Multiple sequence alignment - TraesCS2A01G441300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G441300 | chr2A | 100.000 | 3920 | 0 | 0 | 1 | 3920 | 691235027 | 691238946 | 0.000000e+00 | 7239.0 |
1 | TraesCS2A01G441300 | chr2A | 92.121 | 165 | 11 | 2 | 3124 | 3286 | 35896207 | 35896371 | 8.470000e-57 | 231.0 |
2 | TraesCS2A01G441300 | chr2A | 77.953 | 127 | 24 | 4 | 235 | 358 | 587166339 | 587166464 | 4.200000e-10 | 76.8 |
3 | TraesCS2A01G441300 | chr2D | 83.675 | 2977 | 281 | 97 | 237 | 3124 | 547613375 | 547610515 | 0.000000e+00 | 2615.0 |
4 | TraesCS2A01G441300 | chr2B | 83.798 | 2222 | 172 | 74 | 1 | 2163 | 653917478 | 653915386 | 0.000000e+00 | 1936.0 |
5 | TraesCS2A01G441300 | chr2B | 92.474 | 970 | 54 | 6 | 2161 | 3124 | 653915258 | 653914302 | 0.000000e+00 | 1369.0 |
6 | TraesCS2A01G441300 | chr6A | 96.535 | 635 | 22 | 0 | 3286 | 3920 | 593296669 | 593296035 | 0.000000e+00 | 1051.0 |
7 | TraesCS2A01G441300 | chr6A | 83.758 | 745 | 54 | 31 | 942 | 1673 | 54666097 | 54666787 | 0.000000e+00 | 643.0 |
8 | TraesCS2A01G441300 | chr6A | 93.865 | 163 | 9 | 1 | 3125 | 3286 | 98465611 | 98465449 | 1.090000e-60 | 244.0 |
9 | TraesCS2A01G441300 | chr3D | 96.123 | 619 | 18 | 5 | 3303 | 3920 | 105111763 | 105112376 | 0.000000e+00 | 1005.0 |
10 | TraesCS2A01G441300 | chr4A | 94.219 | 640 | 29 | 7 | 3286 | 3920 | 468605903 | 468606539 | 0.000000e+00 | 970.0 |
11 | TraesCS2A01G441300 | chr4A | 75.484 | 155 | 26 | 5 | 178 | 321 | 711243154 | 711243307 | 9.090000e-07 | 65.8 |
12 | TraesCS2A01G441300 | chr5A | 93.157 | 643 | 34 | 5 | 3286 | 3920 | 548678439 | 548677799 | 0.000000e+00 | 935.0 |
13 | TraesCS2A01G441300 | chr5A | 93.413 | 167 | 9 | 2 | 3121 | 3286 | 522127775 | 522127610 | 3.030000e-61 | 246.0 |
14 | TraesCS2A01G441300 | chr3B | 93.355 | 617 | 33 | 7 | 3306 | 3920 | 817282535 | 817281925 | 0.000000e+00 | 905.0 |
15 | TraesCS2A01G441300 | chr6B | 89.050 | 621 | 57 | 8 | 3303 | 3920 | 648180808 | 648181420 | 0.000000e+00 | 760.0 |
16 | TraesCS2A01G441300 | chr7B | 88.960 | 625 | 51 | 14 | 3303 | 3920 | 697051587 | 697052200 | 0.000000e+00 | 756.0 |
17 | TraesCS2A01G441300 | chr1B | 88.907 | 622 | 58 | 10 | 3303 | 3920 | 653263106 | 653262492 | 0.000000e+00 | 756.0 |
18 | TraesCS2A01G441300 | chr1B | 88.585 | 622 | 60 | 9 | 3303 | 3920 | 473059574 | 473060188 | 0.000000e+00 | 745.0 |
19 | TraesCS2A01G441300 | chr1D | 90.214 | 327 | 15 | 9 | 1336 | 1654 | 480516453 | 480516770 | 1.010000e-110 | 411.0 |
20 | TraesCS2A01G441300 | chr1D | 86.713 | 143 | 8 | 4 | 1145 | 1287 | 480516213 | 480516344 | 8.780000e-32 | 148.0 |
21 | TraesCS2A01G441300 | chr4B | 95.092 | 163 | 6 | 2 | 3125 | 3286 | 53569718 | 53569557 | 5.030000e-64 | 255.0 |
22 | TraesCS2A01G441300 | chr1A | 95.092 | 163 | 6 | 2 | 3125 | 3286 | 500064854 | 500065015 | 5.030000e-64 | 255.0 |
23 | TraesCS2A01G441300 | chr7A | 94.512 | 164 | 8 | 1 | 3124 | 3286 | 20510160 | 20509997 | 6.500000e-63 | 252.0 |
24 | TraesCS2A01G441300 | chr7D | 94.479 | 163 | 8 | 1 | 3125 | 3286 | 36122740 | 36122902 | 2.340000e-62 | 250.0 |
25 | TraesCS2A01G441300 | chr5B | 94.479 | 163 | 8 | 1 | 3125 | 3286 | 662567198 | 662567036 | 2.340000e-62 | 250.0 |
26 | TraesCS2A01G441300 | chr3A | 92.771 | 166 | 11 | 1 | 3121 | 3285 | 582316639 | 582316474 | 5.060000e-59 | 239.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G441300 | chr2A | 691235027 | 691238946 | 3919 | False | 7239.0 | 7239 | 100.0000 | 1 | 3920 | 1 | chr2A.!!$F3 | 3919 |
1 | TraesCS2A01G441300 | chr2D | 547610515 | 547613375 | 2860 | True | 2615.0 | 2615 | 83.6750 | 237 | 3124 | 1 | chr2D.!!$R1 | 2887 |
2 | TraesCS2A01G441300 | chr2B | 653914302 | 653917478 | 3176 | True | 1652.5 | 1936 | 88.1360 | 1 | 3124 | 2 | chr2B.!!$R1 | 3123 |
3 | TraesCS2A01G441300 | chr6A | 593296035 | 593296669 | 634 | True | 1051.0 | 1051 | 96.5350 | 3286 | 3920 | 1 | chr6A.!!$R2 | 634 |
4 | TraesCS2A01G441300 | chr6A | 54666097 | 54666787 | 690 | False | 643.0 | 643 | 83.7580 | 942 | 1673 | 1 | chr6A.!!$F1 | 731 |
5 | TraesCS2A01G441300 | chr3D | 105111763 | 105112376 | 613 | False | 1005.0 | 1005 | 96.1230 | 3303 | 3920 | 1 | chr3D.!!$F1 | 617 |
6 | TraesCS2A01G441300 | chr4A | 468605903 | 468606539 | 636 | False | 970.0 | 970 | 94.2190 | 3286 | 3920 | 1 | chr4A.!!$F1 | 634 |
7 | TraesCS2A01G441300 | chr5A | 548677799 | 548678439 | 640 | True | 935.0 | 935 | 93.1570 | 3286 | 3920 | 1 | chr5A.!!$R2 | 634 |
8 | TraesCS2A01G441300 | chr3B | 817281925 | 817282535 | 610 | True | 905.0 | 905 | 93.3550 | 3306 | 3920 | 1 | chr3B.!!$R1 | 614 |
9 | TraesCS2A01G441300 | chr6B | 648180808 | 648181420 | 612 | False | 760.0 | 760 | 89.0500 | 3303 | 3920 | 1 | chr6B.!!$F1 | 617 |
10 | TraesCS2A01G441300 | chr7B | 697051587 | 697052200 | 613 | False | 756.0 | 756 | 88.9600 | 3303 | 3920 | 1 | chr7B.!!$F1 | 617 |
11 | TraesCS2A01G441300 | chr1B | 653262492 | 653263106 | 614 | True | 756.0 | 756 | 88.9070 | 3303 | 3920 | 1 | chr1B.!!$R1 | 617 |
12 | TraesCS2A01G441300 | chr1B | 473059574 | 473060188 | 614 | False | 745.0 | 745 | 88.5850 | 3303 | 3920 | 1 | chr1B.!!$F1 | 617 |
13 | TraesCS2A01G441300 | chr1D | 480516213 | 480516770 | 557 | False | 279.5 | 411 | 88.4635 | 1145 | 1654 | 2 | chr1D.!!$F1 | 509 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
973 | 1021 | 0.098376 | CCTTGCTTGATCTTGCGAGC | 59.902 | 55.0 | 17.00 | 0.0 | 44.02 | 5.03 | F |
1716 | 1844 | 0.604578 | TCCAAGCTTGCCATCTTTGC | 59.395 | 50.0 | 21.43 | 0.0 | 0.00 | 3.68 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2656 | 2974 | 0.247736 | AAGTCCGTCAGCTGTGATCC | 59.752 | 55.0 | 14.67 | 0.49 | 34.36 | 3.36 | R |
3658 | 4004 | 0.035439 | AGAACATAGTTGGTGCGGGG | 60.035 | 55.0 | 0.00 | 0.00 | 0.00 | 5.73 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
28 | 29 | 4.078516 | GGCACCGCGACCTAGGTT | 62.079 | 66.667 | 17.53 | 0.00 | 39.00 | 3.50 |
29 | 30 | 2.047560 | GCACCGCGACCTAGGTTT | 60.048 | 61.111 | 17.53 | 0.00 | 39.00 | 3.27 |
36 | 37 | 0.451783 | GCGACCTAGGTTTGCATTGG | 59.548 | 55.000 | 26.52 | 3.58 | 32.52 | 3.16 |
37 | 38 | 1.821216 | CGACCTAGGTTTGCATTGGT | 58.179 | 50.000 | 17.53 | 0.00 | 37.24 | 3.67 |
42 | 43 | 1.302383 | TAGGTTTGCATTGGTCGCGG | 61.302 | 55.000 | 6.13 | 0.00 | 0.00 | 6.46 |
66 | 67 | 2.523168 | TCCACACGGCACAGGAGA | 60.523 | 61.111 | 0.00 | 0.00 | 0.00 | 3.71 |
68 | 69 | 1.227823 | CCACACGGCACAGGAGAAA | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 2.52 |
69 | 70 | 1.230635 | CCACACGGCACAGGAGAAAG | 61.231 | 60.000 | 0.00 | 0.00 | 0.00 | 2.62 |
70 | 71 | 1.598130 | ACACGGCACAGGAGAAAGC | 60.598 | 57.895 | 0.00 | 0.00 | 0.00 | 3.51 |
71 | 72 | 2.357517 | ACGGCACAGGAGAAAGCG | 60.358 | 61.111 | 0.00 | 0.00 | 0.00 | 4.68 |
72 | 73 | 3.121030 | CGGCACAGGAGAAAGCGG | 61.121 | 66.667 | 0.00 | 0.00 | 0.00 | 5.52 |
94 | 95 | 2.373707 | GGCTCCTCCATGAGTGCCT | 61.374 | 63.158 | 14.23 | 0.00 | 41.05 | 4.75 |
99 | 100 | 4.100084 | TCCATGAGTGCCTGGCGG | 62.100 | 66.667 | 14.98 | 7.96 | 32.30 | 6.13 |
146 | 147 | 2.587889 | CCCTACGGCCGTTGGAAT | 59.412 | 61.111 | 46.24 | 22.97 | 42.22 | 3.01 |
149 | 150 | 0.179056 | CCTACGGCCGTTGGAATGAT | 60.179 | 55.000 | 43.69 | 17.99 | 42.22 | 2.45 |
155 | 156 | 0.373716 | GCCGTTGGAATGATGACGAC | 59.626 | 55.000 | 0.00 | 0.00 | 37.69 | 4.34 |
160 | 161 | 2.223537 | TGGAATGATGACGACGATGG | 57.776 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
163 | 164 | 2.138320 | GAATGATGACGACGATGGCAT | 58.862 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
164 | 165 | 3.317150 | GAATGATGACGACGATGGCATA | 58.683 | 45.455 | 0.00 | 0.00 | 0.00 | 3.14 |
165 | 166 | 2.422276 | TGATGACGACGATGGCATAG | 57.578 | 50.000 | 0.00 | 2.16 | 0.00 | 2.23 |
166 | 167 | 1.953686 | TGATGACGACGATGGCATAGA | 59.046 | 47.619 | 14.76 | 0.00 | 0.00 | 1.98 |
167 | 168 | 2.287608 | TGATGACGACGATGGCATAGAC | 60.288 | 50.000 | 14.76 | 7.28 | 0.00 | 2.59 |
169 | 170 | 0.660595 | GACGACGATGGCATAGACGG | 60.661 | 60.000 | 27.86 | 15.04 | 0.00 | 4.79 |
170 | 171 | 2.016704 | CGACGATGGCATAGACGGC | 61.017 | 63.158 | 20.37 | 12.64 | 0.00 | 5.68 |
171 | 172 | 2.016704 | GACGATGGCATAGACGGCG | 61.017 | 63.158 | 14.76 | 4.80 | 0.00 | 6.46 |
172 | 173 | 2.335011 | CGATGGCATAGACGGCGA | 59.665 | 61.111 | 16.62 | 0.00 | 0.00 | 5.54 |
173 | 174 | 1.299850 | CGATGGCATAGACGGCGAA | 60.300 | 57.895 | 16.62 | 0.00 | 0.00 | 4.70 |
174 | 175 | 1.278172 | CGATGGCATAGACGGCGAAG | 61.278 | 60.000 | 16.62 | 0.00 | 0.00 | 3.79 |
175 | 176 | 0.946221 | GATGGCATAGACGGCGAAGG | 60.946 | 60.000 | 16.62 | 0.87 | 0.00 | 3.46 |
206 | 207 | 1.808390 | CCAAGGCGGCTACGTGTAC | 60.808 | 63.158 | 13.71 | 0.00 | 43.45 | 2.90 |
207 | 208 | 2.156446 | CAAGGCGGCTACGTGTACG | 61.156 | 63.158 | 13.71 | 2.43 | 43.45 | 3.67 |
227 | 228 | 1.513586 | GGTCGTCGTCCGCTACAAG | 60.514 | 63.158 | 0.00 | 0.00 | 36.19 | 3.16 |
232 | 233 | 1.135859 | CGTCGTCCGCTACAAGTTAGT | 60.136 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
235 | 236 | 2.417933 | TCGTCCGCTACAAGTTAGTCTC | 59.582 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
242 | 243 | 6.208204 | TCCGCTACAAGTTAGTCTCTTTTAGT | 59.792 | 38.462 | 0.00 | 0.00 | 31.67 | 2.24 |
258 | 259 | 7.497909 | TCTCTTTTAGTTTTCAGTTGATCGGTT | 59.502 | 33.333 | 0.00 | 0.00 | 0.00 | 4.44 |
266 | 267 | 8.023128 | AGTTTTCAGTTGATCGGTTGAAATATG | 58.977 | 33.333 | 14.91 | 0.00 | 38.77 | 1.78 |
267 | 268 | 6.435430 | TTCAGTTGATCGGTTGAAATATGG | 57.565 | 37.500 | 3.87 | 0.00 | 0.00 | 2.74 |
271 | 272 | 4.495690 | TGATCGGTTGAAATATGGTCCA | 57.504 | 40.909 | 0.00 | 0.00 | 0.00 | 4.02 |
325 | 326 | 7.963981 | TGAAATCTGTCGTGTTTGATAAGATC | 58.036 | 34.615 | 0.00 | 0.00 | 0.00 | 2.75 |
334 | 335 | 5.051441 | CGTGTTTGATAAGATCTGTCCGATG | 60.051 | 44.000 | 0.00 | 0.00 | 30.84 | 3.84 |
336 | 337 | 6.978659 | GTGTTTGATAAGATCTGTCCGATGTA | 59.021 | 38.462 | 0.00 | 0.00 | 30.84 | 2.29 |
385 | 386 | 4.966965 | ATATGGTTAGATAGTCGGCTCG | 57.033 | 45.455 | 0.00 | 0.00 | 0.00 | 5.03 |
386 | 387 | 2.336945 | TGGTTAGATAGTCGGCTCGA | 57.663 | 50.000 | 0.00 | 0.00 | 0.00 | 4.04 |
398 | 399 | 0.798776 | CGGCTCGAGCATCACTTTTT | 59.201 | 50.000 | 36.27 | 0.00 | 44.36 | 1.94 |
399 | 400 | 1.201965 | CGGCTCGAGCATCACTTTTTC | 60.202 | 52.381 | 36.27 | 15.34 | 44.36 | 2.29 |
402 | 403 | 1.394917 | CTCGAGCATCACTTTTTCCGG | 59.605 | 52.381 | 0.00 | 0.00 | 33.17 | 5.14 |
408 | 409 | 2.749621 | GCATCACTTTTTCCGGACTGAT | 59.250 | 45.455 | 1.83 | 2.74 | 0.00 | 2.90 |
423 | 424 | 2.582498 | GATTCTCACCGGTCCGCG | 60.582 | 66.667 | 2.59 | 0.00 | 0.00 | 6.46 |
457 | 458 | 2.036089 | GTCCTATCCAGGGATCAACGTC | 59.964 | 54.545 | 3.62 | 0.00 | 42.87 | 4.34 |
483 | 484 | 1.742880 | CCATGAGTGGTGAGCGGTG | 60.743 | 63.158 | 0.00 | 0.00 | 40.83 | 4.94 |
486 | 487 | 1.471829 | ATGAGTGGTGAGCGGTGACA | 61.472 | 55.000 | 6.53 | 0.00 | 0.00 | 3.58 |
507 | 516 | 2.304180 | AGATGCTATGGGATGTGCTACC | 59.696 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
508 | 517 | 1.806496 | TGCTATGGGATGTGCTACCT | 58.194 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
509 | 518 | 2.970987 | TGCTATGGGATGTGCTACCTA | 58.029 | 47.619 | 0.00 | 0.00 | 0.00 | 3.08 |
510 | 519 | 2.632996 | TGCTATGGGATGTGCTACCTAC | 59.367 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
511 | 520 | 2.352814 | GCTATGGGATGTGCTACCTACG | 60.353 | 54.545 | 0.00 | 0.00 | 0.00 | 3.51 |
512 | 521 | 2.082140 | ATGGGATGTGCTACCTACGA | 57.918 | 50.000 | 0.00 | 0.00 | 0.00 | 3.43 |
513 | 522 | 1.108776 | TGGGATGTGCTACCTACGAC | 58.891 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
549 | 558 | 0.110509 | AGCGTCACACACTACGTACG | 60.111 | 55.000 | 15.01 | 15.01 | 41.10 | 3.67 |
570 | 579 | 2.049433 | GACGTACGCAGCCACAGT | 60.049 | 61.111 | 16.72 | 0.00 | 0.00 | 3.55 |
571 | 580 | 1.663702 | GACGTACGCAGCCACAGTT | 60.664 | 57.895 | 16.72 | 0.00 | 0.00 | 3.16 |
572 | 581 | 1.886861 | GACGTACGCAGCCACAGTTG | 61.887 | 60.000 | 16.72 | 0.00 | 0.00 | 3.16 |
574 | 583 | 1.597027 | GTACGCAGCCACAGTTGGT | 60.597 | 57.895 | 0.00 | 0.00 | 45.98 | 3.67 |
575 | 584 | 1.147376 | TACGCAGCCACAGTTGGTT | 59.853 | 52.632 | 0.00 | 0.00 | 45.98 | 3.67 |
576 | 585 | 0.393448 | TACGCAGCCACAGTTGGTTA | 59.607 | 50.000 | 0.00 | 0.00 | 45.98 | 2.85 |
577 | 586 | 1.164041 | ACGCAGCCACAGTTGGTTAC | 61.164 | 55.000 | 0.00 | 0.00 | 45.98 | 2.50 |
766 | 799 | 2.026542 | ACAGACACATGACATGATGCCT | 60.027 | 45.455 | 22.19 | 10.87 | 0.00 | 4.75 |
767 | 800 | 3.014623 | CAGACACATGACATGATGCCTT | 58.985 | 45.455 | 22.19 | 0.00 | 0.00 | 4.35 |
768 | 801 | 3.014623 | AGACACATGACATGATGCCTTG | 58.985 | 45.455 | 22.19 | 10.69 | 0.00 | 3.61 |
769 | 802 | 1.475280 | ACACATGACATGATGCCTTGC | 59.525 | 47.619 | 22.19 | 0.00 | 0.00 | 4.01 |
770 | 803 | 1.474879 | CACATGACATGATGCCTTGCA | 59.525 | 47.619 | 22.19 | 0.00 | 44.86 | 4.08 |
771 | 804 | 1.475280 | ACATGACATGATGCCTTGCAC | 59.525 | 47.619 | 22.19 | 0.00 | 43.04 | 4.57 |
772 | 805 | 1.108776 | ATGACATGATGCCTTGCACC | 58.891 | 50.000 | 0.00 | 0.00 | 43.04 | 5.01 |
801 | 842 | 2.822399 | CCACCATCTCCGCTACCC | 59.178 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
840 | 881 | 0.315568 | CCGGATCGAACATCTCTCCC | 59.684 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
872 | 913 | 1.529152 | TTGTCCTCGCGTAGGCTTCA | 61.529 | 55.000 | 16.74 | 13.00 | 46.10 | 3.02 |
888 | 929 | 2.599848 | GCTTCACACTTGCACAACGTAG | 60.600 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
925 | 966 | 1.701847 | ACCACCTCAGTCAGCAAGATT | 59.298 | 47.619 | 0.00 | 0.00 | 0.00 | 2.40 |
939 | 980 | 3.558505 | GCAAGATTGCGTTATATGCTGG | 58.441 | 45.455 | 1.16 | 0.00 | 45.11 | 4.85 |
942 | 983 | 5.277779 | GCAAGATTGCGTTATATGCTGGTAA | 60.278 | 40.000 | 1.16 | 0.00 | 45.11 | 2.85 |
954 | 1002 | 0.176910 | GCTGGTAAGGAGGAGCTCAC | 59.823 | 60.000 | 17.19 | 8.81 | 31.08 | 3.51 |
970 | 1018 | 1.129998 | CTCACCTTGCTTGATCTTGCG | 59.870 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
973 | 1021 | 0.098376 | CCTTGCTTGATCTTGCGAGC | 59.902 | 55.000 | 17.00 | 0.00 | 44.02 | 5.03 |
984 | 1032 | 4.680237 | TGCGAGCACAGGGGAACG | 62.680 | 66.667 | 0.00 | 0.00 | 0.00 | 3.95 |
1056 | 1104 | 4.586235 | GGTGGTGCTGGTGCTGGT | 62.586 | 66.667 | 0.00 | 0.00 | 40.48 | 4.00 |
1057 | 1105 | 3.289834 | GTGGTGCTGGTGCTGGTG | 61.290 | 66.667 | 0.00 | 0.00 | 40.48 | 4.17 |
1061 | 1109 | 4.960866 | TGCTGGTGCTGGTGCTGG | 62.961 | 66.667 | 0.00 | 0.00 | 40.48 | 4.85 |
1068 | 1116 | 4.962836 | GCTGGTGCTGGTGCTGGT | 62.963 | 66.667 | 0.00 | 0.00 | 40.48 | 4.00 |
1222 | 1270 | 2.041928 | CTCCTCCTTCCCCCTGCT | 59.958 | 66.667 | 0.00 | 0.00 | 0.00 | 4.24 |
1223 | 1271 | 2.041265 | TCCTCCTTCCCCCTGCTC | 59.959 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
1224 | 1272 | 3.474570 | CCTCCTTCCCCCTGCTCG | 61.475 | 72.222 | 0.00 | 0.00 | 0.00 | 5.03 |
1225 | 1273 | 2.685380 | CTCCTTCCCCCTGCTCGT | 60.685 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
1226 | 1274 | 2.683933 | TCCTTCCCCCTGCTCGTC | 60.684 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
1227 | 1275 | 3.003173 | CCTTCCCCCTGCTCGTCA | 61.003 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
1228 | 1276 | 2.581354 | CTTCCCCCTGCTCGTCAG | 59.419 | 66.667 | 1.40 | 1.40 | 42.49 | 3.51 |
1291 | 1347 | 7.785033 | TGATTCATCAGCTCACTATCACTTTA | 58.215 | 34.615 | 0.00 | 0.00 | 32.11 | 1.85 |
1474 | 1592 | 3.974912 | TGCTCTTCGCTCATATCTCTTG | 58.025 | 45.455 | 0.00 | 0.00 | 40.11 | 3.02 |
1475 | 1593 | 3.382865 | TGCTCTTCGCTCATATCTCTTGT | 59.617 | 43.478 | 0.00 | 0.00 | 40.11 | 3.16 |
1476 | 1594 | 3.980775 | GCTCTTCGCTCATATCTCTTGTC | 59.019 | 47.826 | 0.00 | 0.00 | 35.14 | 3.18 |
1477 | 1595 | 4.261572 | GCTCTTCGCTCATATCTCTTGTCT | 60.262 | 45.833 | 0.00 | 0.00 | 35.14 | 3.41 |
1478 | 1596 | 5.735922 | GCTCTTCGCTCATATCTCTTGTCTT | 60.736 | 44.000 | 0.00 | 0.00 | 35.14 | 3.01 |
1508 | 1626 | 1.419381 | TTGCAGTCCAGTCCAGTGTA | 58.581 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1513 | 1631 | 3.154710 | CAGTCCAGTCCAGTGTAGTACA | 58.845 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1514 | 1632 | 3.191581 | CAGTCCAGTCCAGTGTAGTACAG | 59.808 | 52.174 | 2.39 | 0.00 | 0.00 | 2.74 |
1515 | 1633 | 3.155501 | GTCCAGTCCAGTGTAGTACAGT | 58.844 | 50.000 | 2.39 | 3.65 | 30.48 | 3.55 |
1516 | 1634 | 4.042560 | AGTCCAGTCCAGTGTAGTACAGTA | 59.957 | 45.833 | 10.32 | 0.00 | 29.11 | 2.74 |
1517 | 1635 | 4.155644 | GTCCAGTCCAGTGTAGTACAGTAC | 59.844 | 50.000 | 10.32 | 2.05 | 29.11 | 2.73 |
1518 | 1636 | 3.442977 | CCAGTCCAGTGTAGTACAGTACC | 59.557 | 52.174 | 10.32 | 2.25 | 29.11 | 3.34 |
1525 | 1644 | 3.750130 | AGTGTAGTACAGTACCACTCACG | 59.250 | 47.826 | 8.95 | 0.00 | 32.69 | 4.35 |
1539 | 1658 | 1.459592 | ACTCACGAATTAACACAGCGC | 59.540 | 47.619 | 0.00 | 0.00 | 0.00 | 5.92 |
1605 | 1727 | 3.425162 | AGAAATCCACAGACCTGGAAC | 57.575 | 47.619 | 0.00 | 0.00 | 43.79 | 3.62 |
1634 | 1762 | 7.482654 | CAACAATGGAGGTACACACATATAG | 57.517 | 40.000 | 0.00 | 0.00 | 0.00 | 1.31 |
1702 | 1830 | 3.751698 | CGTTTCCCCTTCTAAACTCCAAG | 59.248 | 47.826 | 0.00 | 0.00 | 34.21 | 3.61 |
1708 | 1836 | 2.489722 | CCTTCTAAACTCCAAGCTTGCC | 59.510 | 50.000 | 21.43 | 0.00 | 0.00 | 4.52 |
1716 | 1844 | 0.604578 | TCCAAGCTTGCCATCTTTGC | 59.395 | 50.000 | 21.43 | 0.00 | 0.00 | 3.68 |
1760 | 1888 | 1.064654 | GACATCAGCTTCCAAATCGGC | 59.935 | 52.381 | 0.00 | 0.00 | 33.14 | 5.54 |
1822 | 1959 | 3.012274 | AGACATTTCTCCTCTCCCTCTGA | 59.988 | 47.826 | 0.00 | 0.00 | 0.00 | 3.27 |
1825 | 1962 | 3.260269 | TTTCTCCTCTCCCTCTGAACA | 57.740 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
1832 | 1969 | 4.168871 | TCCTCTCCCTCTGAACATATCTGA | 59.831 | 45.833 | 0.00 | 0.00 | 35.08 | 3.27 |
1849 | 1986 | 7.831193 | ACATATCTGAGAGCAAAATACCTGTTT | 59.169 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
1872 | 2009 | 6.494666 | TTTTCTTTTGTCTACTGGGAGAGA | 57.505 | 37.500 | 0.00 | 0.00 | 0.00 | 3.10 |
1888 | 2025 | 9.978044 | ACTGGGAGAGATTAAAAATATACGTAC | 57.022 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
1902 | 2039 | 9.823098 | AAAATATACGTACTAGTCAATAGCGAG | 57.177 | 33.333 | 0.00 | 0.00 | 34.56 | 5.03 |
1912 | 2049 | 8.223177 | ACTAGTCAATAGCGAGTAACAGTATT | 57.777 | 34.615 | 0.00 | 0.00 | 34.56 | 1.89 |
1920 | 2091 | 6.830114 | AGCGAGTAACAGTATTTTATGAGC | 57.170 | 37.500 | 0.00 | 0.00 | 0.00 | 4.26 |
1924 | 2095 | 8.979574 | GCGAGTAACAGTATTTTATGAGCTTAT | 58.020 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
1942 | 2113 | 3.918220 | CTCGAAGATGCGCGCCAC | 61.918 | 66.667 | 30.77 | 21.88 | 33.89 | 5.01 |
1973 | 2152 | 8.445275 | TGCATTCTGTTTAGTCAACTAAAAGA | 57.555 | 30.769 | 15.06 | 15.41 | 46.35 | 2.52 |
1990 | 2169 | 4.484537 | AAAGACATCATGTGCTAGAGCT | 57.515 | 40.909 | 0.00 | 0.00 | 42.66 | 4.09 |
2014 | 2193 | 5.857471 | AACTTCTCAGAGATCATCAGGAG | 57.143 | 43.478 | 0.00 | 0.00 | 34.57 | 3.69 |
2018 | 2197 | 4.463070 | TCTCAGAGATCATCAGGAGTCTG | 58.537 | 47.826 | 0.00 | 0.00 | 39.93 | 3.51 |
2048 | 2227 | 4.581868 | AGCATTATTGTTTTTGCCTGCAT | 58.418 | 34.783 | 0.00 | 0.00 | 35.71 | 3.96 |
2049 | 2228 | 4.632688 | AGCATTATTGTTTTTGCCTGCATC | 59.367 | 37.500 | 0.00 | 0.00 | 35.71 | 3.91 |
2050 | 2229 | 4.392445 | GCATTATTGTTTTTGCCTGCATCA | 59.608 | 37.500 | 0.00 | 0.00 | 0.00 | 3.07 |
2089 | 2268 | 8.443937 | GTGAAAGTATGGATAGAACAAACTCAC | 58.556 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
2119 | 2298 | 7.844779 | AGAAATTGGGACCAGATAGTCTAGTAA | 59.155 | 37.037 | 0.00 | 0.00 | 36.95 | 2.24 |
2120 | 2299 | 7.604657 | AATTGGGACCAGATAGTCTAGTAAG | 57.395 | 40.000 | 0.00 | 0.00 | 36.95 | 2.34 |
2121 | 2300 | 5.728937 | TGGGACCAGATAGTCTAGTAAGT | 57.271 | 43.478 | 0.00 | 0.00 | 36.95 | 2.24 |
2122 | 2301 | 6.836714 | TGGGACCAGATAGTCTAGTAAGTA | 57.163 | 41.667 | 0.00 | 0.00 | 36.95 | 2.24 |
2153 | 2332 | 9.025041 | TGAAAAGTGAGATCTGATCAGTAGTTA | 57.975 | 33.333 | 21.92 | 2.94 | 30.14 | 2.24 |
2189 | 2498 | 4.378874 | GCAAGTACTAGCTTTTCTTGGCTG | 60.379 | 45.833 | 16.39 | 0.00 | 39.31 | 4.85 |
2254 | 2563 | 7.483580 | AGTTTCTTATACAGAGGCACTAAGT | 57.516 | 36.000 | 0.00 | 0.00 | 41.55 | 2.24 |
2265 | 2574 | 6.069963 | ACAGAGGCACTAAGTTGAAATCCTAT | 60.070 | 38.462 | 0.00 | 0.00 | 41.55 | 2.57 |
2314 | 2626 | 6.073765 | GCGTCTTCTATGTGTCTTTTTCTTCA | 60.074 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
2319 | 2631 | 7.496529 | TCTATGTGTCTTTTTCTTCAGTTGG | 57.503 | 36.000 | 0.00 | 0.00 | 0.00 | 3.77 |
2336 | 2648 | 7.337480 | TCAGTTGGGATTGTATGATGATTTG | 57.663 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2369 | 2681 | 9.993881 | CATTTCGAAAACATTTCTTATGTGAAC | 57.006 | 29.630 | 15.66 | 0.00 | 31.80 | 3.18 |
2430 | 2742 | 3.199880 | CAGGTCCAAAGAGAACTGTGT | 57.800 | 47.619 | 0.00 | 0.00 | 44.95 | 3.72 |
2487 | 2799 | 8.634444 | CACTGCTTATACTCCTAAACTCTGTAT | 58.366 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
2656 | 2974 | 2.158957 | TCTGCTGGCCTAGAAAATACCG | 60.159 | 50.000 | 3.32 | 0.00 | 0.00 | 4.02 |
2667 | 2985 | 3.535561 | AGAAAATACCGGATCACAGCTG | 58.464 | 45.455 | 13.48 | 13.48 | 0.00 | 4.24 |
2676 | 2994 | 1.338200 | GGATCACAGCTGACGGACTTT | 60.338 | 52.381 | 23.35 | 0.00 | 0.00 | 2.66 |
2682 | 3000 | 2.069273 | CAGCTGACGGACTTTAACCTG | 58.931 | 52.381 | 8.42 | 0.00 | 0.00 | 4.00 |
2731 | 3049 | 4.085357 | ACACAGGTGTATGAAGAAAGCA | 57.915 | 40.909 | 2.68 | 0.00 | 42.90 | 3.91 |
2841 | 3159 | 0.478072 | AGAGTGTCAAATGCACCCCA | 59.522 | 50.000 | 0.00 | 0.00 | 37.56 | 4.96 |
2942 | 3261 | 8.669243 | GTGAGTTAAATCTGAAGATTAACCAGG | 58.331 | 37.037 | 5.99 | 0.00 | 43.41 | 4.45 |
2958 | 3277 | 5.885449 | AACCAGGAGAGGAAATAGAGATG | 57.115 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
3018 | 3338 | 8.088365 | ACTGTTTGCTATTAGAATTTGTTTCCC | 58.912 | 33.333 | 0.00 | 0.00 | 34.67 | 3.97 |
3019 | 3339 | 7.382898 | TGTTTGCTATTAGAATTTGTTTCCCC | 58.617 | 34.615 | 0.00 | 0.00 | 34.67 | 4.81 |
3034 | 3354 | 2.662596 | CCCGTGGCAGTGCTTAGA | 59.337 | 61.111 | 16.11 | 0.00 | 0.00 | 2.10 |
3044 | 3364 | 3.009723 | GCAGTGCTTAGAATGCTTGGTA | 58.990 | 45.455 | 8.18 | 0.00 | 35.78 | 3.25 |
3066 | 3386 | 6.262273 | GGTAACAAGTTTGAATTCCTCTGTGA | 59.738 | 38.462 | 2.27 | 0.00 | 0.00 | 3.58 |
3111 | 3431 | 0.169672 | CATGAACGCTTGAAGCCTGG | 59.830 | 55.000 | 12.13 | 0.00 | 38.18 | 4.45 |
3124 | 3444 | 5.152623 | TGAAGCCTGGTAGTATATGCATC | 57.847 | 43.478 | 0.19 | 0.00 | 0.00 | 3.91 |
3125 | 3445 | 4.592778 | TGAAGCCTGGTAGTATATGCATCA | 59.407 | 41.667 | 0.19 | 0.00 | 0.00 | 3.07 |
3126 | 3446 | 4.815533 | AGCCTGGTAGTATATGCATCAG | 57.184 | 45.455 | 0.19 | 2.04 | 0.00 | 2.90 |
3127 | 3447 | 3.517100 | AGCCTGGTAGTATATGCATCAGG | 59.483 | 47.826 | 19.17 | 19.17 | 42.13 | 3.86 |
3128 | 3448 | 3.369892 | GCCTGGTAGTATATGCATCAGGG | 60.370 | 52.174 | 22.76 | 10.20 | 40.25 | 4.45 |
3129 | 3449 | 3.369892 | CCTGGTAGTATATGCATCAGGGC | 60.370 | 52.174 | 16.79 | 0.80 | 37.30 | 5.19 |
3130 | 3450 | 2.571653 | TGGTAGTATATGCATCAGGGCC | 59.428 | 50.000 | 0.19 | 0.00 | 0.00 | 5.80 |
3131 | 3451 | 2.418746 | GGTAGTATATGCATCAGGGCCG | 60.419 | 54.545 | 0.19 | 0.00 | 0.00 | 6.13 |
3132 | 3452 | 1.352083 | AGTATATGCATCAGGGCCGT | 58.648 | 50.000 | 0.19 | 0.00 | 0.00 | 5.68 |
3133 | 3453 | 1.699634 | AGTATATGCATCAGGGCCGTT | 59.300 | 47.619 | 0.19 | 0.00 | 0.00 | 4.44 |
3134 | 3454 | 2.076863 | GTATATGCATCAGGGCCGTTC | 58.923 | 52.381 | 0.19 | 0.00 | 0.00 | 3.95 |
3135 | 3455 | 0.250901 | ATATGCATCAGGGCCGTTCC | 60.251 | 55.000 | 0.19 | 0.00 | 0.00 | 3.62 |
3136 | 3456 | 1.344953 | TATGCATCAGGGCCGTTCCT | 61.345 | 55.000 | 0.19 | 0.00 | 37.71 | 3.36 |
3144 | 3464 | 2.640316 | AGGGCCGTTCCTGATATTTC | 57.360 | 50.000 | 0.00 | 0.00 | 35.47 | 2.17 |
3145 | 3465 | 1.202651 | AGGGCCGTTCCTGATATTTCG | 60.203 | 52.381 | 0.00 | 0.00 | 35.47 | 3.46 |
3146 | 3466 | 1.226746 | GGCCGTTCCTGATATTTCGG | 58.773 | 55.000 | 0.00 | 0.00 | 40.72 | 4.30 |
3148 | 3468 | 1.878953 | CCGTTCCTGATATTTCGGGG | 58.121 | 55.000 | 10.75 | 0.73 | 46.93 | 5.73 |
3149 | 3469 | 1.542547 | CCGTTCCTGATATTTCGGGGG | 60.543 | 57.143 | 10.75 | 1.52 | 46.93 | 5.40 |
3150 | 3470 | 1.605753 | GTTCCTGATATTTCGGGGGC | 58.394 | 55.000 | 10.75 | 1.58 | 46.93 | 5.80 |
3151 | 3471 | 0.476771 | TTCCTGATATTTCGGGGGCC | 59.523 | 55.000 | 10.75 | 0.00 | 46.93 | 5.80 |
3152 | 3472 | 1.074951 | CCTGATATTTCGGGGGCCC | 59.925 | 63.158 | 15.76 | 15.76 | 43.74 | 5.80 |
3153 | 3473 | 1.715019 | CCTGATATTTCGGGGGCCCA | 61.715 | 60.000 | 26.86 | 3.15 | 43.74 | 5.36 |
3154 | 3474 | 0.250901 | CTGATATTTCGGGGGCCCAG | 60.251 | 60.000 | 26.86 | 22.31 | 35.37 | 4.45 |
3155 | 3475 | 1.074951 | GATATTTCGGGGGCCCAGG | 59.925 | 63.158 | 26.86 | 16.13 | 35.37 | 4.45 |
3156 | 3476 | 2.426305 | GATATTTCGGGGGCCCAGGG | 62.426 | 65.000 | 26.86 | 13.27 | 35.37 | 4.45 |
3166 | 3486 | 4.329831 | GCCCAGGGCGAAATTACA | 57.670 | 55.556 | 17.05 | 0.00 | 39.62 | 2.41 |
3167 | 3487 | 2.573920 | GCCCAGGGCGAAATTACAA | 58.426 | 52.632 | 17.05 | 0.00 | 39.62 | 2.41 |
3168 | 3488 | 0.172578 | GCCCAGGGCGAAATTACAAC | 59.827 | 55.000 | 17.05 | 0.00 | 39.62 | 3.32 |
3169 | 3489 | 0.815095 | CCCAGGGCGAAATTACAACC | 59.185 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
3170 | 3490 | 0.815095 | CCAGGGCGAAATTACAACCC | 59.185 | 55.000 | 0.00 | 0.00 | 41.17 | 4.11 |
3171 | 3491 | 1.540267 | CAGGGCGAAATTACAACCCA | 58.460 | 50.000 | 8.10 | 0.00 | 43.47 | 4.51 |
3172 | 3492 | 1.472480 | CAGGGCGAAATTACAACCCAG | 59.528 | 52.381 | 8.10 | 0.00 | 43.47 | 4.45 |
3173 | 3493 | 0.815095 | GGGCGAAATTACAACCCAGG | 59.185 | 55.000 | 0.00 | 0.00 | 40.52 | 4.45 |
3174 | 3494 | 0.815095 | GGCGAAATTACAACCCAGGG | 59.185 | 55.000 | 2.85 | 2.85 | 0.00 | 4.45 |
3175 | 3495 | 0.172578 | GCGAAATTACAACCCAGGGC | 59.827 | 55.000 | 4.91 | 0.00 | 0.00 | 5.19 |
3176 | 3496 | 0.815095 | CGAAATTACAACCCAGGGCC | 59.185 | 55.000 | 4.91 | 0.00 | 0.00 | 5.80 |
3177 | 3497 | 1.191535 | GAAATTACAACCCAGGGCCC | 58.808 | 55.000 | 16.46 | 16.46 | 0.00 | 5.80 |
3178 | 3498 | 0.252513 | AAATTACAACCCAGGGCCCC | 60.253 | 55.000 | 21.43 | 0.00 | 0.00 | 5.80 |
3179 | 3499 | 1.153041 | AATTACAACCCAGGGCCCCT | 61.153 | 55.000 | 21.43 | 0.00 | 0.00 | 4.79 |
3180 | 3500 | 0.253915 | ATTACAACCCAGGGCCCCTA | 60.254 | 55.000 | 21.43 | 0.00 | 29.64 | 3.53 |
3181 | 3501 | 1.209523 | TTACAACCCAGGGCCCCTAC | 61.210 | 60.000 | 21.43 | 0.00 | 29.64 | 3.18 |
3182 | 3502 | 2.127685 | TACAACCCAGGGCCCCTACT | 62.128 | 60.000 | 21.43 | 0.00 | 29.64 | 2.57 |
3183 | 3503 | 1.307517 | CAACCCAGGGCCCCTACTA | 60.308 | 63.158 | 21.43 | 0.00 | 29.64 | 1.82 |
3184 | 3504 | 0.697854 | CAACCCAGGGCCCCTACTAT | 60.698 | 60.000 | 21.43 | 0.00 | 29.64 | 2.12 |
3185 | 3505 | 0.954203 | AACCCAGGGCCCCTACTATA | 59.046 | 55.000 | 21.43 | 0.00 | 29.64 | 1.31 |
3186 | 3506 | 0.954203 | ACCCAGGGCCCCTACTATAA | 59.046 | 55.000 | 21.43 | 0.00 | 29.64 | 0.98 |
3187 | 3507 | 1.299005 | ACCCAGGGCCCCTACTATAAA | 59.701 | 52.381 | 21.43 | 0.00 | 29.64 | 1.40 |
3188 | 3508 | 1.985895 | CCCAGGGCCCCTACTATAAAG | 59.014 | 57.143 | 21.43 | 0.00 | 29.64 | 1.85 |
3189 | 3509 | 2.428783 | CCCAGGGCCCCTACTATAAAGA | 60.429 | 54.545 | 21.43 | 0.00 | 29.64 | 2.52 |
3190 | 3510 | 3.532102 | CCAGGGCCCCTACTATAAAGAT | 58.468 | 50.000 | 21.43 | 0.00 | 29.64 | 2.40 |
3191 | 3511 | 4.514050 | CCCAGGGCCCCTACTATAAAGATA | 60.514 | 50.000 | 21.43 | 0.00 | 29.64 | 1.98 |
3192 | 3512 | 5.098663 | CCAGGGCCCCTACTATAAAGATAA | 58.901 | 45.833 | 21.43 | 0.00 | 29.64 | 1.75 |
3193 | 3513 | 5.550403 | CCAGGGCCCCTACTATAAAGATAAA | 59.450 | 44.000 | 21.43 | 0.00 | 29.64 | 1.40 |
3194 | 3514 | 6.045106 | CCAGGGCCCCTACTATAAAGATAAAA | 59.955 | 42.308 | 21.43 | 0.00 | 29.64 | 1.52 |
3195 | 3515 | 7.422089 | CCAGGGCCCCTACTATAAAGATAAAAA | 60.422 | 40.741 | 21.43 | 0.00 | 29.64 | 1.94 |
3196 | 3516 | 8.170730 | CAGGGCCCCTACTATAAAGATAAAAAT | 58.829 | 37.037 | 21.43 | 0.00 | 29.64 | 1.82 |
3197 | 3517 | 9.414449 | AGGGCCCCTACTATAAAGATAAAAATA | 57.586 | 33.333 | 21.43 | 0.00 | 28.47 | 1.40 |
3534 | 3878 | 2.143122 | CGCCTTTCGCACATGGTATAT | 58.857 | 47.619 | 0.00 | 0.00 | 37.30 | 0.86 |
3569 | 3913 | 4.393990 | TCTTCATCACGTCTAGTTCGCTAA | 59.606 | 41.667 | 9.22 | 0.00 | 0.00 | 3.09 |
3613 | 3959 | 3.036429 | GCCGCCATGTCCTCCTCTT | 62.036 | 63.158 | 0.00 | 0.00 | 0.00 | 2.85 |
3615 | 3961 | 1.333636 | CCGCCATGTCCTCCTCTTCT | 61.334 | 60.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3618 | 3964 | 0.179089 | CCATGTCCTCCTCTTCTGCG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 5.18 |
3658 | 4004 | 3.509740 | GGTCAAGTTACCGAGAAGCTAC | 58.490 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
3775 | 4121 | 1.143183 | AAGCACGTCGTCACCAAGT | 59.857 | 52.632 | 0.00 | 0.00 | 0.00 | 3.16 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
13 | 14 | 2.388232 | GCAAACCTAGGTCGCGGTG | 61.388 | 63.158 | 16.64 | 9.67 | 32.86 | 4.94 |
18 | 19 | 1.737793 | GACCAATGCAAACCTAGGTCG | 59.262 | 52.381 | 16.64 | 10.95 | 36.55 | 4.79 |
19 | 20 | 1.737793 | CGACCAATGCAAACCTAGGTC | 59.262 | 52.381 | 16.64 | 3.16 | 41.53 | 3.85 |
20 | 21 | 1.821216 | CGACCAATGCAAACCTAGGT | 58.179 | 50.000 | 9.21 | 9.21 | 0.00 | 3.08 |
23 | 24 | 1.302383 | CCGCGACCAATGCAAACCTA | 61.302 | 55.000 | 8.23 | 0.00 | 0.00 | 3.08 |
24 | 25 | 2.625823 | CCGCGACCAATGCAAACCT | 61.626 | 57.895 | 8.23 | 0.00 | 0.00 | 3.50 |
48 | 49 | 2.357517 | CTCCTGTGCCGTGTGGAC | 60.358 | 66.667 | 0.00 | 0.00 | 37.49 | 4.02 |
49 | 50 | 1.691195 | TTTCTCCTGTGCCGTGTGGA | 61.691 | 55.000 | 0.00 | 0.00 | 37.49 | 4.02 |
50 | 51 | 1.227823 | TTTCTCCTGTGCCGTGTGG | 60.228 | 57.895 | 0.00 | 0.00 | 38.77 | 4.17 |
52 | 53 | 1.598130 | GCTTTCTCCTGTGCCGTGT | 60.598 | 57.895 | 0.00 | 0.00 | 0.00 | 4.49 |
58 | 59 | 1.089920 | CCATTCCGCTTTCTCCTGTG | 58.910 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
59 | 60 | 0.678048 | GCCATTCCGCTTTCTCCTGT | 60.678 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
60 | 61 | 0.393537 | AGCCATTCCGCTTTCTCCTG | 60.394 | 55.000 | 0.00 | 0.00 | 34.73 | 3.86 |
133 | 134 | 1.024579 | GTCATCATTCCAACGGCCGT | 61.025 | 55.000 | 28.70 | 28.70 | 0.00 | 5.68 |
137 | 138 | 0.645355 | CGTCGTCATCATTCCAACGG | 59.355 | 55.000 | 0.00 | 0.00 | 35.89 | 4.44 |
140 | 141 | 2.549926 | CCATCGTCGTCATCATTCCAA | 58.450 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
146 | 147 | 1.953686 | TCTATGCCATCGTCGTCATCA | 59.046 | 47.619 | 0.00 | 0.00 | 0.00 | 3.07 |
149 | 150 | 0.028902 | CGTCTATGCCATCGTCGTCA | 59.971 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
155 | 156 | 1.278172 | CTTCGCCGTCTATGCCATCG | 61.278 | 60.000 | 0.00 | 0.00 | 0.00 | 3.84 |
160 | 161 | 3.330853 | CGCCTTCGCCGTCTATGC | 61.331 | 66.667 | 0.00 | 0.00 | 0.00 | 3.14 |
163 | 164 | 4.124351 | CACCGCCTTCGCCGTCTA | 62.124 | 66.667 | 0.00 | 0.00 | 0.00 | 2.59 |
188 | 189 | 1.808390 | GTACACGTAGCCGCCTTGG | 60.808 | 63.158 | 0.00 | 0.00 | 42.50 | 3.61 |
189 | 190 | 2.156446 | CGTACACGTAGCCGCCTTG | 61.156 | 63.158 | 0.00 | 0.00 | 37.70 | 3.61 |
190 | 191 | 2.180017 | CGTACACGTAGCCGCCTT | 59.820 | 61.111 | 0.00 | 0.00 | 37.70 | 4.35 |
191 | 192 | 2.747460 | TCGTACACGTAGCCGCCT | 60.747 | 61.111 | 1.19 | 0.00 | 40.80 | 5.52 |
219 | 220 | 7.870588 | AACTAAAAGAGACTAACTTGTAGCG | 57.129 | 36.000 | 0.00 | 0.00 | 38.20 | 4.26 |
232 | 233 | 6.990349 | ACCGATCAACTGAAAACTAAAAGAGA | 59.010 | 34.615 | 0.00 | 0.00 | 0.00 | 3.10 |
235 | 236 | 7.414436 | TCAACCGATCAACTGAAAACTAAAAG | 58.586 | 34.615 | 0.00 | 0.00 | 0.00 | 2.27 |
242 | 243 | 7.040062 | ACCATATTTCAACCGATCAACTGAAAA | 60.040 | 33.333 | 13.82 | 7.13 | 40.21 | 2.29 |
246 | 247 | 5.220854 | GGACCATATTTCAACCGATCAACTG | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 3.16 |
253 | 254 | 7.340743 | ACATAAAATGGACCATATTTCAACCGA | 59.659 | 33.333 | 7.59 | 0.00 | 33.60 | 4.69 |
287 | 288 | 6.128445 | ACGACAGATTTCAGCATAGTTTGAAG | 60.128 | 38.462 | 0.00 | 0.00 | 35.01 | 3.02 |
307 | 308 | 5.168569 | GGACAGATCTTATCAAACACGACA | 58.831 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
358 | 359 | 5.749109 | GCCGACTATCTAACCATATATGCAC | 59.251 | 44.000 | 7.24 | 0.00 | 0.00 | 4.57 |
360 | 361 | 6.150396 | AGCCGACTATCTAACCATATATGC | 57.850 | 41.667 | 7.24 | 0.00 | 0.00 | 3.14 |
363 | 364 | 5.737860 | TCGAGCCGACTATCTAACCATATA | 58.262 | 41.667 | 0.00 | 0.00 | 0.00 | 0.86 |
365 | 366 | 4.001652 | CTCGAGCCGACTATCTAACCATA | 58.998 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
367 | 368 | 2.219458 | CTCGAGCCGACTATCTAACCA | 58.781 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
372 | 373 | 0.878416 | GATGCTCGAGCCGACTATCT | 59.122 | 55.000 | 33.23 | 8.54 | 41.18 | 1.98 |
376 | 377 | 1.599606 | AAGTGATGCTCGAGCCGACT | 61.600 | 55.000 | 33.23 | 26.33 | 41.18 | 4.18 |
385 | 386 | 2.160417 | CAGTCCGGAAAAAGTGATGCTC | 59.840 | 50.000 | 5.23 | 0.00 | 0.00 | 4.26 |
386 | 387 | 2.154462 | CAGTCCGGAAAAAGTGATGCT | 58.846 | 47.619 | 5.23 | 0.00 | 0.00 | 3.79 |
443 | 444 | 1.141881 | CTCCGACGTTGATCCCTGG | 59.858 | 63.158 | 3.74 | 0.00 | 0.00 | 4.45 |
444 | 445 | 0.747255 | ATCTCCGACGTTGATCCCTG | 59.253 | 55.000 | 3.74 | 0.00 | 0.00 | 4.45 |
457 | 458 | 4.451241 | CCACTCATGGCATCTCCG | 57.549 | 61.111 | 0.00 | 0.00 | 39.82 | 4.63 |
483 | 484 | 2.149578 | GCACATCCCATAGCATCTGTC | 58.850 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
486 | 487 | 2.304180 | GGTAGCACATCCCATAGCATCT | 59.696 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
507 | 516 | 1.400846 | ACACATGCCTCGTAGTCGTAG | 59.599 | 52.381 | 0.00 | 0.00 | 38.33 | 3.51 |
508 | 517 | 1.131693 | CACACATGCCTCGTAGTCGTA | 59.868 | 52.381 | 0.00 | 0.00 | 38.33 | 3.43 |
509 | 518 | 0.109272 | CACACATGCCTCGTAGTCGT | 60.109 | 55.000 | 0.00 | 0.00 | 38.33 | 4.34 |
510 | 519 | 1.413767 | GCACACATGCCTCGTAGTCG | 61.414 | 60.000 | 0.00 | 0.00 | 46.97 | 4.18 |
511 | 520 | 2.373938 | GCACACATGCCTCGTAGTC | 58.626 | 57.895 | 0.00 | 0.00 | 46.97 | 2.59 |
512 | 521 | 4.598257 | GCACACATGCCTCGTAGT | 57.402 | 55.556 | 0.00 | 0.00 | 46.97 | 2.73 |
549 | 558 | 1.515736 | GTGGCTGCGTACGTCCTAC | 60.516 | 63.158 | 17.90 | 9.53 | 0.00 | 3.18 |
552 | 561 | 2.809601 | CTGTGGCTGCGTACGTCC | 60.810 | 66.667 | 17.90 | 15.46 | 0.00 | 4.79 |
553 | 562 | 1.663702 | AACTGTGGCTGCGTACGTC | 60.664 | 57.895 | 17.90 | 9.82 | 0.00 | 4.34 |
840 | 881 | 2.359967 | GGACAAGGAGACGGGAGGG | 61.360 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
872 | 913 | 1.663695 | AAGCTACGTTGTGCAAGTGT | 58.336 | 45.000 | 0.00 | 0.00 | 0.00 | 3.55 |
888 | 929 | 1.527433 | GGTGGTGCTGGGAGAAAAGC | 61.527 | 60.000 | 0.00 | 0.00 | 39.96 | 3.51 |
925 | 966 | 3.244078 | CCTCCTTACCAGCATATAACGCA | 60.244 | 47.826 | 0.89 | 0.00 | 0.00 | 5.24 |
936 | 977 | 0.827368 | GGTGAGCTCCTCCTTACCAG | 59.173 | 60.000 | 12.15 | 0.00 | 40.26 | 4.00 |
939 | 980 | 1.406205 | GCAAGGTGAGCTCCTCCTTAC | 60.406 | 57.143 | 28.10 | 22.51 | 44.50 | 2.34 |
942 | 983 | 0.839853 | AAGCAAGGTGAGCTCCTCCT | 60.840 | 55.000 | 18.17 | 18.17 | 42.53 | 3.69 |
973 | 1021 | 4.096003 | ATCGGCCGTTCCCCTGTG | 62.096 | 66.667 | 27.15 | 0.00 | 0.00 | 3.66 |
984 | 1032 | 1.595382 | CATCTTGACCCGATCGGCC | 60.595 | 63.158 | 29.12 | 21.23 | 33.26 | 6.13 |
1039 | 1087 | 4.586235 | ACCAGCACCAGCACCACC | 62.586 | 66.667 | 0.00 | 0.00 | 45.49 | 4.61 |
1040 | 1088 | 3.289834 | CACCAGCACCAGCACCAC | 61.290 | 66.667 | 0.00 | 0.00 | 45.49 | 4.16 |
1042 | 1090 | 4.962836 | AGCACCAGCACCAGCACC | 62.963 | 66.667 | 0.00 | 0.00 | 45.49 | 5.01 |
1043 | 1091 | 3.667282 | CAGCACCAGCACCAGCAC | 61.667 | 66.667 | 0.00 | 0.00 | 45.49 | 4.40 |
1044 | 1092 | 4.960866 | CCAGCACCAGCACCAGCA | 62.961 | 66.667 | 0.00 | 0.00 | 45.49 | 4.41 |
1045 | 1093 | 4.962836 | ACCAGCACCAGCACCAGC | 62.963 | 66.667 | 0.00 | 0.00 | 45.49 | 4.85 |
1046 | 1094 | 2.981909 | CACCAGCACCAGCACCAG | 60.982 | 66.667 | 0.00 | 0.00 | 45.49 | 4.00 |
1048 | 1096 | 4.962836 | AGCACCAGCACCAGCACC | 62.963 | 66.667 | 0.00 | 0.00 | 45.49 | 5.01 |
1049 | 1097 | 3.667282 | CAGCACCAGCACCAGCAC | 61.667 | 66.667 | 0.00 | 0.00 | 45.49 | 4.40 |
1050 | 1098 | 4.960866 | CCAGCACCAGCACCAGCA | 62.961 | 66.667 | 0.00 | 0.00 | 45.49 | 4.41 |
1051 | 1099 | 4.962836 | ACCAGCACCAGCACCAGC | 62.963 | 66.667 | 0.00 | 0.00 | 45.49 | 4.85 |
1052 | 1100 | 2.981909 | CACCAGCACCAGCACCAG | 60.982 | 66.667 | 0.00 | 0.00 | 45.49 | 4.00 |
1054 | 1102 | 4.962836 | AGCACCAGCACCAGCACC | 62.963 | 66.667 | 0.00 | 0.00 | 45.49 | 5.01 |
1055 | 1103 | 3.667282 | CAGCACCAGCACCAGCAC | 61.667 | 66.667 | 0.00 | 0.00 | 45.49 | 4.40 |
1056 | 1104 | 4.960866 | CCAGCACCAGCACCAGCA | 62.961 | 66.667 | 0.00 | 0.00 | 45.49 | 4.41 |
1222 | 1270 | 3.281395 | TGGCGTGACGACTGACGA | 61.281 | 61.111 | 13.72 | 0.00 | 45.77 | 4.20 |
1224 | 1272 | 2.016704 | CTGTGGCGTGACGACTGAC | 61.017 | 63.158 | 13.72 | 2.84 | 35.04 | 3.51 |
1225 | 1273 | 2.335011 | CTGTGGCGTGACGACTGA | 59.665 | 61.111 | 13.72 | 0.00 | 35.04 | 3.41 |
1226 | 1274 | 2.027605 | ACTGTGGCGTGACGACTG | 59.972 | 61.111 | 13.72 | 7.26 | 35.04 | 3.51 |
1227 | 1275 | 2.027605 | CACTGTGGCGTGACGACT | 59.972 | 61.111 | 13.72 | 0.00 | 35.04 | 4.18 |
1228 | 1276 | 3.702555 | GCACTGTGGCGTGACGAC | 61.703 | 66.667 | 10.10 | 6.49 | 37.06 | 4.34 |
1283 | 1331 | 5.942236 | TGATGCTCAAAGAAGCTAAAGTGAT | 59.058 | 36.000 | 0.00 | 0.00 | 42.94 | 3.06 |
1386 | 1497 | 1.597461 | GTGGTACAGAGTGAGGCCC | 59.403 | 63.158 | 0.00 | 0.00 | 41.80 | 5.80 |
1428 | 1545 | 2.682856 | GTGGAGCAGAGTTGTTGAACAA | 59.317 | 45.455 | 6.66 | 6.66 | 35.42 | 2.83 |
1474 | 1592 | 3.481453 | ACTGCAAAAGGGAAGAGAAGAC | 58.519 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
1475 | 1593 | 3.496870 | GGACTGCAAAAGGGAAGAGAAGA | 60.497 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
1476 | 1594 | 2.816672 | GGACTGCAAAAGGGAAGAGAAG | 59.183 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1477 | 1595 | 2.174639 | TGGACTGCAAAAGGGAAGAGAA | 59.825 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
1478 | 1596 | 1.774254 | TGGACTGCAAAAGGGAAGAGA | 59.226 | 47.619 | 0.00 | 0.00 | 0.00 | 3.10 |
1508 | 1626 | 6.016024 | TGTTAATTCGTGAGTGGTACTGTACT | 60.016 | 38.462 | 16.79 | 0.00 | 0.00 | 2.73 |
1513 | 1631 | 5.204409 | TGTGTTAATTCGTGAGTGGTACT | 57.796 | 39.130 | 0.00 | 0.00 | 0.00 | 2.73 |
1514 | 1632 | 4.143179 | GCTGTGTTAATTCGTGAGTGGTAC | 60.143 | 45.833 | 0.00 | 0.00 | 0.00 | 3.34 |
1515 | 1633 | 3.991773 | GCTGTGTTAATTCGTGAGTGGTA | 59.008 | 43.478 | 0.00 | 0.00 | 0.00 | 3.25 |
1516 | 1634 | 2.806244 | GCTGTGTTAATTCGTGAGTGGT | 59.194 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
1517 | 1635 | 2.159841 | CGCTGTGTTAATTCGTGAGTGG | 60.160 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1518 | 1636 | 2.721797 | GCGCTGTGTTAATTCGTGAGTG | 60.722 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1525 | 1644 | 3.628017 | ACAAACAGCGCTGTGTTAATTC | 58.372 | 40.909 | 41.21 | 0.00 | 44.13 | 2.17 |
1605 | 1727 | 3.270877 | GTGTACCTCCATTGTTGGCTAG | 58.729 | 50.000 | 0.00 | 0.00 | 43.29 | 3.42 |
1632 | 1760 | 3.616560 | GCTGTAGCAGTTGCAAGGTACTA | 60.617 | 47.826 | 21.47 | 10.50 | 45.16 | 1.82 |
1633 | 1761 | 2.872038 | GCTGTAGCAGTTGCAAGGTACT | 60.872 | 50.000 | 21.47 | 11.30 | 45.16 | 2.73 |
1634 | 1762 | 1.464997 | GCTGTAGCAGTTGCAAGGTAC | 59.535 | 52.381 | 16.81 | 16.81 | 45.16 | 3.34 |
1702 | 1830 | 2.995939 | GGTAAAAGCAAAGATGGCAAGC | 59.004 | 45.455 | 0.00 | 0.00 | 0.00 | 4.01 |
1708 | 1836 | 7.040409 | AGGTAAACTCTGGTAAAAGCAAAGATG | 60.040 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
1716 | 1844 | 4.312443 | TGCGAGGTAAACTCTGGTAAAAG | 58.688 | 43.478 | 0.00 | 0.00 | 44.33 | 2.27 |
1822 | 1959 | 7.341805 | ACAGGTATTTTGCTCTCAGATATGTT | 58.658 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
1825 | 1962 | 8.814038 | AAAACAGGTATTTTGCTCTCAGATAT | 57.186 | 30.769 | 0.00 | 0.00 | 30.56 | 1.63 |
1849 | 1986 | 6.494666 | TCTCTCCCAGTAGACAAAAGAAAA | 57.505 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
1853 | 1990 | 8.848474 | TTTTAATCTCTCCCAGTAGACAAAAG | 57.152 | 34.615 | 0.00 | 0.00 | 0.00 | 2.27 |
1883 | 2020 | 5.582269 | TGTTACTCGCTATTGACTAGTACGT | 59.418 | 40.000 | 0.00 | 0.00 | 0.00 | 3.57 |
1884 | 2021 | 6.040962 | TGTTACTCGCTATTGACTAGTACG | 57.959 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
1885 | 2022 | 7.014092 | ACTGTTACTCGCTATTGACTAGTAC | 57.986 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
1886 | 2023 | 8.899427 | ATACTGTTACTCGCTATTGACTAGTA | 57.101 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
1887 | 2024 | 7.804843 | ATACTGTTACTCGCTATTGACTAGT | 57.195 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1888 | 2025 | 9.517609 | AAAATACTGTTACTCGCTATTGACTAG | 57.482 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1912 | 2049 | 5.631096 | CGCATCTTCGAGATAAGCTCATAAA | 59.369 | 40.000 | 0.00 | 0.00 | 44.15 | 1.40 |
1920 | 2091 | 0.432738 | GCGCGCATCTTCGAGATAAG | 59.567 | 55.000 | 29.10 | 0.00 | 32.12 | 1.73 |
1924 | 2095 | 4.128388 | TGGCGCGCATCTTCGAGA | 62.128 | 61.111 | 34.42 | 1.02 | 0.00 | 4.04 |
1942 | 2113 | 0.734889 | CTAAACAGAATGCAGCGGGG | 59.265 | 55.000 | 0.00 | 0.00 | 42.53 | 5.73 |
1973 | 2152 | 5.350504 | AGTTAAGCTCTAGCACATGATGT | 57.649 | 39.130 | 0.00 | 0.00 | 45.16 | 3.06 |
1990 | 2169 | 6.894654 | ACTCCTGATGATCTCTGAGAAGTTAA | 59.105 | 38.462 | 12.00 | 0.00 | 31.69 | 2.01 |
2014 | 2193 | 5.841957 | ACAATAATGCTCCATTTCCAGAC | 57.158 | 39.130 | 0.00 | 0.00 | 35.54 | 3.51 |
2018 | 2197 | 6.403527 | GGCAAAAACAATAATGCTCCATTTCC | 60.404 | 38.462 | 0.00 | 0.00 | 38.79 | 3.13 |
2048 | 2227 | 0.764271 | TTCACAGTCCCATGCAGTGA | 59.236 | 50.000 | 0.00 | 0.00 | 37.43 | 3.41 |
2049 | 2228 | 1.538512 | CTTTCACAGTCCCATGCAGTG | 59.461 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
2050 | 2229 | 1.143684 | ACTTTCACAGTCCCATGCAGT | 59.856 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
2089 | 2268 | 2.584835 | TCTGGTCCCAATTTCTGGTG | 57.415 | 50.000 | 0.00 | 0.00 | 44.76 | 4.17 |
2120 | 2299 | 9.809096 | TGATCAGATCTCACTTTTCAGTTATAC | 57.191 | 33.333 | 11.83 | 0.00 | 0.00 | 1.47 |
2122 | 2301 | 8.538701 | ACTGATCAGATCTCACTTTTCAGTTAT | 58.461 | 33.333 | 29.27 | 0.00 | 36.77 | 1.89 |
2153 | 2332 | 7.612677 | AGCTAGTACTTGCTATTAACTTGTGT | 58.387 | 34.615 | 27.05 | 1.94 | 39.72 | 3.72 |
2265 | 2574 | 7.321153 | GCTTGACAGTAAGTAATCAGTAGGAA | 58.679 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
2288 | 2600 | 5.542779 | AGAAAAAGACACATAGAAGACGCT | 58.457 | 37.500 | 0.00 | 0.00 | 0.00 | 5.07 |
2314 | 2626 | 7.121382 | AGTCAAATCATCATACAATCCCAACT | 58.879 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
2319 | 2631 | 8.450578 | TGGTTAGTCAAATCATCATACAATCC | 57.549 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
2336 | 2648 | 8.797266 | AAGAAATGTTTTCGAAATGGTTAGTC | 57.203 | 30.769 | 12.12 | 4.25 | 0.00 | 2.59 |
2369 | 2681 | 0.731417 | CTCAAGCGGCATTTCTCTGG | 59.269 | 55.000 | 1.45 | 0.00 | 0.00 | 3.86 |
2430 | 2742 | 4.380531 | CTTGTCTAACCTCAAGCTGTTCA | 58.619 | 43.478 | 0.00 | 0.00 | 35.42 | 3.18 |
2453 | 2765 | 4.039004 | AGGAGTATAAGCAGTGATGCAGAG | 59.961 | 45.833 | 2.73 | 0.00 | 37.25 | 3.35 |
2517 | 2835 | 9.847224 | TTCTGCACCTGATCGTAGATATATATA | 57.153 | 33.333 | 0.00 | 0.00 | 45.12 | 0.86 |
2518 | 2836 | 8.753497 | TTCTGCACCTGATCGTAGATATATAT | 57.247 | 34.615 | 0.00 | 0.00 | 45.12 | 0.86 |
2519 | 2837 | 8.047310 | TCTTCTGCACCTGATCGTAGATATATA | 58.953 | 37.037 | 0.00 | 0.00 | 45.12 | 0.86 |
2520 | 2838 | 6.887002 | TCTTCTGCACCTGATCGTAGATATAT | 59.113 | 38.462 | 0.00 | 0.00 | 45.12 | 0.86 |
2528 | 2846 | 1.674221 | GCTTCTTCTGCACCTGATCGT | 60.674 | 52.381 | 0.00 | 0.00 | 0.00 | 3.73 |
2550 | 2868 | 0.952984 | GGGCCTCTATTCGCATCTGC | 60.953 | 60.000 | 0.84 | 0.00 | 37.78 | 4.26 |
2656 | 2974 | 0.247736 | AAGTCCGTCAGCTGTGATCC | 59.752 | 55.000 | 14.67 | 0.49 | 34.36 | 3.36 |
2667 | 2985 | 1.275573 | AGAGCCAGGTTAAAGTCCGTC | 59.724 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
2676 | 2994 | 2.666098 | GCCCGGAAGAGCCAGGTTA | 61.666 | 63.158 | 0.73 | 0.00 | 36.50 | 2.85 |
2682 | 3000 | 2.436824 | GACAAGCCCGGAAGAGCC | 60.437 | 66.667 | 0.73 | 0.00 | 0.00 | 4.70 |
2731 | 3049 | 5.827797 | ACATATGTTTCACCAACTGTTCACT | 59.172 | 36.000 | 1.41 | 0.00 | 36.21 | 3.41 |
2841 | 3159 | 2.278332 | GGAGCAGGTCCTCAGTTTTT | 57.722 | 50.000 | 11.76 | 0.00 | 42.99 | 1.94 |
2942 | 3261 | 6.257630 | GCTGAAACACATCTCTATTTCCTCTC | 59.742 | 42.308 | 0.00 | 0.00 | 31.39 | 3.20 |
3018 | 3338 | 0.729116 | CATTCTAAGCACTGCCACGG | 59.271 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
3019 | 3339 | 0.097674 | GCATTCTAAGCACTGCCACG | 59.902 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
3044 | 3364 | 6.966534 | ATCACAGAGGAATTCAAACTTGTT | 57.033 | 33.333 | 7.93 | 0.00 | 0.00 | 2.83 |
3055 | 3375 | 9.807649 | GCAAATTTAACATTATCACAGAGGAAT | 57.192 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
3058 | 3378 | 8.461222 | TCAGCAAATTTAACATTATCACAGAGG | 58.539 | 33.333 | 0.00 | 0.00 | 0.00 | 3.69 |
3111 | 3431 | 2.233922 | ACGGCCCTGATGCATATACTAC | 59.766 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
3125 | 3445 | 1.202651 | CGAAATATCAGGAACGGCCCT | 60.203 | 52.381 | 0.00 | 0.00 | 37.37 | 5.19 |
3126 | 3446 | 1.226746 | CGAAATATCAGGAACGGCCC | 58.773 | 55.000 | 0.00 | 0.00 | 37.37 | 5.80 |
3127 | 3447 | 1.226746 | CCGAAATATCAGGAACGGCC | 58.773 | 55.000 | 0.00 | 0.00 | 34.36 | 6.13 |
3128 | 3448 | 1.226746 | CCCGAAATATCAGGAACGGC | 58.773 | 55.000 | 0.00 | 0.00 | 39.19 | 5.68 |
3129 | 3449 | 1.542547 | CCCCCGAAATATCAGGAACGG | 60.543 | 57.143 | 0.00 | 0.00 | 40.03 | 4.44 |
3130 | 3450 | 1.878953 | CCCCCGAAATATCAGGAACG | 58.121 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
3131 | 3451 | 1.605753 | GCCCCCGAAATATCAGGAAC | 58.394 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
3132 | 3452 | 0.476771 | GGCCCCCGAAATATCAGGAA | 59.523 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3133 | 3453 | 1.423794 | GGGCCCCCGAAATATCAGGA | 61.424 | 60.000 | 12.23 | 0.00 | 0.00 | 3.86 |
3134 | 3454 | 1.074951 | GGGCCCCCGAAATATCAGG | 59.925 | 63.158 | 12.23 | 0.00 | 0.00 | 3.86 |
3135 | 3455 | 0.250901 | CTGGGCCCCCGAAATATCAG | 60.251 | 60.000 | 22.27 | 0.79 | 39.42 | 2.90 |
3136 | 3456 | 1.715019 | CCTGGGCCCCCGAAATATCA | 61.715 | 60.000 | 22.27 | 0.00 | 39.42 | 2.15 |
3137 | 3457 | 1.074951 | CCTGGGCCCCCGAAATATC | 59.925 | 63.158 | 22.27 | 0.00 | 39.42 | 1.63 |
3138 | 3458 | 2.469765 | CCCTGGGCCCCCGAAATAT | 61.470 | 63.158 | 22.27 | 0.00 | 39.42 | 1.28 |
3139 | 3459 | 3.100514 | CCCTGGGCCCCCGAAATA | 61.101 | 66.667 | 22.27 | 0.00 | 39.42 | 1.40 |
3149 | 3469 | 0.172578 | GTTGTAATTTCGCCCTGGGC | 59.827 | 55.000 | 28.17 | 28.17 | 46.75 | 5.36 |
3150 | 3470 | 0.815095 | GGTTGTAATTTCGCCCTGGG | 59.185 | 55.000 | 8.86 | 8.86 | 0.00 | 4.45 |
3151 | 3471 | 0.815095 | GGGTTGTAATTTCGCCCTGG | 59.185 | 55.000 | 7.11 | 0.00 | 36.49 | 4.45 |
3152 | 3472 | 1.472480 | CTGGGTTGTAATTTCGCCCTG | 59.528 | 52.381 | 13.11 | 9.97 | 39.97 | 4.45 |
3153 | 3473 | 1.615919 | CCTGGGTTGTAATTTCGCCCT | 60.616 | 52.381 | 13.11 | 0.00 | 39.97 | 5.19 |
3154 | 3474 | 0.815095 | CCTGGGTTGTAATTTCGCCC | 59.185 | 55.000 | 7.34 | 7.34 | 39.73 | 6.13 |
3155 | 3475 | 0.815095 | CCCTGGGTTGTAATTTCGCC | 59.185 | 55.000 | 3.97 | 0.00 | 0.00 | 5.54 |
3156 | 3476 | 0.172578 | GCCCTGGGTTGTAATTTCGC | 59.827 | 55.000 | 15.56 | 0.00 | 0.00 | 4.70 |
3157 | 3477 | 0.815095 | GGCCCTGGGTTGTAATTTCG | 59.185 | 55.000 | 15.56 | 0.00 | 0.00 | 3.46 |
3158 | 3478 | 1.191535 | GGGCCCTGGGTTGTAATTTC | 58.808 | 55.000 | 17.04 | 0.00 | 0.00 | 2.17 |
3159 | 3479 | 0.252513 | GGGGCCCTGGGTTGTAATTT | 60.253 | 55.000 | 24.38 | 0.00 | 0.00 | 1.82 |
3160 | 3480 | 1.153041 | AGGGGCCCTGGGTTGTAATT | 61.153 | 55.000 | 28.21 | 0.00 | 29.57 | 1.40 |
3161 | 3481 | 0.253915 | TAGGGGCCCTGGGTTGTAAT | 60.254 | 55.000 | 35.70 | 7.15 | 34.61 | 1.89 |
3162 | 3482 | 1.163801 | TAGGGGCCCTGGGTTGTAA | 59.836 | 57.895 | 35.70 | 9.68 | 34.61 | 2.41 |
3163 | 3483 | 1.617233 | GTAGGGGCCCTGGGTTGTA | 60.617 | 63.158 | 35.70 | 10.57 | 34.61 | 2.41 |
3164 | 3484 | 2.127685 | TAGTAGGGGCCCTGGGTTGT | 62.128 | 60.000 | 35.70 | 14.50 | 34.61 | 3.32 |
3165 | 3485 | 0.697854 | ATAGTAGGGGCCCTGGGTTG | 60.698 | 60.000 | 35.70 | 0.00 | 34.61 | 3.77 |
3166 | 3486 | 0.954203 | TATAGTAGGGGCCCTGGGTT | 59.046 | 55.000 | 35.70 | 18.87 | 34.61 | 4.11 |
3167 | 3487 | 0.954203 | TTATAGTAGGGGCCCTGGGT | 59.046 | 55.000 | 35.70 | 20.64 | 34.61 | 4.51 |
3168 | 3488 | 1.985895 | CTTTATAGTAGGGGCCCTGGG | 59.014 | 57.143 | 35.70 | 8.86 | 34.61 | 4.45 |
3169 | 3489 | 2.986050 | TCTTTATAGTAGGGGCCCTGG | 58.014 | 52.381 | 35.70 | 13.54 | 34.61 | 4.45 |
3170 | 3490 | 6.697641 | TTTATCTTTATAGTAGGGGCCCTG | 57.302 | 41.667 | 35.70 | 15.73 | 34.61 | 4.45 |
3171 | 3491 | 7.716832 | TTTTTATCTTTATAGTAGGGGCCCT | 57.283 | 36.000 | 31.38 | 31.38 | 37.71 | 5.19 |
3278 | 3598 | 9.883142 | TGACATGATGATGTTTAACATACACTA | 57.117 | 29.630 | 10.82 | 4.84 | 43.22 | 2.74 |
3279 | 3599 | 8.791327 | TGACATGATGATGTTTAACATACACT | 57.209 | 30.769 | 10.82 | 2.07 | 43.22 | 3.55 |
3280 | 3600 | 8.668353 | ACTGACATGATGATGTTTAACATACAC | 58.332 | 33.333 | 10.82 | 5.88 | 43.22 | 2.90 |
3281 | 3601 | 8.791327 | ACTGACATGATGATGTTTAACATACA | 57.209 | 30.769 | 10.82 | 11.46 | 43.22 | 2.29 |
3282 | 3602 | 8.882736 | TGACTGACATGATGATGTTTAACATAC | 58.117 | 33.333 | 10.82 | 6.52 | 43.22 | 2.39 |
3283 | 3603 | 8.882736 | GTGACTGACATGATGATGTTTAACATA | 58.117 | 33.333 | 10.82 | 0.00 | 43.22 | 2.29 |
3284 | 3604 | 7.413328 | CGTGACTGACATGATGATGTTTAACAT | 60.413 | 37.037 | 10.64 | 10.64 | 43.22 | 2.71 |
3367 | 3710 | 5.844004 | AGAGATAAGTACATGCGGTTTAGG | 58.156 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
3534 | 3878 | 3.369471 | CGTGATGAAGAAAAGGGGCTCTA | 60.369 | 47.826 | 0.00 | 0.00 | 0.00 | 2.43 |
3613 | 3959 | 2.281484 | GTTGGAGTTGGCCGCAGA | 60.281 | 61.111 | 0.00 | 0.00 | 0.00 | 4.26 |
3615 | 3961 | 3.842925 | GAGGTTGGAGTTGGCCGCA | 62.843 | 63.158 | 0.00 | 0.00 | 0.00 | 5.69 |
3618 | 3964 | 1.002011 | GGAGAGGTTGGAGTTGGCC | 60.002 | 63.158 | 0.00 | 0.00 | 0.00 | 5.36 |
3658 | 4004 | 0.035439 | AGAACATAGTTGGTGCGGGG | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
3775 | 4121 | 5.001232 | CGTTTCTTCTTTCCCATCCTTGTA | 58.999 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.