>input_sequence_41063
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-------ATGTTTGAAGGGATGGAGGGGATGAGCTACGGCGGCGGCGGTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTG
GGGCTGGGGCGGCGGCGCTGTCGTCGCGGGACCCCAAGCAGCGGCTGCGGTGGACGCCGGACCTCCACGACCGCTTCGTG
CACGCCGTCGCCAGGCTCGGCGGCCCCGACAGTGAGTAGTCTTCTTCGTTTGCTCCTCCTTCCCCCTGCTCGTCAGTCGT
CACGCCACAGTGCAACGCCGGCGATCATGTGCCTGATTCATCAGCTCACTATCA-----CT---TTAGCTTC-TTTGAGC
ATC-----------------------------------AGCTTAACTATA--------------CTGATTATTATTGTTG
CCTGCC-----AACAGAGGCGACGCCCAAGGCAGTGCTGAGGCTGATGGCCATGAAGGGCCTCACTCTGTACCACCTGAA
AAGCCACCTTCAGGTT------TGTTGTTCAACAACTCTGCTCCACTC-CTGCTCTTCGCTCATATCTCTTGTCTTCTCT
TCCCTTTTGCAGTCCAGTCCAGTGTAGTACAGTACC-ACTCACGAATTAACACAGCGCTGTTTGTTTTAT---CTTATCA
GAAATACAGGCTGGGAAAGCACACCAAGAAATCCACAGACCTGGAACTAGCCAACAATGGAGGTACA------CACATAT
AGTACCTTGCAACTGCTACAGCCAACGCCAAAATGCAGTCAAGCCAACGTTTCCCCTTCTAAACTCCAAGCTTGCCATCT
TTGCTTTTACCAGAGTTTACCTCGCAAGACATCAGCTTCCAAATCGGCGCGCCTCT---------TGCTGGACGCGACAC
CGCAAGGTAACTGGCTAGACATTTCTCCTCTCCCTCTGAACATATCTGAGAGCAAAATACCTGTTTTTTCTTTTGTCTAC
TGGGAGAGATTAAAAATATACGTACTAGTCAATAGCGAGTAACAGTATT-------------------------------
---TTATGAGCTTATCTCGAAGATGCGCGCCACCCCGCTGCATTCTGTTTAGTCAACTAAAAG--------ACATCATGT
GCTAGAGCTTAACTTCTCAGAGATCATCAGGAGTCTGGAAATGGAGCATTATTGTTTTTGCCTGCATCACTGCATGGGAC
TGTGAAAGTATGGATAGAACAAACTCACACCAGAAATTGGGACCAGATAGTCTAGTAAGTATAACTGAAAAGTGAGATCT
GATCAGTAGTTACACAAGTT------------------------------------------------------------
----------------------------------------------------------------------AATAGCAAGT
ACTAGCTTTTCTTGGCTGTAAAAATAATAATTTTGCCATTCCAAAAGTCTATATGCAAAGTTTCTTATACAGAGGCACTA
AGTTGAAATCCTATTCCTACTGATTACTTA---CTGTCAAGCGTCTTCTATGTGTCTTTTTCTTCAGTTGGGATTGTATG
ATGATTTGACTAACCATTTCGAAAACATTTCTTATGTGAACCAGAGAAATGCCGCTTGAGGATACCCTCAGGTATCAAAT
TCAGGTCCAAAGAGAACTGTGTGAACAGCTTGAGGTTAGACAAGCTCTGCATCACTGCTTATACTCCTAAACTCTGTATC
AT---GTAG---GTTAAAAATGCTTATATATATATATATATATCTACGATCAGGTGCAGAAGAAGCTGCAGATGCGAATA
GAGGCCCAAGGGAGGTATTTAAAGGAAATACTAGAGAAGGCTCAGGAAAACATTTCCTTTGATGCAAATGGATCTGCTGG
CCTAGAAAATACCGGATCACAGCTGACGGACTTTAACCTGGCTCTTCCGGGCTTGTCGGAGAATGGAACACAGGTGTATG
AAGAAAGCAGTGAACAGTTGGTGAAACATATGTCTGATGACAATCTTCATGATAATAATTTGGATTTTCAGCTCTACCGT
GTACGAAGTCAGGAGGCTAAGAGTGTCAAATGCACCCCAAAAACTGAGGACCTGCTCCTCTTAGACTTGAATATAAAAGG
AGGATATGACCTGTCTTCGAGAGGAATGCAAGGGTGA-------------------------------------------
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>chr2A_1_TraesCS2A01G441300
GCCGCCGCTAGGGCACCGCGACCTAGGTTTGCATTGGTCGCGGCGGTCGTCCACACGGCACAGGAGAAAGCGGAATGGCT
CCTCCATGAGTGCCTGGCGGCGGCCGGGCAAGGCGGTTGTGGCCTCGCGCCCTACGGCCGTTGGAATGATGACGACGATG
GCATAGACGGCGAAGGCGGTGCAGCCGGCCAAGGCGGCTACGTGTACGAGGTCGTCGTCCGCTACAAGTTAGTCTCTTTT
AGTTTTCAGTTGATCGGTTGAAATATGGTCCATTTTATGTAAATTATCTTCAAACTATGCTGAAATCTGTCGTGTTTGAT
AAGATCTGTCCGATGTATTCAATTTTATTTTGAAATGTGTGCATATATGGTTAGATAGTCGGCTCGAGCATCACTTTTTC
CGGACTGATTCTCACCGGTCCGCGGACGGACACGGTGTCCTATCCAGGGATCAACGTCGGAGATGCCATGAGTGGTGAGC
GGTGACAGATGC--------TATGGGATGTGCTACCTACGACTACGAGGCATGTGTGCAGCGTCACACACTACGTACGTA
GGACGTACGCAGCCACAGTTGGTTACCG---------------TCGGCGGCGTCGTGCTGGATCGACCGTCACAGTTGGT
TGGGCGTGGCGTGTCGCCGTCGCCGAGATGCCCGGCGTCGTCGACCGGCTTGTCGTCTTGTTTCTTGTGGCGTCTGCGTG
CGCTGCACCCACCAGCCACAGCCGGGCCGAGC---------AGATTCCGTTCCGCGCACAGACACATGACATGATGCCTT
GCACCCCCTC--------CCCGCGCCACCATCTCCGCTACCCCCTCTCGTCGTCTTGCGCTCCGGATCGAACATCTCTCC
CCCTCCCGTCTCCTTGTCCTCGCGTAGGCTTCACACTTGCACAACGTAGCTTTTCTCCCAGCACCACCACCTCAGTCAGC
AAGATTGCGTTATATGCTGGTAA-------GGAGGAGCTCACCTTGCTTGATCTTGCGAGCACAGGGGAACGGCCGATCG
GGTCAAGATGTTTGAAGGGATGGAGGGGATGAGCTACGGCGGCGGCGGTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTG
GGGCTGGGGCGGCGGCGCTGTCGTCGCGGGACCCCAAGCAGCGGCTGCGGTGGACGCCGGACCTCCACGACCGCTTCGTG
CACGCCGTCGCCAGGCTCGGCGGCCCCGACAGTGAGTAGTCTTCTTCGTTTGCTCCTCCTTCCCCCTGCTCGTCAGTCGT
CACGCCACAGTGCAACGCCGGCGATCATGTGCCTGATTCATCAGCTCACTATCA-----CT---TTAGCTTC-TTTGAGC
ATC-----------------------------------AGCTTAACTATA--------------CTGATTATTATTGTTG
CCTGCC-----AACAGAGGCGACGCCCAAGGCAGTGCTGAGGCTGATGGCCATGAAGGGCCTCACTCTGTACCACCTGAA
AAGCCACCTTCAGGTT------TGTTGTTCAACAACTCTGCTCCACTC-CTGCTCTTCGCTCATATCTCTTGTCTTCTCT
TCCCTTTTGCAGTCCAGTCCAGTGTAGTACAGTACC-ACTCACGAATTAACACAGCGCTGTTTGTTTTAT---CTTATCA
GAAATACAGGCTGGGAAAGCACACCAAGAAATCCACAGACCTGGAACTAGCCAACAATGGAGGTACA------CACATAT
AGTACCTTGCAACTGCTACAGCCAACGCCAAAATGCAGTCAAGCCAACGTTTCCCCTTCTAAACTCCAAGCTTGCCATCT
TTGCTTTTACCAGAGTTTACCTCGCAAGACATCAGCTTCCAAATCGGCGCGCCTCT---------TGCTGGACGCGACAC
CGCAAGGTAACTGGCTAGACATTTCTCCTCTCCCTCTGAACATATCTGAGAGCAAAATACCTGTTTTTTCTTTTGTCTAC
TGGGAGAGATTAAAAATATACGTACTAGTCAATAGCGAGTAACAGTATT-------------------------------
---TTATGAGCTTATCTCGAAGATGCGCGCCACCCCGCTGCATTCTGTTTAGTCAACTAAAAG--------ACATCATGT
GCTAGAGCTTAACTTCTCAGAGATCATCAGGAGTCTGGAAATGGAGCATTATTGTTTTTGCCTGCATCACTGCATGGGAC
TGTGAAAGTATGGATAGAACAAACTCACACCAGAAATTGGGACCAGATAGTCTAGTAAGTATAACTGAAAAGTGAGATCT
GATCAGTAGTTACACAAGTT------------------------------------------------------------
----------------------------------------------------------------------AATAGCAAGT
ACTAGCTTTTCTTGGCTGTAAAAATAATAATTTTGCCATTCCAAAAGTCTATATGCAAAGTTTCTTATACAGAGGCACTA
AGTTGAAATCCTATTCCTACTGATTACTTA---CTGTCAAGCGTCTTCTATGTGTCTTTTTCTTCAGTTGGGATTGTATG
ATGATTTGACTAACCATTTCGAAAACATTTCTTATGTGAACCAGAGAAATGCCGCTTGAGGATACCCTCAGGTATCAAAT
TCAGGTCCAAAGAGAACTGTGTGAACAGCTTGAGGTTAGACAAGCTCTGCATCACTGCTTATACTCCTAAACTCTGTATC
AT---GTAG---GTTAAAAATGCTTATATATATATATATATATCTACGATCAGGTGCAGAAGAAGCTGCAGATGCGAATA
GAGGCCCAAGGGAGGTATTTAAAGGAAATACTAGAGAAGGCTCAGGAAAACATTTCCTTTGATGCAAATGGATCTGCTGG
CCTAGAAAATACCGGATCACAGCTGACGGACTTTAACCTGGCTCTTCCGGGCTTGTCGGAGAATGGAACACAGGTGTATG
AAGAAAGCAGTGAACAGTTGGTGAAACATATGTCTGATGACAATCTTCATGATAATAATTTGGATTTTCAGCTCTACCGT
GTACGAAGTCAGGAGGCTAAGAGTGTCAAATGCACCCCAAAAACTGAGGACCTGCTCCTCTTAGACTTGAATATAAAAGG
AGGATATGACCTGTCTTCGAGAGGAATGCAAGGGTGAGTT-AAATCTGAAGATTAACCAGGAGAGGAAATAGAGATGTGT
TTCAGCATGCTGACAGTTTTGGGGAGTTTCACTGTTTGCTATTAGAATTTGTTT-CCCCGTGGCAGTGCTTAGAATGCTT
GGTAACAAGTTTGAATTCCTCTGTGATAATGTTAAATTTGCTGAAGAAATTCATGAACGCTTGAAGCCTGGTAGTATATG
CATCAGGGCCGTTCCTGATATTTCGGGGGCCCAGGGCGAAATTACAACCCAGGGCCCCTACTATAAAGATAAAAATAATA
ATATCATTTCTTTTTAGATTCATTCCTTTATCTAACTTATTATTGTCTATTGTTCCAAAATAAAACAAAATTGTAAATAG
TGTATGTTAAACATCATCATGTCAGTCACG-----------ATGACT---TGTGTCACGT---------AGCTTCGGCAG
GAGGTAGTTAGGAGATAGTTTAGATTCTCCCTAAA-CCGCATGTACTTATCTCTATCTCTTATCTCTTTCTTGCTCCTCA
AGATGTAATCTCTCCAAACTACTTGTATGCATATCCAGGGATAAGCCCCTGACTATATAACACGCAGGCGCGACCCCGAT
CAGGGGACGACGCTTCACGCCTTTCGCACATGGTATATAGAGCCCCTTTTCTTCATCACGTCTAGTTCGCTAAGGTTTTT
-T-TCCTACCACCAAAGCTCGCCGCCATGTCCTCCTCTTCTGCGGCCAACTCCAACCTCTCCGGTCAAGTTACCGAGAAG
CTACCCCGCACCAACTATGTTCTCTGGCGCACCCAGATAACCCCGCAGATCAGAGGAGCCGGCTTCTTCGGATACGTGGA
TGGAACCACACCGGAGCCGGCCAAGCACGTCGTCACCAAGTACAAGGATGGGAAAGAAGAAACGATTCCCAATCCCCTCC
ACTCGGTTTGGATCCGAGAAGATCAACAGGTATTAGGCTATCTGTTGAACAATCTGACAAAAGAAGTACTAGTGCAGGTC
ACATCTATCGATCATGCACATGAGC
>chr2B_1
GCCGCCGCTAGGGTACCGGCGCCGGGGTCGGCATTGACCGCGACGGCCCATCGCACGGTGTAGGAGGAGCAC-AATGGCT
CCTCCACGAGCGCCCGGCGACGGCCGAGCAAGGTTGTCGCGGCCTCGCGCCCTTCGGTCGCTGGAAGGACGACGATGATG
ACACGACGGTGTGGCCGGACAG----------GGCGGCCACGCGTAGAAGGTCGTCGTCTGCTACAACTTAGCCTGCTAG
G---TTTTTTTGAACAATCGAAATATCATCTGTTTTGTGTAAATTATGTTCAAACTATGCTGAAATCCGACGTGTTTGAC
AAGATTTGTCCGATTTGTTTAATTTTATTTTGAAATGC-----------GTTGGATGCCTGGCTCTCGCTTCACTTTCCG
CGAACTGA-TCTCATCGGTCCGTAGGCAGATAAGGTGTCCTAGGGCACG----ACGTTGGAGATGCCATGAGTGGTGAGC
GGCAGTGTATGCCAAATATGTATGGGATGTGCTACG------TACAAGGCATGTGTGCAGCGTCATATCCTACGTACCTA
CTACGTACGCAGCCACAGACCACAGTAGGTTACCGTCGGCGCCTCGGCGGCGTCGTGCTGGATCGACCGTCACAGTTGGT
TGGGCGTGTCGTGTCGCCGTCGCCGAGATGCTCGGCGTCGTCCATCGGCTTGTCGTCTTGTTTCTTGTGGCGTCTGCGTG
CGCTGCACCCACTAGCCACAGCCGGGCCGAGCGGGCCGAGTAGATTCCGTTCCGCGCACAGACACATGACATGATGCC--
-----CCCCTCCCCTCCTCCCGCGCCACCATCTCCGCTAACTCCTCTCGTCGTCTTGCGCTCCGGATCGAACATCTCT--
GCCTCCCGTCTCCTTGTCCTCGCGTAGCCTTCGCACTTGCGCAACGTATCTTTTCTCCCAGCACCACCACCTCAGTCAGC
AAGACCGCGTTATATGATACTACTAGTAAGGGAGGAGCTCAGCTTGCTTGATCTTGCAAGGACAGGGGAGCAGCCGATCG
GGTCAAGATGTTTGAAGGGATGGAGGGGATGAGCTACGGCGGAGG---------------------TGCTGCTGGGGCTG
GGGCTGGGGCGGCGGCGCTGTCGCGGGATCCA---AAGCAGCGGTTGCGGTGGACGCCGGACCTCCACGACCGCTTCGTG
CACGCCGTCGCCAGGCTCGGCGGCCCCGACAGTGA---GTCCTCTTTA-TTGCTCCTTCCTTCCCCTGC-------TCGT
CACGCCACAGTGCAACGCCGGCGATCATGTGCCTGATCAAA----------------------CTTTGCTTCTTTTGACC
ATC-----------------------------------AGCTTAACTATA--------------CTGATCATTATTGTTG
CCT----G--CAACAGAAGCGACGCCAAAGGGAGTGCTCAGGCTGATGGCCATGAAAGGCCTCACTCTGTACCACCTGAA
AAGCCACCTTCAGGTT------T--TGCTCAACAACTGTGCACCAGTC-CTGCTCTTCGCTCATATCTCTC-----CTCT
TCTCTTTTGCAGTCCAGTCCAGTGCTGTACTACGTATGCTTACTAATTA--ACAGCGATGTTTGTTTTAT---CTTATCA
GAAATACAGGCTGGGAAAGCACACCAAGAAATCCACAGACCTGGAATTAGCCAACAATGGAGGTACA------CACATA-
--CACCTTGCAACTGCCACAGCCAACGCCAAAATGCAGTCAAGCCAACGTTTCCCCATCTAAACTCCAACCTTGCTATCT
TTGTTTTTACCAGAGTTTACCTCGCAAGACATCAGCTTCCAAATCGGTGCGCCTCTGGTTGTTCCTGCTGGACGCGACAC
CGCAAGGTAACTGGCTAGACATTTCTCCTCTCCCTCTGGACCTATCTGCAAGCAAAATACCTGTT-TTTTTTTTGTCTAC
CAGGATAGGTTAAAAATATT-------GTCAATAGCCAATAACAGTATA-------------------------------
---TTATGAGTTTACCTCGAAGATGCGCGCCATCCCGCTGCATTCTGTTTAGTCAACTAAAAG--------GCATCATGT
GCTAGAGC-TAACTTCTCAGAGATCATCAGGAATCTAGAAATGGAGCATTATTGTTTTTGC--------CTGCATGGGAC
TGTGAAAGTATGGATAGAACAAACACGAACCAGAAATTGGGACTGGATAGTCTAGTA----TAACTGAAAAGTGAGATCT
GATCAGTACTTGTACAAGTTAGGCCCTGTTTGGAGTCACTCCAACTCCTAAAAATACGAGGAGCTGGAGCATCTCTTTCC
CAGCTCCGTGCCTTTTGACTCCAGCTCCGGGAGCGGAGTGGTGGAGTGGCGGGTCTCCGAACAGGGCCTTAATAGCAAGT
ACTAGCTTTTCTTGGCTCTAAAAATAATAAC-TTGCCATTCCAAAAGTATATATGTAAAGTTTCATATACAGAGGCACCA
AGATGAAATCCTACTCCTACTGATTACTTATTACTGTCATGCGTCTTCTATGTGTCCTTTTCTTCGATTGAGATTGTATG
ATGATTTAACTAACCATTTCCAAAACATTTCTTGTGTGAATCAGAGAAATGCCGCTTGAGGATACCCTCAGGTATCAAAT
TCAGGTCCAAAGAGAACTGTGCGAACAACTTGAGGTTAGACAAGTTCTGCATCACTGCTTATACTCCCAAACTCTGTACC
ATGGCGTAG---GTTAAAAATGCTTATATATAT----------CTGCGATCAGGTGCAGAAGAAGCTACAGATGCGAATA
GAGGCCCAAGGGAGGTATTTAAAGGAAATACTAGAGAAAGCTCAGGAAAACATTTCCTTTGATGCAAATGGATCTGCTGG
CCTAGAAAATACCAGATCACAGCTCACGGATTTCAACCTAGCTCTTCCGGGTCTCACGGAGAATGGAAGACAGGTGTATG
AAGAAAGCGGTGAACAGTTGGTGAAAGATATGTCTGATGACAATCTTCATGATAATAACTTGGATTTTCAGCTCTACCGT
GTACGAAGTCAGGAGGCTAAGAGTGTCAAATGCACCCCGAAAACTGAGGACCTGCTCTTATTAGACTTGAATATAAAAGG
AGGATATGACCTGTCTTCGAGAGGAATGCAAGGGTGAGTT-AAATCTGAAGATTAACCAGCAGAGGAAATAGAGATATGT
TTCAGCATGCTGACAGTTTTTGGGAGTTTCACTATTTTCTGTTAGAATTTGTTT-CCT-GTGGCAGTGCTTAGGATGCTT
GGTCACAAGTTTGACTTACTCTGTGGTTATGTTAAATTTGCTGAAGAAATTCATGAACGCTTGAAGCCTG-TAGTATATG
CAT-----------------------------------------------------------------------------
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>chr2D_237
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----------------------------------------------------------------------------TTTT
AGATTTTAGTTGAACGGTCGAAATATCACCCGTTTTATATAAAATATGTCCAAACTATGATGAAATCCATCGTATTTGAT
AAAATTTGTCTGATTATTTCAGTTTTATTTCGCAATGTATACAGACACGGTTGGATGGTCGGCTCCCACATCACTTTTCA
CCAACTGA-TTTTACCGGTCCACAGACAAATACGCTCCCCGTTT-AGGAATCAACGTTGGAGATGCCATGAGTGGTGAGC
GGTAACGGATGCCAAATATGTATGGGATGTGCTACG------TACGAGGCATGTGTGCAGCGTCACACACTACGTACCTA
CTACGTACGCAGCCACAGACCACAGTCGGTTACCGTCGGCGGCGT-----CGTCGTGCTGGATCGACCGTCACAGTTGGT
TGGGCGTGGCGTGTCGCCGTCGCCGAGATGCCCGGCGTCGTCGACCGGCTTGTCGTTTTGTTTCTTGTGGCGTCTGCGTG
CGCTGCACCCACTAGCCACAGCCGGGCCGAGCGGCCCAAGTAGATTCCGTTCCGCGC----ACACATGACATGATGCC--
-----CCCTC--------CTCGCGCCACCATCTCCGCCACCTCCTCCCGTCGTCTTGCGCTCCGGATCGAACATCTCTCC
GCCTCCCGTCTCCTTGTCCTCGCGTAGGCTTCGCACTTGCACAACGTATCTTTCTTTCCAGCCCTCGCCGCAGTTATATG
CCACTCCAGTTAGCAAGCGA-------------GGAGCTCGTCTTGCTCGATCTCGCAAGGGCT---GAACAGCCGTTTG
GATCGAGATGTTTGAAGGGATGGAGGGGATGAGCTACGGCGGCGG---------------------TGCTGCTGGCGCTG
GTGCCGGGGCGGCGGCGCTGTCGCCGCGGGACCCCAAGCAGCGGCTGCGGTGGACGCCGGACCTCCACGACCGCTTCGTG
CACGCCGTCGCCAGGCTCGGCGGCCCCGACAGTGAGTAGTCTTCTTCGTTTGCTCCTCCTCCCCCCTGC-------TCGT
CACGCCACAGTGCAACGCCGGCGATCATGTGCCTGATTCGTCAGCTCACTCTCAGCTGACT---TTTGCTTC-TTTGAGT
ATC-----------------------------------AGCTTAACTATA--------------CTGATTATTATTGTTG
CCTGCCCG--CAACAGAGGCGACGCCAAAGGGAGTGCTCAGGCTGATGGCCATGAAAGGCCTCACTCTGTACCACCTGAA
AAGCCACCTTCAGGTT------T--TGCTCAACAACTCTGCACCACCCGCTGCTGTTTGACTGTT--TCTT-----ACCT
TCTCTTCTGCACTCCAGTTCAGTGTTGCAG----------CACTAACAAACACAGCGATGCTTGTTTTATCTCCTTATTA
GAAATACAGGCTGGGAAAGCAAAGCAAGAAATCCACAGACCTGGAATTAGCCAACAGTGGAGGTACATAAACACACACA-
--TACCTTGCAACTGTTACAGTCAACACAAAGATGCAGTCAAGCAAAAGTCT---CTCCTAAACTGAAAACTTGCTATCT
TTGTTTTCATCAGATTTTACCACGCAGGACATCAACTTCCAAATCGGTGCGCCTCTTGTCGTTCCTGCTGAACGCGACAC
CGGAAGGTAACTAGCTCGACCTTTCTCCTCTCCCTCTGGATCTATCTGCGAGCAAAGTACCTGTT-TTTTTTTTGTCTAC
CACAATAGGTTAAAAATATT-------GTCAATGGCGACTAACAGTATATTATGTTTTTTAGAAGAACTAACAGTATATT
ATGTTATGAGTTTACCTCGAAGATGTGCGCCGTTCCACTGCATTTTGTTTAATCAACTAAAAACTGCTAAAGCATCATGT
G-TAGAGC-TGACCTCTCAGCAATCATCAGGCATCTAGAAATCAACAATAATTATTTTTGCCTGCAC---------GGAC
TGTAAGTGTATGGATGAAACAGACTCAAACCAGGTATTGGTACCAGACAGTCAAGTA----TGACTGAGAAGTGAGATCT
GATTAGTTGTTGCACATGTT------------------------------------------------------------
----------------------------------------------------------------------AATAACAAGT
GTTAGCTTTTCTTAGAACTAATTATTTT-ATTTTAGCCTTCCAAAGATATATATGCAAAGTTCCTTATATGTGCACATAC
ATGGAATT--------CTACTGATTAC---TTACCGTCATGCGTCTTCCATGTGTCTTTTTCTTCGGTTGAGATTGTATG
ATGATTTAACTAACCATTTCGAAAACATTTCTTATGTGAATCAGAGAAATACCGCTTGAGGACACCCTCAGGTATCAAAT
TCAGGTCCAAAGAGAACTGTGCGAACAGCTTGAGGTTAGACAAGTTCTGCATCACTGCTTATACTCCCAAACTCTGTACC
AT---GTCGTACGTTAAAACTGCT--------------TATATCTGCAATCAGGTGCAGAAGAAGCTACAGATGCGAATA
GAGGCCCAAGGGAGGTACTTAAAGGAAATACTAGAGAAAGCTCAGGAAAACATTTCCTTTGATGCAAATGGGTCTGTTGG
CCTAGAGAACACCAGATCACAGCTCACGGACTTCAACCTAGCTCTTCCGGGCTTGTCGGACAATGGAACACAGGTGTATG
AAGAAAGCGGTGAACAGTTGGTGAAACATATGTCTGATGACAATCTTCATGATAATAATTTGGATTTTCAGCTCTACCGT
GTACGAAGTCAGGAGGCTAAGAGTGTCGAATGCACCCCGAAAACTGAGGACCTCCTCCTATTAGACTTGAATATAAAAGG
AGGATATGACCTGTCTTCGAGAGGAATGCAAGGGTGAGTCAAAATCTGAAGATTAACCAGCAGAGGAAATAGAGATATAT
TTCAGCAAGCTGACAGTTTTTGGGAGTTTCACTGTTTGCTATTAGAATTTGTTTGCCT-GTGGCAGTGCTTAGGATGCTT
GGTCACAAGTTTGACTTGCTCTGTGGTAATGTTAAATTTGCTGAAGAAATTCATGAACGCTTGAAGCCTG-TAGTATATG
CAT-----------------------------------------------------------------------------
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>chr6A_942
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--------------AAGCGA-------------GGAGCTCATCTTGCTCGATCTTGCAAGGGCT---GAACAGCCGTTTG
GATCGAGATGTTTGAAGGGATGGAGGGGATGAGCTACGGCGGCGG---------------------TGCTGCTGGCGCTG
GTGTCGGGGCGGCGGCGCTGTCGCCGCGGGACCCCAAGCAGCGGCTGCGGTAGACGCCGGACCTCCACGACCGCTTCGTG
CACGCCGTCGCCAGGCTCGGCGGCCCCGACAGTGAGTAGTCTTCTTCATTTGCTCCTCCTTTCCCCTGC-------TCGT
CAAGCCACAGAGCAACGCCGACGATCATGTGCCTCATTCATCAGCTCACTCTCAGCTGACT---TTTGCTTG-TTTGAGC
ATC-----------------------------------AGCTTAACTATA--------------CTGATTATTATTGTTT
CCTGC------AATAGAAGCGACGCCAAAGGGAGTGCTCAGGCTGATGGCCATGAAAGGCCTGACTCTGTACCACCTGAA
AAGCTACCTTCAGGTT------T--TTCTAAACAACTCTGCACCACCC-CTGCTGTTTGACTGTT--TCTT-----ACCT
TCTCTTCTGCACTCCAGTTCAGTGTTGCAG----------CACTAACTAACACAGCGATGCTTGTTTTAT---CTTACCA
GAAATACAGGTTGGGAAAACACAACAAGAAATCCACAGACCTGGAATTAGCCAACAGTGGAGGTACATAAACACATACA-
--TACCTTGCAACTGTTACAGTCAGCACAAAGATGCAGTC----------------------------------------
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>chr1D_1145
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-----------------------------------------------------------------------CGCTTCGTG
CACGCCGTCGCCAGGCTCGGCGGCCCCGACAGTG---AGTCCTCTTCATTTGCTCCTTTGTTCCCCTGC-------TCGT
CACGCCACAGTGCAACGCCGGCGATCATG-GCCTGATCCATCAGCTCACTCTCAGGCAGCTGCCTTTGCTTC-CTTGGGC
ATGGATGAGCTTAATTAACTGTTAGTTGAGCATGGATGAGCTTAATTAACTGTTCCTTTCCAATCTGATTATGTTAATTT
CTACCTGCAACAACAGAGGCGACGCCCAAGGCAGTGCTCGGGCTGATGGCCATGAAAGGCCTCACTCTGTACCACCTGAA
AAGCCACCTTCATTCAGGTTTGT--TGTTCAACAACTCTGCTCCACTC-CTGTTCTTCGCTCATATCTCTT-----CCCT
TCCCTTTTGCAGTCCAGTCCAGTGTTGTACTACGTATACTTACTAATTAACACTGCGATGTTTGTTTTAT---CCTATCA
GAAATACAGGCTGGGAAAGCACACCAAGAAATCCACGGACCTGGAATTAGCCAACAGTGGAGGTACA------CACATA-
--CACCTTGCAACTGCTACAG-----------------------------------------------------------
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>chr6A_3286
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----TGTTAAACATCATTATGTCAGTCACG-----------ATGACT---TGTATCACGT---------AGCTTTGGCAG
GAGGTAGTTAGAAGATAGTTTAGATTCTTTTTAAA-CCGCATGTACTTATCTCTATCTTTTATCTCTTTCTTGCTCCTCA
AGATGTAATCTCTCCAAACTACTTGTATGCATATGCAGGGATAAGCCCCTGACTATATAACACGCAGGCGCGACCCCGAT
CAGGGTACGACGCTTCACGCCTTTCGCACATGGTATACAGAGCCCCTTTTCTTCATCACGTCTAGTTCGCTAGGGTTTTT
-T-TCCTACCACCAAAGCTCGCCGCCATGTCCTCCTCTGCCGCAGCCAACACCAACCTCTCCGGTCAAGTTACCGAGAAG
CTATCCCGCACCAACTATGTTCTCTGGCGCACCCAGATAACCCCGCAGATCAGAGGAGCCGACTTCTTTGGATACGTGGA
TGGAACCACACCGGAGCCGGCCAAGCACGTCGTCACCAAGGACAAGGATGGGAAAGAATAAATGATTCCCAATCCCCTCC
ACTCGGTTTGGATCCGAGAAGATCAACAGGTATTAGGCTATCTGTTGAACAATCTGACAAAAGAAGTACTAGTGCAGGTC
ACATCTATCGATCATGCACATGAGC
>chr4A_3286
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----TGTTAAACATCATCATGT----CACG-----------ATGACT---TGTGTCGCGTAGCTCACGTAGCTTCGACAG
GAGGTAGTTAGGAGATAGTTTAGATTCTCTCTAAA-CCGCATGTACTTATCTCTATCTCTTATCTCTTCCTTGCTCCTCA
AGATGTAATCTCTCCAAACTACTTGTATGCATATCCAGGGATAAGCCCATGTCTATATAACACGCAGGCGCGACCCCGAT
CAGGGTACGACGCTTCTCGCCTTTCGCACATGGTATACAGAGCCCCTTTTCTTCATCACGTCTAGTTCGCTAGGG---TT
-T-TCCTACCACCAAAGCTCGCCGCCATGTCCTCCTCTGCCGCAGCCAACTCCAACCTCTCCGGTCAAGTTACCGAGAGG
CTATCCTGCACCAACTATGTTCTCTGGCGCACCCAGATAACCCCGCAGATCAGAGGAGCCGGCTTCTTCGGATACGTGGA
TGGAACCACACCGGAGCCGGCCAAGCACGTCGTCACCAAGGACAAGGATGGGAAAGAAGAGACGATTCCAAATCCCCTCC
ACTCGGTTTGGATCTGAGAAGATCAACAGGTATTGGGCTATCTATTGAACAATCTGACAAAAGAAGTACTAGTGCAAGTC
ACATCCATCGATCATGCACATGAGC
>chr5A_3286
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----TGTTAAACATCATCATGT----CACTCGTCATGTCACATGACT---TGTGTCACGT---------AGCTTCGGCAG
GAGGTAATTAGGAGATAGTTTATATTGTCTCTAAAACCACATGTACTTATCTCTATCTCTTATCTCTTCCTTGCTCCTCA
AGATGTAATCTCTCCAAACTACTTGTATGCATATCCAGGGATAAGCCCCTGTCTATATAACACGCAGGCGCGACCCCGAT
CAGGGTACGACGCTTCACGCCTTTCGAACATGGTATACAGAGCCCCTTTTCTTCATCACGTCTAGTTCGCTAGGG---TT
-TCTCCTACCACCAAAGCTCGCCACCATGTCCTCCTCTACCGCAGCCTACTCCAACCTCTCCGGTCAAGTCACAGAGAGG
CTATCCCGCACCAATTATGTTCTCTGGCGCACCCAGATAACCCCGCAGATCAGAGGAGCCGGCTTCTTTGGATACGTCGA
TGGAACCACACCAGAGCCGGCCAAGCACGTCGTCACCAAGGACAAGGATGGGAAAGAAGAAACGATTCCCAATCCTCTCC
ACTCGGTTTGGATCCGAGAAGATCAACTGGTATTGGGCTATCTGTTGAACAATCTCACAAAAGAAGTACTTGTGCAGGTC
ACCTCCATCGATCATGCACATGAGC
>chr3D_3303
--------------------------------------------------------------------------------
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----------------TCATGT----CACG-----------ATGACT---TGTGTCACGT---------AGCTTCGGCAG
GAGGTAGTTAGGAGATAGTTTAGATTCTCTCTAAA-CCGCATGTACTTATCTCTATCTCTTATCTCTTCCTTG-TCCTCA
AGATGTAATCTCTCCAAACTACTTGTATGCATATCCAGGGATAAGCCCCTGTCTATATAACACGCAGGCGCGACCCCGAT
CAGGGTACGACGCTTCACGCCTTTCGCACATGGTATACAGAGCCCCTTTTCGTCATCACGTCTAGTTCGCTAGGG---TT
-T-TCCTACCACCAAAGCTCGCCGCCATGTCCTCCTCTGCCGCAGCCAACTCCAACCTCTCCGGTCAAGTTACCGAGAGG
CTATCCCGCACCAACTATGTTCTCTGGCGCACCCAGATAACCCCGCAGATCAGAGGAGCCGGCTTCTTCGGATACGTGGA
TGGAACCACACCGGAGCCGGCCAAGCACGTCGTCACCAAGGACAAGGATGGGAAAGAAGAGACGATTCCCAATCCCCTCC
ACTCGGTTTGGATCCGAGAAGATCAATAGGTATTGGGCTATCAGTTGAACAATCTGACAAA-GAAGTACTAGTGCAGGTC
ACATCCATCGATCATGCACATGAGC
>chr6B_3303
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----------------TCATGT----CACG-----------ATGATA---T--GCCACGTAG--------GCTTCAGCAG
GAGATAGTTAGGAGATAGTTTAGATTCTGTCTAAA-CCGAATGTACTTATCTCTATCTCTTATTCCTTCCTTGCCTCCCA
AGATGTAATCTCT-CCAACTACTTGTATGCATATCCAGGGATAAGCCCCTGTCTATATAACATGAAGGCGCAGCCCCGAA
TAGGGTACGACGCTTCAAGCCTATCGCAGATGGTATACAGAGCCCCTCTTTTCCATTACATCTAGTTTGCTAGG----TT
-T-TCCTACCACCAAAGCTCACCGCCATGTCCTCCTCTGCCGCAGCCAACTCCAACCTCTCGGGCCAGGTTACCGAGAGG
CTATCCTGCACCAACTACGTCCTCTGGCGCACCCAGATTACTCCGCAGATCAGAGGAGCCGGCTTCTTCGAATACGTGGA
TGGAACCACACCAGAGCCGGCCAAGCATGTCGTCACCAAGGACAAGGATGGGAAAGAAGAGACGATTCCCAATCCTCTCC
ACTCTGTTTGGATCCGAGAATATCAACATGTATTGGGCTATTTGTTGAACAATCTGACCAAAGAAGTACTAGTGCAGGTC
ACCTCCATTGATCATGCACATGAGC
>chr7B_3303
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----------------TCATGT----CACG-----------ATGGCA---TAGGTCACGTAG--------GCTTCGGTAC
AGGATAGTTAGGAGATAGTTTAGATTCTCTCCAAA-CCGGATGTGTTTATCTCTATCTCTTATTCTTTCCTTGCCTTCCA
AGATGTAATCTCT-CCAACTACTTGTATGCTTATCCAGGGATAAGCCCCTGC-TATATAACACGAAGGCGCAGCCCCGAA
CAGGGTACGACGCTTCCTGCCTATCGCACATGGTATACAGAGCCCCCTTT-TCCATTACATCTAGTTCGCTAGG---TTT
-T-TCCTTCCACCAAAGCTCGCCGCCATGTCCTCCTCTGCCGCAGCCAACTCCAACCTCTCGGGCCAGGTCACCGAGAGG
CTATCCCGCACAAACTATATCCTCTGGCGCACCCAAATCACCCCGCAGATCAGAGGAGCCGGCTTCTTCGGATACGTGGA
TGGAACCACGCCAGAGCCGGCCAAGCACGTCGTCACCAAGGACAAGGATGGGAAAGAAGAAACAATCCCCAATCCTCTCC
ACTCGGTTTGGATCCGAGAAGATCAACAGGTATTGGGCTATCTGTTGAACAACCTGACCAAAGAAGTACTAGTGTAGGTC
ACCTCCATCAATCATGCGCATGAGC
>chr1B_3303
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----------------TCATGT----CACG-----------ATGGCA---TAGGTCACGTAG--------GCTTCGACAG
AAGATTGTTAGGAGATAGTTTAGATTCTCTCTAAA-CCGAATGTATTAATCTCTATCTCTTATTCTTTCCTTGCCTTCCA
AGATGTAATCTCT-CCAACTACTTGTATGCATATCCAGGGATAAGCCCCTGC-TATATAACACGAAGGCGCAGCCCCGAA
CAGGGTACGACGCTTCCAGCCTATCGCACATGGTATACAGAGCCCCTCTTTTCCATTACATCTAGTTCGCTAGG----TT
GT-TCCTTCCACCAAAGCTCGCCGCCATGTCCTCCTCTGCCGCAGCCAACTCCAACCTCTCGGGCCAGGTCACCGAGAGG
CTATACCGCACAAACTACGTCCTCTAGCGCATCCAAATCACCCCGCAGATCAGAGGAGCCGGCTTCTTCGGATACGTGGA
TGGAACCACGCCAGAGCCGGCCAAGCACGTCGTCACCAAGGACAAGGATGGGAAAGAAGAAACAATTCCCAATCCTCTCC
ACTCGGTTTGGATCCGAGAAGATCAACAGGTATTGGGCTATCTGTTGAACAATCTGACCAAAGAAGCACTAGTGCAGGTC
ACCTCCATTGATCATGCGCATGAGC
>chr1B_3303
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----------------TCATGT----CACG-----------ATGACA---TAGGTCACGTAG--------GCTTCGGCAG
GAGATAGTTAGGAGATAGTTTAGATTCTCTCTAAA-CCGAATGTACTTATCTCTATCTCTTATTCTTTCCTTGCCTTCCA
AGATGTAATCTCT-CCAACTACTTGTATGCATATCCAGGGATAAGCCCCTGACTATATAACACGAAGGCGCAACCCCGAA
CAGGGTACGGCGCTTCAAGCCTATCGCACATGGTATACAGAGCACCTCTTTTCCATTACATCTAGTTCGCTAGG----TT
-T-TCCTTCCACCAATTCTCACCGCCATGTCCTCCTCTGCCGCAGCCAACTCCAACCTCTTGGGCCAGGTCTCCGAGAGG
CTATCCCGCACCAACTACATCCTCTGGCGCACCCAAATTACCCCGCAGATCAGAGGAGCCAGCTTCTTCGGATACGTGGA
TGGAACCACGCCAGAGCTGGCCAAGCACGTCGTCACCAAGAACAAGAATGGGAAAGAAGAAACAATTCCCAATCCTCTCC
ACTCGGTTTGGATCCGAGAGGATCAACAGGTATTGGGCTATCTATTAAACAATCTGACCAAAGAAGTACTAGTGCAGATC
ACCTCCATTGATCATGTGCATGAGC
>chr3B_3306
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------------------------GTCACG-----------ATGGACTTGT--GTCACGTAG--------AGTTCGGTAG
GAGGTAGCTAGGAGATAGTTGAGATTCTCTCTAAA-CCGCATGTACTTATCTCTATCTCTTATTTCTTCCTTGCTACTCA
AGATGTAAGCTCTCCCAACTACTTGTATGCATATCCAGGGATAAGCCCCTGCCTATATAACACGCAGGCGCGACCCCGAT
CAGGGTACGACGCTTCACGCCTT-CGCACATGGTAC-CAGAGCCCCTTTTCTTCATCACGTCTAGTTCGCTAGT----TT
CCTCC--ACCACCAAAGCTCGCCGCCATGTCCTCCTCTGCCGCAGCCAACTCTAACCTCTCCGGTCAAGTCACCGAGAGG
CTATCCCGCACCAACTATGTTCTCTGGCATACCCAGATAACCCCGCAGATCAGAGGAGCCGGCTTCTTCGGATACGTGGA
TGGAACCACACCGGAGCCGGCCAAGCACGTCGTCACCAAGGATAAGGATGGGAAAGAAGAGACGATTCCCAATCCTCTCC
ATTCGGTTTGGATCCGAGAAGATCAACAGGTATTGGGCTATCTGTTGAACAATCTGACAAAAGAAGTACTAGTGCAGGTC
ACCTCCATCGATCATGCACATGAGC
>SNPs
-------------S----SSS--SS---SS------SS----S---S-SSS-S-----SSS-----S-SSSSS-------
------S---S---S----S------S------SS--S-S-------------S---S--S-----S--S-----S----
S--SSSSS-SSSSSSSS-SSSSSSSSSSSSSS------S---S---SS-----------S-------S----S--S----
--S---S------S----S-------SS---S---------------S-------------------S------------
-----S--------S-S---------------------S-S--S-S-S----S---S--------SS-----------SS
--S-----S--------------S---S--S------------SS------------S----------------------
---S--S----------------------------SSSSSSS-----------------------------------S--
SS----------------SSSSSSSS------------------------------------------------------
--------------------------------------------------------------------------------
------------S-----------------------------------------------------------------SS
SSSSS------------------------------------S--------------------------------------
S-------------------------------S---------------S-------------------------------
-----S----------S--S--S------------------S---------------S--S----------S--------
---------------------------------------------SSSSSSSSSSSSSSSSSSSSS--S------S----
-----------------------S--------------------------------------------------------
---------------------------------------------------------------------SSSSSSS----
--------------------------------------------------S---------------S-------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------S-----------------------
-----------------------SS----------------------------------------------SSSSS----
-------------------------S----SSSSSS-------S-------------S----------------------
----------------------------------------------S--------------------------------S
SS-------------------------------------------------------------------S-----S----
---S-------------------------------------------S--------------------------------
--------------------------------------S--S------S----------------S---S----------
SS---S--S----------SSSSSSSS-----------S---------S-------------------------------
----------S---S-----------------S--------------------------------------S--------
--------S-----------------------S---S-----------------------------SSS-----------
---------------------------S-----------------------------SSSS-------------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S------------------------------S-----------------------------S-
--S----------S-------------------------S-------------------------S----S---------
-------S--------------------------------S---------------------------------------
---------------------S----------------------S----------------------S----------S-
---------------------------------SSSSS-------S---------------------S------------
--------------------------------------S-----------------------------------------
-------------S----------S--------S-----S----------------------------------------
--------S-----------------------------------------------------------------------
--------------------------------------S--------------------S--------------------
------------------------------------------------------------S---------------S---
--------------------S------------------------------------SS--------------S------
---S----------S--S-------S--------------------------------------------S---------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS----------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
-----S-------------------------------S----------------------------------S-------
--------------------------------------S-S--S------------------------------------
---S----------------------------------------------------------------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
-------------------------
>forward_1021
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--------------------------------------------------------------------------------
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-----------------------------------------CCTTGCTTGATCTTGCGAGC-------------------
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-------------------------
>reverse_2974
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-------------GGATCACAGCTGACGGACTT-----------------------------------------------
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-------------------------
>forward_1844
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----------------------------------------------------------------TCCAAGCTTGCCATCT
TTGC----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>reverse_4004
--------------------------------------------------------------------------------
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---CCCCGCACCAACTATGTTCT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
