Multiple sequence alignment - TraesCS2A01G440900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G440900 chr2A 100.000 3592 0 0 1 3592 691186759 691183168 0.000000e+00 6634.0
1 TraesCS2A01G440900 chr2A 88.612 922 68 20 975 1881 691216899 691216000 0.000000e+00 1086.0
2 TraesCS2A01G440900 chr2A 93.175 337 22 1 2258 2593 691215810 691215474 8.960000e-136 494.0
3 TraesCS2A01G440900 chr2A 88.530 279 23 5 1885 2163 641966321 641966590 2.670000e-86 329.0
4 TraesCS2A01G440900 chr2A 79.739 153 24 7 577 727 709582036 709581889 1.760000e-18 104.0
5 TraesCS2A01G440900 chr2B 90.086 1402 101 21 486 1867 654323301 654324684 0.000000e+00 1784.0
6 TraesCS2A01G440900 chr2B 90.215 930 56 18 977 1881 654355160 654356079 0.000000e+00 1181.0
7 TraesCS2A01G440900 chr2B 87.589 701 51 18 2157 2834 654356068 654356755 0.000000e+00 780.0
8 TraesCS2A01G440900 chr2B 87.261 628 54 18 2169 2787 654324827 654325437 0.000000e+00 693.0
9 TraesCS2A01G440900 chr2B 91.913 507 24 5 3088 3592 654357016 654357507 0.000000e+00 693.0
10 TraesCS2A01G440900 chr2B 94.372 231 13 0 3145 3375 654352723 654352953 4.410000e-94 355.0
11 TraesCS2A01G440900 chr2B 89.474 285 16 5 2834 3114 654352454 654352728 7.380000e-92 348.0
12 TraesCS2A01G440900 chr2B 89.247 279 21 3 1885 2163 93904178 93903909 1.240000e-89 340.0
13 TraesCS2A01G440900 chr2B 88.929 280 19 8 1885 2163 458090529 458090797 5.750000e-88 335.0
14 TraesCS2A01G440900 chr2B 86.780 295 30 5 1876 2170 589980274 589980559 1.610000e-83 320.0
15 TraesCS2A01G440900 chr2B 87.413 286 27 5 1878 2163 712896062 712896338 1.610000e-83 320.0
16 TraesCS2A01G440900 chr2B 88.889 243 22 3 234 473 654323008 654323248 9.750000e-76 294.0
17 TraesCS2A01G440900 chr2B 88.384 198 14 5 2850 3047 654356831 654357019 2.790000e-56 230.0
18 TraesCS2A01G440900 chr2B 79.935 309 50 10 2281 2586 787486154 787485855 2.170000e-52 217.0
19 TraesCS2A01G440900 chr2B 79.935 309 50 10 2281 2586 787537943 787537644 2.170000e-52 217.0
20 TraesCS2A01G440900 chr2D 90.576 1337 84 23 565 1881 547760362 547761676 0.000000e+00 1733.0
21 TraesCS2A01G440900 chr2D 90.652 920 47 18 979 1881 547694487 547695384 0.000000e+00 1186.0
22 TraesCS2A01G440900 chr2D 87.037 702 54 16 2162 2834 547761672 547762365 0.000000e+00 758.0
23 TraesCS2A01G440900 chr2D 88.020 601 45 16 2258 2834 547695600 547696197 0.000000e+00 686.0
24 TraesCS2A01G440900 chr2D 86.571 350 16 4 3062 3408 547762428 547762749 1.230000e-94 357.0
25 TraesCS2A01G440900 chr2D 94.372 231 13 0 3145 3375 547696498 547696728 4.410000e-94 355.0
26 TraesCS2A01G440900 chr2D 92.889 225 15 1 234 457 547759686 547759910 3.460000e-85 326.0
27 TraesCS2A01G440900 chr2D 91.589 214 10 1 2863 3076 547696271 547696476 4.540000e-74 289.0
28 TraesCS2A01G440900 chr2D 95.139 144 4 2 3450 3592 547762751 547762892 1.300000e-54 224.0
29 TraesCS2A01G440900 chr2D 74.274 482 91 26 237 712 83832248 83831794 4.770000e-39 172.0
30 TraesCS2A01G440900 chr2D 92.857 56 4 0 486 541 547760306 547760361 8.270000e-12 82.4
31 TraesCS2A01G440900 chr4A 88.929 280 22 4 1887 2166 506279960 506279690 1.600000e-88 337.0
32 TraesCS2A01G440900 chr4A 72.984 496 98 17 237 712 75246744 75246265 1.340000e-29 141.0
33 TraesCS2A01G440900 chr1B 88.889 279 22 3 1885 2163 510295111 510294842 5.750000e-88 335.0
34 TraesCS2A01G440900 chr1A 88.889 279 22 6 1885 2163 329183719 329183450 5.750000e-88 335.0
35 TraesCS2A01G440900 chr4B 88.172 279 24 4 1885 2163 115414420 115414689 1.240000e-84 324.0
36 TraesCS2A01G440900 chr4B 79.812 213 35 8 273 481 417552850 417552642 8.040000e-32 148.0
37 TraesCS2A01G440900 chr1D 76.082 485 98 14 233 710 372552846 372553319 1.670000e-58 237.0
38 TraesCS2A01G440900 chr1D 73.859 482 111 13 234 710 372524300 372524771 1.020000e-40 178.0
39 TraesCS2A01G440900 chr7D 75.319 470 69 29 273 717 34316917 34316470 7.920000e-42 182.0
40 TraesCS2A01G440900 chr7D 90.698 43 2 2 766 808 159413408 159413448 5.010000e-04 56.5
41 TraesCS2A01G440900 chr5A 75.126 398 66 23 305 683 42115594 42115977 4.800000e-34 156.0
42 TraesCS2A01G440900 chr5A 73.763 465 82 26 271 713 46000214 46000660 2.890000e-31 147.0
43 TraesCS2A01G440900 chr5D 79.717 212 38 4 237 448 315620509 315620303 8.040000e-32 148.0
44 TraesCS2A01G440900 chr5D 75.000 336 61 10 234 548 449278432 449278765 2.250000e-27 134.0
45 TraesCS2A01G440900 chr7A 74.384 406 74 20 248 637 209156107 209156498 2.890000e-31 147.0
46 TraesCS2A01G440900 chr7A 77.406 239 45 7 237 473 127373251 127373020 2.250000e-27 134.0
47 TraesCS2A01G440900 chr7B 76.860 242 43 13 237 475 221322622 221322853 1.350000e-24 124.0
48 TraesCS2A01G440900 chr3B 76.349 241 46 11 237 475 561045797 561046028 6.300000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G440900 chr2A 691183168 691186759 3591 True 6634.000000 6634 100.000000 1 3592 1 chr2A.!!$R1 3591
1 TraesCS2A01G440900 chr2A 691215474 691216899 1425 True 790.000000 1086 90.893500 975 2593 2 chr2A.!!$R3 1618
2 TraesCS2A01G440900 chr2B 654323008 654325437 2429 False 923.666667 1784 88.745333 234 2787 3 chr2B.!!$F4 2553
3 TraesCS2A01G440900 chr2B 654352454 654357507 5053 False 597.833333 1181 90.324500 977 3592 6 chr2B.!!$F5 2615
4 TraesCS2A01G440900 chr2D 547694487 547696728 2241 False 629.000000 1186 91.158250 979 3375 4 chr2D.!!$F1 2396
5 TraesCS2A01G440900 chr2D 547759686 547762892 3206 False 580.066667 1733 90.844833 234 3592 6 chr2D.!!$F2 3358


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
662 1033 0.039618 GGGGATTTGAGTTGGCCTGA 59.960 55.0 3.32 0.0 0.0 3.86 F
1932 3713 0.034283 TCATGCATGCCAACTAGCCA 60.034 50.0 22.25 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2161 3942 0.030638 CGCTCACTTGTTTTGTGGGG 59.969 55.0 0.0 0.0 36.49 4.96 R
2969 5040 0.250234 CATGAGGGCGAAGAGGAACA 59.750 55.0 0.0 0.0 0.00 3.18 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.866883 TTCAAAGGATCCAAATTCGCC 57.133 42.857 15.82 0.00 0.00 5.54
23 24 2.801483 TCAAAGGATCCAAATTCGCCA 58.199 42.857 15.82 0.00 0.00 5.69
24 25 2.754552 TCAAAGGATCCAAATTCGCCAG 59.245 45.455 15.82 0.00 0.00 4.85
25 26 1.767759 AAGGATCCAAATTCGCCAGG 58.232 50.000 15.82 0.00 0.00 4.45
26 27 0.106519 AGGATCCAAATTCGCCAGGG 60.107 55.000 15.82 0.00 0.00 4.45
30 31 3.562176 GGATCCAAATTCGCCAGGGATAT 60.562 47.826 6.95 0.00 38.43 1.63
32 33 2.174639 TCCAAATTCGCCAGGGATATGT 59.825 45.455 0.00 0.00 0.00 2.29
33 34 3.392947 TCCAAATTCGCCAGGGATATGTA 59.607 43.478 0.00 0.00 0.00 2.29
34 35 4.141287 CCAAATTCGCCAGGGATATGTAA 58.859 43.478 0.00 0.00 0.00 2.41
35 36 4.766891 CCAAATTCGCCAGGGATATGTAAT 59.233 41.667 0.00 0.00 0.00 1.89
36 37 5.943416 CCAAATTCGCCAGGGATATGTAATA 59.057 40.000 0.00 0.00 0.00 0.98
38 39 7.122650 CCAAATTCGCCAGGGATATGTAATAAT 59.877 37.037 0.00 0.00 29.06 1.28
39 40 8.522830 CAAATTCGCCAGGGATATGTAATAATT 58.477 33.333 0.00 0.00 29.06 1.40
41 42 9.920946 AATTCGCCAGGGATATGTAATAATTAT 57.079 29.630 0.00 0.00 29.06 1.28
69 70 9.533253 AAATTTGGTACTTCATTCAAAAGTCTG 57.467 29.630 0.00 0.00 38.00 3.51
70 71 7.873719 TTTGGTACTTCATTCAAAAGTCTGA 57.126 32.000 0.00 0.00 38.00 3.27
71 72 7.873719 TTGGTACTTCATTCAAAAGTCTGAA 57.126 32.000 0.00 0.00 39.56 3.02
74 75 8.567948 TGGTACTTCATTCAAAAGTCTGAATTC 58.432 33.333 0.00 0.00 42.16 2.17
75 76 7.746475 GGTACTTCATTCAAAAGTCTGAATTCG 59.254 37.037 0.04 0.00 42.16 3.34
76 77 6.672147 ACTTCATTCAAAAGTCTGAATTCGG 58.328 36.000 8.06 8.06 42.16 4.30
77 78 5.627499 TCATTCAAAAGTCTGAATTCGGG 57.373 39.130 14.33 3.33 42.16 5.14
78 79 5.312895 TCATTCAAAAGTCTGAATTCGGGA 58.687 37.500 14.33 5.70 42.16 5.14
79 80 5.412594 TCATTCAAAAGTCTGAATTCGGGAG 59.587 40.000 14.33 0.00 42.16 4.30
81 82 2.749621 CAAAAGTCTGAATTCGGGAGGG 59.250 50.000 14.33 0.00 0.00 4.30
82 83 1.952621 AAGTCTGAATTCGGGAGGGA 58.047 50.000 14.33 0.00 0.00 4.20
83 84 1.196012 AGTCTGAATTCGGGAGGGAC 58.804 55.000 14.33 4.83 0.00 4.46
84 85 0.902531 GTCTGAATTCGGGAGGGACA 59.097 55.000 14.33 0.00 0.00 4.02
85 86 1.486726 GTCTGAATTCGGGAGGGACAT 59.513 52.381 14.33 0.00 0.00 3.06
86 87 1.486310 TCTGAATTCGGGAGGGACATG 59.514 52.381 14.33 0.00 0.00 3.21
88 89 2.434336 CTGAATTCGGGAGGGACATGTA 59.566 50.000 6.36 0.00 0.00 2.29
89 90 3.045634 TGAATTCGGGAGGGACATGTAT 58.954 45.455 0.00 0.00 0.00 2.29
90 91 3.458118 TGAATTCGGGAGGGACATGTATT 59.542 43.478 0.00 0.00 0.00 1.89
92 93 5.131308 TGAATTCGGGAGGGACATGTATTAA 59.869 40.000 0.00 0.00 0.00 1.40
95 96 6.750660 TTCGGGAGGGACATGTATTAATTA 57.249 37.500 0.00 0.00 0.00 1.40
96 97 6.750660 TCGGGAGGGACATGTATTAATTAA 57.249 37.500 0.00 0.00 0.00 1.40
98 99 8.438618 TCGGGAGGGACATGTATTAATTAATA 57.561 34.615 12.90 12.90 0.00 0.98
99 100 8.882282 TCGGGAGGGACATGTATTAATTAATAA 58.118 33.333 17.49 9.88 30.64 1.40
147 148 9.751542 AAACGGACAATATATTTCAACAAACAA 57.248 25.926 0.00 0.00 0.00 2.83
148 149 9.921637 AACGGACAATATATTTCAACAAACAAT 57.078 25.926 0.00 0.00 0.00 2.71
160 161 9.926158 ATTTCAACAAACAATATCAATGCTACA 57.074 25.926 0.00 0.00 0.00 2.74
166 167 7.760794 ACAAACAATATCAATGCTACATTGGTG 59.239 33.333 17.64 13.29 32.20 4.17
167 168 5.835257 ACAATATCAATGCTACATTGGTGC 58.165 37.500 17.64 0.00 32.20 5.01
168 169 5.595542 ACAATATCAATGCTACATTGGTGCT 59.404 36.000 17.64 3.36 32.20 4.40
169 170 5.954296 ATATCAATGCTACATTGGTGCTC 57.046 39.130 17.64 0.00 0.00 4.26
170 171 2.009051 TCAATGCTACATTGGTGCTCG 58.991 47.619 17.64 0.00 0.00 5.03
171 172 2.009051 CAATGCTACATTGGTGCTCGA 58.991 47.619 11.59 0.00 0.00 4.04
172 173 1.945387 ATGCTACATTGGTGCTCGAG 58.055 50.000 8.45 8.45 0.00 4.04
174 175 0.175760 GCTACATTGGTGCTCGAGGA 59.824 55.000 15.58 9.02 0.00 3.71
175 176 1.405526 GCTACATTGGTGCTCGAGGAA 60.406 52.381 15.58 0.00 0.00 3.36
176 177 2.271800 CTACATTGGTGCTCGAGGAAC 58.728 52.381 16.00 16.00 0.00 3.62
180 181 0.468226 TTGGTGCTCGAGGAACTTGT 59.532 50.000 23.14 0.00 41.55 3.16
181 182 0.468226 TGGTGCTCGAGGAACTTGTT 59.532 50.000 23.14 0.00 41.55 2.83
182 183 1.134220 TGGTGCTCGAGGAACTTGTTT 60.134 47.619 23.14 0.00 41.55 2.83
183 184 1.264288 GGTGCTCGAGGAACTTGTTTG 59.736 52.381 15.56 0.00 41.55 2.93
186 187 1.531578 GCTCGAGGAACTTGTTTGTCC 59.468 52.381 15.58 0.00 41.55 4.02
187 188 2.807108 GCTCGAGGAACTTGTTTGTCCT 60.807 50.000 15.58 0.00 41.55 3.85
189 190 4.238514 CTCGAGGAACTTGTTTGTCCTAG 58.761 47.826 3.91 0.00 41.55 3.02
190 191 2.737252 CGAGGAACTTGTTTGTCCTAGC 59.263 50.000 0.00 0.00 41.55 3.42
192 193 4.321750 CGAGGAACTTGTTTGTCCTAGCTA 60.322 45.833 0.00 0.00 41.55 3.32
193 194 5.624738 CGAGGAACTTGTTTGTCCTAGCTAT 60.625 44.000 0.00 0.00 41.55 2.97
194 195 6.128138 AGGAACTTGTTTGTCCTAGCTATT 57.872 37.500 0.00 0.00 27.25 1.73
195 196 5.940470 AGGAACTTGTTTGTCCTAGCTATTG 59.060 40.000 0.00 0.00 27.25 1.90
196 197 5.938125 GGAACTTGTTTGTCCTAGCTATTGA 59.062 40.000 0.00 0.00 0.00 2.57
198 199 5.246307 ACTTGTTTGTCCTAGCTATTGACC 58.754 41.667 16.64 6.34 0.00 4.02
199 200 4.216411 TGTTTGTCCTAGCTATTGACCC 57.784 45.455 16.64 8.53 0.00 4.46
202 203 5.222048 TGTTTGTCCTAGCTATTGACCCTTT 60.222 40.000 16.64 0.00 0.00 3.11
203 204 4.487714 TGTCCTAGCTATTGACCCTTTG 57.512 45.455 16.64 0.00 0.00 2.77
205 206 3.454812 GTCCTAGCTATTGACCCTTTGGA 59.545 47.826 10.89 0.67 34.81 3.53
206 207 4.103311 GTCCTAGCTATTGACCCTTTGGAT 59.897 45.833 10.89 0.00 34.81 3.41
208 209 3.584733 AGCTATTGACCCTTTGGATCC 57.415 47.619 4.20 4.20 34.81 3.36
209 210 2.175715 AGCTATTGACCCTTTGGATCCC 59.824 50.000 9.90 0.00 34.81 3.85
211 212 0.258774 ATTGACCCTTTGGATCCCGG 59.741 55.000 9.90 7.07 34.81 5.73
212 213 2.124278 GACCCTTTGGATCCCGGC 60.124 66.667 9.90 0.00 34.81 6.13
213 214 2.614013 ACCCTTTGGATCCCGGCT 60.614 61.111 9.90 0.00 34.81 5.52
215 216 1.148498 CCCTTTGGATCCCGGCTAC 59.852 63.158 9.90 0.00 0.00 3.58
216 217 1.632018 CCCTTTGGATCCCGGCTACA 61.632 60.000 9.90 0.00 0.00 2.74
217 218 0.254747 CCTTTGGATCCCGGCTACAA 59.745 55.000 9.90 0.00 0.00 2.41
218 219 1.133792 CCTTTGGATCCCGGCTACAAT 60.134 52.381 9.90 0.00 0.00 2.71
219 220 2.654863 CTTTGGATCCCGGCTACAATT 58.345 47.619 9.90 0.00 0.00 2.32
221 222 2.818751 TGGATCCCGGCTACAATTTT 57.181 45.000 9.90 0.00 0.00 1.82
226 227 1.631388 TCCCGGCTACAATTTTCAGGA 59.369 47.619 0.00 0.00 0.00 3.86
227 228 2.241176 TCCCGGCTACAATTTTCAGGAT 59.759 45.455 0.00 0.00 0.00 3.24
228 229 2.618709 CCCGGCTACAATTTTCAGGATC 59.381 50.000 0.00 0.00 0.00 3.36
229 230 2.618709 CCGGCTACAATTTTCAGGATCC 59.381 50.000 2.48 2.48 0.00 3.36
231 232 3.313526 CGGCTACAATTTTCAGGATCCTG 59.686 47.826 32.60 32.60 44.86 3.86
243 244 0.743097 GGATCCTGAAAGCATGCACC 59.257 55.000 21.98 8.72 0.00 5.01
282 283 2.308690 CCCCTAGAGTTCCTTCCTACG 58.691 57.143 0.00 0.00 0.00 3.51
430 432 3.687102 CACCTGTCGGGCGTGGTA 61.687 66.667 0.00 0.00 39.10 3.25
535 906 2.696707 GGGTTGTGGACGTCCTATGATA 59.303 50.000 33.39 11.17 36.82 2.15
541 912 2.176148 TGGACGTCCTATGATACCTGGA 59.824 50.000 33.39 7.24 36.82 3.86
561 932 2.279517 GCGGCCGGAGATGTACAG 60.280 66.667 29.38 0.00 0.00 2.74
563 934 2.109181 GGCCGGAGATGTACAGCC 59.891 66.667 5.05 6.65 0.00 4.85
614 985 1.610522 GCAAAGCAAGAGGAAAGCAGA 59.389 47.619 0.00 0.00 0.00 4.26
640 1011 4.261801 GGATTGGAAGAAAAGTGGATCGA 58.738 43.478 0.00 0.00 0.00 3.59
655 1026 2.436173 GGATCGAGAGGGGATTTGAGTT 59.564 50.000 0.00 0.00 0.00 3.01
662 1033 0.039618 GGGGATTTGAGTTGGCCTGA 59.960 55.000 3.32 0.00 0.00 3.86
717 1088 2.304831 GGCAAAGCCCCTCTCTCCT 61.305 63.158 0.00 0.00 44.06 3.69
727 1098 2.307098 CCCCTCTCTCCTCACAAATTGT 59.693 50.000 0.00 0.00 0.00 2.71
770 1141 3.244146 TGTTTGATGGCAAAATGGGTCTG 60.244 43.478 0.00 0.00 44.91 3.51
962 1343 6.183361 ACCACACCAGTATTACTCAAACTCTT 60.183 38.462 0.00 0.00 0.00 2.85
966 1347 9.305555 ACACCAGTATTACTCAAACTCTTAGTA 57.694 33.333 0.00 0.00 0.00 1.82
1270 3001 1.548719 CTGTGGATGTGGACGTTCCTA 59.451 52.381 4.92 0.00 37.46 2.94
1276 3007 2.601067 TGGACGTTCCTACCGCCA 60.601 61.111 0.00 0.00 37.46 5.69
1329 3078 2.657237 CCGGTGTCTCGCCTTCTT 59.343 61.111 0.00 0.00 0.00 2.52
1435 3187 4.097361 GGTTCCAGAGGGACGGCC 62.097 72.222 0.00 0.00 44.89 6.13
1443 3201 4.741239 AGGGACGGCCAGGGTGAT 62.741 66.667 11.00 0.00 35.15 3.06
1444 3202 4.176752 GGGACGGCCAGGGTGATC 62.177 72.222 11.00 0.00 35.15 2.92
1673 3437 2.361104 GGCCTTCCCGCATGTCAA 60.361 61.111 0.00 0.00 0.00 3.18
1715 3482 1.144969 CATGTTGTACAAGGCGTCGT 58.855 50.000 8.98 0.00 0.00 4.34
1716 3483 1.126113 CATGTTGTACAAGGCGTCGTC 59.874 52.381 8.98 0.00 0.00 4.20
1846 3627 7.241042 ACAGTAGTAAGAAAGGCACATTCTA 57.759 36.000 1.45 0.00 46.22 2.10
1847 3628 7.324178 ACAGTAGTAAGAAAGGCACATTCTAG 58.676 38.462 1.45 0.00 46.22 2.43
1848 3629 6.256757 CAGTAGTAAGAAAGGCACATTCTAGC 59.743 42.308 1.45 0.00 46.22 3.42
1849 3630 5.165961 AGTAAGAAAGGCACATTCTAGCA 57.834 39.130 1.45 0.00 46.22 3.49
1872 3653 4.186159 ACTTCCCGTTCACATTTATACCG 58.814 43.478 0.00 0.00 0.00 4.02
1882 3663 7.569408 CGTTCACATTTATACCGATTCCTCATG 60.569 40.741 0.00 0.00 0.00 3.07
1883 3664 6.826668 TCACATTTATACCGATTCCTCATGT 58.173 36.000 0.00 0.00 0.00 3.21
1885 3666 7.226523 TCACATTTATACCGATTCCTCATGTTG 59.773 37.037 0.00 0.00 0.00 3.33
1886 3667 6.486657 ACATTTATACCGATTCCTCATGTTGG 59.513 38.462 0.00 0.00 0.00 3.77
1887 3668 5.623956 TTATACCGATTCCTCATGTTGGT 57.376 39.130 7.23 3.11 0.00 3.67
1888 3669 2.403252 ACCGATTCCTCATGTTGGTC 57.597 50.000 7.23 0.00 0.00 4.02
1891 3672 2.159156 CCGATTCCTCATGTTGGTCGTA 60.159 50.000 14.19 1.42 0.00 3.43
1892 3673 3.517602 CGATTCCTCATGTTGGTCGTAA 58.482 45.455 7.23 0.00 0.00 3.18
1893 3674 4.119862 CGATTCCTCATGTTGGTCGTAAT 58.880 43.478 7.23 1.42 0.00 1.89
1894 3675 5.286438 CGATTCCTCATGTTGGTCGTAATA 58.714 41.667 7.23 0.00 0.00 0.98
1895 3676 5.751509 CGATTCCTCATGTTGGTCGTAATAA 59.248 40.000 7.23 0.00 0.00 1.40
1896 3677 6.423905 CGATTCCTCATGTTGGTCGTAATAAT 59.576 38.462 7.23 0.04 0.00 1.28
1897 3678 7.597369 CGATTCCTCATGTTGGTCGTAATAATA 59.403 37.037 7.23 0.00 0.00 0.98
1898 3679 8.833231 ATTCCTCATGTTGGTCGTAATAATAG 57.167 34.615 7.23 0.00 0.00 1.73
1899 3680 7.356089 TCCTCATGTTGGTCGTAATAATAGT 57.644 36.000 7.23 0.00 0.00 2.12
1900 3681 8.467963 TCCTCATGTTGGTCGTAATAATAGTA 57.532 34.615 7.23 0.00 0.00 1.82
1901 3682 9.085645 TCCTCATGTTGGTCGTAATAATAGTAT 57.914 33.333 7.23 0.00 0.00 2.12
1903 3684 9.908152 CTCATGTTGGTCGTAATAATAGTATCA 57.092 33.333 0.00 0.00 0.00 2.15
1907 3688 9.850628 TGTTGGTCGTAATAATAGTATCATAGC 57.149 33.333 0.00 0.00 0.00 2.97
1922 3703 8.604640 AGTATCATAGCTAATATCATGCATGC 57.395 34.615 22.25 11.82 0.00 4.06
1923 3704 6.879276 ATCATAGCTAATATCATGCATGCC 57.121 37.500 22.25 3.99 0.00 4.40
1924 3705 5.747342 TCATAGCTAATATCATGCATGCCA 58.253 37.500 22.25 11.89 0.00 4.92
1925 3706 6.181908 TCATAGCTAATATCATGCATGCCAA 58.818 36.000 22.25 9.67 0.00 4.52
1926 3707 4.778534 AGCTAATATCATGCATGCCAAC 57.221 40.909 22.25 7.20 0.00 3.77
1927 3708 4.404640 AGCTAATATCATGCATGCCAACT 58.595 39.130 22.25 9.28 0.00 3.16
1928 3709 5.563592 AGCTAATATCATGCATGCCAACTA 58.436 37.500 22.25 3.72 0.00 2.24
1929 3710 5.646793 AGCTAATATCATGCATGCCAACTAG 59.353 40.000 22.25 16.89 0.00 2.57
1930 3711 4.778534 AATATCATGCATGCCAACTAGC 57.221 40.909 22.25 0.00 0.00 3.42
1931 3712 1.325355 ATCATGCATGCCAACTAGCC 58.675 50.000 22.25 0.00 0.00 3.93
1932 3713 0.034283 TCATGCATGCCAACTAGCCA 60.034 50.000 22.25 0.00 0.00 4.75
1933 3714 0.818938 CATGCATGCCAACTAGCCAA 59.181 50.000 14.93 0.00 0.00 4.52
1934 3715 1.411246 CATGCATGCCAACTAGCCAAT 59.589 47.619 14.93 0.00 0.00 3.16
1935 3716 1.559368 TGCATGCCAACTAGCCAATT 58.441 45.000 16.68 0.00 0.00 2.32
1936 3717 1.901159 TGCATGCCAACTAGCCAATTT 59.099 42.857 16.68 0.00 0.00 1.82
1937 3718 2.302445 TGCATGCCAACTAGCCAATTTT 59.698 40.909 16.68 0.00 0.00 1.82
1938 3719 2.674357 GCATGCCAACTAGCCAATTTTG 59.326 45.455 6.36 0.00 0.00 2.44
1939 3720 3.617045 GCATGCCAACTAGCCAATTTTGA 60.617 43.478 6.36 0.00 0.00 2.69
1940 3721 4.761975 CATGCCAACTAGCCAATTTTGAT 58.238 39.130 0.00 0.00 0.00 2.57
1941 3722 5.681954 GCATGCCAACTAGCCAATTTTGATA 60.682 40.000 6.36 0.00 0.00 2.15
1942 3723 5.991933 TGCCAACTAGCCAATTTTGATAA 57.008 34.783 0.00 0.00 0.00 1.75
1943 3724 5.964758 TGCCAACTAGCCAATTTTGATAAG 58.035 37.500 0.00 0.00 0.00 1.73
1944 3725 5.714333 TGCCAACTAGCCAATTTTGATAAGA 59.286 36.000 0.00 0.00 0.00 2.10
1945 3726 6.380846 TGCCAACTAGCCAATTTTGATAAGAT 59.619 34.615 0.00 0.00 0.00 2.40
1946 3727 7.559533 TGCCAACTAGCCAATTTTGATAAGATA 59.440 33.333 0.00 0.00 0.00 1.98
1947 3728 8.579863 GCCAACTAGCCAATTTTGATAAGATAT 58.420 33.333 0.00 0.00 0.00 1.63
1980 3761 9.981460 ATTAAATGAAGAAATAGAGGGTTGAGT 57.019 29.630 0.00 0.00 0.00 3.41
1983 3764 9.620259 AAATGAAGAAATAGAGGGTTGAGTATC 57.380 33.333 0.00 0.00 0.00 2.24
2038 3819 9.506018 AAATGCTATATTACTATGTGTCATGCA 57.494 29.630 0.00 0.00 0.00 3.96
2039 3820 9.676861 AATGCTATATTACTATGTGTCATGCAT 57.323 29.630 0.00 0.00 36.63 3.96
2040 3821 8.483307 TGCTATATTACTATGTGTCATGCATG 57.517 34.615 21.07 21.07 0.00 4.06
2041 3822 7.550196 TGCTATATTACTATGTGTCATGCATGG 59.450 37.037 25.97 10.76 0.00 3.66
2042 3823 6.748333 ATATTACTATGTGTCATGCATGGC 57.252 37.500 24.40 24.40 0.00 4.40
2043 3824 2.423446 ACTATGTGTCATGCATGGCA 57.577 45.000 29.45 29.45 44.86 4.92
2044 3825 2.725637 ACTATGTGTCATGCATGGCAA 58.274 42.857 34.01 23.37 44.94 4.52
2045 3826 3.293337 ACTATGTGTCATGCATGGCAAT 58.707 40.909 34.01 27.34 44.94 3.56
2046 3827 2.595124 ATGTGTCATGCATGGCAATG 57.405 45.000 34.01 5.91 44.94 2.82
2047 3828 1.546961 TGTGTCATGCATGGCAATGA 58.453 45.000 34.01 18.64 44.94 2.57
2048 3829 1.893801 TGTGTCATGCATGGCAATGAA 59.106 42.857 34.01 17.67 44.94 2.57
2049 3830 2.299297 TGTGTCATGCATGGCAATGAAA 59.701 40.909 34.01 15.28 44.94 2.69
2050 3831 3.055747 TGTGTCATGCATGGCAATGAAAT 60.056 39.130 34.01 0.00 44.94 2.17
2051 3832 4.159879 TGTGTCATGCATGGCAATGAAATA 59.840 37.500 34.01 7.61 44.94 1.40
2052 3833 5.163395 TGTGTCATGCATGGCAATGAAATAT 60.163 36.000 34.01 0.00 44.94 1.28
2053 3834 6.040616 TGTGTCATGCATGGCAATGAAATATA 59.959 34.615 34.01 6.03 44.94 0.86
2054 3835 6.924612 GTGTCATGCATGGCAATGAAATATAA 59.075 34.615 34.01 5.47 44.94 0.98
2055 3836 7.601130 GTGTCATGCATGGCAATGAAATATAAT 59.399 33.333 34.01 0.00 44.94 1.28
2056 3837 8.804204 TGTCATGCATGGCAATGAAATATAATA 58.196 29.630 30.82 2.65 43.62 0.98
2057 3838 9.811995 GTCATGCATGGCAATGAAATATAATAT 57.188 29.630 26.04 0.00 43.62 1.28
2099 3880 7.468141 TGATACTATGCATTCGGAAGATAGT 57.532 36.000 3.54 17.20 41.60 2.12
2100 3881 8.575649 TGATACTATGCATTCGGAAGATAGTA 57.424 34.615 19.16 19.16 41.60 1.82
2101 3882 9.190317 TGATACTATGCATTCGGAAGATAGTAT 57.810 33.333 23.48 23.48 42.26 2.12
2102 3883 9.672086 GATACTATGCATTCGGAAGATAGTATC 57.328 37.037 27.13 27.13 44.59 2.24
2103 3884 6.556212 ACTATGCATTCGGAAGATAGTATCG 58.444 40.000 3.54 0.00 41.60 2.92
2104 3885 4.848562 TGCATTCGGAAGATAGTATCGT 57.151 40.909 4.48 1.13 41.60 3.73
2105 3886 5.952526 TGCATTCGGAAGATAGTATCGTA 57.047 39.130 4.48 0.00 41.60 3.43
2106 3887 5.696822 TGCATTCGGAAGATAGTATCGTAC 58.303 41.667 4.48 1.42 41.60 3.67
2107 3888 5.239963 TGCATTCGGAAGATAGTATCGTACA 59.760 40.000 8.75 0.00 41.60 2.90
2108 3889 5.568296 GCATTCGGAAGATAGTATCGTACAC 59.432 44.000 8.75 0.00 41.60 2.90
2109 3890 6.568081 GCATTCGGAAGATAGTATCGTACACT 60.568 42.308 8.75 0.00 41.60 3.55
2110 3891 7.360691 GCATTCGGAAGATAGTATCGTACACTA 60.361 40.741 8.75 0.00 41.60 2.74
2111 3892 8.501580 CATTCGGAAGATAGTATCGTACACTAA 58.498 37.037 8.75 1.09 41.60 2.24
2112 3893 8.613060 TTCGGAAGATAGTATCGTACACTAAT 57.387 34.615 8.75 0.00 41.60 1.73
2113 3894 9.710900 TTCGGAAGATAGTATCGTACACTAATA 57.289 33.333 8.75 0.00 41.60 0.98
2114 3895 9.881649 TCGGAAGATAGTATCGTACACTAATAT 57.118 33.333 8.75 0.00 32.47 1.28
2161 3942 7.723324 TGATAGTACTTCCTATTACAACCAGC 58.277 38.462 0.00 0.00 0.00 4.85
2162 3943 5.354842 AGTACTTCCTATTACAACCAGCC 57.645 43.478 0.00 0.00 0.00 4.85
2163 3944 3.646736 ACTTCCTATTACAACCAGCCC 57.353 47.619 0.00 0.00 0.00 5.19
2164 3945 2.241430 ACTTCCTATTACAACCAGCCCC 59.759 50.000 0.00 0.00 0.00 5.80
2182 4083 0.594796 CCACAAAACAAGTGAGCGCC 60.595 55.000 2.29 0.00 39.30 6.53
2321 4277 1.880340 CTGGAGCGACGAGGATTGC 60.880 63.158 0.00 0.00 0.00 3.56
2411 4373 2.679059 CGATGCTGTTGTTGGATCTCCT 60.679 50.000 0.00 0.00 36.82 3.69
2433 4395 3.717707 TCACACTCACAGCAAGTACTTC 58.282 45.455 4.77 1.12 0.00 3.01
2471 4433 6.887545 TGATGGATATGCAAATGATGATGCTA 59.112 34.615 0.00 0.00 42.97 3.49
2528 4490 5.738208 GCAAAAGATATTCATGGAAGCAGGG 60.738 44.000 0.00 0.00 0.00 4.45
2552 4514 7.255569 GGTTTAGTCATTACAAAATACAGCCC 58.744 38.462 0.00 0.00 0.00 5.19
2651 4646 9.226606 CCATTTATATATACTTTCCGCTTCCAA 57.773 33.333 0.00 0.00 0.00 3.53
2654 4649 4.772886 ATATACTTTCCGCTTCCAAGGT 57.227 40.909 0.00 0.00 0.00 3.50
2711 4712 4.229096 TCAAAAGATTCAAATGCGACAGC 58.771 39.130 0.00 0.00 45.41 4.40
2770 4772 2.478894 TCAAAAGTCCGAATTCGACAGC 59.521 45.455 28.76 14.53 43.02 4.40
2812 4823 6.202516 ACTTCATTCAAAAGAACGGACAAA 57.797 33.333 0.00 0.00 0.00 2.83
2843 4854 9.906660 TTTCAACAACAATATCATGTTTAGGAC 57.093 29.630 0.00 0.00 41.44 3.85
2844 4855 8.050778 TCAACAACAATATCATGTTTAGGACC 57.949 34.615 0.00 0.00 41.44 4.46
2845 4856 7.122055 TCAACAACAATATCATGTTTAGGACCC 59.878 37.037 0.00 0.00 41.44 4.46
2848 4859 6.575244 ACAATATCATGTTTAGGACCCTGA 57.425 37.500 0.00 0.00 0.00 3.86
2873 4944 6.790177 AGGTAGGACCATAAGACTAGAGAT 57.210 41.667 0.00 0.00 41.95 2.75
2880 4951 8.043710 AGGACCATAAGACTAGAGATGTTTTTG 58.956 37.037 0.00 0.00 0.00 2.44
2930 5001 7.496591 TCGTTTTAGTCACCATTACACTTTCTT 59.503 33.333 0.00 0.00 0.00 2.52
2963 5034 8.573885 CATATCCATTATTTTCATGCACACTCT 58.426 33.333 0.00 0.00 0.00 3.24
2964 5035 6.839124 TCCATTATTTTCATGCACACTCTT 57.161 33.333 0.00 0.00 0.00 2.85
2965 5036 7.936496 TCCATTATTTTCATGCACACTCTTA 57.064 32.000 0.00 0.00 0.00 2.10
2966 5037 8.523915 TCCATTATTTTCATGCACACTCTTAT 57.476 30.769 0.00 0.00 0.00 1.73
2967 5038 8.970020 TCCATTATTTTCATGCACACTCTTATT 58.030 29.630 0.00 0.00 0.00 1.40
3050 5121 0.821711 TGGACCTTTGTTTCTGGCCG 60.822 55.000 0.00 0.00 0.00 6.13
3055 5126 2.159382 CCTTTGTTTCTGGCCGTGTAT 58.841 47.619 0.00 0.00 0.00 2.29
3183 5257 3.916172 CGGTTTTCAGTTGATTGATGCAG 59.084 43.478 0.00 0.00 0.00 4.41
3241 5315 7.410120 AACTTTGAGAAGGTTGTGATCTTTT 57.590 32.000 0.00 0.00 37.19 2.27
3343 5417 7.550196 GGTACTCTTTCGTATAAATTTGGTCCA 59.450 37.037 0.00 0.00 0.00 4.02
3345 5419 7.813645 ACTCTTTCGTATAAATTTGGTCCAAC 58.186 34.615 2.98 0.00 0.00 3.77
3473 5547 2.352651 CAGGTAATCCAGTGCAACATCG 59.647 50.000 0.00 0.00 41.43 3.84
3489 5563 5.146460 CAACATCGGAACACTGTTGTTATG 58.854 41.667 12.00 2.87 46.43 1.90
3507 5581 6.121590 TGTTATGTCCAGTGCAACATCATAT 58.878 36.000 5.04 0.00 41.43 1.78
3509 5583 7.772757 TGTTATGTCCAGTGCAACATCATATAA 59.227 33.333 5.04 0.00 41.43 0.98
3512 5586 6.413892 TGTCCAGTGCAACATCATATAAAGA 58.586 36.000 0.00 0.00 41.43 2.52
3518 5592 9.655769 CAGTGCAACATCATATAAAGATACAAC 57.344 33.333 0.00 0.00 41.43 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.114794 GGCGAATTTGGATCCTTTGAATG 58.885 43.478 14.23 0.00 0.00 2.67
1 2 3.768757 TGGCGAATTTGGATCCTTTGAAT 59.231 39.130 14.23 5.47 0.00 2.57
4 5 2.159198 CCTGGCGAATTTGGATCCTTTG 60.159 50.000 14.23 4.21 0.00 2.77
5 6 2.102578 CCTGGCGAATTTGGATCCTTT 58.897 47.619 14.23 4.06 0.00 3.11
7 8 0.106519 CCCTGGCGAATTTGGATCCT 60.107 55.000 14.23 0.00 0.00 3.24
9 10 1.986882 ATCCCTGGCGAATTTGGATC 58.013 50.000 0.00 0.00 29.94 3.36
10 11 3.181429 ACATATCCCTGGCGAATTTGGAT 60.181 43.478 0.00 0.00 39.16 3.41
11 12 2.174639 ACATATCCCTGGCGAATTTGGA 59.825 45.455 0.00 0.00 0.00 3.53
13 14 5.964958 ATTACATATCCCTGGCGAATTTG 57.035 39.130 0.00 0.00 0.00 2.32
14 15 8.650143 AATTATTACATATCCCTGGCGAATTT 57.350 30.769 0.00 0.00 0.00 1.82
43 44 9.533253 CAGACTTTTGAATGAAGTACCAAATTT 57.467 29.630 0.00 0.00 37.46 1.82
44 45 8.912988 TCAGACTTTTGAATGAAGTACCAAATT 58.087 29.630 0.00 0.00 37.46 1.82
45 46 8.463930 TCAGACTTTTGAATGAAGTACCAAAT 57.536 30.769 0.00 0.00 37.46 2.32
48 49 8.463930 AATTCAGACTTTTGAATGAAGTACCA 57.536 30.769 2.35 0.00 44.74 3.25
49 50 7.746475 CGAATTCAGACTTTTGAATGAAGTACC 59.254 37.037 6.22 0.00 44.74 3.34
52 53 6.294176 CCCGAATTCAGACTTTTGAATGAAGT 60.294 38.462 6.22 0.00 44.74 3.01
53 54 6.072508 TCCCGAATTCAGACTTTTGAATGAAG 60.073 38.462 6.22 0.00 44.74 3.02
54 55 5.767665 TCCCGAATTCAGACTTTTGAATGAA 59.232 36.000 6.22 0.00 44.74 2.57
55 56 5.312895 TCCCGAATTCAGACTTTTGAATGA 58.687 37.500 6.22 0.00 44.74 2.57
56 57 5.392380 CCTCCCGAATTCAGACTTTTGAATG 60.392 44.000 6.22 0.00 44.74 2.67
58 59 4.072131 CCTCCCGAATTCAGACTTTTGAA 58.928 43.478 6.22 0.00 41.00 2.69
60 61 2.749621 CCCTCCCGAATTCAGACTTTTG 59.250 50.000 6.22 0.00 0.00 2.44
63 64 1.555533 GTCCCTCCCGAATTCAGACTT 59.444 52.381 6.22 0.00 0.00 3.01
65 66 0.902531 TGTCCCTCCCGAATTCAGAC 59.097 55.000 6.22 3.10 0.00 3.51
66 67 1.486310 CATGTCCCTCCCGAATTCAGA 59.514 52.381 6.22 0.62 0.00 3.27
67 68 1.210478 ACATGTCCCTCCCGAATTCAG 59.790 52.381 6.22 0.00 0.00 3.02
69 70 3.771577 ATACATGTCCCTCCCGAATTC 57.228 47.619 0.00 0.00 0.00 2.17
70 71 5.640158 TTAATACATGTCCCTCCCGAATT 57.360 39.130 0.00 0.00 0.00 2.17
71 72 5.843019 ATTAATACATGTCCCTCCCGAAT 57.157 39.130 0.00 0.00 0.00 3.34
74 75 9.509956 TTTATTAATTAATACATGTCCCTCCCG 57.490 33.333 15.92 0.00 0.00 5.14
120 121 9.751542 TGTTTGTTGAAATATATTGTCCGTTTT 57.248 25.926 0.00 0.00 0.00 2.43
122 123 9.921637 ATTGTTTGTTGAAATATATTGTCCGTT 57.078 25.926 0.00 0.00 0.00 4.44
134 135 9.926158 TGTAGCATTGATATTGTTTGTTGAAAT 57.074 25.926 0.00 0.00 0.00 2.17
136 137 9.926158 AATGTAGCATTGATATTGTTTGTTGAA 57.074 25.926 0.00 0.00 0.00 2.69
138 139 8.597227 CCAATGTAGCATTGATATTGTTTGTTG 58.403 33.333 19.69 0.00 0.00 3.33
139 140 8.313292 ACCAATGTAGCATTGATATTGTTTGTT 58.687 29.630 19.69 0.00 0.00 2.83
140 141 7.760794 CACCAATGTAGCATTGATATTGTTTGT 59.239 33.333 19.69 6.23 0.00 2.83
142 143 6.757947 GCACCAATGTAGCATTGATATTGTTT 59.242 34.615 19.69 0.00 0.00 2.83
143 144 6.097270 AGCACCAATGTAGCATTGATATTGTT 59.903 34.615 19.69 8.80 0.00 2.83
144 145 5.595542 AGCACCAATGTAGCATTGATATTGT 59.404 36.000 19.69 8.51 0.00 2.71
147 148 4.453478 CGAGCACCAATGTAGCATTGATAT 59.547 41.667 19.69 5.70 0.00 1.63
148 149 3.809279 CGAGCACCAATGTAGCATTGATA 59.191 43.478 19.69 0.00 0.00 2.15
149 150 2.615447 CGAGCACCAATGTAGCATTGAT 59.385 45.455 19.69 3.37 0.00 2.57
152 153 2.283298 CTCGAGCACCAATGTAGCATT 58.717 47.619 0.00 0.00 0.00 3.56
153 154 1.473965 CCTCGAGCACCAATGTAGCAT 60.474 52.381 6.99 0.00 0.00 3.79
154 155 0.108186 CCTCGAGCACCAATGTAGCA 60.108 55.000 6.99 0.00 0.00 3.49
155 156 0.175760 TCCTCGAGCACCAATGTAGC 59.824 55.000 6.99 0.00 0.00 3.58
156 157 2.093973 AGTTCCTCGAGCACCAATGTAG 60.094 50.000 6.99 0.00 0.00 2.74
157 158 1.899814 AGTTCCTCGAGCACCAATGTA 59.100 47.619 6.99 0.00 0.00 2.29
158 159 0.687354 AGTTCCTCGAGCACCAATGT 59.313 50.000 6.99 0.00 0.00 2.71
159 160 1.466167 CAAGTTCCTCGAGCACCAATG 59.534 52.381 6.99 2.38 0.00 2.82
160 161 1.072331 ACAAGTTCCTCGAGCACCAAT 59.928 47.619 6.99 0.00 0.00 3.16
166 167 1.531578 GGACAAACAAGTTCCTCGAGC 59.468 52.381 6.99 0.00 0.00 5.03
167 168 3.113260 AGGACAAACAAGTTCCTCGAG 57.887 47.619 5.13 5.13 0.00 4.04
168 169 3.554337 GCTAGGACAAACAAGTTCCTCGA 60.554 47.826 0.00 0.00 32.43 4.04
169 170 2.737252 GCTAGGACAAACAAGTTCCTCG 59.263 50.000 0.00 0.00 32.43 4.63
170 171 4.009370 AGCTAGGACAAACAAGTTCCTC 57.991 45.455 0.00 0.00 32.43 3.71
171 172 5.763876 ATAGCTAGGACAAACAAGTTCCT 57.236 39.130 0.00 0.00 34.79 3.36
172 173 5.938125 TCAATAGCTAGGACAAACAAGTTCC 59.062 40.000 0.00 0.00 0.00 3.62
174 175 5.705905 GGTCAATAGCTAGGACAAACAAGTT 59.294 40.000 22.57 0.00 33.26 2.66
175 176 5.246307 GGTCAATAGCTAGGACAAACAAGT 58.754 41.667 22.57 0.00 33.26 3.16
176 177 4.636206 GGGTCAATAGCTAGGACAAACAAG 59.364 45.833 22.57 0.00 33.26 3.16
177 178 4.288626 AGGGTCAATAGCTAGGACAAACAA 59.711 41.667 22.57 0.00 33.26 2.83
180 181 5.253330 CAAAGGGTCAATAGCTAGGACAAA 58.747 41.667 22.57 0.00 33.26 2.83
181 182 4.324254 CCAAAGGGTCAATAGCTAGGACAA 60.324 45.833 22.57 0.00 33.26 3.18
182 183 3.199946 CCAAAGGGTCAATAGCTAGGACA 59.800 47.826 22.57 0.00 33.26 4.02
183 184 3.454812 TCCAAAGGGTCAATAGCTAGGAC 59.545 47.826 16.25 16.25 34.93 3.85
186 187 4.505742 GGGATCCAAAGGGTCAATAGCTAG 60.506 50.000 15.23 0.00 34.93 3.42
187 188 3.394606 GGGATCCAAAGGGTCAATAGCTA 59.605 47.826 15.23 0.00 34.93 3.32
189 190 2.587522 GGGATCCAAAGGGTCAATAGC 58.412 52.381 15.23 0.00 34.93 2.97
190 191 2.487265 CCGGGATCCAAAGGGTCAATAG 60.487 54.545 15.23 0.00 34.93 1.73
192 193 0.258774 CCGGGATCCAAAGGGTCAAT 59.741 55.000 15.23 0.00 34.93 2.57
193 194 1.688811 CCGGGATCCAAAGGGTCAA 59.311 57.895 15.23 0.00 34.93 3.18
194 195 2.978946 GCCGGGATCCAAAGGGTCA 61.979 63.158 15.23 0.00 34.93 4.02
195 196 1.342672 TAGCCGGGATCCAAAGGGTC 61.343 60.000 22.58 10.66 35.87 4.46
196 197 1.307517 TAGCCGGGATCCAAAGGGT 60.308 57.895 22.55 22.55 38.18 4.34
198 199 0.254747 TTGTAGCCGGGATCCAAAGG 59.745 55.000 15.23 14.43 0.00 3.11
199 200 2.348411 ATTGTAGCCGGGATCCAAAG 57.652 50.000 15.23 4.03 0.00 2.77
202 203 2.025793 TGAAAATTGTAGCCGGGATCCA 60.026 45.455 15.23 0.00 0.00 3.41
203 204 2.618709 CTGAAAATTGTAGCCGGGATCC 59.381 50.000 1.92 1.92 0.00 3.36
205 206 2.241176 TCCTGAAAATTGTAGCCGGGAT 59.759 45.455 2.18 0.00 0.00 3.85
206 207 1.631388 TCCTGAAAATTGTAGCCGGGA 59.369 47.619 2.18 0.00 0.00 5.14
208 209 2.618709 GGATCCTGAAAATTGTAGCCGG 59.381 50.000 3.84 0.00 0.00 6.13
209 210 3.313526 CAGGATCCTGAAAATTGTAGCCG 59.686 47.826 34.54 3.65 46.30 5.52
226 227 1.471119 CAGGTGCATGCTTTCAGGAT 58.529 50.000 20.33 0.00 0.00 3.24
227 228 1.246056 GCAGGTGCATGCTTTCAGGA 61.246 55.000 20.33 0.00 43.07 3.86
228 229 1.214589 GCAGGTGCATGCTTTCAGG 59.785 57.895 20.33 4.85 43.07 3.86
229 230 4.883026 GCAGGTGCATGCTTTCAG 57.117 55.556 20.33 6.32 43.07 3.02
243 244 0.098376 GCTCGATCTTTTGGCAGCAG 59.902 55.000 0.00 0.00 0.00 4.24
472 493 3.637926 GACTACGCCACCGTCCACC 62.638 68.421 0.00 0.00 46.39 4.61
483 504 1.972660 ATGCCCTCCTTGGACTACGC 61.973 60.000 0.00 0.00 38.35 4.42
484 505 0.179073 CATGCCCTCCTTGGACTACG 60.179 60.000 0.00 0.00 38.35 3.51
502 873 3.301554 CAACCCCACCAATGCGCA 61.302 61.111 14.96 14.96 0.00 6.09
563 934 4.829518 TCGTCTGATGTCGCCGCG 62.830 66.667 6.39 6.39 0.00 6.46
572 943 1.198713 ATGCACCTTCCTCGTCTGAT 58.801 50.000 0.00 0.00 0.00 2.90
614 985 3.140144 TCCACTTTTCTTCCAATCCACCT 59.860 43.478 0.00 0.00 0.00 4.00
640 1011 0.332972 GGCCAACTCAAATCCCCTCT 59.667 55.000 0.00 0.00 0.00 3.69
655 1026 1.768684 GACTCCAACACCTCAGGCCA 61.769 60.000 5.01 0.00 0.00 5.36
662 1033 0.966920 CACGTAGGACTCCAACACCT 59.033 55.000 0.00 0.00 37.76 4.00
717 1088 2.034053 GCAAACCGGAGACAATTTGTGA 59.966 45.455 9.46 0.00 37.23 3.58
770 1141 2.741211 GCCGACCTCAAACCGTCC 60.741 66.667 0.00 0.00 0.00 4.79
966 1347 9.558396 CTGCTTTCTTCTCCTATTATGATCTTT 57.442 33.333 0.00 0.00 0.00 2.52
1146 2877 2.266055 GAGGACAGGTCGGGCAAG 59.734 66.667 0.00 0.00 0.00 4.01
1412 3164 1.128188 GTCCCTCTGGAACCACTGGT 61.128 60.000 0.00 0.00 44.07 4.00
1502 3266 3.777925 CCAGCGCGTTGAACTCCG 61.778 66.667 25.28 2.12 0.00 4.63
1549 3313 2.887568 GACGAGCTCCGCCATGTG 60.888 66.667 8.47 0.00 43.32 3.21
1673 3437 2.426023 GGTCCAGCACCGAACACT 59.574 61.111 0.00 0.00 34.56 3.55
1837 3618 1.398390 CGGGAAGTTGCTAGAATGTGC 59.602 52.381 0.00 0.00 0.00 4.57
1846 3627 1.981256 AATGTGAACGGGAAGTTGCT 58.019 45.000 0.00 0.00 44.35 3.91
1847 3628 2.793278 AAATGTGAACGGGAAGTTGC 57.207 45.000 0.00 0.00 44.35 4.17
1848 3629 5.446741 CGGTATAAATGTGAACGGGAAGTTG 60.447 44.000 0.00 0.00 44.35 3.16
1872 3653 7.730364 ATTATTACGACCAACATGAGGAATC 57.270 36.000 14.40 3.56 0.00 2.52
1896 3677 9.702494 GCATGCATGATATTAGCTATGATACTA 57.298 33.333 30.64 0.00 0.00 1.82
1897 3678 7.660617 GGCATGCATGATATTAGCTATGATACT 59.339 37.037 30.64 0.00 0.00 2.12
1898 3679 7.443272 TGGCATGCATGATATTAGCTATGATAC 59.557 37.037 30.64 5.71 0.00 2.24
1899 3680 7.511268 TGGCATGCATGATATTAGCTATGATA 58.489 34.615 30.64 0.00 0.00 2.15
1900 3681 6.362248 TGGCATGCATGATATTAGCTATGAT 58.638 36.000 30.64 0.00 0.00 2.45
1901 3682 5.747342 TGGCATGCATGATATTAGCTATGA 58.253 37.500 30.64 0.00 0.00 2.15
1903 3684 6.185511 AGTTGGCATGCATGATATTAGCTAT 58.814 36.000 30.64 1.91 0.00 2.97
1904 3685 5.563592 AGTTGGCATGCATGATATTAGCTA 58.436 37.500 30.64 7.90 0.00 3.32
1905 3686 4.404640 AGTTGGCATGCATGATATTAGCT 58.595 39.130 30.64 13.71 0.00 3.32
1906 3687 4.778534 AGTTGGCATGCATGATATTAGC 57.221 40.909 30.64 12.56 0.00 3.09
1907 3688 5.163683 GGCTAGTTGGCATGCATGATATTAG 60.164 44.000 30.64 20.95 41.37 1.73
1908 3689 4.701651 GGCTAGTTGGCATGCATGATATTA 59.298 41.667 30.64 13.03 41.37 0.98
1910 3691 3.087031 GGCTAGTTGGCATGCATGATAT 58.913 45.455 30.64 12.41 41.37 1.63
1911 3692 2.158638 TGGCTAGTTGGCATGCATGATA 60.159 45.455 30.64 14.66 46.76 2.15
1914 3695 2.495809 TGGCTAGTTGGCATGCATG 58.504 52.632 22.70 22.70 46.76 4.06
1921 3702 6.207691 TCTTATCAAAATTGGCTAGTTGGC 57.792 37.500 0.00 0.00 42.18 4.52
1954 3735 9.981460 ACTCAACCCTCTATTTCTTCATTTAAT 57.019 29.630 0.00 0.00 0.00 1.40
1957 3738 9.620259 GATACTCAACCCTCTATTTCTTCATTT 57.380 33.333 0.00 0.00 0.00 2.32
1958 3739 8.772250 TGATACTCAACCCTCTATTTCTTCATT 58.228 33.333 0.00 0.00 0.00 2.57
1959 3740 8.324191 TGATACTCAACCCTCTATTTCTTCAT 57.676 34.615 0.00 0.00 0.00 2.57
1960 3741 7.733773 TGATACTCAACCCTCTATTTCTTCA 57.266 36.000 0.00 0.00 0.00 3.02
1963 3744 9.607333 TGATATGATACTCAACCCTCTATTTCT 57.393 33.333 0.00 0.00 0.00 2.52
1969 3750 9.726652 ATGATATGATATGATACTCAACCCTCT 57.273 33.333 0.00 0.00 0.00 3.69
1970 3751 9.761504 CATGATATGATATGATACTCAACCCTC 57.238 37.037 0.00 0.00 0.00 4.30
1971 3752 9.498039 TCATGATATGATATGATACTCAACCCT 57.502 33.333 0.00 0.00 33.59 4.34
2012 3793 9.506018 TGCATGACACATAGTAATATAGCATTT 57.494 29.630 0.00 0.00 0.00 2.32
2013 3794 9.676861 ATGCATGACACATAGTAATATAGCATT 57.323 29.630 0.00 0.00 33.20 3.56
2014 3795 9.106070 CATGCATGACACATAGTAATATAGCAT 57.894 33.333 22.59 0.00 36.98 3.79
2015 3796 7.550196 CCATGCATGACACATAGTAATATAGCA 59.450 37.037 28.31 0.00 0.00 3.49
2016 3797 7.466455 GCCATGCATGACACATAGTAATATAGC 60.466 40.741 28.31 12.00 0.00 2.97
2017 3798 7.550196 TGCCATGCATGACACATAGTAATATAG 59.450 37.037 28.31 5.81 31.71 1.31
2018 3799 7.393216 TGCCATGCATGACACATAGTAATATA 58.607 34.615 28.31 0.00 31.71 0.86
2019 3800 6.240145 TGCCATGCATGACACATAGTAATAT 58.760 36.000 28.31 0.00 31.71 1.28
2020 3801 5.619220 TGCCATGCATGACACATAGTAATA 58.381 37.500 28.31 0.00 31.71 0.98
2021 3802 4.463070 TGCCATGCATGACACATAGTAAT 58.537 39.130 28.31 0.00 31.71 1.89
2022 3803 3.883669 TGCCATGCATGACACATAGTAA 58.116 40.909 28.31 0.00 31.71 2.24
2023 3804 3.557228 TGCCATGCATGACACATAGTA 57.443 42.857 28.31 5.91 31.71 1.82
2024 3805 2.423446 TGCCATGCATGACACATAGT 57.577 45.000 28.31 0.00 31.71 2.12
2025 3806 3.316868 TCATTGCCATGCATGACACATAG 59.683 43.478 28.31 15.98 38.76 2.23
2026 3807 3.288964 TCATTGCCATGCATGACACATA 58.711 40.909 28.31 8.33 38.76 2.29
2027 3808 2.104170 TCATTGCCATGCATGACACAT 58.896 42.857 28.31 14.92 38.76 3.21
2028 3809 1.546961 TCATTGCCATGCATGACACA 58.453 45.000 28.31 18.81 38.76 3.72
2029 3810 2.658373 TTCATTGCCATGCATGACAC 57.342 45.000 28.31 16.49 38.76 3.67
2030 3811 3.897141 ATTTCATTGCCATGCATGACA 57.103 38.095 28.31 20.53 38.76 3.58
2031 3812 9.811995 ATATTATATTTCATTGCCATGCATGAC 57.188 29.630 28.31 17.77 38.76 3.06
2073 3854 9.190317 ACTATCTTCCGAATGCATAGTATCATA 57.810 33.333 0.00 0.00 30.15 2.15
2074 3855 8.072321 ACTATCTTCCGAATGCATAGTATCAT 57.928 34.615 0.00 0.00 30.15 2.45
2075 3856 7.468141 ACTATCTTCCGAATGCATAGTATCA 57.532 36.000 0.00 0.00 30.15 2.15
2076 3857 9.672086 GATACTATCTTCCGAATGCATAGTATC 57.328 37.037 22.06 22.06 44.69 2.24
2077 3858 8.346300 CGATACTATCTTCCGAATGCATAGTAT 58.654 37.037 17.61 17.61 42.23 2.12
2078 3859 7.336176 ACGATACTATCTTCCGAATGCATAGTA 59.664 37.037 0.00 0.81 37.09 1.82
2079 3860 6.151312 ACGATACTATCTTCCGAATGCATAGT 59.849 38.462 0.00 0.00 35.10 2.12
2080 3861 6.556212 ACGATACTATCTTCCGAATGCATAG 58.444 40.000 0.00 0.00 0.00 2.23
2081 3862 6.510879 ACGATACTATCTTCCGAATGCATA 57.489 37.500 0.00 0.00 0.00 3.14
2082 3863 5.392767 ACGATACTATCTTCCGAATGCAT 57.607 39.130 0.00 0.00 0.00 3.96
2083 3864 4.848562 ACGATACTATCTTCCGAATGCA 57.151 40.909 0.00 0.00 0.00 3.96
2084 3865 5.568296 GTGTACGATACTATCTTCCGAATGC 59.432 44.000 0.00 0.00 0.00 3.56
2085 3866 6.900189 AGTGTACGATACTATCTTCCGAATG 58.100 40.000 0.00 0.00 0.00 2.67
2086 3867 8.613060 TTAGTGTACGATACTATCTTCCGAAT 57.387 34.615 0.00 0.00 31.27 3.34
2087 3868 8.613060 ATTAGTGTACGATACTATCTTCCGAA 57.387 34.615 0.00 0.00 31.27 4.30
2088 3869 9.881649 ATATTAGTGTACGATACTATCTTCCGA 57.118 33.333 0.00 0.00 31.27 4.55
2138 3919 6.042897 GGGCTGGTTGTAATAGGAAGTACTAT 59.957 42.308 0.00 0.00 35.24 2.12
2139 3920 5.364735 GGGCTGGTTGTAATAGGAAGTACTA 59.635 44.000 0.00 0.00 0.00 1.82
2141 3922 4.449131 GGGCTGGTTGTAATAGGAAGTAC 58.551 47.826 0.00 0.00 0.00 2.73
2147 3928 1.283613 TGTGGGGCTGGTTGTAATAGG 59.716 52.381 0.00 0.00 0.00 2.57
2149 3930 3.527507 TTTGTGGGGCTGGTTGTAATA 57.472 42.857 0.00 0.00 0.00 0.98
2153 3934 0.616111 TGTTTTGTGGGGCTGGTTGT 60.616 50.000 0.00 0.00 0.00 3.32
2157 3938 0.104671 CACTTGTTTTGTGGGGCTGG 59.895 55.000 0.00 0.00 0.00 4.85
2158 3939 1.067516 CTCACTTGTTTTGTGGGGCTG 59.932 52.381 0.00 0.00 36.21 4.85
2160 3941 0.249447 GCTCACTTGTTTTGTGGGGC 60.249 55.000 0.00 0.00 36.49 5.80
2161 3942 0.030638 CGCTCACTTGTTTTGTGGGG 59.969 55.000 0.00 0.00 36.49 4.96
2162 3943 0.594796 GCGCTCACTTGTTTTGTGGG 60.595 55.000 0.00 0.00 38.82 4.61
2163 3944 0.594796 GGCGCTCACTTGTTTTGTGG 60.595 55.000 7.64 0.00 36.21 4.17
2164 3945 0.381801 AGGCGCTCACTTGTTTTGTG 59.618 50.000 7.64 0.00 36.82 3.33
2182 4083 5.107453 GGATGCATCCGTTTATTCTCGTTAG 60.107 44.000 29.34 0.00 37.19 2.34
2256 4211 8.492673 TCGAGCAAGTCAAAAATATCAGTAAT 57.507 30.769 0.00 0.00 0.00 1.89
2277 4233 1.499056 GCACACACTGCCAATCGAG 59.501 57.895 0.00 0.00 40.42 4.04
2321 4277 3.189080 TGCATTTTGTCAGGATCTTCACG 59.811 43.478 0.00 0.00 0.00 4.35
2411 4373 3.819564 AGTACTTGCTGTGAGTGTGAA 57.180 42.857 0.00 0.00 0.00 3.18
2433 4395 5.277876 GCATATCCATCAAGACTTGAGCTTG 60.278 44.000 21.78 15.20 43.98 4.01
2471 4433 3.438087 CCTCACGTTCTTTGCTCATGAAT 59.562 43.478 0.00 0.00 0.00 2.57
2500 4462 4.924305 TCCATGAATATCTTTTGCCAGC 57.076 40.909 0.00 0.00 0.00 4.85
2528 4490 6.964934 CGGGCTGTATTTTGTAATGACTAAAC 59.035 38.462 0.00 0.00 33.95 2.01
2552 4514 1.587054 GGATCGCATCCCTAGGACG 59.413 63.158 11.48 8.69 43.88 4.79
2561 4523 2.740981 GAGTTGGATGATGGATCGCATC 59.259 50.000 14.03 14.03 40.05 3.91
2627 4622 9.449719 CCTTGGAAGCGGAAAGTATATATAAAT 57.550 33.333 0.00 0.00 0.00 1.40
2628 4623 8.434392 ACCTTGGAAGCGGAAAGTATATATAAA 58.566 33.333 0.00 0.00 0.00 1.40
2629 4624 7.876068 CACCTTGGAAGCGGAAAGTATATATAA 59.124 37.037 0.00 0.00 0.00 0.98
2630 4625 7.233962 TCACCTTGGAAGCGGAAAGTATATATA 59.766 37.037 0.00 0.00 0.00 0.86
2631 4626 6.042781 TCACCTTGGAAGCGGAAAGTATATAT 59.957 38.462 0.00 0.00 0.00 0.86
2632 4627 5.364446 TCACCTTGGAAGCGGAAAGTATATA 59.636 40.000 0.00 0.00 0.00 0.86
2633 4628 4.163458 TCACCTTGGAAGCGGAAAGTATAT 59.837 41.667 0.00 0.00 0.00 0.86
2634 4629 3.516300 TCACCTTGGAAGCGGAAAGTATA 59.484 43.478 0.00 0.00 0.00 1.47
2635 4630 2.304761 TCACCTTGGAAGCGGAAAGTAT 59.695 45.455 0.00 0.00 0.00 2.12
2636 4631 1.695242 TCACCTTGGAAGCGGAAAGTA 59.305 47.619 0.00 0.00 0.00 2.24
2637 4632 0.472471 TCACCTTGGAAGCGGAAAGT 59.528 50.000 0.00 0.00 0.00 2.66
2638 4633 1.826385 ATCACCTTGGAAGCGGAAAG 58.174 50.000 0.00 0.00 0.00 2.62
2639 4634 2.706890 GTATCACCTTGGAAGCGGAAA 58.293 47.619 0.00 0.00 0.00 3.13
2640 4635 1.404986 CGTATCACCTTGGAAGCGGAA 60.405 52.381 0.00 0.00 0.00 4.30
2641 4636 0.174845 CGTATCACCTTGGAAGCGGA 59.825 55.000 0.00 0.00 0.00 5.54
2642 4637 0.108329 ACGTATCACCTTGGAAGCGG 60.108 55.000 0.00 0.00 0.00 5.52
2643 4638 2.572191 TACGTATCACCTTGGAAGCG 57.428 50.000 0.00 0.00 0.00 4.68
2698 4699 2.549926 ACATATCGCTGTCGCATTTGA 58.450 42.857 0.00 0.00 35.30 2.69
2735 4737 8.786826 TCGGACTTTTGAATGAAGTACATAAT 57.213 30.769 0.00 0.00 37.74 1.28
2736 4738 8.610248 TTCGGACTTTTGAATGAAGTACATAA 57.390 30.769 0.00 0.00 37.74 1.90
2834 4845 3.585732 CCTACCTTTCAGGGTCCTAAACA 59.414 47.826 0.00 0.00 40.58 2.83
2835 4846 3.842436 TCCTACCTTTCAGGGTCCTAAAC 59.158 47.826 0.00 0.00 40.58 2.01
2836 4847 3.842436 GTCCTACCTTTCAGGGTCCTAAA 59.158 47.826 0.00 0.00 40.58 1.85
2837 4848 3.447950 GTCCTACCTTTCAGGGTCCTAA 58.552 50.000 0.00 0.00 40.58 2.69
2840 4851 0.910338 GGTCCTACCTTTCAGGGTCC 59.090 60.000 0.00 0.00 40.58 4.46
2841 4852 1.652947 TGGTCCTACCTTTCAGGGTC 58.347 55.000 0.00 0.00 40.58 4.46
2842 4853 2.361085 ATGGTCCTACCTTTCAGGGT 57.639 50.000 0.00 0.00 40.58 4.34
2843 4854 4.037927 TCTTATGGTCCTACCTTTCAGGG 58.962 47.826 0.00 0.00 40.58 4.45
2844 4855 4.717280 AGTCTTATGGTCCTACCTTTCAGG 59.283 45.833 0.00 0.00 39.58 3.86
2845 4856 5.941555 AGTCTTATGGTCCTACCTTTCAG 57.058 43.478 0.00 0.00 39.58 3.02
2848 4859 6.982899 TCTCTAGTCTTATGGTCCTACCTTT 58.017 40.000 0.00 0.00 39.58 3.11
2857 4928 9.442047 CTTCAAAAACATCTCTAGTCTTATGGT 57.558 33.333 0.00 0.00 0.00 3.55
2905 4976 7.186021 AGAAAGTGTAATGGTGACTAAAACG 57.814 36.000 0.00 0.00 0.00 3.60
2947 5018 9.793252 GAACATAATAAGAGTGTGCATGAAAAT 57.207 29.630 0.00 0.00 0.00 1.82
2950 5021 7.112122 AGGAACATAATAAGAGTGTGCATGAA 58.888 34.615 0.00 0.00 0.00 2.57
2963 5034 4.407621 TGAGGGCGAAGAGGAACATAATAA 59.592 41.667 0.00 0.00 0.00 1.40
2964 5035 3.964688 TGAGGGCGAAGAGGAACATAATA 59.035 43.478 0.00 0.00 0.00 0.98
2965 5036 2.771943 TGAGGGCGAAGAGGAACATAAT 59.228 45.455 0.00 0.00 0.00 1.28
2966 5037 2.184533 TGAGGGCGAAGAGGAACATAA 58.815 47.619 0.00 0.00 0.00 1.90
2967 5038 1.860641 TGAGGGCGAAGAGGAACATA 58.139 50.000 0.00 0.00 0.00 2.29
2968 5039 1.134280 CATGAGGGCGAAGAGGAACAT 60.134 52.381 0.00 0.00 0.00 2.71
2969 5040 0.250234 CATGAGGGCGAAGAGGAACA 59.750 55.000 0.00 0.00 0.00 3.18
2970 5041 0.462759 CCATGAGGGCGAAGAGGAAC 60.463 60.000 0.00 0.00 0.00 3.62
3033 5104 0.310854 CACGGCCAGAAACAAAGGTC 59.689 55.000 2.24 0.00 0.00 3.85
3183 5257 2.099756 GGCATCCAGAACTTAATGTGGC 59.900 50.000 0.00 0.00 33.86 5.01
3248 5322 9.233232 ACAACAAAGAAAAATAACTAGAAAGCG 57.767 29.630 0.00 0.00 0.00 4.68
3299 5373 1.967779 ACCAACACCAAATAAGCACCC 59.032 47.619 0.00 0.00 0.00 4.61
3343 5417 4.215109 AGGCAGTTTTGTGTCTAATGGTT 58.785 39.130 0.00 0.00 27.80 3.67
3345 5419 4.853924 AAGGCAGTTTTGTGTCTAATGG 57.146 40.909 0.00 0.00 30.14 3.16
3421 5495 4.333649 GTCATGTGGTACCTCATGTTCATG 59.666 45.833 37.45 23.64 43.93 3.07
3473 5547 4.134563 ACTGGACATAACAACAGTGTTCC 58.865 43.478 5.27 3.12 45.00 3.62
3489 5563 6.925610 TCTTTATATGATGTTGCACTGGAC 57.074 37.500 0.00 0.00 0.00 4.02



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.