>input_sequence_62539
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-ATGGCCGCCGCCGTCGCCGCAGTGACCTCGCCGGATCTCTTCTCGTTCCACGCGTCCATCGCGCCCTTGCCGGCGCCTC
CGGCGGGCGCTGAA------GACGACGATGGCGACTTCGAGTTCCGCATCCCCGCGGCGGTGGCCGCGCTCTCCGCCGCT
GACGAGCTCTTCTCGGATGGGAAGCTCGTTCCTCTCCTCCCACTGCTGAATCCCGCCTCAGCCTGCTCGGCTCCGCCGTG
CGTGGAGGAGGAGCCTCCCTCGGAGCCCGTCTCTCCCCGCGCGCCGCGGTGCGCTGGGCGGCGGTGGCGTGATCTCCTCC
TCCTCGTGACAAAGAAGCCCAAAGCCGGCGAGGCCAAGGGTCGCGCGGAAGCGTCTCTGGGGCGTCGGGAGGCGCATTCG
CGGCCGCTCCTCTCGCGCGACTCCTCCTCCTCCTCCTCGGCCTCCTCGTGCGACTCCGGCAGGAACGCGCGCCGCCCGCC
GCCGCCGTCACGCCCGCCCCTGCGGACGCGCTCCGCGCCGGTGGCGAGCCTCCTCCACCTCATGTCCAAGAAGAACGCCG
GCGACTGCAGGAACGGCGCCGCCGCGGCCGCTGCCCCGAAGCAGCGCCAGCAGCAGCAGGCGTGCGCGCACCCGCTCCTG
ACCCGGGCCTCCTCGTCGTCCTCGGCCTCCTCCTCGGACTCCGGCAGGAACTCCCGCCCGCCGTGGCACCCGCACGGCCC
CGCGCGGCCATGGCGCCCCGCGATAGCCGCCGAGAGCCCGCGCGTCAGCGCGTCCGGGCGCGTGGTGTTCCGGGGCCTGG
AGCGGTGCTCGAGCACGCCCGCCGCGGCGGGCATCGGCGGCCTGCGGCGGCCGAGGCCGAGGGGCATGGAGCGGTCGTAC
TCGACCAATGTGCGCGTGGATCCGGTGATCAACGTGTTCGGGTTCGGGCACCTGTTCTTCCCAGCTTCGCCGGCCAAGGA
GAAGAAGGCCGACGCCGCGGGCGGCGGCCGGAGGAGCAGGCCGGAGAAGCTGGCGATGATGCTGAGAGATCCGCAGGATT
AG------------------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G462400
TAGCCATGCAACTAGATTTCAAAATTTTAACTCGGT-GAGATACAGATTTAGTGGGCCAAGGTCCATAAGGTATAACATA
TGAGTAGTTCATTTTCTAT---AATCCAATGGCAATATTACCATTACATATTGGGAGGTAAGACGATGTCTATGATGTTG
TAGGAGTAATATGAACATTTATAA-TTTTAAAATAAGAAAACAAATCATATTGCTAGTACAACAAAACAACAGCGAATAA
GAAAAG-ATATAATGCTGCCAATTAATGCTATCTATATCTTCCATTTTGGTTGTGTATAATATAATTTTCAGTATTGGCA
CA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TACAATATATGCTAGTATAACAAAGATTCATGTGGTAAATGATTTCCAAATAAAGCTTATTGTCACACAATACTT
ATGAATCTTTTTCATAGAAACACTTAGTAATGTAGACC--AAAACATGACATTAATA-----------------------
---------------------------------------------------------------------TATAAAATACC
ACATATGAATCTTTTTCATACTACTATAATGATATCACATATGAATATTAAATACAAAATATATAAACATTGAATATTTA
TCATTAAAAATATCACCTTTAGATGTCTCTATGAGGCACATAATTTCCATCTTCTTCTTCTTCTTTTTTTAAAAAGAAGA
GGGCGAGGCCTGCACGGTTGCACAACTCTATGGTGCAAGGTACAACTATAGTTGTTTTCAAAATAAAAATAA--------
--------AACAGTGAGTACAAACTGGTTT-TGGTGACCCGCGAAAAAAGAAAAGGTTTTGGTCAACCACTCCCATATCG
CCAAGACATCAGCCGACGTCGGCACACGCACTGTGCATCGGTTGCCTCGTATACCCTCTTCCCGGGCCCAGAGCCGCCTT
CGTTCCAGACCCGGTAACCCATAAACGACCCGCTTATATACGAAC-CGTTCGTTGACACGGCGACGACGAAGTTAAACAA
CTCCCTCCCTCCTCCCCCGCCCCCGCAGACAGACCACCGACGGCAACCACCTCCGGCGTTAATGCTCCACCGACGCCTCT
AATGGCCGCCGCCGTCGCCGCAGTGACCTCGCCGGATCTCTTCTCGTTCCACGCGTCCATCGCGCCCTTGCCGGCGCCTC
CGGCGGGCGCTGAA------GACGACGATGGCGACTTCGAGTTCCGCATCCCCGCGGCGGTGGCCGCGCTCTCCGCCGCT
GACGAGCTCTTCTCGGATGGGAAGCTCGTTCCTCTCCTCCCACTGCTGAATCCCGCCTCAGCCTGCTCGGCTCCGCCGTG
CGTGGAGGAGGAGCCTCCCTCGGAGCCCGTCTCTCCCCGCGCGCCGCGGTGCGCTGGGCGGCGGTGGCGTGATCTCCTCC
TCCTCGTGACAAAGAAGCCCAAAGCCGGCGAGGCCAAGGGTCGCGCGGAAGCGTCTCTGGGGCGTCGGGAGGCGCATTCG
CGGCCGCTCCTCTCGCGCGACTCCTCCTCCTCCTCCTCGGCCTCCTCGTGCGACTCCGGCAGGAACGCGCGCCGCCCGCC
GCCGCCGTCACGCCCGCCCCTGCGGACGCGCTCCGCGCCGGTGGCGAGCCTCCTCCACCTCATGTCCAAGAAGAACGCCG
GCGACTGCAGGAACGGCGCCGCCGCGGCCGCTGCCCCGAAGCAGCGCCAGCAGCAGCAGGCGTGCGCGCACCCGCTCCTG
ACCCGGGCCTCCTCGTCGTCCTCGGCCTCCTCCTCGGACTCCGGCAGGAACTCCCGCCCGCCGTGGCACCCGCACGGCCC
CGCGCGGCCATGGCGCCCCGCGATAGCCGCCGAGAGCCCGCGCGTCAGCGCGTCCGGGCGCGTGGTGTTCCGGGGCCTGG
AGCGGTGCTCGAGCACGCCCGCCGCGGCGGGCATCGGCGGCCTGCGGCGGCCGAGGCCGAGGGGCATGGAGCGGTCGTAC
TCGACCAATGTGCGCGTGGATCCGGTGATCAACGTGTTCGGGTTCGGGCACCTGTTCTTCCCAGCTTCGCCGGCCAAGGA
GAAGAAGGCCGACGCCGCGGGCGGCGGCCGGAGGAGCAGGCCGGAGAAGCTGGCGATGATGCTGAGAGATCCGCAGGATT
AGGTGGTGGCCATGCTGGAACATAACGCATGAGATTCTTCCTGTCGCGGATTCTTCTCTGTATTTCCCATCTTGTTTTTT
CAGTTTTTTGTAATATACACC---GCCGCTCCTGTTGTCTAGAACCAGATCTCTCAAATTTCAGAGACCTCATGCGAATC
TGAAC------------TGCCATCAGAGTGTCGTGTCGATGTAAAGAAGATTACTCATGAACAGAAGAACAC--------
---------------TTTGCTTCAAGCTGAAGATCACTGTGAACTTTTCAAAAAAAAAAAAGAGAAGAAGATCACTGTGA
AATCGGATGAGGATGGGGAGTAC-TTTTTAAATTTGGAAATCGGGATGTGGCGTCAAATCGCAACAGTTGGAGCAACGGG
ACATCAAAGTTTTGAAATTTATCTGGCTGTCCCCGACAGTACAATAGAATAGATAGGGTGCAGTGACTGCCCTGCCGCTG
---------------GTGGCAGGAAAGGAGAACTGGGTCCGTGATCTGTGCTCTGCTGCCCCCACCCTCACCCTCCCACC
TGTGGCGCTACAATTCAAAAGCCTCTTAAATTTGTTGTATGTGTACACTACTTGTAGAGGACACATGTGTGCGACTGACG
AGCCTGCATTTGGAGTTTTTAAAAACAATATATATGGGTGTGTCTAAGGCACATCTAAATATGCTCTAATTATTGCACAT
CTAAGTAAGTAAATCAAGCATAAAGAAAAAAAGGAAAAAGAGAAAGAAAATATTCACACGAATCTCAATGTGTGAATTAA
TGATATGACTTAGATGTACAATACTTATGGCACATCTAGACGTGGTTTAGCAAAACTGTATATATATATATATATGGATG
GATGGCAATATAGCATGGTGCTGATTTGATTTGAAACCATTTTGACGTATTCTACTCGTACTACTACCACACATGGGGAT
CTCTGGGGACGTGATGGTTTAGGGCTCCGATGCTTCTCATGCTCCTATCCCCGATGGCTGAGCAGGCTCTGTTCCTAGAA
GTCTGCGCTTCGCTTA
>chr2D_1
TAGCCATGGAACTAGATCTCAAAATTTTAACTCGGTCGAGATTCAGATTTATTGGTCCACGGCCCATAAAATATAACATA
TGAGTAGTTCATTATTTTTTTAAATCCAATGGAAATATTGCCATTACATATTGGGAGGTAAGATGATGTCTATGATCTTG
TAGGACTAATATGGGCATTTTTACTTTTTAAAATAGGAAAACAAATCATATCACTAGTACAACAAAACAACACCAAATAA
AAGGCG-ATATAATATTGTCAATTAATGCTCTCTATATCTTCCATTTTGGTTGTGTATACTATAATTTTCAGTATTGGCA
CATG----------------------------------------------------------------------------
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----GTACAATATATGCTAGTATAACAAAGATTCATGTGGCAAATGATTTCCAAATAAAGATTATTGTCACACAATACTT
ATGAATCTTTTTCATAGAAACACTTAGTAATGTAGACC-AAAAACATGACATTAATGCGCATATAATACTTACAA-ATGC
ACGCTTTAAGTACATATAAATATATTGGCTATTTATAAAAAATTAATATACATATAAATATATTGGCTATTCATATG---
---------------TCATACTACTATAGTGATATCACATATGAATATTAAGTACAAAATATATAATCATTGAATATTTA
TCATTAAAAATACCACCTTTAGATGTCTCTGTGACGCGCATAATCTCCATCTTCTTCTTTTTTTCCTTAGATTAA-AAAA
GGGTGAGGCCTGCACGGTTGCACAACTGTATAGTGCAAGATACAAATATAGTTGTTTTCAAAATAAAAATAAAATAAAAT
ATACTACTAACAGTGAGTACAAACAGGT-T-TGGTGACCCGCAAAAAAAGAAAAGGTTTTGGTCAACCACCC--------
------------CCGACGTCGGCACACGCACTATCCATCGGTTGCCTCGTATACCCTCTTCCCGGGCCCAGAGCCGCCTT
CGCTTCAGACCCGGTAACCCAGAAACGACCCGCTTATATACTCCAGCGTTCGTTGACACGGCGACGACGAAGTTAAACAA
CTCCCT----CCTCCCTCGCCCCCGCACACAGACCACCGACGGCAACCACCTCCAGCGTTAATGCTCCACCGACGCCGCT
AATGGCCGCCGCCGTCGCCGCAGTGACCTCGCCGGATCTCTTCTCGTTCCACGCGTCCATCGCGCCCTTGCCGGCACCTC
CGGTGGGCGCTGAA------GACGACGACGGCGACTTCGAGTTCCGCATCCCGGCGGCGGTGGCCGCGCTCTCCGCCGCT
GACGAGCTCTTCTCGGACGGAAAGCTCGTGCCTCTCCTCCCGCTGCTGAATCCCGCCTCGACCTGCTCGGCTCCGCCGTG
CCCGGAGGAGGAGCCTCCCTCGGAGCCCGCCTCTCCCCGCGCGCCGCGGTGTGCTGGGCGGCGGTGGCGTGATCTCCTCC
TCCTCGTTACAAAGAAGCCCAAAGCCGGCGAGACCAAGGGTCGCACGGAAGCGTCCGTGGGGCGTCGGGAGGCGCATTCG
CGGCCGCTCCTCTCGCGCGACTCCTCCTCGTCCTCGTCGGCCTCCTCGTCCGACTCCGGCAGGAACGCGCGCCGCCCGCC
GCCGCCGTCGCGCCCACCCCTGCGGACGCGCTCCGCGCCGGTGGCGAGCCTCCTCCACCTCATGTCCAAGAAGAACGCCG
GCGGCTGCAGGAACGGCGCCGCCGCGGCCGCGGCCCCGAAACAGCGCCAGCAGCAGCAGGCGTGCGCGCACCCGCTCCTG
ACCCGGGCCTCCTCGTCGTCCTCGGCCTCCTCCTCGGACTCCGGCAGGAACTCCCGTCCGCCGTGGCATCCGCGCGGCCC
CGCGCGGCCATGGCGCCCCGCGATAGCCGCCGAGAGCCCGCGCGTCAGCGCGTCCGGGCGCGTGGTGTTCCGGGGCCTGG
AGCGGTGCTCGAGCACGCCCGCCGCGGGGGGCGTCGGCGGCCTGCGGCGGCCGCGGCCGAGGGGCATGGAGCGCTCGTAC
TCGACCAATGTGCGCGTGGATCCGGTGATCAACGTGTTCGGCTTCGGGCACCTGTTCTTCCCAGCTTCGCCGTCCAAGGA
GAAGAAGGCCGACGCCGCGGGCGGCGGCCGGAGGAACAGGCCGGAGAAGCTGGCGATGATGCTGAGAGATCCGCAGGATT
AGGTGGTGGCCATGCTGGAA-ATAACGCATGAGATTCTTCCTGTCGCGGATTCTTCTCTGTATTTCTCATCTTGTTTTTT
CAGTTTTTTGTAATATATACTGCTGCTGCTCCTGTTGTTTAGAACTAGATCTCTCAAATTTCAGAGACCTCATGCGAATC
TGAACCTACTCTGAACTTGTCTTCAGAGTGTCGATGTAT-------AAAATTTCTCATGAACAGAAGAACACTTTGGTTC
CAAAACCCAGCTAGTTTTGCTTCAAGCT--------------------------------------GAAGATCACTGTGA
AACCGGATGAGGATGCAGCGTAC-TTTTTAAATTTGGAAATAAGGATGTGGCGTCAAATAGCAACAGTTGGAGCAACGGG
ACATCAAAGTTTTGAAATTTATCTGGCTGTCCCCGACAGTACAATAGA----ATAGGGTGCAGTGACTGCCCTGCCGCTG
---------------GTGGCAGGAAAGGAGAACTGGGTCCGTGATCTGTGCTCTGCTGCCCCCACCC------TCCCGCC
TGTGGTGCTACAATTCAAAAGCCTCTTAAATTTGTTGTATGTGTACACTACTCGTAGAGTACACATGTGTGGAACTGACA
AGCCTGCATTTTGGAGTTTTAAAGAAATAT--------------------------------------------------
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-----------------------------------------------------------------------------ATG
GATGGCAATATGGCATAGTGCTGATTTGATTTGAAACCATTTTGACTTATTTTACTCA------TATCACACATGGGGAT
CTCCGGGGACGTGATGGTTTAGAGGCACC---------------------------------------------------
----------------
>chr2B_10
---------AACTAGATTTC-AAAATTTAACTCGGCCGAGATACAGATTTAGTGGGCCAAGGCCCATAAAATATAACATA
TGAGTAGTTCATTTTCTAT---AATCCAATGGCAATATTACCATTACATATTGGGAGATAAGATGATGTCTATGATGTTG
TAGGAGTAATATGGACATTTTCATTTTTTAAGATAAGAAAACAAATTTTATCGCTAGTACAACAAAACAACACGAAATAA
GAAAAAAATATAATGCTGCCAATTAATGTTATCTATATCCTCCATTTTGGTTGCGTATAATACAATTTTTAGTATTGGCA
CATACTCCCTCTGTTTATAAATATTTGTCTTTCTAGACATTTCAAATGAACCACCACATACGGATGTATGTAGACATATT
TTAGAGTGTAGATTCACTCATTTTGCTTCGTATGTAGTCATTTGTTGAAATCTCTAGAAAGACAAATATTTAGGAACGGA
GGGAGTACAATATATGCTAGTATAACAAAGATTTATGCCGTAAATGATTTCCAAATAAATAATATTGCCGCAGAATACTT
ATGAAT-TTTTTCATAGAAACACTTAGTAATGTAGACAGAAAAACATGACATTAATGCACATATAATACTTAAGATATGC
ACGCTTTAAGTACATA--AATATATTGGCTATTTATTAAAGATTAATATACATACTACTACTATATTCTTATAAGATATC
ACATAT--------------------------------ATATGAAGATTAAGTGCAAAATATATAATCATTGAATATTTA
TCATTAAAAATATCACCTTTAGATGTCTCTATGACGCACACAATTTTCATCATCTTTTTTTTAAAA--------------
-GGCGAGGCCTGCGCGGTTGCACAACCGTATAGTGCAAGATGTAACTATAGTTGTTTTCAAAATAAAATTAAAATAAAAT
A------TAACAATGAGTACAAACAGGT-TATGGTGACCCGCAAAAAAAGAAAAGGTTTTGGTCAACCACTCCCATATCG
CCAAGACATCAGCCGACGTCGGCACACGCACTATGCATCGGTTGCCTCGTATACCCTCTTCCCGGGCCCAGAGCCGCCTT
CGTTTCAGACCCGGTAACCCAGAAACGACCCGCTTATATACGAG-GCGTTCGTTGACACGGCGACGACGAAGTTAAACAA
CTCCCTC---CCTCACTCGCCCCCGCACACAGACCACTGACGGCAACCACCTCCAGCGTTAATGCTCCACCGACGCCGCT
AATGGCCGCCGCCGTCGCCGCAGTTACCTCGCCGGATCTCTTCTCGTTCCACGCGTCCATCCCGCCCTTGCCGGCACATC
CGGTGGATGCGGAAGACGGCGACGGCGACGGCGACTTCGAGTTCCGCATCCCCGCGGCGGTTGCCGCGCTCTCCGCCGCT
GATGAGCTCTTCTCGGACGGAAAGCTCGTGCCTCTCCTCCCGCTGCTGAATCCCGCCTCAACCTGCTCGGCTCCGCCGTG
CCCGGAGGAGGAGCCTCCGTCGGAGCCCGTCTCTCCCCGCGCGCCGCGGTGCGCTGGGCGGCGGTGGCGCGATCTCCTCC
TCCTCGTCACAAAGAAGCCCAAGGCCAGCGAGACCAAGGGTCGCACGGAAGCGTCTCTGGGGCGTCGGGAGGCGCATTCG
CGGCCGCTCCTCTCGCGCGACTCCTCCTCGTCCTCGTCGGCCTCCTCGTCCGACTCCGGCAGGAACGCGCGCCGCCCGCC
GCCGCCGTCGCGCCCACCCCTGCGGACGCGCTCCGCGCCGGTGGCGAGCCTCCTCCACCTCATGTCCAAGAAGAACGCCG
GCGACTGCAGGAACGGCGCCGCCGCAGCCGCTGCCCCGAAGCAGCGCCAGCAGCAGCAGGCGTGCGCGCACCCGCTCCTG
ACCCGGGCCTCCTCGTCGTCCTCAGCCTCCTCCTCGGACTCCGGCAGGAACTCCCGCCCGCCGTGGCATCCGCGTGGCCC
CGCGCGGCCATGGCGCCCCGCGATAGCCGCCGAGAGCCCGCGTGTCAGCGCGTCCGGGCGCGTGGTGTTCCGGGGCCTGG
AGCGGTGCTCGAGCACGCCCGCCGCGGCGGGCATCGGCGGCCTGCGGCGGCCGCGGCCGAGGGGCATGGAGAGGTCGTAC
TCGACCAATGTGCGCGTGGATCCGGTGATCAACGTGTTCGGGTTCGGGCACCTGTTTTTCCCAGCTTCGCCGTCCAAGGA
GAAGAAGGCCGACACCGCGGGCGGCGGCCGGAGGAACAGGCCGGAGAAGCTGGCCATGATGCTGAGAGATCCGCAGGATT
AGGTGGTGGCCATGCTGGAACATAACGCATGAGATTCTTCCTGTCGCGGATTCTTCTCTGTATTTCTCATCTTGTTTTTT
CAGTTTTTTGTAATATATACT---GCTGCTCCTGTTGTTTAGAACTAGATCTCTCAAATTTCAGAGACCTCATGCGAATC
TGAAC------------TGCCATCAGAGTGTCGTATCGATGTAAAAAAAATTACTCATGAACAGATT-------------
-----------------------------------ACTGTGAACTTTTCAAAGAAA--------AAGAAGATCACTGTGA
AATCGGATGAGGATGAGGAGTACATTTTTAAATTTGGAAATGAGGATGGGGCGTCAAATCGCAACAGTTGGAGCAACGGG
ACATCAAAGTTTTGAAATTTATCTGGCTGTCCCCGACAGTGCAATAGA----ATAGGGTGCAGTGACTGCCCTGCCGCTG
CGGCCGCCTGCCGCTGTGGCAGGAAAGGAGAACTGGGTCCGTGATCTGTGCTCTGCTGCCCCCACCC------TCCCACC
TGTGGTGCTACAATTCAAAAGCCTCTTAAATTTGTTGTATGTGTACACTACTTGTAGAGTACACATGTGTGCGACTGACA
GGCCTGCATTTGGAGTTTTTAAAAGCAATATATAT---------------------------------------------
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>SNPs
--------S-----------------------------------------------------S------SS---------
---------------------------------------------------------------S----------------
-------------S------S--S---------------------------S--------------------S-S-----
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------------------------------------------------------------S-------------------
--------------------------------------------------------S-----------------------
------------------------------------------------------------------------------S-
------SSSSSSSSS-------------S----------------------S--------------S-------------
----------------------------------S------------------------S--S-SS--SS-SS--S--S-
---------------------------S---S-------S----------------------------------------
------------------------S---S-------------S-------------------------------------
--------------------------------S-----------------------------------------------
----S----------------S---------------------SS-----------------------------------
-------SSS------S----------S--------------------------S----------------------S--
---------------------------------------------------------------------------S----
---S------------------------S---------------------------------------------------
-----------------S--S--------S-----------S------------------S-------------------
-SS-----------------------------------------------------------------------------
-------S------------------------S-----------S-----------------------------------
-----------------------------S-----S-------------S------------------------------
---------S-----S----------------------------------------------------------------
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--------------------------------------------------------------------S----S------
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-----------------------------------------------------S--------------------------
------------------------------------------------------------------------S-------
-----------------------------------S--------------------------------------------
------------------------------------------------------------------S-------------
-----------------S--S-----S-----------S------S----------------------------------
----------------------------------S----------S--S-------------------------------
----------------------------SSSSSSS-----------------S---SSSSSSSS----------------
---------------S-------------------------SS-------------------------------------
------------------------------------------------SSSS----------------------------
-------------------------------------------------------------------SSSSSS-------
-----S-----------------------------------------------------S-------------------S
-----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
-----------S----S-----------------------------S----S-----SSSSSSS--S-------------
---S------------------S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS
>forward_1142
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--TTCCAGACCCGGTAACCCAT----------------------------------------------------------
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>reverse_3148
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---------------------------TGGCACATCTAGACGTGGTT---------------------------------
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