Multiple sequence alignment - TraesCS2A01G438600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G438600 chr2A 100.000 2636 0 0 1 2636 689762586 689759951 0.000000e+00 4868.0
1 TraesCS2A01G438600 chr2A 89.043 1223 65 29 846 2029 689805429 689804237 0.000000e+00 1452.0
2 TraesCS2A01G438600 chr2A 90.101 1091 59 14 994 2064 689769954 689768893 0.000000e+00 1371.0
3 TraesCS2A01G438600 chr2A 100.000 45 0 0 920 964 689770064 689770020 1.680000e-12 84.2
4 TraesCS2A01G438600 chr2D 90.437 1464 89 21 1061 2505 546806446 546807877 0.000000e+00 1881.0
5 TraesCS2A01G438600 chr2D 87.164 1192 97 29 1057 2208 546682364 546683539 0.000000e+00 1303.0
6 TraesCS2A01G438600 chr2D 85.605 1181 84 35 936 2064 546733207 546734353 0.000000e+00 1160.0
7 TraesCS2A01G438600 chr2D 88.622 958 72 18 1061 2013 546637592 546638517 0.000000e+00 1131.0
8 TraesCS2A01G438600 chr2D 85.787 788 94 10 1 775 546740137 546740919 0.000000e+00 819.0
9 TraesCS2A01G438600 chr2D 87.898 157 19 0 994 1150 546779186 546779342 4.480000e-43 185.0
10 TraesCS2A01G438600 chr2D 84.091 132 7 4 2068 2199 546734626 546734743 5.960000e-22 115.0
11 TraesCS2A01G438600 chr5A 91.060 783 64 5 1085 1862 377361908 377362689 0.000000e+00 1053.0
12 TraesCS2A01G438600 chr5A 77.634 465 76 14 287 727 445832084 445832544 9.360000e-65 257.0
13 TraesCS2A01G438600 chr2B 93.260 638 43 0 1061 1698 653592251 653592888 0.000000e+00 941.0
14 TraesCS2A01G438600 chr2B 85.056 629 89 3 1061 1684 653415671 653416299 1.030000e-178 636.0
15 TraesCS2A01G438600 chr2B 86.415 265 35 1 21 284 436558025 436558289 3.320000e-74 289.0
16 TraesCS2A01G438600 chr2B 82.313 294 31 12 2233 2510 653593202 653593490 4.390000e-58 235.0
17 TraesCS2A01G438600 chr2B 81.887 265 46 2 1 263 34446138 34446402 3.410000e-54 222.0
18 TraesCS2A01G438600 chr2B 80.714 280 51 3 3 280 34524458 34524736 5.710000e-52 215.0
19 TraesCS2A01G438600 chr2B 91.195 159 10 3 1872 2026 653592990 653593148 2.060000e-51 213.0
20 TraesCS2A01G438600 chr2B 82.787 244 23 4 920 1145 653583223 653583465 1.600000e-47 200.0
21 TraesCS2A01G438600 chr2B 80.093 216 33 4 522 727 793784451 793784666 4.540000e-33 152.0
22 TraesCS2A01G438600 chr5D 84.871 271 36 5 20 287 69071618 69071350 4.320000e-68 268.0
23 TraesCS2A01G438600 chr5D 83.650 263 42 1 19 280 440353411 440353149 2.030000e-61 246.0
24 TraesCS2A01G438600 chr4B 85.019 267 36 4 21 284 471344684 471344949 4.320000e-68 268.0
25 TraesCS2A01G438600 chr4B 96.000 50 2 0 2137 2186 447365331 447365282 6.050000e-12 82.4
26 TraesCS2A01G438600 chr3A 76.426 526 91 13 284 778 681556457 681555934 1.210000e-63 254.0
27 TraesCS2A01G438600 chr1B 80.415 337 48 13 323 644 566986367 566986034 9.430000e-60 241.0
28 TraesCS2A01G438600 chr1B 77.835 388 59 18 279 649 598408351 598407974 5.710000e-52 215.0
29 TraesCS2A01G438600 chr1B 77.461 386 63 17 279 649 598393096 598392720 2.660000e-50 209.0
30 TraesCS2A01G438600 chr1B 79.574 235 38 5 504 728 606360632 606360398 2.720000e-35 159.0
31 TraesCS2A01G438600 chr1B 84.286 140 20 2 504 642 395267595 395267457 4.580000e-28 135.0
32 TraesCS2A01G438600 chr5B 83.019 265 42 3 21 284 535689398 535689136 1.220000e-58 237.0
33 TraesCS2A01G438600 chr6D 76.180 466 85 15 285 727 379847970 379847508 3.410000e-54 222.0
34 TraesCS2A01G438600 chr6D 79.167 336 56 5 285 608 285656135 285656468 1.230000e-53 220.0
35 TraesCS2A01G438600 chr6D 80.935 278 44 9 12 284 316827914 316827641 7.390000e-51 211.0
36 TraesCS2A01G438600 chr3D 78.964 309 52 7 285 581 28269540 28269847 5.750000e-47 198.0
37 TraesCS2A01G438600 chr3B 81.140 228 39 2 285 510 488134348 488134573 2.080000e-41 180.0
38 TraesCS2A01G438600 chr3B 81.481 216 35 3 285 498 47265465 47265677 3.490000e-39 172.0
39 TraesCS2A01G438600 chr3B 83.688 141 23 0 504 644 8012559 8012699 1.650000e-27 134.0
40 TraesCS2A01G438600 chr4A 85.816 141 20 0 504 644 87241024 87240884 1.630000e-32 150.0
41 TraesCS2A01G438600 chr4A 94.000 50 3 0 2137 2186 103333030 103333079 2.810000e-10 76.8
42 TraesCS2A01G438600 chr6A 79.646 226 29 11 422 633 21555804 21555582 2.110000e-31 147.0
43 TraesCS2A01G438600 chr4D 94.000 50 3 0 2137 2186 361978997 361978948 2.810000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G438600 chr2A 689759951 689762586 2635 True 4868.0 4868 100.000000 1 2636 1 chr2A.!!$R1 2635
1 TraesCS2A01G438600 chr2A 689804237 689805429 1192 True 1452.0 1452 89.043000 846 2029 1 chr2A.!!$R2 1183
2 TraesCS2A01G438600 chr2A 689768893 689770064 1171 True 727.6 1371 95.050500 920 2064 2 chr2A.!!$R3 1144
3 TraesCS2A01G438600 chr2D 546806446 546807877 1431 False 1881.0 1881 90.437000 1061 2505 1 chr2D.!!$F5 1444
4 TraesCS2A01G438600 chr2D 546682364 546683539 1175 False 1303.0 1303 87.164000 1057 2208 1 chr2D.!!$F2 1151
5 TraesCS2A01G438600 chr2D 546637592 546638517 925 False 1131.0 1131 88.622000 1061 2013 1 chr2D.!!$F1 952
6 TraesCS2A01G438600 chr2D 546740137 546740919 782 False 819.0 819 85.787000 1 775 1 chr2D.!!$F3 774
7 TraesCS2A01G438600 chr2D 546733207 546734743 1536 False 637.5 1160 84.848000 936 2199 2 chr2D.!!$F6 1263
8 TraesCS2A01G438600 chr5A 377361908 377362689 781 False 1053.0 1053 91.060000 1085 1862 1 chr5A.!!$F1 777
9 TraesCS2A01G438600 chr2B 653415671 653416299 628 False 636.0 636 85.056000 1061 1684 1 chr2B.!!$F4 623
10 TraesCS2A01G438600 chr2B 653592251 653593490 1239 False 463.0 941 88.922667 1061 2510 3 chr2B.!!$F7 1449
11 TraesCS2A01G438600 chr3A 681555934 681556457 523 True 254.0 254 76.426000 284 778 1 chr3A.!!$R1 494


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
583 597 0.035317 TTGTTCTGATGCGCTGGTCT 59.965 50.0 9.73 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2547 3023 0.037605 GAGGAACGGACGACACCAAT 60.038 55.0 0.0 0.0 0.0 3.16 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.255149 ACCCTGAACGTCTATATAAGCCG 59.745 47.826 0.00 0.00 0.00 5.52
34 35 5.388944 CCTGAACGTCTATATAAGCCGTAC 58.611 45.833 0.00 0.00 0.00 3.67
36 37 4.083855 TGAACGTCTATATAAGCCGTACGG 60.084 45.833 30.06 30.06 38.57 4.02
57 58 4.338682 CGGTTTAGTCTGTAGAGGCACTAT 59.661 45.833 0.00 0.00 41.55 2.12
76 77 7.009568 CACTATTGCAAGGTTTAGAGCTTAG 57.990 40.000 4.94 0.00 41.44 2.18
86 87 5.780793 AGGTTTAGAGCTTAGAACTCCTTCA 59.219 40.000 0.00 0.00 34.56 3.02
95 96 6.322712 AGCTTAGAACTCCTTCATACGATCTT 59.677 38.462 0.00 0.00 0.00 2.40
96 97 6.419413 GCTTAGAACTCCTTCATACGATCTTG 59.581 42.308 0.00 0.00 0.00 3.02
97 98 4.688021 AGAACTCCTTCATACGATCTTGC 58.312 43.478 0.00 0.00 0.00 4.01
118 119 8.098912 TCTTGCGGTAGATCATACTATACACTA 58.901 37.037 0.00 0.00 0.00 2.74
152 153 8.380867 TCACAATCAATATATCAGAAGCAGGAT 58.619 33.333 0.00 0.00 0.00 3.24
157 158 8.655935 TCAATATATCAGAAGCAGGATGTAGA 57.344 34.615 0.00 0.00 39.31 2.59
158 159 9.264653 TCAATATATCAGAAGCAGGATGTAGAT 57.735 33.333 0.00 0.00 39.31 1.98
182 183 2.166907 ATCTCATCAAGAGGGTCCGT 57.833 50.000 0.00 0.00 44.81 4.69
191 192 1.611556 GAGGGTCCGTACCTGGGTT 60.612 63.158 0.00 0.00 45.95 4.11
197 198 3.392285 GGGTCCGTACCTGGGTTAATATT 59.608 47.826 0.00 0.00 45.95 1.28
198 199 4.383173 GGTCCGTACCTGGGTTAATATTG 58.617 47.826 0.00 0.00 43.08 1.90
204 205 3.881220 ACCTGGGTTAATATTGTGTCCG 58.119 45.455 0.00 0.00 0.00 4.79
207 208 4.703093 CCTGGGTTAATATTGTGTCCGTTT 59.297 41.667 0.00 0.00 0.00 3.60
211 212 6.088173 GGGTTAATATTGTGTCCGTTTTGTC 58.912 40.000 0.00 0.00 0.00 3.18
214 215 7.308109 GGTTAATATTGTGTCCGTTTTGTCTCA 60.308 37.037 0.00 0.00 0.00 3.27
221 222 4.271533 GTGTCCGTTTTGTCTCATGTTACA 59.728 41.667 0.00 0.00 0.00 2.41
222 223 5.049680 GTGTCCGTTTTGTCTCATGTTACAT 60.050 40.000 0.00 0.00 0.00 2.29
223 224 5.178623 TGTCCGTTTTGTCTCATGTTACATC 59.821 40.000 0.00 0.00 0.00 3.06
224 225 5.408604 GTCCGTTTTGTCTCATGTTACATCT 59.591 40.000 0.00 0.00 0.00 2.90
225 226 6.588756 GTCCGTTTTGTCTCATGTTACATCTA 59.411 38.462 0.00 0.00 0.00 1.98
226 227 6.811665 TCCGTTTTGTCTCATGTTACATCTAG 59.188 38.462 0.00 0.00 0.00 2.43
227 228 6.455646 CCGTTTTGTCTCATGTTACATCTAGC 60.456 42.308 0.00 0.00 0.00 3.42
241 243 4.892433 ACATCTAGCTCATATCACCAAGC 58.108 43.478 0.00 0.00 34.95 4.01
266 268 1.233369 CCCCCTACCCGAGATCTGT 59.767 63.158 0.00 0.00 0.00 3.41
311 313 1.824852 GGTGGGAGGGCTATGTTTTTG 59.175 52.381 0.00 0.00 0.00 2.44
315 317 3.245948 TGGGAGGGCTATGTTTTTGGATT 60.246 43.478 0.00 0.00 0.00 3.01
317 319 4.225042 GGGAGGGCTATGTTTTTGGATTTT 59.775 41.667 0.00 0.00 0.00 1.82
370 372 1.176619 TCAGGAAGGCGAGACAACGA 61.177 55.000 0.00 0.00 35.09 3.85
371 373 0.108615 CAGGAAGGCGAGACAACGAT 60.109 55.000 0.00 0.00 35.09 3.73
400 402 6.445139 TCCTTGAAGATGGAATAAGGTTCTCT 59.555 38.462 0.00 0.00 39.11 3.10
414 416 2.093106 GTTCTCTCCGTCTAGCCTTCA 58.907 52.381 0.00 0.00 0.00 3.02
419 421 2.431057 TCTCCGTCTAGCCTTCATTTCC 59.569 50.000 0.00 0.00 0.00 3.13
443 447 2.104132 CGTCGCATCATCGGTGGA 59.896 61.111 0.00 0.00 0.00 4.02
445 449 1.153647 GTCGCATCATCGGTGGACA 60.154 57.895 0.00 0.00 0.00 4.02
470 474 1.548719 CAGGTGTGTCTCCGGTGAATA 59.451 52.381 7.99 0.00 0.00 1.75
481 485 4.019681 TCTCCGGTGAATATGTCTTTGGTT 60.020 41.667 3.14 0.00 0.00 3.67
520 534 3.239587 TGTCGTTTGTGTGTCTTCAGA 57.760 42.857 0.00 0.00 0.00 3.27
553 567 9.249457 CATTTTGATCTACGCTACTCTTCATAA 57.751 33.333 0.00 0.00 0.00 1.90
558 572 3.166489 ACGCTACTCTTCATAAGTGGC 57.834 47.619 1.98 1.98 44.89 5.01
560 574 3.166489 GCTACTCTTCATAAGTGGCGT 57.834 47.619 0.00 0.00 40.65 5.68
566 580 4.024048 ACTCTTCATAAGTGGCGTTTGTTG 60.024 41.667 0.00 0.00 0.00 3.33
567 581 3.880490 TCTTCATAAGTGGCGTTTGTTGT 59.120 39.130 0.00 0.00 0.00 3.32
568 582 4.336993 TCTTCATAAGTGGCGTTTGTTGTT 59.663 37.500 0.00 0.00 0.00 2.83
569 583 4.217754 TCATAAGTGGCGTTTGTTGTTC 57.782 40.909 0.00 0.00 0.00 3.18
570 584 3.880490 TCATAAGTGGCGTTTGTTGTTCT 59.120 39.130 0.00 0.00 0.00 3.01
571 585 2.559998 AAGTGGCGTTTGTTGTTCTG 57.440 45.000 0.00 0.00 0.00 3.02
572 586 1.745232 AGTGGCGTTTGTTGTTCTGA 58.255 45.000 0.00 0.00 0.00 3.27
573 587 2.297701 AGTGGCGTTTGTTGTTCTGAT 58.702 42.857 0.00 0.00 0.00 2.90
574 588 2.033299 AGTGGCGTTTGTTGTTCTGATG 59.967 45.455 0.00 0.00 0.00 3.07
575 589 1.268999 TGGCGTTTGTTGTTCTGATGC 60.269 47.619 0.00 0.00 0.00 3.91
576 590 1.044725 GCGTTTGTTGTTCTGATGCG 58.955 50.000 0.00 0.00 0.00 4.73
577 591 1.044725 CGTTTGTTGTTCTGATGCGC 58.955 50.000 0.00 0.00 0.00 6.09
578 592 1.334059 CGTTTGTTGTTCTGATGCGCT 60.334 47.619 9.73 0.00 0.00 5.92
579 593 2.046313 GTTTGTTGTTCTGATGCGCTG 58.954 47.619 9.73 0.00 0.00 5.18
580 594 0.592637 TTGTTGTTCTGATGCGCTGG 59.407 50.000 9.73 0.00 0.00 4.85
581 595 0.534877 TGTTGTTCTGATGCGCTGGT 60.535 50.000 9.73 0.00 0.00 4.00
582 596 0.166814 GTTGTTCTGATGCGCTGGTC 59.833 55.000 9.73 4.94 0.00 4.02
583 597 0.035317 TTGTTCTGATGCGCTGGTCT 59.965 50.000 9.73 0.00 0.00 3.85
584 598 0.035317 TGTTCTGATGCGCTGGTCTT 59.965 50.000 9.73 0.00 0.00 3.01
585 599 1.275010 TGTTCTGATGCGCTGGTCTTA 59.725 47.619 9.73 0.00 0.00 2.10
586 600 2.093500 TGTTCTGATGCGCTGGTCTTAT 60.093 45.455 9.73 0.00 0.00 1.73
587 601 2.229675 TCTGATGCGCTGGTCTTATG 57.770 50.000 9.73 0.00 0.00 1.90
588 602 1.202568 TCTGATGCGCTGGTCTTATGG 60.203 52.381 9.73 0.00 0.00 2.74
589 603 0.179048 TGATGCGCTGGTCTTATGGG 60.179 55.000 9.73 0.00 0.00 4.00
590 604 0.886490 GATGCGCTGGTCTTATGGGG 60.886 60.000 9.73 0.00 0.00 4.96
591 605 2.902343 GCGCTGGTCTTATGGGGC 60.902 66.667 0.00 0.00 0.00 5.80
592 606 2.203209 CGCTGGTCTTATGGGGCC 60.203 66.667 0.00 0.00 0.00 5.80
593 607 2.746375 CGCTGGTCTTATGGGGCCT 61.746 63.158 0.84 0.00 0.00 5.19
594 608 1.615262 GCTGGTCTTATGGGGCCTT 59.385 57.895 0.84 0.00 0.00 4.35
595 609 0.843984 GCTGGTCTTATGGGGCCTTA 59.156 55.000 0.84 0.00 0.00 2.69
596 610 1.202818 GCTGGTCTTATGGGGCCTTAG 60.203 57.143 0.84 0.00 0.00 2.18
597 611 0.843984 TGGTCTTATGGGGCCTTAGC 59.156 55.000 0.84 0.00 38.76 3.09
598 612 0.843984 GGTCTTATGGGGCCTTAGCA 59.156 55.000 0.84 0.00 42.56 3.49
599 613 1.425448 GGTCTTATGGGGCCTTAGCAT 59.575 52.381 0.84 0.14 42.56 3.79
600 614 2.508526 GTCTTATGGGGCCTTAGCATG 58.491 52.381 0.84 0.00 42.56 4.06
601 615 2.106511 GTCTTATGGGGCCTTAGCATGA 59.893 50.000 0.84 0.00 42.56 3.07
602 616 2.106511 TCTTATGGGGCCTTAGCATGAC 59.893 50.000 0.84 0.00 42.56 3.06
603 617 0.396435 TATGGGGCCTTAGCATGACG 59.604 55.000 0.84 0.00 42.56 4.35
604 618 1.344953 ATGGGGCCTTAGCATGACGA 61.345 55.000 0.84 0.00 42.56 4.20
605 619 1.523938 GGGGCCTTAGCATGACGAC 60.524 63.158 0.84 0.00 42.56 4.34
606 620 1.522569 GGGCCTTAGCATGACGACT 59.477 57.895 0.84 0.00 42.56 4.18
607 621 0.107654 GGGCCTTAGCATGACGACTT 60.108 55.000 0.84 0.00 42.56 3.01
608 622 1.679032 GGGCCTTAGCATGACGACTTT 60.679 52.381 0.84 0.00 42.56 2.66
609 623 1.666189 GGCCTTAGCATGACGACTTTC 59.334 52.381 0.00 0.00 42.56 2.62
610 624 2.622436 GCCTTAGCATGACGACTTTCT 58.378 47.619 0.00 0.00 39.53 2.52
611 625 2.349886 GCCTTAGCATGACGACTTTCTG 59.650 50.000 0.00 0.00 39.53 3.02
612 626 3.849911 CCTTAGCATGACGACTTTCTGA 58.150 45.455 0.00 0.00 0.00 3.27
613 627 4.437239 CCTTAGCATGACGACTTTCTGAT 58.563 43.478 0.00 0.00 0.00 2.90
614 628 4.872691 CCTTAGCATGACGACTTTCTGATT 59.127 41.667 0.00 0.00 0.00 2.57
615 629 5.220548 CCTTAGCATGACGACTTTCTGATTG 60.221 44.000 0.00 0.00 0.00 2.67
616 630 3.668447 AGCATGACGACTTTCTGATTGT 58.332 40.909 0.00 0.00 0.00 2.71
617 631 3.681897 AGCATGACGACTTTCTGATTGTC 59.318 43.478 0.00 1.90 0.00 3.18
618 632 3.681897 GCATGACGACTTTCTGATTGTCT 59.318 43.478 0.00 0.00 0.00 3.41
619 633 4.864806 GCATGACGACTTTCTGATTGTCTA 59.135 41.667 0.00 0.00 0.00 2.59
620 634 5.220303 GCATGACGACTTTCTGATTGTCTAC 60.220 44.000 0.00 4.27 0.00 2.59
621 635 5.707242 TGACGACTTTCTGATTGTCTACT 57.293 39.130 0.00 0.00 0.00 2.57
622 636 6.812879 TGACGACTTTCTGATTGTCTACTA 57.187 37.500 0.00 0.00 0.00 1.82
623 637 6.609533 TGACGACTTTCTGATTGTCTACTAC 58.390 40.000 0.00 0.00 0.00 2.73
624 638 6.206048 TGACGACTTTCTGATTGTCTACTACA 59.794 38.462 0.00 0.00 35.88 2.74
637 651 7.766219 TTGTCTACTACAACAAGTTCTGTTC 57.234 36.000 0.00 0.00 45.50 3.18
638 652 5.975344 TGTCTACTACAACAAGTTCTGTTCG 59.025 40.000 0.00 0.00 45.50 3.95
639 653 5.401674 GTCTACTACAACAAGTTCTGTTCGG 59.598 44.000 0.00 0.00 45.50 4.30
640 654 2.870411 ACTACAACAAGTTCTGTTCGGC 59.130 45.455 0.00 0.00 45.50 5.54
641 655 2.038387 ACAACAAGTTCTGTTCGGCT 57.962 45.000 0.00 0.00 45.50 5.52
642 656 1.940613 ACAACAAGTTCTGTTCGGCTC 59.059 47.619 0.00 0.00 45.50 4.70
643 657 1.264288 CAACAAGTTCTGTTCGGCTCC 59.736 52.381 0.00 0.00 45.50 4.70
644 658 0.250338 ACAAGTTCTGTTCGGCTCCC 60.250 55.000 0.00 0.00 32.99 4.30
655 669 4.286320 GGCTCCCGCGACGATGAT 62.286 66.667 8.23 0.00 36.88 2.45
656 670 3.032609 GCTCCCGCGACGATGATG 61.033 66.667 8.23 0.00 0.00 3.07
657 671 2.355126 CTCCCGCGACGATGATGG 60.355 66.667 8.23 0.00 0.00 3.51
658 672 4.585526 TCCCGCGACGATGATGGC 62.586 66.667 8.23 0.00 0.00 4.40
665 679 2.571757 ACGATGATGGCGTCACGT 59.428 55.556 22.59 22.59 40.28 4.49
666 680 1.516386 ACGATGATGGCGTCACGTC 60.516 57.895 22.59 13.47 38.97 4.34
667 681 1.226688 CGATGATGGCGTCACGTCT 60.227 57.895 12.39 0.00 40.28 4.18
668 682 0.802222 CGATGATGGCGTCACGTCTT 60.802 55.000 12.39 0.00 40.28 3.01
669 683 0.924090 GATGATGGCGTCACGTCTTC 59.076 55.000 12.39 10.60 40.28 2.87
670 684 0.246360 ATGATGGCGTCACGTCTTCA 59.754 50.000 21.06 21.06 46.18 3.02
671 685 0.246360 TGATGGCGTCACGTCTTCAT 59.754 50.000 15.75 6.72 39.85 2.57
672 686 0.924090 GATGGCGTCACGTCTTCATC 59.076 55.000 12.47 10.12 36.05 2.92
673 687 0.532573 ATGGCGTCACGTCTTCATCT 59.467 50.000 2.20 0.00 30.55 2.90
674 688 0.317160 TGGCGTCACGTCTTCATCTT 59.683 50.000 2.20 0.00 30.55 2.40
675 689 0.716108 GGCGTCACGTCTTCATCTTG 59.284 55.000 0.00 0.00 0.00 3.02
676 690 0.093705 GCGTCACGTCTTCATCTTGC 59.906 55.000 0.00 0.00 0.00 4.01
677 691 1.702886 CGTCACGTCTTCATCTTGCT 58.297 50.000 0.00 0.00 0.00 3.91
678 692 2.061773 CGTCACGTCTTCATCTTGCTT 58.938 47.619 0.00 0.00 0.00 3.91
679 693 2.091277 CGTCACGTCTTCATCTTGCTTC 59.909 50.000 0.00 0.00 0.00 3.86
680 694 3.059884 GTCACGTCTTCATCTTGCTTCA 58.940 45.455 0.00 0.00 0.00 3.02
681 695 3.122613 GTCACGTCTTCATCTTGCTTCAG 59.877 47.826 0.00 0.00 0.00 3.02
682 696 3.062763 CACGTCTTCATCTTGCTTCAGT 58.937 45.455 0.00 0.00 0.00 3.41
683 697 3.062763 ACGTCTTCATCTTGCTTCAGTG 58.937 45.455 0.00 0.00 0.00 3.66
684 698 3.062763 CGTCTTCATCTTGCTTCAGTGT 58.937 45.455 0.00 0.00 0.00 3.55
685 699 3.496130 CGTCTTCATCTTGCTTCAGTGTT 59.504 43.478 0.00 0.00 0.00 3.32
686 700 4.024556 CGTCTTCATCTTGCTTCAGTGTTT 60.025 41.667 0.00 0.00 0.00 2.83
687 701 5.177511 CGTCTTCATCTTGCTTCAGTGTTTA 59.822 40.000 0.00 0.00 0.00 2.01
688 702 6.128445 CGTCTTCATCTTGCTTCAGTGTTTAT 60.128 38.462 0.00 0.00 0.00 1.40
689 703 7.063426 CGTCTTCATCTTGCTTCAGTGTTTATA 59.937 37.037 0.00 0.00 0.00 0.98
690 704 8.386606 GTCTTCATCTTGCTTCAGTGTTTATAG 58.613 37.037 0.00 0.00 0.00 1.31
691 705 8.097038 TCTTCATCTTGCTTCAGTGTTTATAGT 58.903 33.333 0.00 0.00 0.00 2.12
692 706 7.834068 TCATCTTGCTTCAGTGTTTATAGTC 57.166 36.000 0.00 0.00 0.00 2.59
693 707 6.531594 TCATCTTGCTTCAGTGTTTATAGTCG 59.468 38.462 0.00 0.00 0.00 4.18
694 708 5.779922 TCTTGCTTCAGTGTTTATAGTCGT 58.220 37.500 0.00 0.00 0.00 4.34
695 709 5.862323 TCTTGCTTCAGTGTTTATAGTCGTC 59.138 40.000 0.00 0.00 0.00 4.20
696 710 4.163552 TGCTTCAGTGTTTATAGTCGTCG 58.836 43.478 0.00 0.00 0.00 5.12
697 711 3.546670 GCTTCAGTGTTTATAGTCGTCGG 59.453 47.826 0.00 0.00 0.00 4.79
698 712 4.730657 CTTCAGTGTTTATAGTCGTCGGT 58.269 43.478 0.00 0.00 0.00 4.69
699 713 5.674569 GCTTCAGTGTTTATAGTCGTCGGTA 60.675 44.000 0.00 0.00 0.00 4.02
700 714 5.475273 TCAGTGTTTATAGTCGTCGGTAG 57.525 43.478 0.00 0.00 0.00 3.18
701 715 5.178061 TCAGTGTTTATAGTCGTCGGTAGA 58.822 41.667 0.00 0.00 0.00 2.59
702 716 5.819379 TCAGTGTTTATAGTCGTCGGTAGAT 59.181 40.000 0.00 0.00 0.00 1.98
703 717 6.986231 TCAGTGTTTATAGTCGTCGGTAGATA 59.014 38.462 0.00 0.00 0.00 1.98
704 718 7.170489 TCAGTGTTTATAGTCGTCGGTAGATAG 59.830 40.741 0.00 0.00 0.00 2.08
705 719 6.989169 AGTGTTTATAGTCGTCGGTAGATAGT 59.011 38.462 0.00 0.00 0.00 2.12
706 720 7.170658 AGTGTTTATAGTCGTCGGTAGATAGTC 59.829 40.741 0.00 0.00 0.00 2.59
707 721 7.170658 GTGTTTATAGTCGTCGGTAGATAGTCT 59.829 40.741 0.00 0.00 0.00 3.24
708 722 8.360390 TGTTTATAGTCGTCGGTAGATAGTCTA 58.640 37.037 0.00 0.00 0.00 2.59
709 723 9.364989 GTTTATAGTCGTCGGTAGATAGTCTAT 57.635 37.037 0.00 0.00 30.76 1.98
710 724 8.923609 TTATAGTCGTCGGTAGATAGTCTATG 57.076 38.462 0.00 0.00 30.76 2.23
711 725 4.567971 AGTCGTCGGTAGATAGTCTATGG 58.432 47.826 0.00 0.00 30.76 2.74
712 726 4.282957 AGTCGTCGGTAGATAGTCTATGGA 59.717 45.833 0.00 0.00 30.76 3.41
713 727 5.046448 AGTCGTCGGTAGATAGTCTATGGAT 60.046 44.000 0.00 0.00 30.76 3.41
714 728 5.642919 GTCGTCGGTAGATAGTCTATGGATT 59.357 44.000 0.00 0.00 30.76 3.01
715 729 6.149142 GTCGTCGGTAGATAGTCTATGGATTT 59.851 42.308 0.00 0.00 30.76 2.17
716 730 6.148976 TCGTCGGTAGATAGTCTATGGATTTG 59.851 42.308 0.00 0.00 30.76 2.32
717 731 6.072618 CGTCGGTAGATAGTCTATGGATTTGT 60.073 42.308 0.00 0.00 30.76 2.83
718 732 7.085116 GTCGGTAGATAGTCTATGGATTTGTG 58.915 42.308 0.00 0.00 30.76 3.33
719 733 6.776116 TCGGTAGATAGTCTATGGATTTGTGT 59.224 38.462 0.00 0.00 30.76 3.72
720 734 7.940688 TCGGTAGATAGTCTATGGATTTGTGTA 59.059 37.037 0.00 0.00 30.76 2.90
721 735 8.573885 CGGTAGATAGTCTATGGATTTGTGTAA 58.426 37.037 0.00 0.00 30.76 2.41
746 760 5.821516 TTTTGGTGTTCGTTGTATTGTCT 57.178 34.783 0.00 0.00 0.00 3.41
747 761 5.821516 TTTGGTGTTCGTTGTATTGTCTT 57.178 34.783 0.00 0.00 0.00 3.01
748 762 4.804608 TGGTGTTCGTTGTATTGTCTTG 57.195 40.909 0.00 0.00 0.00 3.02
749 763 4.443621 TGGTGTTCGTTGTATTGTCTTGA 58.556 39.130 0.00 0.00 0.00 3.02
750 764 5.060506 TGGTGTTCGTTGTATTGTCTTGAT 58.939 37.500 0.00 0.00 0.00 2.57
751 765 5.529430 TGGTGTTCGTTGTATTGTCTTGATT 59.471 36.000 0.00 0.00 0.00 2.57
752 766 6.038825 TGGTGTTCGTTGTATTGTCTTGATTT 59.961 34.615 0.00 0.00 0.00 2.17
753 767 7.226918 TGGTGTTCGTTGTATTGTCTTGATTTA 59.773 33.333 0.00 0.00 0.00 1.40
754 768 8.071368 GGTGTTCGTTGTATTGTCTTGATTTAA 58.929 33.333 0.00 0.00 0.00 1.52
755 769 9.103048 GTGTTCGTTGTATTGTCTTGATTTAAG 57.897 33.333 0.00 0.00 37.76 1.85
756 770 9.047371 TGTTCGTTGTATTGTCTTGATTTAAGA 57.953 29.630 0.00 0.00 43.01 2.10
768 782 6.726230 TCTTGATTTAAGACGAGTAGATCGG 58.274 40.000 2.07 0.00 44.34 4.18
769 783 6.541278 TCTTGATTTAAGACGAGTAGATCGGA 59.459 38.462 2.07 0.00 44.34 4.55
770 784 7.066645 TCTTGATTTAAGACGAGTAGATCGGAA 59.933 37.037 2.07 0.00 44.34 4.30
798 812 4.349663 TTTAGAAAAATGTGATCGGGCG 57.650 40.909 0.00 0.00 0.00 6.13
799 813 2.107950 AGAAAAATGTGATCGGGCGA 57.892 45.000 0.00 0.00 0.00 5.54
800 814 2.643551 AGAAAAATGTGATCGGGCGAT 58.356 42.857 0.00 0.00 37.59 4.58
801 815 8.100032 TTTTTAGAAAAATGTGATCGGGCGATC 61.100 37.037 0.00 0.00 40.53 3.69
807 821 2.125912 GATCGGGCGATCGGATGG 60.126 66.667 18.30 0.00 41.09 3.51
808 822 4.379243 ATCGGGCGATCGGATGGC 62.379 66.667 18.30 15.61 34.66 4.40
810 824 4.687215 CGGGCGATCGGATGGCAT 62.687 66.667 23.42 0.00 35.53 4.40
811 825 2.662596 GGGCGATCGGATGGCATA 59.337 61.111 23.42 0.00 35.53 3.14
812 826 1.448540 GGGCGATCGGATGGCATAG 60.449 63.158 23.42 0.00 35.53 2.23
813 827 1.293498 GGCGATCGGATGGCATAGT 59.707 57.895 23.42 0.00 35.53 2.12
814 828 1.016130 GGCGATCGGATGGCATAGTG 61.016 60.000 23.42 0.00 35.53 2.74
815 829 0.038251 GCGATCGGATGGCATAGTGA 60.038 55.000 18.30 0.00 33.87 3.41
816 830 1.988063 CGATCGGATGGCATAGTGAG 58.012 55.000 7.38 0.00 0.00 3.51
817 831 1.719600 GATCGGATGGCATAGTGAGC 58.280 55.000 0.00 0.00 0.00 4.26
818 832 0.037882 ATCGGATGGCATAGTGAGCG 60.038 55.000 0.00 0.00 0.00 5.03
819 833 2.313172 CGGATGGCATAGTGAGCGC 61.313 63.158 0.00 0.00 0.00 5.92
820 834 2.313172 GGATGGCATAGTGAGCGCG 61.313 63.158 0.00 0.00 0.00 6.86
821 835 2.280389 ATGGCATAGTGAGCGCGG 60.280 61.111 8.83 0.00 0.00 6.46
822 836 2.978452 GATGGCATAGTGAGCGCGGT 62.978 60.000 12.23 12.23 0.00 5.68
823 837 2.962253 GGCATAGTGAGCGCGGTC 60.962 66.667 30.17 30.17 0.00 4.79
824 838 3.323136 GCATAGTGAGCGCGGTCG 61.323 66.667 30.51 18.15 39.07 4.79
825 839 2.407616 CATAGTGAGCGCGGTCGA 59.592 61.111 30.51 19.76 38.10 4.20
826 840 1.939785 CATAGTGAGCGCGGTCGAC 60.940 63.158 30.51 26.68 38.10 4.20
848 862 2.350498 GCAAAGCGATAAAGTTAGCCGA 59.650 45.455 0.00 0.00 0.00 5.54
856 870 4.380974 CGATAAAGTTAGCCGACCGAATAC 59.619 45.833 0.00 0.00 0.00 1.89
862 876 3.117372 CCGACCGAATACGAGCCT 58.883 61.111 0.00 0.00 42.66 4.58
870 884 2.351726 CCGAATACGAGCCTTTTCCAAG 59.648 50.000 0.00 0.00 42.66 3.61
887 901 1.834188 AAGCCGAAAACGGATTGGAT 58.166 45.000 11.15 0.00 36.21 3.41
975 1009 3.957474 GCAGTACGCAAGAGAAAGC 57.043 52.632 5.07 0.00 41.79 3.51
1011 1061 2.397751 GCTAGACATGGCGTGCATT 58.602 52.632 12.82 0.00 0.00 3.56
1133 1210 4.410033 GGAACCTCCTCCCCGGGA 62.410 72.222 26.32 5.87 32.53 5.14
1746 1844 2.165641 TGGCTTCATCGACGTGATAAGT 59.834 45.455 0.00 0.00 34.83 2.24
1776 1898 1.337384 TGGATCTGCATAGCCGGTGT 61.337 55.000 1.90 0.00 0.00 4.16
1794 1925 1.402968 TGTAGTCGACCGGATTGTAGC 59.597 52.381 9.46 0.00 0.00 3.58
1835 1967 7.042658 CCTTTGTTTGTAGTCTTGTAGAGTCAC 60.043 40.741 0.00 0.00 0.00 3.67
1912 2070 1.350351 ACTGTTGAAGCAGCTCTGGAT 59.650 47.619 0.00 0.00 39.96 3.41
2195 2652 1.170919 GCCCGTCCTGTATCGCTCTA 61.171 60.000 0.00 0.00 0.00 2.43
2210 2667 0.392336 CTCTAGAGCTGGACATGGGC 59.608 60.000 6.86 0.00 0.00 5.36
2214 2671 2.687200 AGCTGGACATGGGCGGTA 60.687 61.111 0.00 0.00 0.00 4.02
2255 2712 1.003580 TGGAGGTGAAGAAGGATGCAC 59.996 52.381 0.00 0.00 0.00 4.57
2280 2739 4.142359 GGATGTCTGTCTGTGAACTCGTAT 60.142 45.833 0.00 0.00 0.00 3.06
2287 2746 2.014857 CTGTGAACTCGTATCTCCCGA 58.985 52.381 0.00 0.00 0.00 5.14
2397 2864 3.710722 CTCTGCCTCGCCCCAAGT 61.711 66.667 0.00 0.00 0.00 3.16
2398 2865 3.249189 TCTGCCTCGCCCCAAGTT 61.249 61.111 0.00 0.00 0.00 2.66
2447 2914 2.697425 CGCTTGATCGTCGCCTTG 59.303 61.111 0.00 0.00 0.00 3.61
2469 2945 1.066587 GTCATCTTCTCCGCCTCCG 59.933 63.158 0.00 0.00 0.00 4.63
2470 2946 1.379977 TCATCTTCTCCGCCTCCGT 60.380 57.895 0.00 0.00 0.00 4.69
2471 2947 1.227089 CATCTTCTCCGCCTCCGTG 60.227 63.158 0.00 0.00 0.00 4.94
2472 2948 3.082579 ATCTTCTCCGCCTCCGTGC 62.083 63.158 0.00 0.00 0.00 5.34
2505 2981 1.005394 TTCGACAAGCTCCGGTTCC 60.005 57.895 0.00 0.00 0.00 3.62
2510 2986 1.675641 CAAGCTCCGGTTCCCCTTG 60.676 63.158 0.00 4.77 0.00 3.61
2511 2987 2.154074 AAGCTCCGGTTCCCCTTGT 61.154 57.895 0.00 0.00 0.00 3.16
2512 2988 2.046217 GCTCCGGTTCCCCTTGTC 60.046 66.667 0.00 0.00 0.00 3.18
2513 2989 2.264794 CTCCGGTTCCCCTTGTCG 59.735 66.667 0.00 0.00 0.00 4.35
2514 2990 2.203669 TCCGGTTCCCCTTGTCGA 60.204 61.111 0.00 0.00 0.00 4.20
2515 2991 2.047560 CCGGTTCCCCTTGTCGAC 60.048 66.667 9.11 9.11 0.00 4.20
2516 2992 2.738480 CGGTTCCCCTTGTCGACA 59.262 61.111 15.76 15.76 0.00 4.35
2517 2993 1.666872 CGGTTCCCCTTGTCGACAC 60.667 63.158 19.90 4.49 0.00 3.67
2518 2994 1.302271 GGTTCCCCTTGTCGACACC 60.302 63.158 19.90 10.67 0.00 4.16
2519 2995 1.302271 GTTCCCCTTGTCGACACCC 60.302 63.158 19.90 0.00 0.00 4.61
2520 2996 1.766864 TTCCCCTTGTCGACACCCA 60.767 57.895 19.90 2.47 0.00 4.51
2521 2997 2.032071 CCCCTTGTCGACACCCAC 59.968 66.667 19.90 0.00 0.00 4.61
2522 2998 2.357034 CCCTTGTCGACACCCACG 60.357 66.667 19.90 3.71 0.00 4.94
2523 2999 2.357034 CCTTGTCGACACCCACGG 60.357 66.667 19.90 9.93 0.00 4.94
2524 3000 2.357034 CTTGTCGACACCCACGGG 60.357 66.667 19.90 0.00 42.03 5.28
2525 3001 4.612412 TTGTCGACACCCACGGGC 62.612 66.667 19.90 0.00 39.32 6.13
2527 3003 4.736896 GTCGACACCCACGGGCTC 62.737 72.222 11.55 0.00 39.32 4.70
2552 3028 2.357836 CCTCCTGCAGGCATTGGT 59.642 61.111 28.91 0.00 34.56 3.67
2553 3029 2.050350 CCTCCTGCAGGCATTGGTG 61.050 63.158 28.91 10.69 34.56 4.17
2554 3030 1.303888 CTCCTGCAGGCATTGGTGT 60.304 57.895 28.91 0.00 34.44 4.16
2555 3031 1.303561 TCCTGCAGGCATTGGTGTC 60.304 57.895 28.91 0.00 34.44 3.67
2556 3032 2.693762 CCTGCAGGCATTGGTGTCG 61.694 63.158 22.33 0.00 34.36 4.35
2557 3033 1.968017 CTGCAGGCATTGGTGTCGT 60.968 57.895 5.57 0.00 34.36 4.34
2558 3034 1.915614 CTGCAGGCATTGGTGTCGTC 61.916 60.000 5.57 0.00 34.36 4.20
2559 3035 2.690778 GCAGGCATTGGTGTCGTCC 61.691 63.158 0.00 0.00 34.36 4.79
2560 3036 2.047274 AGGCATTGGTGTCGTCCG 60.047 61.111 0.00 0.00 34.36 4.79
2561 3037 2.358247 GGCATTGGTGTCGTCCGT 60.358 61.111 0.00 0.00 0.00 4.69
2562 3038 1.964373 GGCATTGGTGTCGTCCGTT 60.964 57.895 0.00 0.00 0.00 4.44
2563 3039 1.495951 GCATTGGTGTCGTCCGTTC 59.504 57.895 0.00 0.00 0.00 3.95
2564 3040 1.908066 GCATTGGTGTCGTCCGTTCC 61.908 60.000 0.00 0.00 0.00 3.62
2565 3041 0.320421 CATTGGTGTCGTCCGTTCCT 60.320 55.000 0.00 0.00 0.00 3.36
2566 3042 0.037605 ATTGGTGTCGTCCGTTCCTC 60.038 55.000 0.00 0.00 0.00 3.71
2567 3043 2.091102 TTGGTGTCGTCCGTTCCTCC 62.091 60.000 0.00 0.00 0.00 4.30
2568 3044 2.260743 GTGTCGTCCGTTCCTCCC 59.739 66.667 0.00 0.00 0.00 4.30
2569 3045 2.993264 TGTCGTCCGTTCCTCCCC 60.993 66.667 0.00 0.00 0.00 4.81
2570 3046 4.125695 GTCGTCCGTTCCTCCCCG 62.126 72.222 0.00 0.00 0.00 5.73
2571 3047 4.666253 TCGTCCGTTCCTCCCCGT 62.666 66.667 0.00 0.00 0.00 5.28
2572 3048 4.430765 CGTCCGTTCCTCCCCGTG 62.431 72.222 0.00 0.00 0.00 4.94
2573 3049 4.754667 GTCCGTTCCTCCCCGTGC 62.755 72.222 0.00 0.00 0.00 5.34
2577 3053 4.754667 GTTCCTCCCCGTGCGTCC 62.755 72.222 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.557205 GGCTTATATAGACGTTCAGGGTG 58.443 47.826 0.00 0.00 0.00 4.61
9 10 4.868314 GGCTTATATAGACGTTCAGGGT 57.132 45.455 0.00 0.00 0.00 4.34
31 32 3.441572 TGCCTCTACAGACTAAACCGTAC 59.558 47.826 0.00 0.00 0.00 3.67
34 35 2.492484 AGTGCCTCTACAGACTAAACCG 59.508 50.000 0.00 0.00 0.00 4.44
36 37 5.520649 GCAATAGTGCCTCTACAGACTAAAC 59.479 44.000 3.16 0.00 45.68 2.01
55 56 7.394816 AGTTCTAAGCTCTAAACCTTGCAATA 58.605 34.615 0.00 0.00 0.00 1.90
57 58 5.621193 AGTTCTAAGCTCTAAACCTTGCAA 58.379 37.500 0.00 0.00 0.00 4.08
76 77 3.487574 CGCAAGATCGTATGAAGGAGTTC 59.512 47.826 0.00 0.00 43.02 3.01
95 96 9.322773 GTATAGTGTATAGTATGATCTACCGCA 57.677 37.037 0.00 0.00 0.00 5.69
96 97 8.772705 GGTATAGTGTATAGTATGATCTACCGC 58.227 40.741 0.00 0.00 0.00 5.68
97 98 9.270640 GGGTATAGTGTATAGTATGATCTACCG 57.729 40.741 0.00 0.00 0.00 4.02
109 110 8.134202 TGATTGTGATGGGGTATAGTGTATAG 57.866 38.462 0.00 0.00 0.00 1.31
111 112 7.387265 TTGATTGTGATGGGGTATAGTGTAT 57.613 36.000 0.00 0.00 0.00 2.29
118 119 9.061252 TCTGATATATTGATTGTGATGGGGTAT 57.939 33.333 0.00 0.00 0.00 2.73
143 144 8.668510 TGAGATAAAAATCTACATCCTGCTTC 57.331 34.615 0.00 0.00 0.00 3.86
152 153 8.772250 ACCCTCTTGATGAGATAAAAATCTACA 58.228 33.333 0.00 0.00 45.39 2.74
157 158 6.058183 CGGACCCTCTTGATGAGATAAAAAT 58.942 40.000 0.00 0.00 45.39 1.82
158 159 5.045869 ACGGACCCTCTTGATGAGATAAAAA 60.046 40.000 0.00 0.00 45.39 1.94
182 183 4.470664 ACGGACACAATATTAACCCAGGTA 59.529 41.667 0.00 0.00 0.00 3.08
191 192 7.389330 ACATGAGACAAAACGGACACAATATTA 59.611 33.333 0.00 0.00 0.00 0.98
197 198 2.912771 ACATGAGACAAAACGGACACA 58.087 42.857 0.00 0.00 0.00 3.72
198 199 3.963383 AACATGAGACAAAACGGACAC 57.037 42.857 0.00 0.00 0.00 3.67
204 205 7.331934 TGAGCTAGATGTAACATGAGACAAAAC 59.668 37.037 0.00 0.22 0.00 2.43
207 208 6.530019 TGAGCTAGATGTAACATGAGACAA 57.470 37.500 0.00 0.00 0.00 3.18
211 212 7.758980 GGTGATATGAGCTAGATGTAACATGAG 59.241 40.741 0.00 0.00 0.00 2.90
214 215 7.544804 TGGTGATATGAGCTAGATGTAACAT 57.455 36.000 0.00 0.00 0.00 2.71
221 222 5.512749 CCAAGCTTGGTGATATGAGCTAGAT 60.513 44.000 33.46 0.00 44.17 1.98
222 223 4.202295 CCAAGCTTGGTGATATGAGCTAGA 60.202 45.833 33.46 0.00 44.17 2.43
223 224 4.063689 CCAAGCTTGGTGATATGAGCTAG 58.936 47.826 33.46 6.28 44.17 3.42
224 225 4.077300 CCAAGCTTGGTGATATGAGCTA 57.923 45.455 33.46 0.00 44.17 3.32
225 226 2.928334 CCAAGCTTGGTGATATGAGCT 58.072 47.619 33.46 0.00 46.71 4.09
258 260 3.259902 GGTGTTAAACCCGACAGATCTC 58.740 50.000 0.00 0.00 44.02 2.75
270 272 1.944709 AGCAAGGTGTCGGTGTTAAAC 59.055 47.619 0.00 0.00 0.00 2.01
275 277 2.111043 CCAGCAAGGTGTCGGTGT 59.889 61.111 0.00 0.00 0.00 4.16
324 326 5.038683 GGACAAAAACCCTAACAAAACTCG 58.961 41.667 0.00 0.00 0.00 4.18
370 372 3.967467 ATTCCATCTTCAAGGAGCCAT 57.033 42.857 0.00 0.00 34.91 4.40
371 373 4.385643 CCTTATTCCATCTTCAAGGAGCCA 60.386 45.833 0.00 0.00 38.42 4.75
400 402 2.184533 TGGAAATGAAGGCTAGACGGA 58.815 47.619 0.00 0.00 0.00 4.69
414 416 1.031571 ATGCGACGCACCATGGAAAT 61.032 50.000 27.06 2.24 43.04 2.17
419 421 1.277739 GATGATGCGACGCACCATG 59.722 57.895 33.51 0.00 43.64 3.66
435 439 1.078214 CCTGCACATGTCCACCGAT 60.078 57.895 0.00 0.00 0.00 4.18
443 447 0.250467 GGAGACACACCTGCACATGT 60.250 55.000 0.00 0.00 0.00 3.21
445 449 1.004560 CGGAGACACACCTGCACAT 60.005 57.895 0.00 0.00 0.00 3.21
470 474 4.828939 TCTGAGCAAATCAACCAAAGACAT 59.171 37.500 0.00 0.00 37.52 3.06
481 485 4.005650 GACAACCAGATCTGAGCAAATCA 58.994 43.478 24.62 0.00 36.21 2.57
539 553 2.120232 CGCCACTTATGAAGAGTAGCG 58.880 52.381 3.06 3.06 45.50 4.26
553 567 1.745232 TCAGAACAACAAACGCCACT 58.255 45.000 0.00 0.00 0.00 4.00
558 572 1.044725 GCGCATCAGAACAACAAACG 58.955 50.000 0.30 0.00 0.00 3.60
560 574 1.001487 CCAGCGCATCAGAACAACAAA 60.001 47.619 11.47 0.00 0.00 2.83
566 580 2.010145 TAAGACCAGCGCATCAGAAC 57.990 50.000 11.47 0.00 0.00 3.01
567 581 2.554142 CATAAGACCAGCGCATCAGAA 58.446 47.619 11.47 0.00 0.00 3.02
568 582 1.202568 CCATAAGACCAGCGCATCAGA 60.203 52.381 11.47 0.00 0.00 3.27
569 583 1.224075 CCATAAGACCAGCGCATCAG 58.776 55.000 11.47 0.00 0.00 2.90
570 584 0.179048 CCCATAAGACCAGCGCATCA 60.179 55.000 11.47 0.00 0.00 3.07
571 585 0.886490 CCCCATAAGACCAGCGCATC 60.886 60.000 11.47 3.87 0.00 3.91
572 586 1.149174 CCCCATAAGACCAGCGCAT 59.851 57.895 11.47 0.00 0.00 4.73
573 587 2.589540 CCCCATAAGACCAGCGCA 59.410 61.111 11.47 0.00 0.00 6.09
574 588 2.902343 GCCCCATAAGACCAGCGC 60.902 66.667 0.00 0.00 0.00 5.92
575 589 2.203209 GGCCCCATAAGACCAGCG 60.203 66.667 0.00 0.00 0.00 5.18
576 590 0.843984 TAAGGCCCCATAAGACCAGC 59.156 55.000 0.00 0.00 0.00 4.85
577 591 1.202818 GCTAAGGCCCCATAAGACCAG 60.203 57.143 0.00 0.00 0.00 4.00
578 592 0.843984 GCTAAGGCCCCATAAGACCA 59.156 55.000 0.00 0.00 0.00 4.02
579 593 0.843984 TGCTAAGGCCCCATAAGACC 59.156 55.000 0.00 0.00 37.74 3.85
580 594 2.106511 TCATGCTAAGGCCCCATAAGAC 59.893 50.000 0.00 0.00 37.74 3.01
581 595 2.106511 GTCATGCTAAGGCCCCATAAGA 59.893 50.000 0.00 0.00 37.74 2.10
582 596 2.508526 GTCATGCTAAGGCCCCATAAG 58.491 52.381 0.00 0.00 37.74 1.73
583 597 1.202758 CGTCATGCTAAGGCCCCATAA 60.203 52.381 0.00 0.00 37.74 1.90
584 598 0.396435 CGTCATGCTAAGGCCCCATA 59.604 55.000 0.00 0.00 37.74 2.74
585 599 1.149174 CGTCATGCTAAGGCCCCAT 59.851 57.895 0.00 0.00 37.74 4.00
586 600 1.992834 TCGTCATGCTAAGGCCCCA 60.993 57.895 0.00 0.00 37.74 4.96
587 601 1.523938 GTCGTCATGCTAAGGCCCC 60.524 63.158 0.00 0.00 37.74 5.80
588 602 0.107654 AAGTCGTCATGCTAAGGCCC 60.108 55.000 0.00 0.00 37.74 5.80
589 603 1.666189 GAAAGTCGTCATGCTAAGGCC 59.334 52.381 0.00 0.00 37.74 5.19
590 604 2.349886 CAGAAAGTCGTCATGCTAAGGC 59.650 50.000 0.00 0.00 39.26 4.35
591 605 3.849911 TCAGAAAGTCGTCATGCTAAGG 58.150 45.455 0.00 0.00 0.00 2.69
592 606 5.349817 ACAATCAGAAAGTCGTCATGCTAAG 59.650 40.000 0.00 0.00 0.00 2.18
593 607 5.237815 ACAATCAGAAAGTCGTCATGCTAA 58.762 37.500 0.00 0.00 0.00 3.09
594 608 4.820897 ACAATCAGAAAGTCGTCATGCTA 58.179 39.130 0.00 0.00 0.00 3.49
595 609 3.668447 ACAATCAGAAAGTCGTCATGCT 58.332 40.909 0.00 0.00 0.00 3.79
596 610 3.681897 AGACAATCAGAAAGTCGTCATGC 59.318 43.478 0.00 0.00 37.36 4.06
597 611 6.096036 AGTAGACAATCAGAAAGTCGTCATG 58.904 40.000 0.00 0.00 37.36 3.07
598 612 6.274157 AGTAGACAATCAGAAAGTCGTCAT 57.726 37.500 0.00 0.00 37.36 3.06
599 613 5.707242 AGTAGACAATCAGAAAGTCGTCA 57.293 39.130 0.00 0.00 37.36 4.35
600 614 6.609533 TGTAGTAGACAATCAGAAAGTCGTC 58.390 40.000 0.00 0.00 37.36 4.20
601 615 6.570672 TGTAGTAGACAATCAGAAAGTCGT 57.429 37.500 0.00 0.00 37.36 4.34
625 639 0.250338 GGGAGCCGAACAGAACTTGT 60.250 55.000 0.00 0.00 43.45 3.16
626 640 2.544726 GGGAGCCGAACAGAACTTG 58.455 57.895 0.00 0.00 0.00 3.16
640 654 2.355126 CCATCATCGTCGCGGGAG 60.355 66.667 6.13 0.00 0.00 4.30
641 655 4.585526 GCCATCATCGTCGCGGGA 62.586 66.667 6.13 4.48 0.00 5.14
648 662 1.516386 GACGTGACGCCATCATCGT 60.516 57.895 4.25 10.72 43.25 3.73
649 663 0.802222 AAGACGTGACGCCATCATCG 60.802 55.000 4.25 6.25 40.28 3.84
650 664 0.924090 GAAGACGTGACGCCATCATC 59.076 55.000 4.25 0.00 40.28 2.92
651 665 0.246360 TGAAGACGTGACGCCATCAT 59.754 50.000 4.25 0.00 40.28 2.45
652 666 0.246360 ATGAAGACGTGACGCCATCA 59.754 50.000 4.25 2.58 33.79 3.07
653 667 0.924090 GATGAAGACGTGACGCCATC 59.076 55.000 4.25 9.43 0.00 3.51
654 668 0.532573 AGATGAAGACGTGACGCCAT 59.467 50.000 4.25 3.62 0.00 4.40
655 669 0.317160 AAGATGAAGACGTGACGCCA 59.683 50.000 4.25 0.00 0.00 5.69
656 670 0.716108 CAAGATGAAGACGTGACGCC 59.284 55.000 4.25 0.00 0.00 5.68
657 671 0.093705 GCAAGATGAAGACGTGACGC 59.906 55.000 4.25 0.00 0.00 5.19
658 672 1.702886 AGCAAGATGAAGACGTGACG 58.297 50.000 2.24 2.24 0.00 4.35
659 673 3.059884 TGAAGCAAGATGAAGACGTGAC 58.940 45.455 0.00 0.00 0.00 3.67
660 674 3.243873 ACTGAAGCAAGATGAAGACGTGA 60.244 43.478 0.00 0.00 0.00 4.35
661 675 3.062763 ACTGAAGCAAGATGAAGACGTG 58.937 45.455 0.00 0.00 0.00 4.49
662 676 3.062763 CACTGAAGCAAGATGAAGACGT 58.937 45.455 0.00 0.00 0.00 4.34
663 677 3.062763 ACACTGAAGCAAGATGAAGACG 58.937 45.455 0.00 0.00 0.00 4.18
664 678 5.429957 AAACACTGAAGCAAGATGAAGAC 57.570 39.130 0.00 0.00 0.00 3.01
665 679 8.097038 ACTATAAACACTGAAGCAAGATGAAGA 58.903 33.333 0.00 0.00 0.00 2.87
666 680 8.261492 ACTATAAACACTGAAGCAAGATGAAG 57.739 34.615 0.00 0.00 0.00 3.02
667 681 7.063426 CGACTATAAACACTGAAGCAAGATGAA 59.937 37.037 0.00 0.00 0.00 2.57
668 682 6.531594 CGACTATAAACACTGAAGCAAGATGA 59.468 38.462 0.00 0.00 0.00 2.92
669 683 6.311445 ACGACTATAAACACTGAAGCAAGATG 59.689 38.462 0.00 0.00 0.00 2.90
670 684 6.398918 ACGACTATAAACACTGAAGCAAGAT 58.601 36.000 0.00 0.00 0.00 2.40
671 685 5.779922 ACGACTATAAACACTGAAGCAAGA 58.220 37.500 0.00 0.00 0.00 3.02
672 686 5.220043 CGACGACTATAAACACTGAAGCAAG 60.220 44.000 0.00 0.00 0.00 4.01
673 687 4.619760 CGACGACTATAAACACTGAAGCAA 59.380 41.667 0.00 0.00 0.00 3.91
674 688 4.163552 CGACGACTATAAACACTGAAGCA 58.836 43.478 0.00 0.00 0.00 3.91
675 689 3.546670 CCGACGACTATAAACACTGAAGC 59.453 47.826 0.00 0.00 0.00 3.86
676 690 4.730657 ACCGACGACTATAAACACTGAAG 58.269 43.478 0.00 0.00 0.00 3.02
677 691 4.771590 ACCGACGACTATAAACACTGAA 57.228 40.909 0.00 0.00 0.00 3.02
678 692 5.178061 TCTACCGACGACTATAAACACTGA 58.822 41.667 0.00 0.00 0.00 3.41
679 693 5.475273 TCTACCGACGACTATAAACACTG 57.525 43.478 0.00 0.00 0.00 3.66
680 694 6.989169 ACTATCTACCGACGACTATAAACACT 59.011 38.462 0.00 0.00 0.00 3.55
681 695 7.170658 AGACTATCTACCGACGACTATAAACAC 59.829 40.741 0.00 0.00 0.00 3.32
682 696 7.212976 AGACTATCTACCGACGACTATAAACA 58.787 38.462 0.00 0.00 0.00 2.83
683 697 7.650834 AGACTATCTACCGACGACTATAAAC 57.349 40.000 0.00 0.00 0.00 2.01
684 698 9.363763 CATAGACTATCTACCGACGACTATAAA 57.636 37.037 0.00 0.00 30.79 1.40
685 699 7.978414 CCATAGACTATCTACCGACGACTATAA 59.022 40.741 0.00 0.00 30.79 0.98
686 700 7.340487 TCCATAGACTATCTACCGACGACTATA 59.660 40.741 0.00 0.00 30.79 1.31
687 701 6.154192 TCCATAGACTATCTACCGACGACTAT 59.846 42.308 0.00 0.00 30.79 2.12
688 702 5.478332 TCCATAGACTATCTACCGACGACTA 59.522 44.000 0.00 0.00 30.79 2.59
689 703 4.282957 TCCATAGACTATCTACCGACGACT 59.717 45.833 0.00 0.00 30.79 4.18
690 704 4.564041 TCCATAGACTATCTACCGACGAC 58.436 47.826 0.00 0.00 30.79 4.34
691 705 4.879197 TCCATAGACTATCTACCGACGA 57.121 45.455 0.00 0.00 30.79 4.20
692 706 6.072618 ACAAATCCATAGACTATCTACCGACG 60.073 42.308 0.00 0.00 30.79 5.12
693 707 7.085116 CACAAATCCATAGACTATCTACCGAC 58.915 42.308 0.00 0.00 30.79 4.79
694 708 6.776116 ACACAAATCCATAGACTATCTACCGA 59.224 38.462 0.00 0.00 30.79 4.69
695 709 6.982852 ACACAAATCCATAGACTATCTACCG 58.017 40.000 0.00 0.00 30.79 4.02
723 737 6.197364 AGACAATACAACGAACACCAAAAA 57.803 33.333 0.00 0.00 0.00 1.94
724 738 5.821516 AGACAATACAACGAACACCAAAA 57.178 34.783 0.00 0.00 0.00 2.44
725 739 5.354513 TCAAGACAATACAACGAACACCAAA 59.645 36.000 0.00 0.00 0.00 3.28
726 740 4.876679 TCAAGACAATACAACGAACACCAA 59.123 37.500 0.00 0.00 0.00 3.67
727 741 4.443621 TCAAGACAATACAACGAACACCA 58.556 39.130 0.00 0.00 0.00 4.17
728 742 5.607119 ATCAAGACAATACAACGAACACC 57.393 39.130 0.00 0.00 0.00 4.16
729 743 8.996988 TTAAATCAAGACAATACAACGAACAC 57.003 30.769 0.00 0.00 0.00 3.32
730 744 9.047371 TCTTAAATCAAGACAATACAACGAACA 57.953 29.630 0.00 0.00 38.39 3.18
744 758 6.541278 TCCGATCTACTCGTCTTAAATCAAGA 59.459 38.462 0.00 0.00 46.18 3.02
745 759 6.726230 TCCGATCTACTCGTCTTAAATCAAG 58.274 40.000 0.00 0.00 46.18 3.02
746 760 6.688637 TCCGATCTACTCGTCTTAAATCAA 57.311 37.500 0.00 0.00 46.18 2.57
747 761 6.318144 ACTTCCGATCTACTCGTCTTAAATCA 59.682 38.462 0.00 0.00 46.18 2.57
748 762 6.727215 ACTTCCGATCTACTCGTCTTAAATC 58.273 40.000 0.00 0.00 46.18 2.17
749 763 6.696441 ACTTCCGATCTACTCGTCTTAAAT 57.304 37.500 0.00 0.00 46.18 1.40
750 764 6.506500 AACTTCCGATCTACTCGTCTTAAA 57.493 37.500 0.00 0.00 46.18 1.52
751 765 6.506500 AAACTTCCGATCTACTCGTCTTAA 57.493 37.500 0.00 0.00 46.18 1.85
752 766 6.506500 AAAACTTCCGATCTACTCGTCTTA 57.493 37.500 0.00 0.00 46.18 2.10
753 767 5.388408 AAAACTTCCGATCTACTCGTCTT 57.612 39.130 0.00 0.00 46.18 3.01
754 768 5.388408 AAAAACTTCCGATCTACTCGTCT 57.612 39.130 0.00 0.00 46.18 4.18
775 789 5.048643 TCGCCCGATCACATTTTTCTAAAAA 60.049 36.000 3.29 3.29 41.59 1.94
776 790 4.456222 TCGCCCGATCACATTTTTCTAAAA 59.544 37.500 0.00 0.00 0.00 1.52
777 791 4.004314 TCGCCCGATCACATTTTTCTAAA 58.996 39.130 0.00 0.00 0.00 1.85
778 792 3.601435 TCGCCCGATCACATTTTTCTAA 58.399 40.909 0.00 0.00 0.00 2.10
779 793 3.254470 TCGCCCGATCACATTTTTCTA 57.746 42.857 0.00 0.00 0.00 2.10
780 794 2.107950 TCGCCCGATCACATTTTTCT 57.892 45.000 0.00 0.00 0.00 2.52
790 804 2.125912 CCATCCGATCGCCCGATC 60.126 66.667 18.06 18.06 45.42 3.69
791 805 4.379243 GCCATCCGATCGCCCGAT 62.379 66.667 10.32 4.46 37.59 4.18
793 807 3.295304 TATGCCATCCGATCGCCCG 62.295 63.158 10.32 0.00 0.00 6.13
794 808 1.448540 CTATGCCATCCGATCGCCC 60.449 63.158 10.32 0.00 0.00 6.13
795 809 1.016130 CACTATGCCATCCGATCGCC 61.016 60.000 10.32 0.00 0.00 5.54
796 810 0.038251 TCACTATGCCATCCGATCGC 60.038 55.000 10.32 0.00 0.00 4.58
797 811 1.988063 CTCACTATGCCATCCGATCG 58.012 55.000 8.51 8.51 0.00 3.69
798 812 1.719600 GCTCACTATGCCATCCGATC 58.280 55.000 0.00 0.00 0.00 3.69
799 813 0.037882 CGCTCACTATGCCATCCGAT 60.038 55.000 0.00 0.00 0.00 4.18
800 814 1.363807 CGCTCACTATGCCATCCGA 59.636 57.895 0.00 0.00 0.00 4.55
801 815 2.313172 GCGCTCACTATGCCATCCG 61.313 63.158 0.00 0.00 0.00 4.18
802 816 2.313172 CGCGCTCACTATGCCATCC 61.313 63.158 5.56 0.00 0.00 3.51
803 817 2.313172 CCGCGCTCACTATGCCATC 61.313 63.158 5.56 0.00 0.00 3.51
804 818 2.280389 CCGCGCTCACTATGCCAT 60.280 61.111 5.56 0.00 0.00 4.40
805 819 3.716539 GACCGCGCTCACTATGCCA 62.717 63.158 5.56 0.00 0.00 4.92
806 820 2.962253 GACCGCGCTCACTATGCC 60.962 66.667 5.56 0.00 0.00 4.40
807 821 3.323136 CGACCGCGCTCACTATGC 61.323 66.667 5.56 0.00 0.00 3.14
808 822 1.939785 GTCGACCGCGCTCACTATG 60.940 63.158 5.56 0.00 37.46 2.23
809 823 2.408022 GTCGACCGCGCTCACTAT 59.592 61.111 5.56 0.00 37.46 2.12
810 824 4.156622 CGTCGACCGCGCTCACTA 62.157 66.667 10.58 0.00 37.46 2.74
827 841 2.350498 TCGGCTAACTTTATCGCTTTGC 59.650 45.455 0.00 0.00 0.00 3.68
828 842 3.242316 GGTCGGCTAACTTTATCGCTTTG 60.242 47.826 0.00 0.00 0.00 2.77
829 843 2.934553 GGTCGGCTAACTTTATCGCTTT 59.065 45.455 0.00 0.00 0.00 3.51
830 844 2.547826 GGTCGGCTAACTTTATCGCTT 58.452 47.619 0.00 0.00 0.00 4.68
831 845 1.535437 CGGTCGGCTAACTTTATCGCT 60.535 52.381 0.00 0.00 0.00 4.93
832 846 0.850856 CGGTCGGCTAACTTTATCGC 59.149 55.000 0.00 0.00 0.00 4.58
833 847 2.480224 TCGGTCGGCTAACTTTATCG 57.520 50.000 0.00 0.00 0.00 2.92
834 848 4.380974 CGTATTCGGTCGGCTAACTTTATC 59.619 45.833 0.00 0.00 0.00 1.75
835 849 4.036734 TCGTATTCGGTCGGCTAACTTTAT 59.963 41.667 0.00 0.00 37.69 1.40
836 850 3.376859 TCGTATTCGGTCGGCTAACTTTA 59.623 43.478 0.00 0.00 37.69 1.85
837 851 2.164219 TCGTATTCGGTCGGCTAACTTT 59.836 45.455 0.00 0.00 37.69 2.66
838 852 1.745087 TCGTATTCGGTCGGCTAACTT 59.255 47.619 0.00 0.00 37.69 2.66
839 853 1.332997 CTCGTATTCGGTCGGCTAACT 59.667 52.381 0.00 0.00 37.69 2.24
840 854 1.751552 CTCGTATTCGGTCGGCTAAC 58.248 55.000 0.00 0.00 37.69 2.34
841 855 0.029834 GCTCGTATTCGGTCGGCTAA 59.970 55.000 0.00 0.00 37.69 3.09
842 856 1.650912 GCTCGTATTCGGTCGGCTA 59.349 57.895 0.00 0.00 37.69 3.93
843 857 2.412112 GCTCGTATTCGGTCGGCT 59.588 61.111 0.00 0.00 37.69 5.52
844 858 2.624437 AAGGCTCGTATTCGGTCGGC 62.624 60.000 0.00 0.00 37.69 5.54
848 862 1.276989 TGGAAAAGGCTCGTATTCGGT 59.723 47.619 0.00 0.00 37.69 4.69
856 870 1.234615 TTCGGCTTGGAAAAGGCTCG 61.235 55.000 9.89 0.00 42.51 5.03
884 898 1.064060 CGCCAGTCGGATTCAAAATCC 59.936 52.381 8.39 8.39 34.90 3.01
974 1008 1.127701 CGCAAGCTAGATCTCTTCGC 58.872 55.000 0.00 3.91 0.00 4.70
1011 1061 2.777960 AAAGGGAACTGGGGCTGCA 61.778 57.895 0.50 0.00 42.68 4.41
1133 1210 5.404946 CATCGAAATTCAGCTTCAACCATT 58.595 37.500 0.00 0.00 0.00 3.16
1628 1712 1.561542 CCCATCTTGGAAGCTACCACT 59.438 52.381 0.00 0.00 40.96 4.00
1746 1844 1.476488 TGCAGATCCATCTCGACGAAA 59.524 47.619 0.00 0.00 34.22 3.46
1776 1898 0.659427 CGCTACAATCCGGTCGACTA 59.341 55.000 16.46 1.71 0.00 2.59
1794 1925 4.718940 ACAAAGGATTAATTTGCCCTCG 57.281 40.909 0.90 0.00 40.54 4.63
1835 1967 2.049228 GTGTAAAGACCTCGTCACGTG 58.951 52.381 9.94 9.94 34.60 4.49
1884 2042 4.136796 AGCTGCTTCAACAGTAAACATCA 58.863 39.130 0.00 0.00 39.96 3.07
1912 2070 2.640346 TCGATGTTACTGTAAGCGCA 57.360 45.000 11.47 0.00 37.60 6.09
1993 2159 9.314321 GCACAGCTACTTAAAGAAATCATAGTA 57.686 33.333 0.00 0.00 0.00 1.82
2092 2548 1.188219 TCAGGAGTCTCTGCGCCTTT 61.188 55.000 4.18 0.00 36.52 3.11
2152 2609 1.613630 ATCCTGGCCTTCGAGGTGT 60.614 57.895 3.32 0.00 37.80 4.16
2195 2652 3.790437 CCGCCCATGTCCAGCTCT 61.790 66.667 0.00 0.00 0.00 4.09
2203 2660 2.122797 TCGTCGATACCGCCCATGT 61.123 57.895 0.00 0.00 35.37 3.21
2208 2665 2.649975 CGTGTCGTCGATACCGCC 60.650 66.667 15.40 0.00 35.37 6.13
2210 2667 2.098871 TGCGTGTCGTCGATACCG 59.901 61.111 15.40 11.66 37.07 4.02
2214 2671 1.934220 ATCCTGTGCGTGTCGTCGAT 61.934 55.000 0.00 0.00 0.00 3.59
2280 2739 3.062466 CGCCTGTGAGTCGGGAGA 61.062 66.667 0.00 0.00 43.66 3.71
2287 2746 2.421739 GTGGTGACGCCTGTGAGT 59.578 61.111 6.60 0.00 38.35 3.41
2361 2828 2.590007 GCTAGGACATGGCGGCTG 60.590 66.667 11.43 8.69 0.00 4.85
2395 2862 1.683441 CTTTGGCGGGAGGGTAACT 59.317 57.895 0.00 0.00 0.00 2.24
2397 2864 1.135068 TTCCTTTGGCGGGAGGGTAA 61.135 55.000 1.50 0.00 34.06 2.85
2398 2865 0.917333 ATTCCTTTGGCGGGAGGGTA 60.917 55.000 1.50 0.00 34.06 3.69
2445 2912 1.218047 CGGAGAAGATGACGGCCAA 59.782 57.895 2.24 0.00 0.00 4.52
2447 2914 2.586357 GCGGAGAAGATGACGGCC 60.586 66.667 0.00 0.00 0.00 6.13
2471 2947 3.991536 GAAGAGGAGACCGCACCGC 62.992 68.421 0.00 0.00 0.00 5.68
2472 2948 2.182030 GAAGAGGAGACCGCACCG 59.818 66.667 0.00 0.00 0.00 4.94
2473 2949 2.182030 CGAAGAGGAGACCGCACC 59.818 66.667 0.00 0.00 0.00 5.01
2505 2981 2.357034 CGTGGGTGTCGACAAGGG 60.357 66.667 21.95 4.40 0.00 3.95
2510 2986 4.736896 GAGCCCGTGGGTGTCGAC 62.737 72.222 9.11 9.11 37.65 4.20
2535 3011 2.050350 CACCAATGCCTGCAGGAGG 61.050 63.158 37.21 29.30 46.13 4.30
2536 3012 1.303888 ACACCAATGCCTGCAGGAG 60.304 57.895 37.21 20.62 37.39 3.69
2537 3013 1.303561 GACACCAATGCCTGCAGGA 60.304 57.895 37.21 21.13 37.39 3.86
2538 3014 2.693762 CGACACCAATGCCTGCAGG 61.694 63.158 29.34 29.34 38.53 4.85
2539 3015 1.915614 GACGACACCAATGCCTGCAG 61.916 60.000 6.78 6.78 0.00 4.41
2540 3016 1.965930 GACGACACCAATGCCTGCA 60.966 57.895 0.00 0.00 0.00 4.41
2541 3017 2.690778 GGACGACACCAATGCCTGC 61.691 63.158 0.00 0.00 0.00 4.85
2542 3018 2.390599 CGGACGACACCAATGCCTG 61.391 63.158 0.00 0.00 0.00 4.85
2543 3019 2.047274 CGGACGACACCAATGCCT 60.047 61.111 0.00 0.00 0.00 4.75
2544 3020 1.908066 GAACGGACGACACCAATGCC 61.908 60.000 0.00 0.00 0.00 4.40
2545 3021 1.495951 GAACGGACGACACCAATGC 59.504 57.895 0.00 0.00 0.00 3.56
2546 3022 0.320421 AGGAACGGACGACACCAATG 60.320 55.000 0.00 0.00 0.00 2.82
2547 3023 0.037605 GAGGAACGGACGACACCAAT 60.038 55.000 0.00 0.00 0.00 3.16
2548 3024 1.364901 GAGGAACGGACGACACCAA 59.635 57.895 0.00 0.00 0.00 3.67
2549 3025 2.567497 GGAGGAACGGACGACACCA 61.567 63.158 0.00 0.00 0.00 4.17
2550 3026 2.260743 GGAGGAACGGACGACACC 59.739 66.667 0.00 0.00 0.00 4.16
2551 3027 2.260743 GGGAGGAACGGACGACAC 59.739 66.667 0.00 0.00 0.00 3.67
2552 3028 2.993264 GGGGAGGAACGGACGACA 60.993 66.667 0.00 0.00 0.00 4.35
2553 3029 4.125695 CGGGGAGGAACGGACGAC 62.126 72.222 0.00 0.00 0.00 4.34
2554 3030 4.666253 ACGGGGAGGAACGGACGA 62.666 66.667 0.00 0.00 0.00 4.20
2555 3031 4.430765 CACGGGGAGGAACGGACG 62.431 72.222 0.00 0.00 0.00 4.79
2556 3032 4.754667 GCACGGGGAGGAACGGAC 62.755 72.222 0.00 0.00 0.00 4.79
2560 3036 4.754667 GGACGCACGGGGAGGAAC 62.755 72.222 0.00 0.00 0.00 3.62



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.