.028131 TGTCCCCGACAGTACAATAGAAT 58.972 43.478 0.00 0.00 37.67 2.40
2444 2771 5.202765 TGTCCCCGACAGTACAATAGAATA 58.797 41.667 0.00 0.00 37.67 1.75
2445 2772 5.301045 TGTCCCCGACAGTACAATAGAATAG 59.699 44.000 0.00 0.00 37.67 1.73
2598 2940 7.387119 TGTATGTGTACACTACTTGTAGAGG 57.613 40.000 25.60 8.27 41.58 3.69
2618 2960 1.488525 CACATGTGTGCGACTGACG 59.511 57.895 18.03 0.00 45.66 4.35
2667 3009 9.793259 AAACAATATATATGGGTGTGTCTAAGG 57.207 33.333 2.13 0.00 0.00 2.69
2668 3010 7.394816 ACAATATATATGGGTGTGTCTAAGGC 58.605 38.462 2.13 0.00 0.00 4.35
2669 3011 7.017155 ACAATATATATGGGTGTGTCTAAGGCA 59.983 37.037 2.13 0.00 0.00 4.75
2670 3012 3.560636 ATATGGGTGTGTCTAAGGCAC 57.439 47.619 0.00 0.00 37.37 5.01
2671 3013 1.064003 ATGGGTGTGTCTAAGGCACA 58.936 50.000 2.43 2.43 43.60 4.57
2672 3014 1.064003 TGGGTGTGTCTAAGGCACAT 58.936 50.000 9.73 0.00 46.66 3.21
2673 3015 1.003118 TGGGTGTGTCTAAGGCACATC 59.997 52.381 9.73 9.06 46.66 3.06
2674 3016 1.279271 GGGTGTGTCTAAGGCACATCT 59.721 52.381 15.09 0.00 46.66 2.90
2675 3017 2.500098 GGGTGTGTCTAAGGCACATCTA 59.500 50.000 15.09 0.00 46.66 1.98
2676 3018 3.055385 GGGTGTGTCTAAGGCACATCTAA 60.055 47.826 15.09 0.00 46.66 2.10
2677 3019 4.564821 GGGTGTGTCTAAGGCACATCTAAA 60.565 45.833 15.09 0.00 46.66 1.85
2678 3020 5.186198 GGTGTGTCTAAGGCACATCTAAAT 58.814 41.667 9.73 0.00 46.66 1.40
2679 3021 6.346096 GGTGTGTCTAAGGCACATCTAAATA 58.654 40.000 9.73 0.00 46.66 1.40
2680 3022 6.992715 GGTGTGTCTAAGGCACATCTAAATAT 59.007 38.462 9.73 0.00 46.66 1.28
2681 3023 7.041780 GGTGTGTCTAAGGCACATCTAAATATG 60.042 40.741 9.73 0.00 46.66 1.78
2682 3024 6.483307 TGTGTCTAAGGCACATCTAAATATGC 59.517 38.462 2.43 0.00 41.32 3.14
2683 3025 6.708054 GTGTCTAAGGCACATCTAAATATGCT 59.292 38.462 0.00 0.00 38.18 3.79
2684 3026 6.931281 TGTCTAAGGCACATCTAAATATGCTC 59.069 38.462 0.00 0.00 38.18 4.26
2685 3027 7.158021 GTCTAAGGCACATCTAAATATGCTCT 58.842 38.462 0.00 0.00 38.18 4.09
2686 3028 8.307483 GTCTAAGGCACATCTAAATATGCTCTA 58.693 37.037 0.00 0.00 38.18 2.43
2687 3029 8.870116 TCTAAGGCACATCTAAATATGCTCTAA 58.130 33.333 0.00 0.00 38.18 2.10
2688 3030 9.664332 CTAAGGCACATCTAAATATGCTCTAAT 57.336 33.333 0.00 0.00 38.18 1.73
2689 3031 8.930846 AAGGCACATCTAAATATGCTCTAATT 57.069 30.769 0.00 0.00 38.18 1.40
2704 3046 8.915057 ATGCTCTAATTATTGCACATCTAAGT 57.085 30.769 12.67 0.00 38.29 2.24
2706 3048 9.830975 TGCTCTAATTATTGCACATCTAAGTAA 57.169 29.630 8.01 0.00 0.00 2.24
2717 3059 7.974675 TGCACATCTAAGTAAGTAAATCAAGC 58.025 34.615 0.00 0.00 0.00 4.01
2718 3060 7.606073 TGCACATCTAAGTAAGTAAATCAAGCA 59.394 33.333 0.00 0.00 0.00 3.91
2719 3061 8.616076 GCACATCTAAGTAAGTAAATCAAGCAT 58.384 33.333 0.00 0.00 0.00 3.79
2763 3105 9.442047 AGAGAAAGAAAATATTCACACGAATCT 57.558 29.630 0.00 0.00 41.09 2.40
2764 3106 9.695884 GAGAAAGAAAATATTCACACGAATCTC 57.304 33.333 0.00 0.00 41.09 2.75
2765 3107 9.219603 AGAAAGAAAATATTCACACGAATCTCA 57.780 29.630 0.00 0.00 41.09 3.27
2766 3108 9.825972 GAAAGAAAATATTCACACGAATCTCAA 57.174 29.630 0.00 0.00 41.09 3.02
2768 3110 9.778993 AAGAAAATATTCACACGAATCTCAATG 57.221 29.630 0.00 0.00 41.09 2.82
2769 3111 8.950210 AGAAAATATTCACACGAATCTCAATGT 58.050 29.630 0.00 0.00 41.09 2.71
2770 3112 8.900511 AAAATATTCACACGAATCTCAATGTG 57.099 30.769 0.00 0.00 41.09 3.21
2771 3113 7.615582 AATATTCACACGAATCTCAATGTGT 57.384 32.000 3.39 0.00 45.79 3.72
2776 3118 5.947228 ACACGAATCTCAATGTGTGAATT 57.053 34.783 0.00 0.00 43.42 2.17
2778 3120 7.433708 ACACGAATCTCAATGTGTGAATTAA 57.566 32.000 0.00 0.00 43.42 1.40
2779 3121 8.044060 ACACGAATCTCAATGTGTGAATTAAT 57.956 30.769 0.00 0.00 43.42 1.40
2780 3122 7.964559 ACACGAATCTCAATGTGTGAATTAATG 59.035 33.333 0.00 0.00 43.42 1.90
2781 3123 8.177013 CACGAATCTCAATGTGTGAATTAATGA 58.823 33.333 0.00 0.00 35.22 2.57
2782 3124 8.896744 ACGAATCTCAATGTGTGAATTAATGAT 58.103 29.630 0.00 0.00 35.22 2.45
2809 3151 9.712305 ATGACTTAGATGTACAATACTTATGGC 57.288 33.333 0.00 0.00 0.00 4.40
2810 3152 8.700973 TGACTTAGATGTACAATACTTATGGCA 58.299 33.333 0.00 0.00 0.00 4.92
2811 3153 8.888579 ACTTAGATGTACAATACTTATGGCAC 57.111 34.615 0.00 0.00 0.00 5.01
2824 3166 2.666085 TGGCACATCTAGACGTGGT 58.334 52.632 19.70 2.05 33.62 4.16
2825 3167 0.973632 TGGCACATCTAGACGTGGTT 59.026 50.000 19.70 0.00 33.62 3.67
2826 3168 1.346395 TGGCACATCTAGACGTGGTTT 59.654 47.619 19.70 0.00 33.62 3.27
2827 3169 2.563620 TGGCACATCTAGACGTGGTTTA 59.436 45.455 19.70 0.00 33.62 2.01
2828 3170 3.187700 GGCACATCTAGACGTGGTTTAG 58.812 50.000 19.70 0.00 33.62 1.85
2829 3171 2.603560 GCACATCTAGACGTGGTTTAGC 59.396 50.000 19.70 1.16 33.62 3.09
2830 3172 3.845178 CACATCTAGACGTGGTTTAGCA 58.155 45.455 11.11 0.00 0.00 3.49
2831 3173 4.242475 CACATCTAGACGTGGTTTAGCAA 58.758 43.478 11.11 0.00 0.00 3.91
2832 3174 4.688879 CACATCTAGACGTGGTTTAGCAAA 59.311 41.667 11.11 0.00 0.00 3.68
2833 3175 5.178623 CACATCTAGACGTGGTTTAGCAAAA 59.821 40.000 11.11 0.00 0.00 2.44
2834 3176 5.178809 ACATCTAGACGTGGTTTAGCAAAAC 59.821 40.000 0.00 0.00 43.58 2.43
2835 3177 4.952460 TCTAGACGTGGTTTAGCAAAACT 58.048 39.130 0.00 0.00 43.76 2.66
2836 3178 3.963383 AGACGTGGTTTAGCAAAACTG 57.037 42.857 0.00 0.00 43.76 3.16
2837 3179 3.275999 AGACGTGGTTTAGCAAAACTGT 58.724 40.909 0.00 0.00 43.76 3.55
2838 3180 4.444536 AGACGTGGTTTAGCAAAACTGTA 58.555 39.130 0.00 0.00 43.76 2.74
2839 3181 5.061179 AGACGTGGTTTAGCAAAACTGTAT 58.939 37.500 0.00 0.00 43.76 2.29
2840 3182 6.225318 AGACGTGGTTTAGCAAAACTGTATA 58.775 36.000 0.00 0.00 43.76 1.47
2841 3183 6.877322 AGACGTGGTTTAGCAAAACTGTATAT 59.123 34.615 0.00 0.00 43.76 0.86
2842 3184 8.036575 AGACGTGGTTTAGCAAAACTGTATATA 58.963 33.333 0.00 0.00 43.76 0.86
2843 3185 8.726870 ACGTGGTTTAGCAAAACTGTATATAT 57.273 30.769 0.00 0.00 43.76 0.86
2844 3186 9.820725 ACGTGGTTTAGCAAAACTGTATATATA 57.179 29.630 0.00 0.00 43.76 0.86
2875 3217 4.274978 TGGATGGATGGCAATATAGCATG 58.725 43.478 0.00 0.00 35.83 4.06
2905 3247 7.849496 TGATTTGATTTGAAACCATTTTGACG 58.151 30.769 0.00 0.00 0.00 4.35
2910 3252 8.514136 TGATTTGAAACCATTTTGACGTATTC 57.486 30.769 0.00 0.00 0.00 1.75
2916 3258 6.642683 AACCATTTTGACGTATTCTACTCG 57.357 37.500 0.00 0.00 0.00 4.18
2917 3259 5.717119 ACCATTTTGACGTATTCTACTCGT 58.283 37.500 0.00 0.00 40.49 4.18
2918 3260 6.855836 ACCATTTTGACGTATTCTACTCGTA 58.144 36.000 0.00 0.00 37.92 3.43
2919 3261 6.749118 ACCATTTTGACGTATTCTACTCGTAC 59.251 38.462 0.00 0.00 37.92 3.67
2920 3262 6.971184 CCATTTTGACGTATTCTACTCGTACT 59.029 38.462 0.00 0.00 37.92 2.73
2921 3263 8.124823 CCATTTTGACGTATTCTACTCGTACTA 58.875 37.037 0.00 0.00 37.92 1.82
2922 3264 8.941923 CATTTTGACGTATTCTACTCGTACTAC 58.058 37.037 0.00 0.00 37.92 2.73
2925 3267 7.916128 TGACGTATTCTACTCGTACTACTAC 57.084 40.000 0.00 0.00 37.92 2.73
2961 3303 0.616371 TGGGGACGTGATGGTTTAGG 59.384 55.000 0.00 0.00 0.00 2.69
2963 3305 0.746923 GGGACGTGATGGTTTAGGGC 60.747 60.000 0.00 0.00 0.00 5.19
2964 3306 0.252197 GGACGTGATGGTTTAGGGCT 59.748 55.000 0.00 0.00 0.00 5.19
2965 3307 1.653151 GACGTGATGGTTTAGGGCTC 58.347 55.000 0.00 0.00 0.00 4.70
2967 3309 0.810031 CGTGATGGTTTAGGGCTCCG 60.810 60.000 0.00 0.00 0.00 4.63
2968 3310 0.539986 GTGATGGTTTAGGGCTCCGA 59.460 55.000 0.00 0.00 0.00 4.55
2969 3311 1.141053 GTGATGGTTTAGGGCTCCGAT 59.859 52.381 0.00 0.00 0.00 4.18
2970 3312 1.140852 TGATGGTTTAGGGCTCCGATG 59.859 52.381 0.00 0.00 0.00 3.84
2971 3313 0.179018 ATGGTTTAGGGCTCCGATGC 60.179 55.000 0.00 0.00 0.00 3.91
2972 3314 1.271840 TGGTTTAGGGCTCCGATGCT 61.272 55.000 0.00 0.00 0.00 3.79
2973 3315 0.107165 GGTTTAGGGCTCCGATGCTT 60.107 55.000 0.00 0.00 0.00 3.91
2974 3316 1.300481 GTTTAGGGCTCCGATGCTTC 58.700 55.000 0.00 0.00 0.00 3.86
2975 3317 1.134371 GTTTAGGGCTCCGATGCTTCT 60.134 52.381 0.00 0.00 0.00 2.85
2976 3318 0.753262 TTAGGGCTCCGATGCTTCTC 59.247 55.000 0.00 0.00 0.00 2.87
2977 3319 0.397114 TAGGGCTCCGATGCTTCTCA 60.397 55.000 0.00 0.00 0.00 3.27
2978 3320 1.053264 AGGGCTCCGATGCTTCTCAT 61.053 55.000 0.00 0.00 38.32 2.90
2979 3321 0.883814 GGGCTCCGATGCTTCTCATG 60.884 60.000 0.00 0.00 35.05 3.07
2980 3322 1.505477 GGCTCCGATGCTTCTCATGC 61.505 60.000 0.00 0.00 35.05 4.06
2981 3323 0.532417 GCTCCGATGCTTCTCATGCT 60.532 55.000 0.00 0.00 35.05 3.79
2982 3324 1.500108 CTCCGATGCTTCTCATGCTC 58.500 55.000 0.00 0.00 35.05 4.26
2983 3325 0.105593 TCCGATGCTTCTCATGCTCC 59.894 55.000 0.00 0.00 35.05 4.70
2984 3326 0.106335 CCGATGCTTCTCATGCTCCT 59.894 55.000 0.00 0.00 35.05 3.69
2985 3327 1.342496 CCGATGCTTCTCATGCTCCTA 59.658 52.381 0.00 0.00 35.05 2.94
2986 3328 2.028294 CCGATGCTTCTCATGCTCCTAT 60.028 50.000 0.00 0.00 35.05 2.57
2987 3329 3.252400 CGATGCTTCTCATGCTCCTATC 58.748 50.000 0.00 0.00 35.05 2.08
2988 3330 3.598299 GATGCTTCTCATGCTCCTATCC 58.402 50.000 0.00 0.00 35.05 2.59
2989 3331 1.696336 TGCTTCTCATGCTCCTATCCC 59.304 52.381 0.00 0.00 0.00 3.85
2990 3332 1.003003 GCTTCTCATGCTCCTATCCCC 59.997 57.143 0.00 0.00 0.00 4.81
2991 3333 1.274728 CTTCTCATGCTCCTATCCCCG 59.725 57.143 0.00 0.00 0.00 5.73
2992 3334 0.482887 TCTCATGCTCCTATCCCCGA 59.517 55.000 0.00 0.00 0.00 5.14
2993 3335 1.077828 TCTCATGCTCCTATCCCCGAT 59.922 52.381 0.00 0.00 0.00 4.18
2994 3336 1.206610 CTCATGCTCCTATCCCCGATG 59.793 57.143 0.00 0.00 0.00 3.84
2995 3337 0.251354 CATGCTCCTATCCCCGATGG 59.749 60.000 0.00 0.00 0.00 3.51
2996 3338 1.557269 ATGCTCCTATCCCCGATGGC 61.557 60.000 0.00 0.00 0.00 4.40
2997 3339 1.915769 GCTCCTATCCCCGATGGCT 60.916 63.158 0.00 0.00 0.00 4.75
2998 3340 1.978473 CTCCTATCCCCGATGGCTG 59.022 63.158 0.00 0.00 0.00 4.85
2999 3341 0.542938 CTCCTATCCCCGATGGCTGA 60.543 60.000 0.00 0.00 0.00 4.26
3000 3342 0.542938 TCCTATCCCCGATGGCTGAG 60.543 60.000 0.00 0.00 0.00 3.35
3001 3343 1.294780 CTATCCCCGATGGCTGAGC 59.705 63.158 0.00 0.00 0.00 4.26
3002 3344 1.459348 TATCCCCGATGGCTGAGCA 60.459 57.895 6.82 0.00 0.00 4.26
3003 3345 1.475169 TATCCCCGATGGCTGAGCAG 61.475 60.000 6.82 0.00 0.00 4.24
3004 3346 4.559063 CCCCGATGGCTGAGCAGG 62.559 72.222 6.82 3.58 0.00 4.85
3012 3354 3.887783 GCTGAGCAGGCTCTGTTC 58.112 61.111 23.30 9.21 43.12 3.18
3013 3355 1.744741 GCTGAGCAGGCTCTGTTCC 60.745 63.158 23.30 8.61 40.22 3.62
3014 3356 1.981636 CTGAGCAGGCTCTGTTCCT 59.018 57.895 20.79 0.42 40.22 3.36
3015 3357 1.189752 CTGAGCAGGCTCTGTTCCTA 58.810 55.000 20.79 0.00 40.22 2.94
3016 3358 1.136695 CTGAGCAGGCTCTGTTCCTAG 59.863 57.143 20.79 5.63 40.22 3.02
3017 3359 1.272704 TGAGCAGGCTCTGTTCCTAGA 60.273 52.381 20.79 0.00 40.22 2.43
3018 3360 1.827969 GAGCAGGCTCTGTTCCTAGAA 59.172 52.381 13.83 0.00 36.05 2.10
3019 3361 1.830477 AGCAGGCTCTGTTCCTAGAAG 59.170 52.381 0.00 0.00 33.43 2.85
3020 3362 1.552792 GCAGGCTCTGTTCCTAGAAGT 59.447 52.381 0.00 0.00 33.43 3.01
3021 3363 2.418060 GCAGGCTCTGTTCCTAGAAGTC 60.418 54.545 0.00 0.00 33.43 3.01
3022 3364 3.096092 CAGGCTCTGTTCCTAGAAGTCT 58.904 50.000 0.00 0.00 31.52 3.24
3023 3365 3.096092 AGGCTCTGTTCCTAGAAGTCTG 58.904 50.000 0.00 0.00 30.79 3.51
3024 3366 2.418060 GGCTCTGTTCCTAGAAGTCTGC 60.418 54.545 0.00 0.00 0.00 4.26
3025 3367 2.733858 GCTCTGTTCCTAGAAGTCTGCG 60.734 54.545 0.00 0.00 0.00 5.18
3026 3368 1.202582 TCTGTTCCTAGAAGTCTGCGC 59.797 52.381 0.00 0.00 0.00 6.09
3027 3369 1.203523 CTGTTCCTAGAAGTCTGCGCT 59.796 52.381 9.73 0.00 0.00 5.92
3028 3370 1.618837 TGTTCCTAGAAGTCTGCGCTT 59.381 47.619 9.73 0.00 0.00 4.68
3029 3371 2.263945 GTTCCTAGAAGTCTGCGCTTC 58.736 52.381 9.73 3.63 43.72 3.86
3030 3372 0.452184 TCCTAGAAGTCTGCGCTTCG 59.548 55.000 9.73 0.00 46.82 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 144 6.078202 ACTCCTACAACATCATAGACATCG 57.922 41.667 0.00 0.00 0.00 3.84
206 212 4.495019 CGCTGTTGTTTTGTTGTACTAGCA 60.495 41.667 0.00 0.00 0.00 3.49
227 233 7.483059 GGCAGCATTATATCTTTTCTTATTCGC 59.517 37.037 0.00 0.00 0.00 4.70
571 835 6.705863 AGAAGAAGATGGAAATTATGTGCC 57.294 37.500 0.00 0.00 0.00 5.01
602 866 4.261867 GCCTCGCCCTCTTCTTTTTAAAAA 60.262 41.667 12.62 12.62 0.00 1.94
605 869 2.433436 GCCTCGCCCTCTTCTTTTTAA 58.567 47.619 0.00 0.00 0.00 1.52
606 870 1.339727 GGCCTCGCCCTCTTCTTTTTA 60.340 52.381 0.00 0.00 44.06 1.52
608 872 1.002011 GGCCTCGCCCTCTTCTTTT 60.002 57.895 0.00 0.00 44.06 2.27
609 873 2.671682 GGCCTCGCCCTCTTCTTT 59.328 61.111 0.00 0.00 44.06 2.52
644 908 6.817184 ACTATAGTTGTACCTTGCACCATAG 58.183 40.000 0.00 0.00 0.00 2.23
705 985 2.888464 TTCGCGGGTCACCAAAACCA 62.888 55.000 6.13 0.00 38.62 3.67
709 989 2.490165 TTTTTCGCGGGTCACCAAA 58.510 47.368 6.13 0.00 36.13 3.28
844 1125 1.205966 TTATGGGTTACCGGGTCTGG 58.794 55.000 6.32 0.00 40.75 3.86
861 1142 5.212194 GTTCGTATATAAGCGGGTCGTTTA 58.788 41.667 0.00 0.00 37.02 2.01
946 1228 3.509137 TTGCCGTCGGTGGTCTGTC 62.509 63.158 13.94 0.00 0.00 3.51
973 1255 1.448893 TCGGTGGAGCATTAACGCC 60.449 57.895 0.00 0.00 0.00 5.68
1101 1389 2.257371 CGGAACTCGAAGTCGCCA 59.743 61.111 0.00 0.00 42.43 5.69
1173 1461 0.458260 GGAGGAGAGGAACGAGCTTC 59.542 60.000 0.00 0.00 0.00 3.86
1182 1470 1.305633 CAGCAGTGGGAGGAGAGGA 60.306 63.158 0.00 0.00 0.00 3.71
1194 1482 2.249413 CTGAGGCGGGATTCAGCAGT 62.249 60.000 0.00 0.00 34.94 4.40
1320 1608 0.039165 CGGCTTTGGGCTTCTTTGTC 60.039 55.000 0.00 0.00 41.46 3.18
1357 1645 4.821589 CCCCAGAGACGCTTCCGC 62.822 72.222 0.00 0.00 38.22 5.54
1422 1710 2.520741 GAGGAGGCCGAGGAGGAG 60.521 72.222 0.00 0.00 45.00 3.69
1945 2233 1.746991 CGGCCTTCTTCTCCTTGGC 60.747 63.158 0.00 0.00 42.56 4.52
2130 2418 4.988598 ACAACAGGAGCGGCGGTG 62.989 66.667 19.47 4.54 0.00 4.94
2133 2421 1.517257 CTAGACAACAGGAGCGGCG 60.517 63.158 0.51 0.51 0.00 6.46
2136 2427 1.272490 TGGTTCTAGACAACAGGAGCG 59.728 52.381 0.00 0.00 0.00 5.03
2148 2439 8.256605 TCTGAAATTTGAGAGATCTGGTTCTAG 58.743 37.037 0.00 0.00 0.00 2.43
2155 2446 6.907206 GGTCTCTGAAATTTGAGAGATCTG 57.093 41.667 31.37 11.42 46.50 2.90
2212 2515 8.858003 TCATGAGTAATCTTCTTTACATCGAC 57.142 34.615 0.00 0.00 35.05 4.20
2223 2526 8.439286 GTGTTCTTCTGTTCATGAGTAATCTTC 58.561 37.037 0.00 0.00 0.00 2.87
2226 2529 7.897575 AGTGTTCTTCTGTTCATGAGTAATC 57.102 36.000 0.00 0.00 0.00 1.75
2263 2589 8.687824 TTTTTGAAAAGTTCACAGTGATCTTC 57.312 30.769 21.97 13.97 39.87 2.87
2291 2617 8.511604 TTTCACAGTGATCTTCTTCTCTTTTT 57.488 30.769 3.45 0.00 0.00 1.94
2292 2618 8.688747 ATTTCACAGTGATCTTCTTCTCTTTT 57.311 30.769 3.45 0.00 0.00 2.27
2293 2619 7.117523 CGATTTCACAGTGATCTTCTTCTCTTT 59.882 37.037 3.45 0.00 0.00 2.52
2294 2620 6.589523 CGATTTCACAGTGATCTTCTTCTCTT 59.410 38.462 3.45 0.00 0.00 2.85
2295 2621 6.098679 CGATTTCACAGTGATCTTCTTCTCT 58.901 40.000 3.45 0.00 0.00 3.10
2296 2622 5.290643 CCGATTTCACAGTGATCTTCTTCTC 59.709 44.000 3.45 0.00 0.00 2.87
2297 2623 5.047021 TCCGATTTCACAGTGATCTTCTTCT 60.047 40.000 3.45 0.00 0.00 2.85
2298 2624 5.171476 TCCGATTTCACAGTGATCTTCTTC 58.829 41.667 3.45 0.00 0.00 2.87
2330 2656 9.135843 CGATTTCCAAATTTAAAAAGTACTCCC 57.864 33.333 0.00 0.00 0.00 4.30
2355 2682 1.721487 GATTTGACGCCACATCCCG 59.279 57.895 0.00 0.00 0.00 5.14
2356 2683 1.721487 CGATTTGACGCCACATCCC 59.279 57.895 0.00 0.00 0.00 3.85
2526 2868 2.529136 CCACAGGTGGGAGGGTGA 60.529 66.667 10.67 0.00 46.81 4.02
2544 2886 4.425577 AAGAGGCTTTTGAATTGTAGCG 57.574 40.909 0.00 0.00 34.50 4.26
2618 2960 3.391506 AAAAACTCCAAATGCAGGCTC 57.608 42.857 0.00 0.00 0.00 4.70
2658 3000 6.892691 GCATATTTAGATGTGCCTTAGACAC 58.107 40.000 3.86 0.00 42.56 3.67
2679 3021 8.915057 ACTTAGATGTGCAATAATTAGAGCAT 57.085 30.769 15.14 3.63 39.43 3.79
2680 3022 9.830975 TTACTTAGATGTGCAATAATTAGAGCA 57.169 29.630 9.76 9.76 34.10 4.26
2691 3033 8.450964 GCTTGATTTACTTACTTAGATGTGCAA 58.549 33.333 0.00 0.00 0.00 4.08
2692 3034 7.606073 TGCTTGATTTACTTACTTAGATGTGCA 59.394 33.333 0.00 0.00 0.00 4.57
2693 3035 7.974675 TGCTTGATTTACTTACTTAGATGTGC 58.025 34.615 0.00 0.00 0.00 4.57
2737 3079 9.442047 AGATTCGTGTGAATATTTTCTTTCTCT 57.558 29.630 0.00 0.00 44.79 3.10
2738 3080 9.695884 GAGATTCGTGTGAATATTTTCTTTCTC 57.304 33.333 0.00 0.00 44.79 2.87
2739 3081 9.219603 TGAGATTCGTGTGAATATTTTCTTTCT 57.780 29.630 0.00 0.00 44.79 2.52
2740 3082 9.825972 TTGAGATTCGTGTGAATATTTTCTTTC 57.174 29.630 0.00 0.00 44.79 2.62
2742 3084 9.778993 CATTGAGATTCGTGTGAATATTTTCTT 57.221 29.630 0.00 0.00 44.79 2.52
2743 3085 8.950210 ACATTGAGATTCGTGTGAATATTTTCT 58.050 29.630 0.00 0.00 44.79 2.52
2744 3086 9.003112 CACATTGAGATTCGTGTGAATATTTTC 57.997 33.333 8.02 0.00 44.79 2.29
2745 3087 8.514594 ACACATTGAGATTCGTGTGAATATTTT 58.485 29.630 16.26 0.00 44.79 1.82
2746 3088 8.044060 ACACATTGAGATTCGTGTGAATATTT 57.956 30.769 16.26 0.00 44.79 1.40
2747 3089 7.615582 ACACATTGAGATTCGTGTGAATATT 57.384 32.000 16.26 0.00 44.79 1.28
2754 3096 5.947228 AATTCACACATTGAGATTCGTGT 57.053 34.783 0.00 0.00 43.12 4.49
2755 3097 8.177013 TCATTAATTCACACATTGAGATTCGTG 58.823 33.333 0.00 0.00 34.94 4.35
2756 3098 8.267620 TCATTAATTCACACATTGAGATTCGT 57.732 30.769 0.00 0.00 34.94 3.85
2783 3125 9.712305 GCCATAAGTATTGTACATCTAAGTCAT 57.288 33.333 0.00 0.00 0.00 3.06
2784 3126 8.700973 TGCCATAAGTATTGTACATCTAAGTCA 58.299 33.333 0.00 0.00 0.00 3.41
2785 3127 8.979574 GTGCCATAAGTATTGTACATCTAAGTC 58.020 37.037 0.00 0.00 0.00 3.01
2786 3128 8.482943 TGTGCCATAAGTATTGTACATCTAAGT 58.517 33.333 0.00 0.00 0.00 2.24
2787 3129 8.887036 TGTGCCATAAGTATTGTACATCTAAG 57.113 34.615 0.00 0.00 0.00 2.18
2788 3130 9.489084 GATGTGCCATAAGTATTGTACATCTAA 57.511 33.333 18.32 0.00 42.57 2.10
2790 3132 7.739825 AGATGTGCCATAAGTATTGTACATCT 58.260 34.615 20.68 20.68 46.59 2.90
2791 3133 7.969536 AGATGTGCCATAAGTATTGTACATC 57.030 36.000 18.10 18.10 44.31 3.06
2792 3134 8.870116 TCTAGATGTGCCATAAGTATTGTACAT 58.130 33.333 0.00 6.01 37.36 2.29
2793 3135 8.141909 GTCTAGATGTGCCATAAGTATTGTACA 58.858 37.037 0.00 0.00 30.93 2.90
2794 3136 7.326305 CGTCTAGATGTGCCATAAGTATTGTAC 59.674 40.741 3.59 0.00 0.00 2.90
2795 3137 7.013942 ACGTCTAGATGTGCCATAAGTATTGTA 59.986 37.037 16.90 0.00 0.00 2.41
2796 3138 6.183360 ACGTCTAGATGTGCCATAAGTATTGT 60.183 38.462 16.90 0.00 0.00 2.71
2797 3139 6.144563 CACGTCTAGATGTGCCATAAGTATTG 59.855 42.308 27.60 4.40 40.88 1.90
2798 3140 6.216569 CACGTCTAGATGTGCCATAAGTATT 58.783 40.000 27.60 0.00 40.88 1.89
2799 3141 5.279006 CCACGTCTAGATGTGCCATAAGTAT 60.279 44.000 31.51 0.00 44.71 2.12
2800 3142 4.037565 CCACGTCTAGATGTGCCATAAGTA 59.962 45.833 31.51 0.00 44.71 2.24
2801 3143 3.181475 CCACGTCTAGATGTGCCATAAGT 60.181 47.826 31.51 0.30 44.71 2.24
2802 3144 3.181475 ACCACGTCTAGATGTGCCATAAG 60.181 47.826 31.51 21.53 44.71 1.73
2803 3145 2.764010 ACCACGTCTAGATGTGCCATAA 59.236 45.455 31.51 0.00 44.71 1.90
2804 3146 2.384828 ACCACGTCTAGATGTGCCATA 58.615 47.619 31.51 0.00 44.71 2.74
2805 3147 1.195115 ACCACGTCTAGATGTGCCAT 58.805 50.000 31.51 19.55 44.71 4.40
2806 3148 0.973632 AACCACGTCTAGATGTGCCA 59.026 50.000 31.51 0.00 44.71 4.92
2807 3149 2.094762 AAACCACGTCTAGATGTGCC 57.905 50.000 31.51 3.56 44.71 5.01
2808 3150 2.603560 GCTAAACCACGTCTAGATGTGC 59.396 50.000 31.51 19.48 44.71 4.57
2809 3151 3.845178 TGCTAAACCACGTCTAGATGTG 58.155 45.455 30.42 30.42 45.43 3.21
2810 3152 4.530710 TTGCTAAACCACGTCTAGATGT 57.469 40.909 11.99 11.99 0.00 3.06
2811 3153 5.408604 AGTTTTGCTAAACCACGTCTAGATG 59.591 40.000 18.22 10.54 43.77 2.90
2812 3154 5.408604 CAGTTTTGCTAAACCACGTCTAGAT 59.591 40.000 18.22 0.00 43.77 1.98
2813 3155 4.748102 CAGTTTTGCTAAACCACGTCTAGA 59.252 41.667 18.22 0.00 43.77 2.43
2814 3156 4.510340 ACAGTTTTGCTAAACCACGTCTAG 59.490 41.667 18.22 3.78 43.77 2.43
2815 3157 4.444536 ACAGTTTTGCTAAACCACGTCTA 58.555 39.130 18.22 0.00 43.77 2.59
2816 3158 3.275999 ACAGTTTTGCTAAACCACGTCT 58.724 40.909 18.22 0.00 43.77 4.18
2817 3159 3.685836 ACAGTTTTGCTAAACCACGTC 57.314 42.857 18.22 0.00 43.77 4.34
2818 3160 8.726870 ATATATACAGTTTTGCTAAACCACGT 57.273 30.769 18.22 15.18 43.77 4.49
2847 3189 9.114938 TGCTATATTGCCATCCATCCATATATA 57.885 33.333 6.69 0.00 0.00 0.86
2848 3190 7.992295 TGCTATATTGCCATCCATCCATATAT 58.008 34.615 6.69 0.00 0.00 0.86
2849 3191 7.391388 TGCTATATTGCCATCCATCCATATA 57.609 36.000 6.69 0.00 0.00 0.86
2850 3192 6.270219 TGCTATATTGCCATCCATCCATAT 57.730 37.500 6.69 0.00 0.00 1.78
2851 3193 5.713760 TGCTATATTGCCATCCATCCATA 57.286 39.130 6.69 0.00 0.00 2.74
2852 3194 4.596354 TGCTATATTGCCATCCATCCAT 57.404 40.909 6.69 0.00 0.00 3.41
2853 3195 4.274978 CATGCTATATTGCCATCCATCCA 58.725 43.478 6.69 0.00 0.00 3.41
2854 3196 3.635373 CCATGCTATATTGCCATCCATCC 59.365 47.826 6.69 0.00 0.00 3.51
2855 3197 4.097437 CACCATGCTATATTGCCATCCATC 59.903 45.833 6.69 0.00 0.00 3.51
2875 3217 4.630111 TGGTTTCAAATCAAATCAGCACC 58.370 39.130 0.00 0.00 0.00 5.01
2905 3247 7.492669 TGTGTGGTAGTAGTACGAGTAGAATAC 59.507 40.741 1.63 0.00 43.47 1.89
2910 3252 5.007430 CCATGTGTGGTAGTAGTACGAGTAG 59.993 48.000 1.63 0.00 40.83 2.57
2916 3258 3.368248 TCCCCATGTGTGGTAGTAGTAC 58.632 50.000 0.00 0.00 44.48 2.73
2917 3259 3.761685 TCCCCATGTGTGGTAGTAGTA 57.238 47.619 0.00 0.00 44.48 1.82
2918 3260 2.634639 TCCCCATGTGTGGTAGTAGT 57.365 50.000 0.00 0.00 44.48 2.73
2919 3261 3.309296 AGATCCCCATGTGTGGTAGTAG 58.691 50.000 0.00 0.00 44.48 2.57
2920 3262 3.052109 AGAGATCCCCATGTGTGGTAGTA 60.052 47.826 0.00 0.00 44.48 1.82
2921 3263 2.119495 GAGATCCCCATGTGTGGTAGT 58.881 52.381 0.00 0.00 44.48 2.73
2922 3264 2.103771 CAGAGATCCCCATGTGTGGTAG 59.896 54.545 0.00 0.00 44.48 3.18
2925 3267 0.182061 CCAGAGATCCCCATGTGTGG 59.818 60.000 0.00 0.00 45.61 4.17
2942 3284 0.616371 CCTAAACCATCACGTCCCCA 59.384 55.000 0.00 0.00 0.00 4.96
2961 3303 1.505477 GCATGAGAAGCATCGGAGCC 61.505 60.000 0.00 0.00 34.15 4.70
2963 3305 1.500108 GAGCATGAGAAGCATCGGAG 58.500 55.000 0.00 0.00 34.15 4.63
2964 3306 0.105593 GGAGCATGAGAAGCATCGGA 59.894 55.000 0.00 0.00 34.15 4.55
2965 3307 0.106335 AGGAGCATGAGAAGCATCGG 59.894 55.000 0.00 0.00 34.15 4.18
2967 3309 3.598299 GGATAGGAGCATGAGAAGCATC 58.402 50.000 0.00 0.00 34.15 3.91
2968 3310 2.305343 GGGATAGGAGCATGAGAAGCAT 59.695 50.000 0.00 0.00 37.85 3.79
2969 3311 1.696336 GGGATAGGAGCATGAGAAGCA 59.304 52.381 0.00 0.00 0.00 3.91
2970 3312 1.003003 GGGGATAGGAGCATGAGAAGC 59.997 57.143 0.00 0.00 0.00 3.86
2971 3313 1.274728 CGGGGATAGGAGCATGAGAAG 59.725 57.143 0.00 0.00 0.00 2.85
2972 3314 1.133167 TCGGGGATAGGAGCATGAGAA 60.133 52.381 0.00 0.00 0.00 2.87
2973 3315 0.482887 TCGGGGATAGGAGCATGAGA 59.517 55.000 0.00 0.00 0.00 3.27
2974 3316 1.206610 CATCGGGGATAGGAGCATGAG 59.793 57.143 0.00 0.00 0.00 2.90
2975 3317 1.269958 CATCGGGGATAGGAGCATGA 58.730 55.000 0.00 0.00 0.00 3.07
2976 3318 0.251354 CCATCGGGGATAGGAGCATG 59.749 60.000 0.00 0.00 40.01 4.06
2977 3319 1.557269 GCCATCGGGGATAGGAGCAT 61.557 60.000 0.00 0.00 40.01 3.79
2978 3320 2.217038 GCCATCGGGGATAGGAGCA 61.217 63.158 0.00 0.00 40.01 4.26
2979 3321 1.915769 AGCCATCGGGGATAGGAGC 60.916 63.158 0.00 0.00 40.01 4.70
2980 3322 0.542938 TCAGCCATCGGGGATAGGAG 60.543 60.000 0.00 0.00 40.01 3.69
2981 3323 0.542938 CTCAGCCATCGGGGATAGGA 60.543 60.000 0.00 0.00 40.01 2.94
2982 3324 1.978473 CTCAGCCATCGGGGATAGG 59.022 63.158 0.00 0.00 40.01 2.57
2983 3325 1.294780 GCTCAGCCATCGGGGATAG 59.705 63.158 0.00 0.00 40.01 2.08
2984 3326 1.459348 TGCTCAGCCATCGGGGATA 60.459 57.895 0.00 0.00 40.01 2.59
2985 3327 2.769621 TGCTCAGCCATCGGGGAT 60.770 61.111 0.00 0.00 40.01 3.85
2986 3328 3.473647 CTGCTCAGCCATCGGGGA 61.474 66.667 0.00 0.00 40.01 4.81
2987 3329 4.559063 CCTGCTCAGCCATCGGGG 62.559 72.222 0.00 0.00 40.85 5.73
2989 3331 4.172512 AGCCTGCTCAGCCATCGG 62.173 66.667 0.00 0.00 0.00 4.18
2990 3332 2.588314 GAGCCTGCTCAGCCATCG 60.588 66.667 14.07 0.00 42.31 3.84
2991 3333 1.524165 CAGAGCCTGCTCAGCCATC 60.524 63.158 20.38 0.00 44.99 3.51
2992 3334 1.849975 AACAGAGCCTGCTCAGCCAT 61.850 55.000 20.38 1.29 44.99 4.40
2993 3335 2.460662 GAACAGAGCCTGCTCAGCCA 62.461 60.000 20.38 0.00 44.99 4.75
2994 3336 1.744741 GAACAGAGCCTGCTCAGCC 60.745 63.158 20.38 5.54 44.99 4.85
2995 3337 1.744741 GGAACAGAGCCTGCTCAGC 60.745 63.158 20.38 0.00 44.99 4.26
2996 3338 1.136695 CTAGGAACAGAGCCTGCTCAG 59.863 57.143 20.38 15.03 44.99 3.35
2997 3339 1.189752 CTAGGAACAGAGCCTGCTCA 58.810 55.000 20.38 0.00 44.99 4.26
2998 3340 1.479709 TCTAGGAACAGAGCCTGCTC 58.520 55.000 11.17 11.17 43.03 4.26
2999 3341 1.830477 CTTCTAGGAACAGAGCCTGCT 59.170 52.381 0.00 0.00 36.96 4.24
3000 3342 1.552792 ACTTCTAGGAACAGAGCCTGC 59.447 52.381 0.00 0.00 36.96 4.85
3001 3343 3.096092 AGACTTCTAGGAACAGAGCCTG 58.904 50.000 0.00 1.16 36.96 4.85
3002 3344 3.096092 CAGACTTCTAGGAACAGAGCCT 58.904 50.000 0.00 0.00 39.56 4.58
3003 3345 2.418060 GCAGACTTCTAGGAACAGAGCC 60.418 54.545 0.00 0.00 0.00 4.70
3004 3346 2.733858 CGCAGACTTCTAGGAACAGAGC 60.734 54.545 0.00 0.00 0.00 4.09
3005 3347 2.733858 GCGCAGACTTCTAGGAACAGAG 60.734 54.545 0.30 0.00 0.00 3.35
3006 3348 1.202582 GCGCAGACTTCTAGGAACAGA 59.797 52.381 0.30 0.00 0.00 3.41
3007 3349 1.203523 AGCGCAGACTTCTAGGAACAG 59.796 52.381 11.47 0.00 0.00 3.16
3008 3350 1.257743 AGCGCAGACTTCTAGGAACA 58.742 50.000 11.47 0.00 0.00 3.18
3009 3351 2.263945 GAAGCGCAGACTTCTAGGAAC 58.736 52.381 11.47 0.00 42.32 3.62
3010 3352 1.135373 CGAAGCGCAGACTTCTAGGAA 60.135 52.381 11.47 0.00 43.22 3.36
3011 3353 0.452184 CGAAGCGCAGACTTCTAGGA 59.548 55.000 11.47 0.00 43.22 2.94
3012 3354 2.950877 CGAAGCGCAGACTTCTAGG 58.049 57.895 11.47 0.00 43.22 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.